AlfalfaGEDB | MS.gene059164

M. sativa cultivar XinJiangDaYe / MS.gene059164

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059164.t1	XP_013465691.1	99.1	323	3	0	1	323	20	342	1.60E-157	565.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059164.t1	Q6NMC6	58.9	333	115	5	1	323	1	321	1.3e-94	347.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059164.t1	A0A072VD45	99.1	323	3	0	1	323	20	342	1.2e-157	565.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene059164	0.812648	3.81E-51	-1.69E-46
MS.gene051478	MS.gene059164	0.811229	7.77E-51	-1.69E-46
MS.gene056228	MS.gene059164	0.801947	7.08E-49	-1.69E-46
MS.gene059163	MS.gene059164	0.978802	1.36E-146	-1.69E-46
MS.gene059164	MS.gene064517	0.808483	3.03E-50	-1.69E-46
MS.gene059164	MS.gene065643	0.834547	2.81E-56	-1.69E-46
MS.gene059164	MS.gene06793	0.811978	5.34E-51	-1.69E-46
MS.gene059164	MS.gene07138	0.800099	1.69E-48	-1.69E-46
MS.gene059164	MS.gene08366	0.80234	5.88E-49	-1.69E-46
MS.gene059164	MS.gene09275	0.81943	1.17E-52	-1.69E-46
MS.gene059164	MS.gene24224	0.811542	6.65E-51	-1.69E-46
MS.gene059164	MS.gene26665	0.80073	1.26E-48	-1.69E-46
MS.gene059164	MS.gene27011	0.815094	1.10E-51	-1.69E-46
MS.gene059164	MS.gene27274	0.817998	2.47E-52	-1.69E-46
MS.gene059164	MS.gene41164	0.800439	1.44E-48	-1.69E-46
MS.gene059164	MS.gene47366	0.821996	3.00E-53	-1.69E-46
MS.gene059164	MS.gene51589	0.822598	2.17E-53	-1.69E-46
MS.gene059164	MS.gene54554	0.993194	4.50E-198	-1.69E-46
MS.gene059164	MS.gene65139	0.807673	4.51E-50	-1.69E-46
MS.gene059164	MS.gene72487	0.801193	1.01E-48	-1.69E-46
MS.gene059164	MS.gene75387	0.806258	8.98E-50	-1.69E-46
MS.gene059164	MS.gene90732	0.820827	5.58E-53	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene059164	MS.gene79701	PPI
MS.gene06693	MS.gene059164	PPI
MS.gene059164	MS.gene31641	PPI
MS.gene92121	MS.gene059164	PPI
MS.gene059164	MS.gene98197	PPI
MS.gene059164	MS.gene013576	PPI
MS.gene059164	MS.gene019711	PPI
MS.gene059164	MS.gene06902	PPI
MS.gene059164	MS.gene059163	PPI
MS.gene059164	MS.gene024488	PPI
MS.gene059164	MS.gene057119	PPI
MS.gene059164	MS.gene22839	PPI
MS.gene059164	MS.gene050599	PPI
MS.gene059164	MS.gene54480	PPI
MS.gene059164	MS.gene021449	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059164.t1	MTR_1g007880	99.071	323	3	0	1	323	1	323	0.0	664
MS.gene059164.t1	MTR_1g007880	99.071	323	3	0	1	323	20	342	0.0	663
MS.gene059164.t1	MTR_3g091760	75.229	327	76	3	1	323	1	326	6.01e-179	498
MS.gene059164.t1	MTR_3g091760	76.577	222	47	3	1	218	1	221	5.67e-122	350
MS.gene059164.t1	MTR_8g028410	52.672	131	62	0	13	143	15	145	2.24e-42	145
MS.gene059164.t1	MTR_8g028410	52.672	131	62	0	13	143	15	145	8.00e-42	145
MS.gene059164.t1	MTR_8g028410	52.672	131	62	0	13	143	15	145	1.09e-41	147
MS.gene059164.t1	MTR_8g028410	52.672	131	62	0	13	143	15	145	2.70e-41	145
MS.gene059164.t1	MTR_7g116710	50.000	134	65	1	18	149	2	135	3.04e-38	137
MS.gene059164.t1	MTR_6g087680	28.926	121	85	1	21	141	19	138	1.47e-14	72.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059164.t1	AT5G24310	62.997	327	111	5	1	323	1	321	1.12e-140	400
MS.gene059164.t1	AT3G49290	63.636	319	105	6	8	323	2	312	5.81e-139	396
MS.gene059164.t1	AT3G49290	63.636	319	105	6	8	323	2	312	5.81e-139	396
MS.gene059164.t1	AT5G24310	63.438	320	107	5	8	323	2	315	1.53e-138	395
MS.gene059164.t1	AT5G24310	60.550	327	105	6	1	323	1	307	4.36e-129	370
MS.gene059164.t1	AT5G24310	66.055	218	72	2	8	223	2	219	4.74e-98	289
MS.gene059164.t1	AT5G42030	38.079	302	147	5	13	311	14	278	2.22e-59	192
MS.gene059164.t1	AT5G42030	44.017	234	107	3	13	243	14	226	2.27e-55	183
MS.gene059164.t1	AT5G42030	46.023	176	83	1	13	188	14	177	1.03e-45	154
MS.gene059164.t1	AT2G46225	49.618	131	66	0	13	143	12	142	1.17e-38	138
MS.gene059164.t1	AT2G46225	49.618	131	66	0	13	143	12	142	1.35e-38	139
MS.gene059164.t1	AT2G46225	49.618	131	66	0	13	143	12	142	2.09e-38	139
MS.gene059164.t1	AT5G42030	33.465	254	129	5	61	311	15	231	1.55e-35	129

Find 56 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATGAAAACTTCATCATAAT+TGG	0.201171	1.2:+11910349	None:intergenic
ATAAATACTGTGGATCATTT+AGG	0.221162	1.2:-11909998	MS.gene059164:CDS
TAACAAGTCACTCACTTTAT+AGG	0.234312	1.2:+11909967	None:intergenic
ATATAACGTTTGTGATGTTT+TGG	0.268290	1.2:+11909511	None:intergenic
GTGGATCTGTTGCTTGAGTT+TGG	0.358344	1.2:+11908729	None:intergenic
GTAGTTGATCTACCAGTCTT+TGG	0.366290	1.2:+11908753	None:intergenic
ACCCTTACTCTTGCATTTGA+AGG	0.367421	1.2:+11908699	None:intergenic
AAGATGATTGGCATCACTTC+AGG	0.368367	1.2:-11909280	MS.gene059164:CDS
TCCTTTCTTGCAGTATCCTT+CGG	0.371593	1.2:-11908568	MS.gene059164:intron
GCTCTTTGATGATAGTCTAA+TGG	0.375978	1.2:-11910315	MS.gene059164:intron
AGAAGACGTTTACTCTTACT+AGG	0.379538	1.2:+11908477	None:intergenic
GTCCTTCAAATGCAAGAGTA+AGG	0.381834	1.2:-11908701	MS.gene059164:CDS
AGTATTTATAAGAGCTTTGA+CGG	0.399045	1.2:+11910012	None:intergenic
TCAACAAAATCAAAATATAT+AGG	0.400778	1.2:-11909320	MS.gene059164:CDS
CAGATTGGTTGAAACATTGA+AGG	0.425974	1.2:-11910041	MS.gene059164:CDS
TAGACTTGCGCCTGCTAAGT+AGG	0.434681	1.2:+11908448	None:intergenic
GAAGACGTTTACTCTTACTA+GGG	0.455154	1.2:+11908478	None:intergenic
TTCTTAAGTCCCTACTTAGC+AGG	0.464333	1.2:-11908458	MS.gene059164:CDS
AATGATCCGGTACGCGAAAG+TGG	0.466249	1.2:+11908795	None:intergenic
GAGTGACTTGTTAGATGAAA+AGG	0.466681	1.2:-11909957	MS.gene059164:CDS
GCCAATCATCTTCATCATCT+AGG	0.468564	1.2:+11909291	None:intergenic
ACGTTTATCATGTATCGAAC+AGG	0.471944	1.2:-11909909	MS.gene059164:intron
TCTTTACAACCTCAGAGAGT+TGG	0.476414	1.2:-11908992	MS.gene059164:CDS
AGGTTTCCACTTTCGCGTAC+CGG	0.482355	1.2:-11908801	MS.gene059164:CDS
TGCATTTGAAGGACTTGTGG+TGG	0.485150	1.2:+11908710	None:intergenic
TTGGAAGCCATTCGAGGTAG+AGG	0.487405	1.2:+11910368	None:intergenic
TCTACCAGTCTTTGGTGTTG+TGG	0.505674	1.2:+11908761	None:intergenic
GCTGATTTGCGCGGCTCCGA+AGG	0.523701	1.2:+11908552	None:intergenic
TGACACGTTATACACATACT+TGG	0.525305	1.2:-11908418	MS.gene059164:CDS
TGTTGAGTTGGTACCATGCA+AGG	0.528628	1.2:+11909337	None:intergenic
ACTCTCTGAGGTTGTAAAGA+AGG	0.529000	1.2:+11908995	None:intergenic
TCTTGCATTTGAAGGACTTG+TGG	0.532230	1.2:+11908707	None:intergenic
TTCATTCACTTCACCCAACA+TGG	0.537497	1.2:-11908963	MS.gene059164:CDS
ACCTAGATGATGAAGATGAT+TGG	0.546777	1.2:-11909292	MS.gene059164:CDS
TAGCAGGCGCAAGTCTAAGA+AGG	0.559475	1.2:-11908442	MS.gene059164:CDS
TCAGTTGGGGAGACCTTGCA+TGG	0.559628	1.2:-11909350	MS.gene059164:intron
TCATAATTGGAAGCCATTCG+AGG	0.561383	1.2:+11910362	None:intergenic
GTTTACTCTTACTAGGGTGT+TGG	0.563511	1.2:+11908484	None:intergenic
AGACTTGCGCCTGCTAAGTA+GGG	0.563669	1.2:+11908449	None:intergenic
GGATCTACTTGACAATGATC+CGG	0.571708	1.2:+11908782	None:intergenic
CCTCATGATCCATAAAACCT+TGG	0.572903	1.2:+11909566	None:intergenic
TAGAGAATAAAGACATGCCA+AGG	0.576912	1.2:-11909583	MS.gene059164:CDS
TAGACTATCATCAAAGAGCA+AGG	0.589354	1.2:+11910319	None:intergenic
CGCATTGAAGCTGATTTGCG+CGG	0.592705	1.2:+11908543	None:intergenic
AGATCCACAACACCAAAGAC+TGG	0.593009	1.2:-11908765	MS.gene059164:CDS
GATTGGCATCACTTCAGGAA+TGG	0.593721	1.2:-11909275	MS.gene059164:intron
AACACAACCTCTACCTCGAA+TGG	0.597696	1.2:-11910375	MS.gene059164:CDS
AGCGGACAGTTTCGCCACAC+AGG	0.598006	1.2:-11908821	MS.gene059164:CDS
TGAGGTTGTAAAGAAGGTGA+TGG	0.601446	1.2:+11909001	None:intergenic
TCCTTCAAATGCAAGAGTAA+GGG	0.605270	1.2:-11908700	MS.gene059164:intron
CAAAGCTCTTATAAATACTG+TGG	0.609357	1.2:-11910008	MS.gene059164:CDS
AAACGCCAACGTCTACCTCA+AGG	0.625238	1.2:-11909130	MS.gene059164:intron
ATGTATGTGAAATAGAGAAG+CGG	0.632958	1.2:-11908839	MS.gene059164:intron
TTGTACCTTGAGGTAGACGT+TGG	0.633325	1.2:+11909125	None:intergenic
CGCGAAAGTGGAAACCTGTG+TGG	0.665252	1.2:+11908807	None:intergenic
AATCATCTTCATCATCTAGG+TGG	0.697533	1.2:+11909294	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATTCTCAAAAATTTAA+GGG	+	chr1.2:11908529-11908548	None:intergenic	10.0%
!!	TAAAAATTCTCAAAAATTTA+AGG	+	chr1.2:11908530-11908549	None:intergenic	10.0%
!!	ATGAGTAATGTTAATATAAT+GGG	+	chr1.2:11909384-11909403	None:intergenic	15.0%
!!	TCAACAAAATCAAAATATAT+AGG	-	chr1.2:11909476-11909495	MS.gene059164:intron	15.0%
!!!	AAAAATAAAGAAGAGTATAA+AGG	+	chr1.2:11908709-11908728	None:intergenic	15.0%
!!	AATCATGTTGTTATAGTAAA+GGG	-	chr1.2:11909766-11909785	MS.gene059164:intron	20.0%
!!	CATGAGTAATGTTAATATAA+TGG	+	chr1.2:11909385-11909404	None:intergenic	20.0%
!!	GCTTATAACTTAATTGAAAA+CGG	+	chr1.2:11909022-11909041	None:intergenic	20.0%
!!!	AATTAACTCACATTTGTTTT+TGG	+	chr1.2:11908669-11908688	None:intergenic	20.0%
!!!	ATATTTTGATTTTGTTGAGT+TGG	+	chr1.2:11909474-11909493	None:intergenic	20.0%
!!!	GTAAATATTTTATTCTGAAC+TGG	-	chr1.2:11909920-11909939	MS.gene059164:CDS	20.0%
!!!	TTTGTATTTTATTTGCAGAT+TGG	-	chr1.2:11908740-11908759	MS.gene059164:CDS	20.0%
!!!	TTTTTTCATTCCACTTTTAT+AGG	-	chr1.2:11909567-11909586	MS.gene059164:CDS	20.0%
!	AAATTTAAGGGATGAATTAC+TGG	+	chr1.2:11908517-11908536	None:intergenic	25.0%
!	AAGATTGTATCCTATAAAAG+TGG	+	chr1.2:11909580-11909599	None:intergenic	25.0%
!	AATGTATTTATAAACTTGCC+TGG	+	chr1.2:11909315-11909334	None:intergenic	25.0%
!	ACATTAAAACGTGAATATTG+TGG	-	chr1.2:11910178-11910197	MS.gene059164:CDS	25.0%
!	AGAATTTCAAAATAGAGTTG+AGG	+	chr1.2:11909340-11909359	None:intergenic	25.0%
!	ATAAACTGAAAAACAGCTTA+TGG	-	chr1.2:11909076-11909095	MS.gene059164:intron	25.0%
!	ATAAATACTGTGGATCATTT+AGG	-	chr1.2:11908798-11908817	MS.gene059164:CDS	25.0%
!	CAATCATGTTGTTATAGTAA+AGG	-	chr1.2:11909765-11909784	MS.gene059164:intron	25.0%
!	CATGAAAACTTCATCATAAT+TGG	+	chr1.2:11908450-11908469	None:intergenic	25.0%
!	GAAAGTAATGTGAAAAACTT+TGG	-	chr1.2:11909120-11909139	MS.gene059164:intron	25.0%
!	TCAATTTCACATATTCAGTT+GGG	-	chr1.2:11909432-11909451	MS.gene059164:intron	25.0%
!!	AGCATAATTTTTCCATAATG+TGG	-	chr1.2:11909185-11909204	MS.gene059164:intron	25.0%
!!	AGTATTTATAAGAGCTTTGA+CGG	+	chr1.2:11908787-11908806	None:intergenic	25.0%
!!	ATATAACGTTTGTGATGTTT+TGG	+	chr1.2:11909288-11909307	None:intergenic	25.0%
!!!	CTTTTTTCATCTACATTTCT+AGG	-	chr1.2:11908573-11908592	MS.gene059164:intron	25.0%
!!!	GTTTATTTCCATTAGCTTTT+CGG	+	chr1.2:11909062-11909081	None:intergenic	25.0%
!!!	TATAGTACCCAAATCTTTTT+TGG	+	chr1.2:11909859-11909878	None:intergenic	25.0%
!!!	TTTATTTCCATTAGCTTTTC+GGG	+	chr1.2:11909061-11909080	None:intergenic	25.0%
	AACATGGCCAAAAAAGATTT+GGG	-	chr1.2:11909849-11909868	MS.gene059164:intron	30.0%
	AACTTTGGTGAATTTCCATT+TGG	-	chr1.2:11909135-11909154	MS.gene059164:CDS	30.0%
	ATGTATGTGAAATAGAGAAG+CGG	-	chr1.2:11909957-11909976	MS.gene059164:CDS	30.0%
	CAAAGCTCTTATAAATACTG+TGG	-	chr1.2:11908788-11908807	MS.gene059164:CDS	30.0%
	CAATTTCACATATTCAGTTG+GGG	-	chr1.2:11909433-11909452	MS.gene059164:intron	30.0%
	CTCAATTTCACATATTCAGT+TGG	-	chr1.2:11909431-11909450	MS.gene059164:intron	30.0%
	TAACAAGTCACTCACTTTAT+AGG	+	chr1.2:11908832-11908851	None:intergenic	30.0%
	TACTTTCTTAAGTGCCTTAT+TGG	+	chr1.2:11909107-11909126	None:intergenic	30.0%
	TGTGCAGTTTAATTGAGAAT+TGG	+	chr1.2:11909723-11909742	None:intergenic	30.0%
	TTCTCTAATGTACCACATTA+TGG	+	chr1.2:11909200-11909219	None:intergenic	30.0%
!	AAACGTAACAGTTTTCCAAA+TGG	+	chr1.2:11909153-11909172	None:intergenic	30.0%
!!!	AAATCTTTTTTGGCCATGTT+GGG	+	chr1.2:11909849-11909868	None:intergenic	30.0%
!!!	CATTTGTTTTTGGTCATCAT+TGG	+	chr1.2:11908659-11908678	None:intergenic	30.0%
	AATCATCTTCATCATCTAGG+TGG	+	chr1.2:11909505-11909524	None:intergenic	35.0%
	ACCTAGATGATGAAGATGAT+TGG	-	chr1.2:11909504-11909523	MS.gene059164:CDS	35.0%
	ACGTTTATCATGTATCGAAC+AGG	-	chr1.2:11908887-11908906	MS.gene059164:intron	35.0%
	AGAAGACGTTTACTCTTACT+AGG	+	chr1.2:11910322-11910341	None:intergenic	35.0%
	CAACATGGCCAAAAAAGATT+TGG	-	chr1.2:11909848-11909867	MS.gene059164:intron	35.0%
	GAAGACGTTTACTCTTACTA+GGG	+	chr1.2:11910321-11910340	None:intergenic	35.0%
	TAGACTATCATCAAAGAGCA+AGG	+	chr1.2:11908480-11908499	None:intergenic	35.0%
	TAGAGAATAAAGACATGCCA+AGG	-	chr1.2:11909213-11909232	MS.gene059164:intron	35.0%
	TCCTTCAAATGCAAGAGTAA+GGG	-	chr1.2:11910096-11910115	MS.gene059164:intron	35.0%
	TGACACGTTATACACATACT+TGG	-	chr1.2:11910378-11910397	MS.gene059164:CDS	35.0%
!	AAAGACATGCCAAGGTTTTA+TGG	-	chr1.2:11909221-11909240	MS.gene059164:intron	35.0%
!	CACAAACGTTATATTTTGCC+AGG	-	chr1.2:11909294-11909313	MS.gene059164:CDS	35.0%
!	CAGATTGGTTGAAACATTGA+AGG	-	chr1.2:11908755-11908774	MS.gene059164:CDS	35.0%
!	GAAAAGGTCACTGAAGTTTT+TGG	-	chr1.2:11908855-11908874	MS.gene059164:intron	35.0%
!	GCTCTTTGATGATAGTCTAA+TGG	-	chr1.2:11908481-11908500	MS.gene059164:CDS	35.0%
!!	AAGGTTTTATGGATCATGAG+GGG	-	chr1.2:11909232-11909251	MS.gene059164:intron	35.0%
!!	CAAGGTTTTATGGATCATGA+GGG	-	chr1.2:11909231-11909250	MS.gene059164:intron	35.0%
!!	CTGATTTTGTTTGTACCTTG+AGG	+	chr1.2:11909684-11909703	None:intergenic	35.0%
!!	GAGTGACTTGTTAGATGAAA+AGG	-	chr1.2:11908839-11908858	MS.gene059164:intron	35.0%
!!!	CAAATCTTTTTTGGCCATGT+TGG	+	chr1.2:11909850-11909869	None:intergenic	35.0%
	AAGATGATTGGCATCACTTC+AGG	-	chr1.2:11909516-11909535	MS.gene059164:CDS	40.0%
	AAGCTATCCCGAAAAGCTAA+TGG	-	chr1.2:11909051-11909070	MS.gene059164:intron	40.0%
	AATGCAAGAGTAAGGGTAAG+TGG	-	chr1.2:11910103-11910122	MS.gene059164:intron	40.0%
	ACCCTTACTCTTGCATTTGA+AGG	+	chr1.2:11910100-11910119	None:intergenic	40.0%
	AGCTTATGGACTTGCCAATA+AGG	-	chr1.2:11909090-11909109	MS.gene059164:intron	40.0%
	CCTCATGATCCATAAAACCT+TGG	+	chr1.2:11909233-11909252	None:intergenic	40.0%
	GCCAATCATCTTCATCATCT+AGG	+	chr1.2:11909508-11909527	None:intergenic	40.0%
	GGATCTACTTGACAATGATC+CGG	+	chr1.2:11910017-11910036	None:intergenic	40.0%
	GTAGTTGATCTACCAGTCTT+TGG	+	chr1.2:11910046-11910065	None:intergenic	40.0%
	GTCCTTCAAATGCAAGAGTA+AGG	-	chr1.2:11910095-11910114	MS.gene059164:intron	40.0%
	GTTTACTCTTACTAGGGTGT+TGG	+	chr1.2:11910315-11910334	None:intergenic	40.0%
	TCATAATTGGAAGCCATTCG+AGG	+	chr1.2:11908437-11908456	None:intergenic	40.0%
	TCCTTTCTTGCAGTATCCTT+CGG	-	chr1.2:11910228-11910247	MS.gene059164:intron	40.0%
	TCTTGCATTTGAAGGACTTG+TGG	+	chr1.2:11910092-11910111	None:intergenic	40.0%
	TCTTTACAACCTCAGAGAGT+TGG	-	chr1.2:11909804-11909823	MS.gene059164:intron	40.0%
	TGAGGTTGTAAAGAAGGTGA+TGG	+	chr1.2:11909798-11909817	None:intergenic	40.0%
	TTCATTCACTTCACCCAACA+TGG	-	chr1.2:11909833-11909852	MS.gene059164:intron	40.0%
	TTCTTAAGTCCCTACTTAGC+AGG	-	chr1.2:11910338-11910357	MS.gene059164:CDS	40.0%
!!	ACTCTCTGAGGTTGTAAAGA+AGG	+	chr1.2:11909804-11909823	None:intergenic	40.0%
!!	CCAAGGTTTTATGGATCATG+AGG	-	chr1.2:11909230-11909249	MS.gene059164:intron	40.0%
	AACACAACCTCTACCTCGAA+TGG	-	chr1.2:11908421-11908440	MS.gene059164:CDS	45.0%
	AGATCCACAACACCAAAGAC+TGG	-	chr1.2:11910031-11910050	MS.gene059164:CDS	45.0%
	GAAAAAGCTCCAACTCTCTG+AGG	+	chr1.2:11909816-11909835	None:intergenic	45.0%
	GATTGGCATCACTTCAGGAA+TGG	-	chr1.2:11909521-11909540	MS.gene059164:CDS	45.0%
	TCCGAAGGATACTGCAAGAA+AGG	+	chr1.2:11910232-11910251	None:intergenic	45.0%
	TGCATTTGAAGGACTTGTGG+TGG	+	chr1.2:11910089-11910108	None:intergenic	45.0%
	TTGTACCTTGAGGTAGACGT+TGG	+	chr1.2:11909674-11909693	None:intergenic	45.0%
!	GTGGATCTGTTGCTTGAGTT+TGG	+	chr1.2:11910070-11910089	None:intergenic	45.0%
!!	TCTACCAGTCTTTGGTGTTG+TGG	+	chr1.2:11910038-11910057	None:intergenic	45.0%
!!	TGTTGAGTTGGTACCATGCA+AGG	+	chr1.2:11909462-11909481	None:intergenic	45.0%
	AAACGCCAACGTCTACCTCA+AGG	-	chr1.2:11909666-11909685	MS.gene059164:intron	50.0%
	AATGATCCGGTACGCGAAAG+TGG	+	chr1.2:11910004-11910023	None:intergenic	50.0%
	AGACTTGCGCCTGCTAAGTA+GGG	+	chr1.2:11910350-11910369	None:intergenic	50.0%
	AGGTTTCCACTTTCGCGTAC+CGG	-	chr1.2:11909995-11910014	MS.gene059164:CDS	50.0%
	TAGACTTGCGCCTGCTAAGT+AGG	+	chr1.2:11910351-11910370	None:intergenic	50.0%
	TAGCAGGCGCAAGTCTAAGA+AGG	-	chr1.2:11910354-11910373	MS.gene059164:CDS	50.0%
	TTGGAAGCCATTCGAGGTAG+AGG	+	chr1.2:11908431-11908450	None:intergenic	50.0%
!!	CGCATTGAAGCTGATTTGCG+CGG	+	chr1.2:11910256-11910275	None:intergenic	50.0%
	CGCGAAAGTGGAAACCTGTG+TGG	+	chr1.2:11909992-11910011	None:intergenic	55.0%
	TCAGTTGGGGAGACCTTGCA+TGG	-	chr1.2:11909446-11909465	MS.gene059164:intron	55.0%
	AGCGGACAGTTTCGCCACAC+AGG	-	chr1.2:11909975-11909994	MS.gene059164:CDS	60.0%
!!	GCTGATTTGCGCGGCTCCGA+AGG	+	chr1.2:11910247-11910266	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	11908407	11910411	11908407	ID=MS.gene059164
chr1.2	mRNA	11908407	11910411	11908407	ID=MS.gene059164.t1;Parent=MS.gene059164
chr1.2	exon	11910316	11910411	11910316	ID=MS.gene059164.t1.exon1;Parent=MS.gene059164.t1
chr1.2	CDS	11910316	11910411	11910316	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11910141	11910223	11910141	ID=MS.gene059164.t1.exon2;Parent=MS.gene059164.t1
chr1.2	CDS	11910141	11910223	11910141	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11909910	11910060	11909910	ID=MS.gene059164.t1.exon3;Parent=MS.gene059164.t1
chr1.2	CDS	11909910	11910060	11909910	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11909503	11909602	11909503	ID=MS.gene059164.t1.exon4;Parent=MS.gene059164.t1
chr1.2	CDS	11909503	11909602	11909503	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11909276	11909368	11909276	ID=MS.gene059164.t1.exon5;Parent=MS.gene059164.t1
chr1.2	CDS	11909276	11909368	11909276	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11909131	11909173	11909131	ID=MS.gene059164.t1.exon6;Parent=MS.gene059164.t1
chr1.2	CDS	11909131	11909173	11909131	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11908948	11909036	11908948	ID=MS.gene059164.t1.exon7;Parent=MS.gene059164.t1
chr1.2	CDS	11908948	11909036	11908948	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11908701	11908846	11908701	ID=MS.gene059164.t1.exon8;Parent=MS.gene059164.t1
chr1.2	CDS	11908701	11908846	11908701	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1
chr1.2	exon	11908407	11908577	11908407	ID=MS.gene059164.t1.exon9;Parent=MS.gene059164.t1
chr1.2	CDS	11908407	11908577	11908407	ID=cds.MS.gene059164.t1;Parent=MS.gene059164.t1

Gene Sequence

>MS.gene059164

ATGGGGAAGATTGCAACACAACCTCTACCTCGAATGGCTTCCAATTATGATGAAGTTTTCATGCATCAAACCTTGCTCTTTGATGATAGTCTAATGGTAACTTTGATCCAGTAATTCATCCCTTAAATTTTTGAGAATTTTTAAGTGTGATTTATTAACTTTTATTCTTTTTTCATCTACATTTCTAGGATTTAAAAAATCTTAGAACACAATTGTACTCAGCTGCTGAATATTTTGAACTCTCATACACCAATGATGACCAAAAACAAATGTGAGTTAATTTGCTAATACTATAGTATCCTTTATACTCTTCTTTATTTTTCATTATCTCTTTTTGTATTTTATTTGCAGATTGGTTGAAACATTGAAGGATTATGCCGTCAAAGCTCTTATAAATACTGTGGATCATTTAGGTTCTGTTGCCTATAAAGTGAGTGACTTGTTAGATGAAAAGGTCACTGAAGTTTTTGGTGAAGATCTACGTTTATCATGTATCGAACAGGTATGCTTAGACTCTATTTCAATAAACAACTTAATTAAGCATCATAAATATTTATCACATATGTACTTTTGTATAAGCTATTTCGAAAGCAAAGATGAAATAAAGTCAAACCGTTTTCAATTAAGTTATAAGCTATTTATGCAAGCTATCCCGAAAAGCTAATGGAAATAAACTGAAAAACAGCTTATGGACTTGCCAATAAGGCACTTAAGAAAGTAATGTGAAAAACTTTGGTGAATTTCCATTTGGAAAACTGTTACGTTTTGCTAAGATCATAGCATAATTTTTCCATAATGTGGTACATTAGAGAATAAAGACATGCCAAGGTTTTATGGATCATGAGGGGCATACGCAGCAGTCTCTAGTGATCAGCACTCCAAAACATCACAAACGTTATATTTTGCCAGGCAAGTTTATAAATACATTATCCTCAACTCTATTTTGAAATTCTTTAGATTTTTTTTTCTTTTCACCCATTATATTAACATTACTCATGCTATTTGATTTTTAATTATAACATTTCTCAATTTCACATATTCAGTTGGGGAGACCTTGCATGGTACCAACTCAACAAAATCAAAATATATAGGATGCCACCTAGATGATGAAGATGATTGGCATCACTTCAGGAATGGTATTCTATCTTATTTCACTCAACTTTTTTCATTCCACTTTTATAGGATACAATCTTAAGACATAAGTTTATATATCTTGTATTCTGATTTGTATCTCGAAGCTGTTCGCGCTACAATAAGAGAAACGCCAACGTCTACCTCAAGGTACAAACAAAATCAGCATACTATTAAGCGTGCCAATTCTCAATTAAACTGCACAATTATTTTGATACAATTCTTTTCAATCATGTTGTTATAGTAAAGGGAATTCTCCATCACCTTCTTTACAACCTCAGAGAGTTGGAGCTTTTTCATTCACTTCACCCAACATGGCCAAAAAAGATTTGGGTACTATATACACATTTAATAATATGATATGATATATAGTTCATTAAGAGTAAATATTTTATTCTGAACTGGATTGCAATCTTAATATGTATGTGAAATAGAGAAGCGGACAGTTTCGCCACACAGGTTTCCACTTTCGCGTACCGGATCATTGTCAAGTAGATCCACAACACCAAAGACTGGTAGATCAACTACTCCAAACTCAAGCAACAGATCCACCACAAGTCCTTCAAATGCAAGAGTAAGGGTAAGTGGAAATCTAATTAAAAAAAATCTTGATAACGTGAATCATGATTGTATTCTCATCACATTAAAACGTGAATATTGTGGTTTCTCTGACTGCATCTCTGTTATGATTCCTTTCTTGCAGTATCCTTCGGAGCCGCGCAAATCAGCTTCAATGCGACTATCTTCTGATGTTAACAACATCAGAGATATTGACCAACACCCTAGTAAGAGTAAACGTCTTCTTAAGTCCCTACTTAGCAGGCGCAAGTCTAAGAAGGATGACACGTTATACACATACTTGGATGAATATTGA

Protein sequence

>MS.gene059164.t1

MGKIATQPLPRMASNYDEVFMHQTLLFDDSLMDLKNLRTQLYSAAEYFELSYTNDDQKQILVETLKDYAVKALINTVDHLGSVAYKVSDLLDEKVTEVFGEDLRLSCIEQRIKTCQGFMDHEGHTQQSLVISTPKHHKRYILPVGETLHGTNSTKSKYIGCHLDDEDDWHHFRNAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSLSSRSTTPKTGRSTTPNSSNRSTTSPSNARVRYPSEPRKSASMRLSSDVNNIRDIDQHPSKSKRLLKSLLSRRKSKKDDTLYTYLDEY