Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54556.t1 | XP_003588519.1 | 99.6 | 241 | 1 | 0 | 1 | 241 | 85 | 325 | 1.10E-145 | 525.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54556.t1 | Q84JL3 | 92.9 | 241 | 17 | 0 | 1 | 241 | 77 | 317 | 2.0e-137 | 489.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54556.t1 | A8W460 | 99.6 | 241 | 1 | 0 | 1 | 241 | 85 | 325 | 7.7e-146 | 525.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059151 | MS.gene54556 | 0.946008 | 1.04E-104 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54556.t1 | MTR_1g008120 | 99.585 | 241 | 1 | 0 | 1 | 241 | 85 | 325 | 0.0 | 511 |
MS.gene54556.t1 | MTR_3g091510 | 96.610 | 236 | 8 | 0 | 1 | 236 | 77 | 312 | 5.73e-177 | 489 |
MS.gene54556.t1 | MTR_8g027520 | 89.627 | 241 | 25 | 0 | 1 | 241 | 70 | 310 | 2.07e-170 | 472 |
MS.gene54556.t1 | MTR_8g027520 | 89.627 | 241 | 25 | 0 | 1 | 241 | 61 | 301 | 2.95e-170 | 471 |
MS.gene54556.t1 | MTR_7g117415 | 84.937 | 239 | 36 | 0 | 1 | 239 | 78 | 316 | 3.17e-159 | 444 |
MS.gene54556.t1 | MTR_3g017590 | 83.830 | 235 | 38 | 0 | 1 | 235 | 70 | 304 | 2.67e-153 | 428 |
MS.gene54556.t1 | MTR_8g038370 | 78.298 | 235 | 51 | 0 | 1 | 235 | 129 | 363 | 1.31e-145 | 411 |
MS.gene54556.t1 | MTR_7g093600 | 78.632 | 234 | 50 | 0 | 1 | 234 | 76 | 309 | 3.71e-142 | 400 |
MS.gene54556.t1 | MTR_1g054335 | 77.447 | 235 | 53 | 0 | 1 | 235 | 75 | 309 | 2.89e-140 | 395 |
MS.gene54556.t1 | MTR_5g076660 | 32.667 | 150 | 95 | 3 | 1 | 150 | 50 | 193 | 8.19e-17 | 78.6 |
MS.gene54556.t1 | MTR_7g024290 | 26.042 | 192 | 132 | 4 | 1 | 192 | 28 | 209 | 9.94e-16 | 75.5 |
MS.gene54556.t1 | MTR_5g067400 | 33.607 | 122 | 79 | 2 | 1 | 121 | 28 | 148 | 5.03e-15 | 73.6 |
MS.gene54556.t1 | MTR_4g094468 | 27.000 | 200 | 125 | 7 | 1 | 195 | 114 | 297 | 4.26e-14 | 70.9 |
MS.gene54556.t1 | MTR_2g038430 | 33.036 | 112 | 70 | 2 | 1 | 109 | 42 | 151 | 1.44e-13 | 69.3 |
MS.gene54556.t1 | MTR_5g076370 | 25.551 | 227 | 153 | 6 | 1 | 227 | 51 | 261 | 1.66e-13 | 69.3 |
MS.gene54556.t1 | MTR_7g094390 | 36.364 | 99 | 61 | 1 | 1 | 99 | 189 | 285 | 2.60e-13 | 68.9 |
MS.gene54556.t1 | MTR_5g061290 | 32.479 | 117 | 73 | 4 | 1 | 116 | 35 | 146 | 6.86e-13 | 67.4 |
MS.gene54556.t1 | MTR_5g076540 | 32.903 | 155 | 88 | 5 | 1 | 150 | 28 | 171 | 1.37e-12 | 65.5 |
MS.gene54556.t1 | MTR_5g076720 | 33.036 | 112 | 70 | 2 | 1 | 109 | 99 | 208 | 2.30e-12 | 66.2 |
MS.gene54556.t1 | MTR_5g076505 | 29.677 | 155 | 93 | 5 | 1 | 150 | 24 | 167 | 2.87e-12 | 65.5 |
MS.gene54556.t1 | MTR_1g046650 | 34.343 | 99 | 62 | 2 | 1 | 99 | 28 | 123 | 2.57e-11 | 62.8 |
MS.gene54556.t1 | MTR_5g076520 | 32.258 | 155 | 89 | 5 | 1 | 150 | 28 | 171 | 4.19e-11 | 62.0 |
MS.gene54556.t1 | MTR_1g046650 | 34.343 | 99 | 62 | 2 | 1 | 99 | 59 | 154 | 4.35e-11 | 62.4 |
MS.gene54556.t1 | MTR_2g038420 | 29.310 | 116 | 79 | 2 | 1 | 116 | 42 | 154 | 4.82e-11 | 62.0 |
MS.gene54556.t1 | MTR_1g046650 | 34.343 | 99 | 62 | 2 | 1 | 99 | 28 | 123 | 5.61e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54556.t1 | AT3G61790 | 92.946 | 241 | 17 | 0 | 1 | 241 | 77 | 317 | 1.82e-172 | 478 |
MS.gene54556.t1 | AT4G27880 | 90.041 | 241 | 24 | 0 | 1 | 241 | 78 | 318 | 5.96e-170 | 471 |
MS.gene54556.t1 | AT3G58040 | 82.553 | 235 | 41 | 0 | 1 | 235 | 74 | 308 | 1.36e-148 | 417 |
MS.gene54556.t1 | AT3G58040 | 82.553 | 235 | 41 | 0 | 1 | 235 | 74 | 308 | 1.36e-148 | 417 |
MS.gene54556.t1 | AT5G53360 | 90.952 | 210 | 19 | 0 | 32 | 241 | 15 | 224 | 5.58e-148 | 412 |
MS.gene54556.t1 | AT5G53360 | 90.952 | 210 | 19 | 0 | 32 | 241 | 15 | 224 | 5.58e-148 | 412 |
MS.gene54556.t1 | AT2G41980 | 80.426 | 235 | 46 | 0 | 1 | 235 | 71 | 305 | 2.76e-145 | 408 |
MS.gene54556.t1 | AT3G58040 | 76.596 | 141 | 30 | 1 | 1 | 138 | 74 | 214 | 4.65e-75 | 227 |
MS.gene54556.t1 | AT5G53360 | 91.071 | 112 | 10 | 0 | 130 | 241 | 60 | 171 | 1.27e-74 | 224 |
MS.gene54556.t1 | AT3G13672 | 58.333 | 168 | 67 | 1 | 71 | 235 | 45 | 212 | 1.37e-72 | 221 |
MS.gene54556.t1 | AT3G13672 | 50.769 | 195 | 66 | 2 | 71 | 235 | 45 | 239 | 5.02e-67 | 207 |
MS.gene54556.t1 | AT5G37870 | 40.000 | 110 | 63 | 2 | 1 | 110 | 59 | 165 | 2.69e-19 | 84.7 |
MS.gene54556.t1 | AT5G37930 | 40.777 | 103 | 59 | 1 | 1 | 103 | 127 | 227 | 4.51e-18 | 82.4 |
MS.gene54556.t1 | AT5G37890 | 26.638 | 229 | 153 | 6 | 1 | 227 | 65 | 280 | 1.58e-16 | 77.4 |
MS.gene54556.t1 | AT5G62800 | 25.738 | 237 | 148 | 7 | 1 | 227 | 57 | 275 | 1.22e-15 | 75.5 |
MS.gene54556.t1 | AT5G62800 | 25.532 | 188 | 132 | 4 | 1 | 186 | 57 | 238 | 2.85e-15 | 73.9 |
MS.gene54556.t1 | AT1G66660 | 40.426 | 94 | 54 | 1 | 1 | 94 | 120 | 211 | 8.44e-15 | 73.2 |
MS.gene54556.t1 | AT1G66650 | 37.255 | 102 | 61 | 2 | 1 | 101 | 100 | 199 | 1.80e-14 | 72.0 |
MS.gene54556.t1 | AT5G37910 | 34.951 | 103 | 65 | 1 | 1 | 103 | 52 | 152 | 6.66e-13 | 67.0 |
MS.gene54556.t1 | AT1G66620 | 35.354 | 99 | 62 | 1 | 1 | 99 | 58 | 154 | 8.84e-13 | 67.0 |
MS.gene54556.t1 | AT1G66630 | 37.500 | 104 | 61 | 2 | 1 | 102 | 63 | 164 | 3.66e-12 | 65.1 |
Find 66 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTAGTATGGAAAGATTTC+TGG | 0.159871 | 1.1:-11513780 | None:intergenic |
TGATAGGTATTTCATTGTTT+TGG | 0.211856 | 1.1:+11514348 | MS.gene54556:intron |
CCTCATAATTCAACGAAATA+TGG | 0.309243 | 1.1:+11514578 | MS.gene54556:CDS |
TGCTTCAGCTTGCTGTAGTA+TGG | 0.315397 | 1.1:-11513792 | None:intergenic |
TAAGAGTCACAGGAAGAATA+TGG | 0.339068 | 1.1:+11514640 | MS.gene54556:CDS |
CGAAGGAATGCCATGTAAAC+TGG | 0.349784 | 1.1:-11514417 | None:intergenic |
CATGGCATTCCTTCGTTTCA+TGG | 0.350645 | 1.1:+11514425 | MS.gene54556:CDS |
AGCCTCGAGGTTGGGGCAAA+TGG | 0.361379 | 1.1:+11514480 | MS.gene54556:CDS |
CAAATGGAAGAAAACTCATT+TGG | 0.371206 | 1.1:+11514496 | MS.gene54556:CDS |
ATACCTACAGCCTCGAGGTT+GGG | 0.402306 | 1.1:+11514472 | MS.gene54556:CDS |
CCATATTTCGTTGAATTATG+AGG | 0.425488 | 1.1:-11514578 | None:intergenic |
TAGGTGTCTGGCACTGGAAA+AGG | 0.426106 | 1.1:+11513710 | MS.gene54556:CDS |
CCATGCAAATACTACTCTCT+TGG | 0.426909 | 1.1:+11513753 | MS.gene54556:CDS |
AGATATTAGGTGTCTGGCAC+TGG | 0.427576 | 1.1:+11513704 | MS.gene54556:CDS |
GGTATACAAACCCCACCATC+TGG | 0.433787 | 1.1:-11514678 | None:intergenic |
GACAAGAGCTTGGAGATATT+AGG | 0.446367 | 1.1:+11513691 | MS.gene54556:CDS |
TTTCCTCGTTGCACATTTGA+GGG | 0.453343 | 1.1:+11513890 | MS.gene54556:CDS |
ATTTCCTCGTTGCACATTTG+AGG | 0.454644 | 1.1:+11513889 | MS.gene54556:CDS |
CAAAGTGAAGGCAGAAGTAT+TGG | 0.460533 | 1.1:-11514371 | None:intergenic |
ACATTTGAGGGACGATCATA+AGG | 0.461663 | 1.1:+11513902 | MS.gene54556:CDS |
ATCTCCAAGCTCTTGTCTAC+AGG | 0.469456 | 1.1:-11513685 | None:intergenic |
AAATGGAAGAAAACTCATTT+GGG | 0.470132 | 1.1:+11514497 | MS.gene54556:CDS |
CACTTTGAAGCTTTCCAGCT+AGG | 0.473624 | 1.1:+11514387 | MS.gene54556:CDS |
AAACTGGAGCCATGCCTAGC+TGG | 0.474045 | 1.1:-11514401 | None:intergenic |
GCTTGGAGATATTAGGTGTC+TGG | 0.474212 | 1.1:+11513698 | MS.gene54556:CDS |
ATGGCATTCCTTCGTTTCAT+GGG | 0.491316 | 1.1:+11514426 | MS.gene54556:CDS |
TACCTACAGCCTCGAGGTTG+GGG | 0.519942 | 1.1:+11514473 | MS.gene54556:CDS |
CAGTTCCTTCCTATCACCAC+CGG | 0.520559 | 1.1:-11514613 | None:intergenic |
CCATACACTTGTCCTTATGC+TGG | 0.527298 | 1.1:+11513837 | MS.gene54556:CDS |
GAACTGAAATTAAGAGTCAC+AGG | 0.528820 | 1.1:+11514630 | MS.gene54556:CDS |
GAGCACTCTGATCCAGCATA+AGG | 0.535134 | 1.1:-11513849 | None:intergenic |
AGGCATGGCTCCAGTTTACA+TGG | 0.535252 | 1.1:+11514407 | MS.gene54556:CDS |
CCAGCATAAGGACAAGTGTA+TGG | 0.536800 | 1.1:-11513837 | None:intergenic |
TGAAGCTTTCCAGCTAGGCA+TGG | 0.545484 | 1.1:+11514392 | MS.gene54556:CDS |
TTTCTCCGGTGGTGATAGGA+AGG | 0.551436 | 1.1:+11514608 | MS.gene54556:CDS |
AACAACAGAATCCAGATGGT+GGG | 0.552181 | 1.1:+11514667 | MS.gene54556:CDS |
TATACCTACAGCCTCGAGGT+TGG | 0.558753 | 1.1:+11514471 | MS.gene54556:CDS |
GGATCAGAGTGCTCTGCTGT+TGG | 0.562708 | 1.1:+11513858 | MS.gene54556:CDS |
CCGACCTGTAGACAAGAGCT+TGG | 0.568050 | 1.1:+11513681 | MS.gene54556:CDS |
GTGAAGTAGAGAATGCTACT+TGG | 0.568738 | 1.1:+11513979 | MS.gene54556:CDS |
TGGGAGACGAGAACGAGGCT+CGG | 0.575368 | 1.1:+11514445 | MS.gene54556:CDS |
TTCCATTTGCCCCAACCTCG+AGG | 0.594074 | 1.1:-11514482 | None:intergenic |
CCAAGAGAGTAGTATTTGCA+TGG | 0.602573 | 1.1:-11513753 | None:intergenic |
TGGAAGAAAACTCATTTGGG+AGG | 0.602668 | 1.1:+11514500 | MS.gene54556:CDS |
GAACAACAGAATCCAGATGG+TGG | 0.613047 | 1.1:+11514666 | MS.gene54556:CDS |
GCTGGAAAGCTTCAAAGTGA+AGG | 0.613710 | 1.1:-11514383 | None:intergenic |
ACAACAGAATCCAGATGGTG+GGG | 0.614888 | 1.1:+11514668 | MS.gene54556:CDS |
GGAAGAAAACTCATTTGGGA+GGG | 0.623722 | 1.1:+11514501 | MS.gene54556:CDS |
CATAAGGTGGACATGCACAC+AGG | 0.632218 | 1.1:+11513918 | MS.gene54556:CDS |
TTTCATGGGAGACGAGAACG+AGG | 0.636980 | 1.1:+11514440 | MS.gene54556:CDS |
TGTGTTCCACATGTAAAACA+AGG | 0.639674 | 1.1:+11513643 | MS.gene54556:CDS |
TGCCCCAACCTCGAGGCTGT+AGG | 0.640496 | 1.1:-11514475 | None:intergenic |
AAAGAACAACAGAATCCAGA+TGG | 0.642877 | 1.1:+11514663 | MS.gene54556:CDS |
GATTTGACTTCACGTAACGA+TGG | 0.651834 | 1.1:-11513953 | None:intergenic |
AAAGTTCGAGATAGTCATGA+CGG | 0.664593 | 1.1:+11514555 | MS.gene54556:CDS |
CCAAGCTCTTGTCTACAGGT+CGG | 0.665523 | 1.1:-11513681 | None:intergenic |
GCTTTCTTGCAGTGCCACAA+CGG | 0.673342 | 1.1:+11513612 | None:intergenic |
TCTCGTCTCCCATGAAACGA+AGG | 0.676802 | 1.1:-11514434 | None:intergenic |
TGGCTATCGCGGATACTCCG+TGG | 0.686071 | 1.1:-11514528 | None:intergenic |
TTTGAGGGACGATCATAAGG+TGG | 0.697457 | 1.1:+11513905 | MS.gene54556:CDS |
GTGTTCCACATGTAAAACAA+GGG | 0.699010 | 1.1:+11513644 | MS.gene54556:CDS |
GAACTATACCTACAGCCTCG+AGG | 0.705784 | 1.1:+11514467 | MS.gene54556:CDS |
CGTCCCTCAAATGTGCAACG+AGG | 0.714067 | 1.1:-11513893 | None:intergenic |
GTAGCATTCTCTACTTCACG+CGG | 0.721685 | 1.1:-11513975 | None:intergenic |
AACACAATGTGTGACCGTTG+TGG | 0.724979 | 1.1:-11513626 | None:intergenic |
TCATTTGGGAGGGTACACCA+CGG | 0.762771 | 1.1:+11514511 | MS.gene54556:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAAATCTATATTTGTAA+CGG | - | chr1.1:11514075-11514094 | None:intergenic | 15.0% |
!! | AATACCTATCAAAGAAAAAA+TGG | - | chr1.1:11514339-11514358 | None:intergenic | 20.0% |
! | AAATGGAAGAAAACTCATTT+GGG | + | chr1.1:11514497-11514516 | MS.gene54556:CDS | 25.0% |
! | ATCAAAGAAAAAATGGAAGT+TGG | - | chr1.1:11514332-11514351 | None:intergenic | 25.0% |
!! | TAATGTGCAACTTTGTATTT+TGG | + | chr1.1:11514137-11514156 | MS.gene54556:intron | 25.0% |
!! | TGATAGGTATTTCATTGTTT+TGG | + | chr1.1:11514348-11514367 | MS.gene54556:intron | 25.0% |
!!! | ACTTCCATTTTTTCTTTGAT+AGG | + | chr1.1:11514332-11514351 | MS.gene54556:intron | 25.0% |
CAAATGGAAGAAAACTCATT+TGG | + | chr1.1:11514496-11514515 | MS.gene54556:CDS | 30.0% | |
CCATATTTCGTTGAATTATG+AGG | - | chr1.1:11514581-11514600 | None:intergenic | 30.0% | |
CCTCATAATTCAACGAAATA+TGG | + | chr1.1:11514578-11514597 | MS.gene54556:CDS | 30.0% | |
AAAGAACAACAGAATCCAGA+TGG | + | chr1.1:11514663-11514682 | MS.gene54556:CDS | 35.0% | |
AAAGTTCGAGATAGTCATGA+CGG | + | chr1.1:11514555-11514574 | MS.gene54556:CDS | 35.0% | |
ACTGTCAGATCAAGATCAAA+TGG | - | chr1.1:11514191-11514210 | None:intergenic | 35.0% | |
CTGTAGTATGGAAAGATTTC+TGG | - | chr1.1:11513783-11513802 | None:intergenic | 35.0% | |
GAACTGAAATTAAGAGTCAC+AGG | + | chr1.1:11514630-11514649 | MS.gene54556:CDS | 35.0% | |
GTGTTCCACATGTAAAACAA+GGG | + | chr1.1:11513644-11513663 | MS.gene54556:CDS | 35.0% | |
TAAGAGTCACAGGAAGAATA+TGG | + | chr1.1:11514640-11514659 | MS.gene54556:CDS | 35.0% | |
TGTGTTCCACATGTAAAACA+AGG | + | chr1.1:11513643-11513662 | MS.gene54556:CDS | 35.0% | |
! | CATGACTATCTCGAACTTTT+CGG | - | chr1.1:11514554-11514573 | None:intergenic | 35.0% |
!! | AATATGGCCCTATTTTTCTC+CGG | + | chr1.1:11514594-11514613 | MS.gene54556:CDS | 35.0% |
AACAACAGAATCCAGATGGT+GGG | + | chr1.1:11514667-11514686 | MS.gene54556:CDS | 40.0% | |
AACGGCACATATTTGACAGA+GGG | - | chr1.1:11514057-11514076 | None:intergenic | 40.0% | |
AATGGCTCGTGTTTCAACTT+TGG | - | chr1.1:11514173-11514192 | None:intergenic | 40.0% | |
ACATTTGAGGGACGATCATA+AGG | + | chr1.1:11513902-11513921 | MS.gene54556:CDS | 40.0% | |
ATCACCACCGGAGAAAAATA+GGG | - | chr1.1:11514604-11514623 | None:intergenic | 40.0% | |
ATCACCAGATCAAGATTGGA+CGG | + | chr1.1:11514113-11514132 | MS.gene54556:intron | 40.0% | |
ATGGCATTCCTTCGTTTCAT+GGG | + | chr1.1:11514426-11514445 | MS.gene54556:CDS | 40.0% | |
ATTTCCTCGTTGCACATTTG+AGG | + | chr1.1:11513889-11513908 | MS.gene54556:CDS | 40.0% | |
CACAATCACCAGATCAAGAT+TGG | + | chr1.1:11514109-11514128 | MS.gene54556:intron | 40.0% | |
CCAAGAGAGTAGTATTTGCA+TGG | - | chr1.1:11513756-11513775 | None:intergenic | 40.0% | |
CCATGCAAATACTACTCTCT+TGG | + | chr1.1:11513753-11513772 | MS.gene54556:CDS | 40.0% | |
GACAAGAGCTTGGAGATATT+AGG | + | chr1.1:11513691-11513710 | MS.gene54556:CDS | 40.0% | |
GGAAGAAAACTCATTTGGGA+GGG | + | chr1.1:11514501-11514520 | MS.gene54556:CDS | 40.0% | |
GTGAAGTAGAGAATGCTACT+TGG | + | chr1.1:11513979-11513998 | MS.gene54556:CDS | 40.0% | |
TAACGGCACATATTTGACAG+AGG | - | chr1.1:11514058-11514077 | None:intergenic | 40.0% | |
TATCACCACCGGAGAAAAAT+AGG | - | chr1.1:11514605-11514624 | None:intergenic | 40.0% | |
TGGAAGAAAACTCATTTGGG+AGG | + | chr1.1:11514500-11514519 | MS.gene54556:CDS | 40.0% | |
TTTCCTCGTTGCACATTTGA+GGG | + | chr1.1:11513890-11513909 | MS.gene54556:CDS | 40.0% | |
! | CAAAGTGAAGGCAGAAGTAT+TGG | - | chr1.1:11514374-11514393 | None:intergenic | 40.0% |
! | GATTTGACTTCACGTAACGA+TGG | - | chr1.1:11513956-11513975 | None:intergenic | 40.0% |
! | TATTTTTCTCCGGTGGTGAT+AGG | + | chr1.1:11514604-11514623 | MS.gene54556:CDS | 40.0% |
AACACAATGTGTGACCGTTG+TGG | - | chr1.1:11513629-11513648 | None:intergenic | 45.0% | |
ACTCGTCAGCTCGTTATTCA+CGG | - | chr1.1:11514227-11514246 | None:intergenic | 45.0% | |
AGATATTAGGTGTCTGGCAC+TGG | + | chr1.1:11513704-11513723 | MS.gene54556:CDS | 45.0% | |
ATCTCCAAGCTCTTGTCTAC+AGG | - | chr1.1:11513688-11513707 | None:intergenic | 45.0% | |
CATGGCATTCCTTCGTTTCA+TGG | + | chr1.1:11514425-11514444 | MS.gene54556:CDS | 45.0% | |
CCAGCATAAGGACAAGTGTA+TGG | - | chr1.1:11513840-11513859 | None:intergenic | 45.0% | |
CCATACACTTGTCCTTATGC+TGG | + | chr1.1:11513837-11513856 | MS.gene54556:CDS | 45.0% | |
CGAAGGAATGCCATGTAAAC+TGG | - | chr1.1:11514420-11514439 | None:intergenic | 45.0% | |
GAACAACAGAATCCAGATGG+TGG | + | chr1.1:11514666-11514685 | MS.gene54556:CDS | 45.0% | |
GCTGGAAAGCTTCAAAGTGA+AGG | - | chr1.1:11514386-11514405 | None:intergenic | 45.0% | |
GCTTGGAGATATTAGGTGTC+TGG | + | chr1.1:11513698-11513717 | MS.gene54556:CDS | 45.0% | |
GTAGCATTCTCTACTTCACG+CGG | - | chr1.1:11513978-11513997 | None:intergenic | 45.0% | |
TTAGCCGTCCAATCTTGATC+TGG | - | chr1.1:11514120-11514139 | None:intergenic | 45.0% | |
TTTGAGGGACGATCATAAGG+TGG | + | chr1.1:11513905-11513924 | MS.gene54556:CDS | 45.0% | |
! | GACTATCTCGAACTTTTCGG+TGG | - | chr1.1:11514551-11514570 | None:intergenic | 45.0% |
!! | CACTTTGAAGCTTTCCAGCT+AGG | + | chr1.1:11514387-11514406 | MS.gene54556:CDS | 45.0% |
!! | TGCTTCAGCTTGCTGTAGTA+TGG | - | chr1.1:11513795-11513814 | None:intergenic | 45.0% |
!!! | GTGCACCCTTGTTTTACATG+TGG | - | chr1.1:11513652-11513671 | None:intergenic | 45.0% |
AGGCATGGCTCCAGTTTACA+TGG | + | chr1.1:11514407-11514426 | MS.gene54556:CDS | 50.0% | |
ATACCTACAGCCTCGAGGTT+GGG | + | chr1.1:11514472-11514491 | MS.gene54556:CDS | 50.0% | |
CAGTTCCTTCCTATCACCAC+CGG | - | chr1.1:11514616-11514635 | None:intergenic | 50.0% | |
CATAAGGTGGACATGCACAC+AGG | + | chr1.1:11513918-11513937 | MS.gene54556:CDS | 50.0% | |
CCAAGCTCTTGTCTACAGGT+CGG | - | chr1.1:11513684-11513703 | None:intergenic | 50.0% | |
GAACTATACCTACAGCCTCG+AGG | + | chr1.1:11514467-11514486 | MS.gene54556:CDS | 50.0% | |
GAGCACTCTGATCCAGCATA+AGG | - | chr1.1:11513852-11513871 | None:intergenic | 50.0% | |
TATACCTACAGCCTCGAGGT+TGG | + | chr1.1:11514471-11514490 | MS.gene54556:CDS | 50.0% | |
TCTCGTCTCCCATGAAACGA+AGG | - | chr1.1:11514437-11514456 | None:intergenic | 50.0% | |
TGAAGCTTTCCAGCTAGGCA+TGG | + | chr1.1:11514392-11514411 | MS.gene54556:CDS | 50.0% | |
TTTCATGGGAGACGAGAACG+AGG | + | chr1.1:11514440-11514459 | MS.gene54556:CDS | 50.0% | |
TTTCTCCGGTGGTGATAGGA+AGG | + | chr1.1:11514608-11514627 | MS.gene54556:CDS | 50.0% | |
! | GAACTTTTCGGTGGCTATCG+CGG | - | chr1.1:11514542-11514561 | None:intergenic | 50.0% |
! | TAGGTGTCTGGCACTGGAAA+AGG | + | chr1.1:11513710-11513729 | MS.gene54556:CDS | 50.0% |
! | TCATTTGGGAGGGTACACCA+CGG | + | chr1.1:11514511-11514530 | MS.gene54556:CDS | 50.0% |
!! | ATGGCCCTATTTTTCTCCGG+TGG | + | chr1.1:11514597-11514616 | MS.gene54556:CDS | 50.0% |
AAACTGGAGCCATGCCTAGC+TGG | - | chr1.1:11514404-11514423 | None:intergenic | 55.0% | |
CCGACCTGTAGACAAGAGCT+TGG | + | chr1.1:11513681-11513700 | MS.gene54556:CDS | 55.0% | |
CGTCCCTCAAATGTGCAACG+AGG | - | chr1.1:11513896-11513915 | None:intergenic | 55.0% | |
TACCTACAGCCTCGAGGTTG+GGG | + | chr1.1:11514473-11514492 | MS.gene54556:CDS | 55.0% | |
TTCCATTTGCCCCAACCTCG+AGG | - | chr1.1:11514485-11514504 | None:intergenic | 55.0% | |
! | GGATCAGAGTGCTCTGCTGT+TGG | + | chr1.1:11513858-11513877 | MS.gene54556:CDS | 55.0% |
AGCCTCGAGGTTGGGGCAAA+TGG | + | chr1.1:11514480-11514499 | MS.gene54556:CDS | 60.0% | |
TGGCTATCGCGGATACTCCG+TGG | - | chr1.1:11514531-11514550 | None:intergenic | 60.0% | |
TGGGAGACGAGAACGAGGCT+CGG | + | chr1.1:11514445-11514464 | MS.gene54556:CDS | 60.0% | |
TGCCCCAACCTCGAGGCTGT+AGG | - | chr1.1:11514478-11514497 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 11513624 | 11514689 | 11513624 | ID=MS.gene54556 |
chr1.1 | mRNA | 11513624 | 11514689 | 11513624 | ID=MS.gene54556.t1;Parent=MS.gene54556 |
chr1.1 | exon | 11513624 | 11514010 | 11513624 | ID=MS.gene54556.t1.exon1;Parent=MS.gene54556.t1 |
chr1.1 | CDS | 11513624 | 11514010 | 11513624 | ID=cds.MS.gene54556.t1;Parent=MS.gene54556.t1 |
chr1.1 | exon | 11514354 | 11514689 | 11514354 | ID=MS.gene54556.t1.exon2;Parent=MS.gene54556.t1 |
chr1.1 | CDS | 11514354 | 11514689 | 11514354 | ID=cds.MS.gene54556.t1;Parent=MS.gene54556.t1 |
Gene Sequence |
Protein sequence |