Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54554.t1 | XP_013465691.1 | 98.5 | 334 | 5 | 0 | 1 | 334 | 9 | 342 | 2.70E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54554.t1 | Q6NMC6 | 58.9 | 333 | 115 | 5 | 12 | 334 | 1 | 321 | 1.3e-94 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54554.t1 | A0A072VD45 | 98.5 | 334 | 5 | 0 | 1 | 334 | 9 | 342 | 1.9e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene54554 | 0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene059163 | MS.gene54554 | 0.984973 | 3.82E-162 | -1.69E-46 |
| MS.gene059164 | MS.gene54554 | 0.993194 | 4.50E-198 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAAACTTCATCATAAT+TGG | 0.201171 | 1.3:+11973394 | None:intergenic |
| ATAAATACTGTGGATCATTT+AGG | 0.221162 | 1.3:-11973043 | MS.gene54554:CDS |
| TAACAAGTCACTCACTTTAT+AGG | 0.234312 | 1.3:+11973012 | None:intergenic |
| ATATAACGTTTGTGATGTTT+TGG | 0.268290 | 1.3:+11972556 | None:intergenic |
| ATCTTCCCCATGAATGAAAA+AGG | 0.307980 | 1.3:+11973446 | None:intergenic |
| GTGGATCTGTTGCTTGAGTT+TGG | 0.358344 | 1.3:+11971774 | None:intergenic |
| GTAGTTGATCTACCAGTCTT+TGG | 0.366290 | 1.3:+11971798 | None:intergenic |
| ACCCTTACTCTTGCATTTGA+AGG | 0.367421 | 1.3:+11971744 | None:intergenic |
| AAGATGATTGGCATCACTTC+AGG | 0.368367 | 1.3:-11972325 | MS.gene54554:CDS |
| TCCTTTCTTGCAGTATCCTT+CGG | 0.371593 | 1.3:-11971613 | MS.gene54554:intron |
| GCTCTTTGATGATAGTCTAA+TGG | 0.375978 | 1.3:-11973360 | MS.gene54554:intron |
| AGAAGACGTTTACTCTTACT+AGG | 0.379538 | 1.3:+11971522 | None:intergenic |
| GTCCTTCAAATGCAAGAGTA+AGG | 0.381834 | 1.3:-11971746 | MS.gene54554:CDS |
| AGTATTTATAAGAGCTTTGA+CGG | 0.399045 | 1.3:+11973057 | None:intergenic |
| TCAACAAAATCAAAATATAT+AGG | 0.400778 | 1.3:-11972365 | MS.gene54554:CDS |
| CAGATTGGTTGAAACATTGA+AGG | 0.425974 | 1.3:-11973086 | MS.gene54554:CDS |
| TAGACTTGCGCCTGCTAAGT+AGG | 0.434681 | 1.3:+11971493 | None:intergenic |
| GAAGACGTTTACTCTTACTA+GGG | 0.455154 | 1.3:+11971523 | None:intergenic |
| TTCTTAAGTCCCTACTTAGC+AGG | 0.464333 | 1.3:-11971503 | MS.gene54554:CDS |
| AATGATCCGGTACGCGAAAG+TGG | 0.466249 | 1.3:+11971840 | None:intergenic |
| GAGTGACTTGTTAGATGAAA+AGG | 0.466681 | 1.3:-11973002 | MS.gene54554:CDS |
| GCCAATCATCTTCATCATCT+AGG | 0.468564 | 1.3:+11972336 | None:intergenic |
| ACGTTTATCATGTATCGAAC+AGG | 0.471944 | 1.3:-11972954 | MS.gene54554:intron |
| TCTTTACAACCTCAGAGAGT+TGG | 0.476414 | 1.3:-11972037 | MS.gene54554:CDS |
| AGGTTTCCACTTTCGCGTAC+CGG | 0.482355 | 1.3:-11971846 | MS.gene54554:CDS |
| TGCATTTGAAGGACTTGTGG+TGG | 0.485150 | 1.3:+11971755 | None:intergenic |
| TTGGAAGCCATTCGAGGTAG+AGG | 0.487405 | 1.3:+11973413 | None:intergenic |
| TCTACCAGTCTTTGGTGTTG+TGG | 0.505674 | 1.3:+11971806 | None:intergenic |
| GCTGATTTGCGCGGCTCCGA+AGG | 0.523701 | 1.3:+11971597 | None:intergenic |
| TGACACGTTATACACATACT+TGG | 0.525305 | 1.3:-11971463 | MS.gene54554:CDS |
| TGTTGAGTTGGTACCATGCA+AGG | 0.528628 | 1.3:+11972382 | None:intergenic |
| ACTCTCTGAGGTTGTAAAGA+AGG | 0.529000 | 1.3:+11972040 | None:intergenic |
| TCTTGCATTTGAAGGACTTG+TGG | 0.532230 | 1.3:+11971752 | None:intergenic |
| TTCATTCACTTCACCCAACA+TGG | 0.537497 | 1.3:-11972008 | MS.gene54554:CDS |
| ACCTAGATGATGAAGATGAT+TGG | 0.546777 | 1.3:-11972337 | MS.gene54554:CDS |
| TAGCAGGCGCAAGTCTAAGA+AGG | 0.559475 | 1.3:-11971487 | MS.gene54554:CDS |
| TCAGTTGGGGAGACCTTGCA+TGG | 0.559628 | 1.3:-11972395 | MS.gene54554:intron |
| TCATAATTGGAAGCCATTCG+AGG | 0.561383 | 1.3:+11973407 | None:intergenic |
| GTTTACTCTTACTAGGGTGT+TGG | 0.563511 | 1.3:+11971529 | None:intergenic |
| AGACTTGCGCCTGCTAAGTA+GGG | 0.563669 | 1.3:+11971494 | None:intergenic |
| GGATCTACTTGACAATGATC+CGG | 0.571708 | 1.3:+11971827 | None:intergenic |
| CCTCATGATCCATAAAACCT+TGG | 0.572903 | 1.3:+11972611 | None:intergenic |
| TAGAGAATAAAGACATGCCA+AGG | 0.576912 | 1.3:-11972628 | MS.gene54554:CDS |
| TAGACTATCATCAAAGAGCA+AGG | 0.589354 | 1.3:+11973364 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+CGG | 0.592705 | 1.3:+11971588 | None:intergenic |
| AGATCCACAACACCAAAGAC+TGG | 0.593009 | 1.3:-11971810 | MS.gene54554:CDS |
| GATTGGCATCACTTCAGGAA+TGG | 0.593721 | 1.3:-11972320 | MS.gene54554:intron |
| AACACAACCTCTACCTCGAA+TGG | 0.597696 | 1.3:-11973420 | MS.gene54554:CDS |
| AGCGGACAGTTTCGCCACAC+AGG | 0.598006 | 1.3:-11971866 | MS.gene54554:CDS |
| TGAGGTTGTAAAGAAGGTGA+TGG | 0.601446 | 1.3:+11972046 | None:intergenic |
| TCCTTCAAATGCAAGAGTAA+GGG | 0.605270 | 1.3:-11971745 | MS.gene54554:intron |
| CAAAGCTCTTATAAATACTG+TGG | 0.609357 | 1.3:-11973053 | MS.gene54554:CDS |
| AAACGCCAACGTCTACCTCA+AGG | 0.625238 | 1.3:-11972175 | MS.gene54554:intron |
| ATGTATGTGAAATAGAGAAG+CGG | 0.632958 | 1.3:-11971884 | MS.gene54554:intron |
| TTGTACCTTGAGGTAGACGT+TGG | 0.633325 | 1.3:+11972170 | None:intergenic |
| CGCGAAAGTGGAAACCTGTG+TGG | 0.665252 | 1.3:+11971852 | None:intergenic |
| AATCATCTTCATCATCTAGG+TGG | 0.697533 | 1.3:+11972339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCTCAAAAATTTAA+GGG | + | chr1.3:11971609-11971628 | None:intergenic | 10.0% |
| !! | TAAAAATTCTCAAAAATTTA+AGG | + | chr1.3:11971610-11971629 | None:intergenic | 10.0% |
| !! | ATGAGTAATGTTAATATAAT+GGG | + | chr1.3:11972464-11972483 | None:intergenic | 15.0% |
| !! | TCAACAAAATCAAAATATAT+AGG | - | chr1.3:11972556-11972575 | MS.gene54554:CDS | 15.0% |
| !!! | AAAAATAAAGAAGAGTATAA+AGG | + | chr1.3:11971789-11971808 | None:intergenic | 15.0% |
| !! | AATCATGTTGTTATAGTAAA+GGG | - | chr1.3:11972846-11972865 | MS.gene54554:intron | 20.0% |
| !! | CATGAGTAATGTTAATATAA+TGG | + | chr1.3:11972465-11972484 | None:intergenic | 20.0% |
| !! | GCTTATAACTTAATTGAAAA+CGG | + | chr1.3:11972102-11972121 | None:intergenic | 20.0% |
| !!! | AATTAACTCACATTTGTTTT+TGG | + | chr1.3:11971749-11971768 | None:intergenic | 20.0% |
| !!! | ATATTTTGATTTTGTTGAGT+TGG | + | chr1.3:11972554-11972573 | None:intergenic | 20.0% |
| !!! | GTAAATATTTTATTCTGAAC+TGG | - | chr1.3:11973000-11973019 | MS.gene54554:CDS | 20.0% |
| !!! | TTTGTATTTTATTTGCAGAT+TGG | - | chr1.3:11971820-11971839 | MS.gene54554:CDS | 20.0% |
| !!! | TTTTTTCATTCCACTTTTAT+AGG | - | chr1.3:11972647-11972666 | MS.gene54554:intron | 20.0% |
| ! | AAATTTAAGGGATGAATTAC+TGG | + | chr1.3:11971597-11971616 | None:intergenic | 25.0% |
| ! | AAGATTGTATCCTATAAAAG+TGG | + | chr1.3:11972660-11972679 | None:intergenic | 25.0% |
| ! | AATGTATTTATAAACTTGCC+TGG | + | chr1.3:11972395-11972414 | None:intergenic | 25.0% |
| ! | ACATTAAAACGTGAATATTG+TGG | - | chr1.3:11973258-11973277 | MS.gene54554:intron | 25.0% |
| ! | AGAATTTCAAAATAGAGTTG+AGG | + | chr1.3:11972420-11972439 | None:intergenic | 25.0% |
| ! | ATAAACTGAAAAACAGCTTA+TGG | - | chr1.3:11972156-11972175 | MS.gene54554:intron | 25.0% |
| ! | ATAAATACTGTGGATCATTT+AGG | - | chr1.3:11971878-11971897 | MS.gene54554:intron | 25.0% |
| ! | CAATCATGTTGTTATAGTAA+AGG | - | chr1.3:11972845-11972864 | MS.gene54554:intron | 25.0% |
| ! | CATGAAAACTTCATCATAAT+TGG | + | chr1.3:11971530-11971549 | None:intergenic | 25.0% |
| ! | GAAAGTAATGTGAAAAACTT+TGG | - | chr1.3:11972200-11972219 | MS.gene54554:intron | 25.0% |
| ! | TCAATTTCACATATTCAGTT+GGG | - | chr1.3:11972512-11972531 | MS.gene54554:intron | 25.0% |
| !! | AGCATAATTTTTCCATAATG+TGG | - | chr1.3:11972265-11972284 | MS.gene54554:intron | 25.0% |
| !! | AGTATTTATAAGAGCTTTGA+CGG | + | chr1.3:11971867-11971886 | None:intergenic | 25.0% |
| !! | ATATAACGTTTGTGATGTTT+TGG | + | chr1.3:11972368-11972387 | None:intergenic | 25.0% |
| !!! | CTTTTTTCATCTACATTTCT+AGG | - | chr1.3:11971653-11971672 | MS.gene54554:intron | 25.0% |
| !!! | GTTTATTTCCATTAGCTTTT+CGG | + | chr1.3:11972142-11972161 | None:intergenic | 25.0% |
| !!! | TATAGTACCCAAATCTTTTT+TGG | + | chr1.3:11972939-11972958 | None:intergenic | 25.0% |
| !!! | TTTATTTCCATTAGCTTTTC+GGG | + | chr1.3:11972141-11972160 | None:intergenic | 25.0% |
| AACATGGCCAAAAAAGATTT+GGG | - | chr1.3:11972929-11972948 | MS.gene54554:intron | 30.0% | |
| AACTTTGGTGAATTTCCATT+TGG | - | chr1.3:11972215-11972234 | MS.gene54554:intron | 30.0% | |
| ATGTATGTGAAATAGAGAAG+CGG | - | chr1.3:11973037-11973056 | MS.gene54554:CDS | 30.0% | |
| CAAAGCTCTTATAAATACTG+TGG | - | chr1.3:11971868-11971887 | MS.gene54554:CDS | 30.0% | |
| CAATTTCACATATTCAGTTG+GGG | - | chr1.3:11972513-11972532 | MS.gene54554:intron | 30.0% | |
| CTCAATTTCACATATTCAGT+TGG | - | chr1.3:11972511-11972530 | MS.gene54554:intron | 30.0% | |
| TAACAAGTCACTCACTTTAT+AGG | + | chr1.3:11971912-11971931 | None:intergenic | 30.0% | |
| TACTTTCTTAAGTGCCTTAT+TGG | + | chr1.3:11972187-11972206 | None:intergenic | 30.0% | |
| TGTGCAGTTTAATTGAGAAT+TGG | + | chr1.3:11972803-11972822 | None:intergenic | 30.0% | |
| TTCTCTAATGTACCACATTA+TGG | + | chr1.3:11972280-11972299 | None:intergenic | 30.0% | |
| ! | AAACGTAACAGTTTTCCAAA+TGG | + | chr1.3:11972233-11972252 | None:intergenic | 30.0% |
| !!! | AAATCTTTTTTGGCCATGTT+GGG | + | chr1.3:11972929-11972948 | None:intergenic | 30.0% |
| !!! | CATTTGTTTTTGGTCATCAT+TGG | + | chr1.3:11971739-11971758 | None:intergenic | 30.0% |
| AATCATCTTCATCATCTAGG+TGG | + | chr1.3:11972585-11972604 | None:intergenic | 35.0% | |
| ACCTAGATGATGAAGATGAT+TGG | - | chr1.3:11972584-11972603 | MS.gene54554:CDS | 35.0% | |
| ACGTTTATCATGTATCGAAC+AGG | - | chr1.3:11971967-11971986 | MS.gene54554:intron | 35.0% | |
| AGAAGACGTTTACTCTTACT+AGG | + | chr1.3:11973402-11973421 | None:intergenic | 35.0% | |
| ATCTTCCCCATGAATGAAAA+AGG | + | chr1.3:11971478-11971497 | None:intergenic | 35.0% | |
| CAACATGGCCAAAAAAGATT+TGG | - | chr1.3:11972928-11972947 | MS.gene54554:intron | 35.0% | |
| GAAGACGTTTACTCTTACTA+GGG | + | chr1.3:11973401-11973420 | None:intergenic | 35.0% | |
| TAGACTATCATCAAAGAGCA+AGG | + | chr1.3:11971560-11971579 | None:intergenic | 35.0% | |
| TAGAGAATAAAGACATGCCA+AGG | - | chr1.3:11972293-11972312 | MS.gene54554:intron | 35.0% | |
| TCCTTCAAATGCAAGAGTAA+GGG | - | chr1.3:11973176-11973195 | MS.gene54554:intron | 35.0% | |
| TGAATGAAAAAGGTGGAAGA+AGG | + | chr1.3:11971468-11971487 | None:intergenic | 35.0% | |
| TGACACGTTATACACATACT+TGG | - | chr1.3:11973458-11973477 | MS.gene54554:CDS | 35.0% | |
| ! | AAAGACATGCCAAGGTTTTA+TGG | - | chr1.3:11972301-11972320 | MS.gene54554:intron | 35.0% |
| ! | CACAAACGTTATATTTTGCC+AGG | - | chr1.3:11972374-11972393 | MS.gene54554:CDS | 35.0% |
| ! | CAGATTGGTTGAAACATTGA+AGG | - | chr1.3:11971835-11971854 | MS.gene54554:CDS | 35.0% |
| ! | GAAAAGGTCACTGAAGTTTT+TGG | - | chr1.3:11971935-11971954 | MS.gene54554:intron | 35.0% |
| ! | GCTCTTTGATGATAGTCTAA+TGG | - | chr1.3:11971561-11971580 | MS.gene54554:CDS | 35.0% |
| !! | AAGGTTTTATGGATCATGAG+GGG | - | chr1.3:11972312-11972331 | MS.gene54554:intron | 35.0% |
| !! | CAAGGTTTTATGGATCATGA+GGG | - | chr1.3:11972311-11972330 | MS.gene54554:intron | 35.0% |
| !! | CTGATTTTGTTTGTACCTTG+AGG | + | chr1.3:11972764-11972783 | None:intergenic | 35.0% |
| !! | CTTCCACCTTTTTCATTCAT+GGG | - | chr1.3:11971469-11971488 | MS.gene54554:CDS | 35.0% |
| !! | GAGTGACTTGTTAGATGAAA+AGG | - | chr1.3:11971919-11971938 | MS.gene54554:intron | 35.0% |
| !! | TCTTCCACCTTTTTCATTCA+TGG | - | chr1.3:11971468-11971487 | MS.gene54554:CDS | 35.0% |
| !! | TTCCACCTTTTTCATTCATG+GGG | - | chr1.3:11971470-11971489 | MS.gene54554:CDS | 35.0% |
| !!! | CAAATCTTTTTTGGCCATGT+TGG | + | chr1.3:11972930-11972949 | None:intergenic | 35.0% |
| AAGATGATTGGCATCACTTC+AGG | - | chr1.3:11972596-11972615 | MS.gene54554:CDS | 40.0% | |
| AAGCTATCCCGAAAAGCTAA+TGG | - | chr1.3:11972131-11972150 | MS.gene54554:intron | 40.0% | |
| AATGCAAGAGTAAGGGTAAG+TGG | - | chr1.3:11973183-11973202 | MS.gene54554:intron | 40.0% | |
| ACCCTTACTCTTGCATTTGA+AGG | + | chr1.3:11973180-11973199 | None:intergenic | 40.0% | |
| AGCTTATGGACTTGCCAATA+AGG | - | chr1.3:11972170-11972189 | MS.gene54554:intron | 40.0% | |
| CCTCATGATCCATAAAACCT+TGG | + | chr1.3:11972313-11972332 | None:intergenic | 40.0% | |
| GCCAATCATCTTCATCATCT+AGG | + | chr1.3:11972588-11972607 | None:intergenic | 40.0% | |
| GGATCTACTTGACAATGATC+CGG | + | chr1.3:11973097-11973116 | None:intergenic | 40.0% | |
| GTAGTTGATCTACCAGTCTT+TGG | + | chr1.3:11973126-11973145 | None:intergenic | 40.0% | |
| GTCCTTCAAATGCAAGAGTA+AGG | - | chr1.3:11973175-11973194 | MS.gene54554:intron | 40.0% | |
| GTTTACTCTTACTAGGGTGT+TGG | + | chr1.3:11973395-11973414 | None:intergenic | 40.0% | |
| TCATAATTGGAAGCCATTCG+AGG | + | chr1.3:11971517-11971536 | None:intergenic | 40.0% | |
| TCCTTTCTTGCAGTATCCTT+CGG | - | chr1.3:11973308-11973327 | MS.gene54554:intron | 40.0% | |
| TCTTGCATTTGAAGGACTTG+TGG | + | chr1.3:11973172-11973191 | None:intergenic | 40.0% | |
| TCTTTACAACCTCAGAGAGT+TGG | - | chr1.3:11972884-11972903 | MS.gene54554:intron | 40.0% | |
| TGAGGTTGTAAAGAAGGTGA+TGG | + | chr1.3:11972878-11972897 | None:intergenic | 40.0% | |
| TTCATTCACTTCACCCAACA+TGG | - | chr1.3:11972913-11972932 | MS.gene54554:intron | 40.0% | |
| TTCCCCATGAATGAAAAAGG+TGG | + | chr1.3:11971475-11971494 | None:intergenic | 40.0% | |
| TTCTTAAGTCCCTACTTAGC+AGG | - | chr1.3:11973418-11973437 | MS.gene54554:CDS | 40.0% | |
| !! | ACTCTCTGAGGTTGTAAAGA+AGG | + | chr1.3:11972884-11972903 | None:intergenic | 40.0% |
| !! | CCAAGGTTTTATGGATCATG+AGG | - | chr1.3:11972310-11972329 | MS.gene54554:intron | 40.0% |
| AACACAACCTCTACCTCGAA+TGG | - | chr1.3:11971501-11971520 | MS.gene54554:CDS | 45.0% | |
| AGATCCACAACACCAAAGAC+TGG | - | chr1.3:11973111-11973130 | MS.gene54554:intron | 45.0% | |
| GAAAAAGCTCCAACTCTCTG+AGG | + | chr1.3:11972896-11972915 | None:intergenic | 45.0% | |
| GATTGGCATCACTTCAGGAA+TGG | - | chr1.3:11972601-11972620 | MS.gene54554:CDS | 45.0% | |
| TCCGAAGGATACTGCAAGAA+AGG | + | chr1.3:11973312-11973331 | None:intergenic | 45.0% | |
| TGCATTTGAAGGACTTGTGG+TGG | + | chr1.3:11973169-11973188 | None:intergenic | 45.0% | |
| TTGTACCTTGAGGTAGACGT+TGG | + | chr1.3:11972754-11972773 | None:intergenic | 45.0% | |
| ! | GTGGATCTGTTGCTTGAGTT+TGG | + | chr1.3:11973150-11973169 | None:intergenic | 45.0% |
| !! | TCTACCAGTCTTTGGTGTTG+TGG | + | chr1.3:11973118-11973137 | None:intergenic | 45.0% |
| !! | TGTTGAGTTGGTACCATGCA+AGG | + | chr1.3:11972542-11972561 | None:intergenic | 45.0% |
| AAACGCCAACGTCTACCTCA+AGG | - | chr1.3:11972746-11972765 | MS.gene54554:intron | 50.0% | |
| AATGATCCGGTACGCGAAAG+TGG | + | chr1.3:11973084-11973103 | None:intergenic | 50.0% | |
| AGACTTGCGCCTGCTAAGTA+GGG | + | chr1.3:11973430-11973449 | None:intergenic | 50.0% | |
| AGGTTTCCACTTTCGCGTAC+CGG | - | chr1.3:11973075-11973094 | MS.gene54554:CDS | 50.0% | |
| TAGACTTGCGCCTGCTAAGT+AGG | + | chr1.3:11973431-11973450 | None:intergenic | 50.0% | |
| TAGCAGGCGCAAGTCTAAGA+AGG | - | chr1.3:11973434-11973453 | MS.gene54554:CDS | 50.0% | |
| TTGGAAGCCATTCGAGGTAG+AGG | + | chr1.3:11971511-11971530 | None:intergenic | 50.0% | |
| !! | CGCATTGAAGCTGATTTGCG+CGG | + | chr1.3:11973336-11973355 | None:intergenic | 50.0% |
| CGCGAAAGTGGAAACCTGTG+TGG | + | chr1.3:11973072-11973091 | None:intergenic | 55.0% | |
| TCAGTTGGGGAGACCTTGCA+TGG | - | chr1.3:11972526-11972545 | MS.gene54554:intron | 55.0% | |
| AGCGGACAGTTTCGCCACAC+AGG | - | chr1.3:11973055-11973074 | MS.gene54554:CDS | 60.0% | |
| !! | GCTGATTTGCGCGGCTCCGA+AGG | + | chr1.3:11973327-11973346 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11971452 | 11973491 | 11971452 | ID=MS.gene54554 |
| chr1.3 | mRNA | 11971452 | 11973491 | 11971452 | ID=MS.gene54554.t1;Parent=MS.gene54554 |
| chr1.3 | exon | 11973361 | 11973491 | 11973361 | ID=MS.gene54554.t1.exon1;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11973361 | 11973491 | 11973361 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11973186 | 11973268 | 11973186 | ID=MS.gene54554.t1.exon2;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11973186 | 11973268 | 11973186 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11972955 | 11973105 | 11972955 | ID=MS.gene54554.t1.exon3;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11972955 | 11973105 | 11972955 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11972548 | 11972647 | 11972548 | ID=MS.gene54554.t1.exon4;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11972548 | 11972647 | 11972548 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11972321 | 11972413 | 11972321 | ID=MS.gene54554.t1.exon5;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11972321 | 11972413 | 11972321 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11972176 | 11972218 | 11972176 | ID=MS.gene54554.t1.exon6;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11972176 | 11972218 | 11972176 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11971993 | 11972081 | 11971993 | ID=MS.gene54554.t1.exon7;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11971993 | 11972081 | 11971993 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11971746 | 11971891 | 11971746 | ID=MS.gene54554.t1.exon8;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11971746 | 11971891 | 11971746 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| chr1.3 | exon | 11971452 | 11971622 | 11971452 | ID=MS.gene54554.t1.exon9;Parent=MS.gene54554.t1 |
| chr1.3 | CDS | 11971452 | 11971622 | 11971452 | ID=cds.MS.gene54554.t1;Parent=MS.gene54554.t1 |
| Gene Sequence |
| Protein sequence |
