Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54612.t1 | XP_003611381.1 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 4.40E-112 | 414.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54612.t1 | Q9LD45 | 70.3 | 229 | 65 | 1 | 1 | 226 | 1 | 229 | 8.4e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54612.t1 | G7JYK5 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 3.1e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052053 | MS.gene54612 | 0.800425 | 1.45E-48 | -1.69E-46 |
| MS.gene055549 | MS.gene54612 | 0.811341 | 7.35E-51 | -1.69E-46 |
| MS.gene055550 | MS.gene54612 | 0.822225 | 2.65E-53 | -1.69E-46 |
| MS.gene056530 | MS.gene54612 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene05884 | MS.gene54612 | 0.851882 | 6.65E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54612.t1 | MTR_5g013340 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 3.45e-153 | 425 |
| MS.gene54612.t1 | MTR_5g013340 | 94.350 | 177 | 10 | 0 | 1 | 177 | 1 | 177 | 7.40e-115 | 327 |
| MS.gene54612.t1 | MTR_6g083250 | 85.075 | 134 | 20 | 0 | 34 | 167 | 27 | 160 | 4.70e-78 | 233 |
| MS.gene54612.t1 | MTR_4g099430 | 51.786 | 168 | 47 | 5 | 13 | 176 | 28 | 165 | 6.41e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54612.t1 | AT5G47120 | 70.130 | 231 | 66 | 1 | 1 | 228 | 1 | 231 | 2.56e-109 | 314 |
| MS.gene54612.t1 | AT4G17580 | 50.661 | 227 | 97 | 2 | 14 | 227 | 8 | 232 | 1.55e-71 | 219 |
| MS.gene54612.t1 | AT5G47130 | 47.005 | 217 | 103 | 3 | 17 | 228 | 2 | 211 | 8.57e-64 | 198 |
| MS.gene54612.t1 | AT5G47130 | 46.734 | 199 | 94 | 3 | 35 | 228 | 2 | 193 | 1.83e-55 | 176 |
| MS.gene54612.t1 | AT5G47130 | 47.458 | 177 | 81 | 3 | 57 | 228 | 3 | 172 | 1.26e-49 | 160 |
Find 63 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTGGCTTGGTTTCTTC+TGG | 0.110151 | 5.3:+6442019 | MS.gene54612:CDS |
| TCGCAACTGCCTTGGCTTTC+GGG | 0.124016 | 5.3:+6441948 | MS.gene54612:CDS |
| CACTTTGCTTCTGCCATCTT+TGG | 0.129193 | 5.3:+6442064 | MS.gene54612:CDS |
| CTACATTTGCAGTTGTATTT+TGG | 0.131459 | 5.3:+6442204 | MS.gene54612:intron |
| GTCGCAACTGCCTTGGCTTT+CGG | 0.172277 | 5.3:+6441947 | MS.gene54612:CDS |
| GATGGCCGCGGCAATGTTTC+AGG | 0.202705 | 5.3:+6441348 | MS.gene54612:CDS |
| CCTGACCTTGTTTACTGATT+TGG | 0.272374 | 5.3:+6442317 | MS.gene54612:CDS |
| CTTGGCTTTCGGGTGTTTCT+CGG | 0.282337 | 5.3:+6441958 | MS.gene54612:CDS |
| ATGTTTCAGGGTGCTTCTAT+TGG | 0.319086 | 5.3:+6441361 | MS.gene54612:CDS |
| TATTGGACCCTTGATTAATT+CGG | 0.322576 | 5.3:+6441378 | MS.gene54612:CDS |
| TGCCATCTTTGGAGGTTCAA+TGG | 0.338989 | 5.3:+6442075 | MS.gene54612:CDS |
| TTGGTGGCTTGGTTTCTTCT+GGG | 0.360140 | 5.3:+6442020 | MS.gene54612:CDS |
| GTACCTCTACCTTGGTGGCT+TGG | 0.360734 | 5.3:+6442009 | MS.gene54612:CDS |
| GTGTTTCTCGGGAGCAGCTT+TGG | 0.393747 | 5.3:+6441970 | MS.gene54612:CDS |
| AAAGAGGTTGACTTTGTTGA+TGG | 0.398644 | 5.3:+6441330 | MS.gene54612:CDS |
| TTGGCTTTCGGGTGTTTCTC+GGG | 0.400338 | 5.3:+6441959 | MS.gene54612:CDS |
| TTTGCTTCTGCCATCTTTGG+AGG | 0.415758 | 5.3:+6442067 | MS.gene54612:CDS |
| AATGGCTCTCGTTAAGTTTG+AGG | 0.419587 | 5.3:+6442093 | MS.gene54612:CDS |
| TTCATTTGTCGCAACTGCCT+TGG | 0.420717 | 5.3:+6441940 | MS.gene54612:CDS |
| CCAAATCAGTAAACAAGGTC+AGG | 0.425444 | 5.3:-6442317 | None:intergenic |
| CTGGGTTGTCCATTCTTATG+TGG | 0.437083 | 5.3:+6442038 | MS.gene54612:CDS |
| GCTGTGGTGGCTGCTTCTGT+TGG | 0.440092 | 5.3:+6441097 | MS.gene54612:CDS |
| CAGCTTTGGTTGCTAAGCGC+AGG | 0.458313 | 5.3:+6441984 | MS.gene54612:CDS |
| CGTTCAGAATCATCTCAAAC+AGG | 0.459060 | 5.3:+6440680 | MS.gene54612:CDS |
| ATGGCCGCGGCAATGTTTCA+GGG | 0.465472 | 5.3:+6441349 | MS.gene54612:CDS |
| GAAATCCATACCTCTTCAAA+AGG | 0.471008 | 5.3:-6441208 | None:intergenic |
| TTGAATAGCCGAATTAATCA+AGG | 0.480018 | 5.3:-6441386 | None:intergenic |
| CGTGTGTGGGAATTAGTGTT+TGG | 0.486280 | 5.3:+6441170 | MS.gene54612:CDS |
| CTCCATGTCCTTCTCAACAT+TGG | 0.493334 | 5.3:+6441127 | MS.gene54612:CDS |
| CATGTCCTTCTCAACATTGG+TGG | 0.511225 | 5.3:+6441130 | MS.gene54612:CDS |
| TCTTACCACAATTGCGTGTG+TGG | 0.522216 | 5.3:+6441156 | MS.gene54612:CDS |
| GTTGACTTTGTTGATGGCCG+CGG | 0.524903 | 5.3:+6441336 | MS.gene54612:CDS |
| GACCTTGTGTTTCGCTGTGG+TGG | 0.526552 | 5.3:+6441084 | MS.gene54612:CDS |
| TTTATGGTATGCAGCGAAAG+AGG | 0.532864 | 5.3:+6441314 | MS.gene54612:intron |
| AGCCATTGAACCTCCAAAGA+TGG | 0.536659 | 5.3:-6442077 | None:intergenic |
| CGAGAAACACCCGAAAGCCA+AGG | 0.557128 | 5.3:-6441957 | None:intergenic |
| AGCTTTGGTTGCTAAGCGCA+GGG | 0.566850 | 5.3:+6441985 | MS.gene54612:CDS |
| AAACCAAGCCACCAAGGTAG+AGG | 0.568434 | 5.3:-6442012 | None:intergenic |
| TTACAATGATGAGTAGAATC+CGG | 0.571426 | 5.3:-6442353 | None:intergenic |
| AGGGAGTACCTCTACCTTGG+TGG | 0.572036 | 5.3:+6442004 | MS.gene54612:CDS |
| ATAGTTGAGAAGGCACACTT+TGG | 0.576217 | 5.3:+6442270 | MS.gene54612:CDS |
| AGCCACCACAGCGAAACACA+AGG | 0.576748 | 5.3:-6441086 | None:intergenic |
| TCTTCGATTCAACACCTCGA+TGG | 0.580588 | 5.3:+6440616 | MS.gene54612:CDS |
| CGCAGGGAGTACCTCTACCT+TGG | 0.582527 | 5.3:+6442001 | MS.gene54612:CDS |
| CGGCTATTCAAGTCGATCCA+AGG | 0.582719 | 5.3:+6441398 | MS.gene54612:CDS |
| GAATACCACCAATGTTGAGA+AGG | 0.591899 | 5.3:-6441135 | None:intergenic |
| AAAGTGCAACCACATAAGAA+TGG | 0.591952 | 5.3:-6442047 | None:intergenic |
| ATCCATACCTCTTCAAAAGG+AGG | 0.597690 | 5.3:-6441205 | None:intergenic |
| AATTCCCACACACGCAATTG+TGG | 0.599033 | 5.3:-6441161 | None:intergenic |
| CACGCAAGAAATAGTTGAGA+AGG | 0.601852 | 5.3:+6442260 | MS.gene54612:CDS |
| CTTACCACAATTGCGTGTGT+GGG | 0.603529 | 5.3:+6441157 | MS.gene54612:CDS |
| TGCAACCAAATCAGTAAACA+AGG | 0.603621 | 5.3:-6442322 | None:intergenic |
| CAGAAGAAACCAAGCCACCA+AGG | 0.620970 | 5.3:-6442018 | None:intergenic |
| GTTTGAGATGATTCTGAACG+CGG | 0.622509 | 5.3:-6440677 | None:intergenic |
| TTTGAGATGATTCTGAACGC+GGG | 0.635009 | 5.3:-6440676 | None:intergenic |
| CACCAATGTTGAGAAGGACA+TGG | 0.637929 | 5.3:-6441129 | None:intergenic |
| CAAATCAGTAAACAAGGTCA+GGG | 0.638032 | 5.3:-6442316 | None:intergenic |
| TTGAGATGATTCTGAACGCG+GGG | 0.639066 | 5.3:-6440675 | None:intergenic |
| TGAATAGCCGAATTAATCAA+GGG | 0.652441 | 5.3:-6441385 | None:intergenic |
| AGCACCCTGAAACATTGCCG+CGG | 0.662260 | 5.3:-6441353 | None:intergenic |
| TTTGACCTTGTGTTTCGCTG+TGG | 0.664849 | 5.3:+6441081 | MS.gene54612:CDS |
| CAATGTTGAGAAGGACATGG+AGG | 0.708038 | 5.3:-6441126 | None:intergenic |
| AGAGTATTGAAATTCCATCG+AGG | 0.736875 | 5.3:-6440630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATAATATAATTTTAGTTT+TGG | + | chr5.3:6441871-6441890 | MS.gene54612:intron | 10.0% |
| !! | AATTAAGTTAATGAAATCAT+TGG | + | chr5.3:6440969-6440988 | MS.gene54612:intron | 15.0% |
| !! | ATAAAAATAATGAAACAAAC+AGG | - | chr5.3:6441299-6441318 | None:intergenic | 15.0% |
| !!! | AAAGAATTAGCAATATTTTT+AGG | - | chr5.3:6441775-6441794 | None:intergenic | 15.0% |
| !!! | AAGAATTAGCAATATTTTTA+GGG | - | chr5.3:6441774-6441793 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTCATTATTTTTA+TGG | + | chr5.3:6441298-6441317 | MS.gene54612:intron | 15.0% |
| !!! | TTTGTTTTTATAATGCTATA+AGG | + | chr5.3:6442161-6442180 | MS.gene54612:intron | 15.0% |
| !!! | TTTTAGTTTTCTAATAAAAG+AGG | + | chr5.3:6442698-6442717 | MS.gene54612:intron | 15.0% |
| !! | CCTGTAATCTTAAAAAATAA+TGG | - | chr5.3:6442734-6442753 | None:intergenic | 20.0% |
| !! | GTATACTTTCATTATATTTG+TGG | + | chr5.3:6441420-6441439 | MS.gene54612:intron | 20.0% |
| !! | TATATATGCTACATGAATAT+AGG | - | chr5.3:6441522-6441541 | None:intergenic | 20.0% |
| !! | TCAATCATTTCAAATTTCTA+GGG | + | chr5.3:6440732-6440751 | MS.gene54612:intron | 20.0% |
| !! | TGTGTTGAATTAATTATTGT+AGG | + | chr5.3:6441054-6441073 | MS.gene54612:intron | 20.0% |
| !! | TTCAATCATTTCAAATTTCT+AGG | + | chr5.3:6440731-6440750 | MS.gene54612:intron | 20.0% |
| !!! | AATATAATGAAAGTATACCT+TGG | - | chr5.3:6441418-6441437 | None:intergenic | 20.0% |
| !!! | AATGAAATCATTGGATTTTT+TGG | + | chr5.3:6440978-6440997 | MS.gene54612:intron | 20.0% |
| !!! | ATTGGATTTTTTGGAATAAT+GGG | + | chr5.3:6440987-6441006 | MS.gene54612:intron | 20.0% |
| !!! | CCATTATTTTTTAAGATTAC+AGG | + | chr5.3:6442731-6442750 | MS.gene54612:intron | 20.0% |
| !!! | GCTAATTCTTTTTTCATTTT+TGG | + | chr5.3:6441784-6441803 | MS.gene54612:intron | 20.0% |
| !!! | TAAGCTAGTTTTGATTATTA+GGG | + | chr5.3:6440935-6440954 | MS.gene54612:intron | 20.0% |
| !!! | TTAAGCTAGTTTTGATTATT+AGG | + | chr5.3:6440934-6440953 | MS.gene54612:intron | 20.0% |
| !!! | TTTCATTTTTGGTTATCAAA+AGG | + | chr5.3:6441795-6441814 | MS.gene54612:intron | 20.0% |
| ! | AAGATTACAGGATACTATTA+TGG | + | chr5.3:6442743-6442762 | MS.gene54612:intron | 25.0% |
| ! | AAGTGAAAGAGAAATCTAAA+AGG | - | chr5.3:6442396-6442415 | None:intergenic | 25.0% |
| ! | AGATTACAGGATACTATTAT+GGG | + | chr5.3:6442744-6442763 | MS.gene54612:intron | 25.0% |
| ! | ATTCAATTCTCTTAATTCGT+CGG | + | chr5.3:6440782-6440801 | MS.gene54612:intron | 25.0% |
| ! | GTCAATACAATAGTTATAAG+AGG | - | chr5.3:6442440-6442459 | None:intergenic | 25.0% |
| ! | TAATGCTATAAGGTTGTTTA+CGG | + | chr5.3:6442171-6442190 | MS.gene54612:intron | 25.0% |
| ! | TATACCTTATCTTCATCAAA+GGG | + | chr5.3:6441830-6441849 | MS.gene54612:intron | 25.0% |
| ! | TATTTGCAGTTGAATAATTC+AGG | + | chr5.3:6442471-6442490 | MS.gene54612:intron | 25.0% |
| ! | TTATACCTTATCTTCATCAA+AGG | + | chr5.3:6441829-6441848 | MS.gene54612:intron | 25.0% |
| !! | CTTATAACTATTGTATTGAC+TGG | + | chr5.3:6442440-6442459 | MS.gene54612:intron | 25.0% |
| !! | TACATTTGCAGTTGTATTTT+GGG | + | chr5.3:6442205-6442224 | MS.gene54612:intron | 25.0% |
| !! | TTTATGACCGGAATAATTTT+TGG | + | chr5.3:6440866-6440885 | MS.gene54612:intron | 25.0% |
| !! | TTTTTCCTTCATGAATTAGA+AGG | + | chr5.3:6442769-6442788 | MS.gene54612:intron | 25.0% |
| !!! | CATTGGATTTTTTGGAATAA+TGG | + | chr5.3:6440986-6441005 | MS.gene54612:intron | 25.0% |
| !!! | CTAAATTGCTAATTGTTTTG+TGG | + | chr5.3:6441562-6441581 | MS.gene54612:intron | 25.0% |
| !!! | GTTTTTAGTTTTCCTTGTTT+TGG | + | chr5.3:6441726-6441745 | MS.gene54612:intron | 25.0% |
| AAGAACCAAAAGCTACAAAA+AGG | - | chr5.3:6441238-6441257 | None:intergenic | 30.0% | |
| AAGAGTCAAACAAGTTTGAT+TGG | - | chr5.3:6442551-6442570 | None:intergenic | 30.0% | |
| AAGGAAAACTAAAAACCAAG+GGG | - | chr5.3:6441722-6441741 | None:intergenic | 30.0% | |
| ACAAGGAAAACTAAAAACCA+AGG | - | chr5.3:6441724-6441743 | None:intergenic | 30.0% | |
| ACCAAAATAGAACATTCTAG+CGG | - | chr5.3:6441658-6441677 | None:intergenic | 30.0% | |
| ACCAGAGTTAAATTTATGAC+CGG | + | chr5.3:6440854-6440873 | MS.gene54612:intron | 30.0% | |
| ATACCTTATCTTCATCAAAG+GGG | + | chr5.3:6441831-6441850 | MS.gene54612:intron | 30.0% | |
| CAAAATACAACTGCAAATGT+AGG | - | chr5.3:6442206-6442225 | None:intergenic | 30.0% | |
| CAAGGAAAACTAAAAACCAA+GGG | - | chr5.3:6441723-6441742 | None:intergenic | 30.0% | |
| GAAAGAGAAATCTAAAAGGA+TGG | - | chr5.3:6442392-6442411 | None:intergenic | 30.0% | |
| GAATTCCTTCTAATTCATGA+AGG | - | chr5.3:6442777-6442796 | None:intergenic | 30.0% | |
| GATTACAGGATACTATTATG+GGG | + | chr5.3:6442745-6442764 | MS.gene54612:intron | 30.0% | |
| TACTATCATCCAAAGATTAC+AGG | - | chr5.3:6442576-6442595 | None:intergenic | 30.0% | |
| TATTGGACCCTTGATTAATT+CGG | + | chr5.3:6441378-6441397 | MS.gene54612:CDS | 30.0% | |
| TGAATAGCCGAATTAATCAA+GGG | - | chr5.3:6441388-6441407 | None:intergenic | 30.0% | |
| TTACAATGATGAGTAGAATC+CGG | - | chr5.3:6442356-6442375 | None:intergenic | 30.0% | |
| TTGAATAGCCGAATTAATCA+AGG | - | chr5.3:6441389-6441408 | None:intergenic | 30.0% | |
| ! | ATTTGGTTGCAATTTTTGTC+CGG | + | chr5.3:6442334-6442353 | MS.gene54612:CDS | 30.0% |
| ! | CTACATTTGCAGTTGTATTT+TGG | + | chr5.3:6442204-6442223 | MS.gene54612:intron | 30.0% |
| ! | TCATTATATTTGTGGTTTGC+TGG | + | chr5.3:6441428-6441447 | MS.gene54612:intron | 30.0% |
| !! | TTCTTGAGTTCTTACTTTTG+TGG | + | chr5.3:6442124-6442143 | MS.gene54612:intron | 30.0% |
| AAAGTGCAACCACATAAGAA+TGG | - | chr5.3:6442050-6442069 | None:intergenic | 35.0% | |
| AAATGAACTGAAGATGATGC+TGG | - | chr5.3:6441927-6441946 | None:intergenic | 35.0% | |
| AGCGTGACCAAAAATTATTC+CGG | - | chr5.3:6440876-6440895 | None:intergenic | 35.0% | |
| AGTTGAATAATTCAGGCAAG+AGG | + | chr5.3:6442478-6442497 | MS.gene54612:intron | 35.0% | |
| CAAATCAGTAAACAAGGTCA+GGG | - | chr5.3:6442319-6442338 | None:intergenic | 35.0% | |
| GAAATCCATACCTCTTCAAA+AGG | - | chr5.3:6441211-6441230 | None:intergenic | 35.0% | |
| GTGGTCATTGAATCTCATAA+GGG | + | chr5.3:6441493-6441512 | MS.gene54612:intron | 35.0% | |
| GTTGAATAATTCAGGCAAGA+GGG | + | chr5.3:6442479-6442498 | MS.gene54612:intron | 35.0% | |
| TACCTTATCTTCATCAAAGG+GGG | + | chr5.3:6441832-6441851 | MS.gene54612:intron | 35.0% | |
| TCCGGTCATAAATTTAACTC+TGG | - | chr5.3:6440858-6440877 | None:intergenic | 35.0% | |
| TGCAACCAAATCAGTAAACA+AGG | - | chr5.3:6442325-6442344 | None:intergenic | 35.0% | |
| TGTCGCAAAGTTTGATTATG+TGG | + | chr5.3:6441474-6441493 | MS.gene54612:intron | 35.0% | |
| TGTGGTCATTGAATCTCATA+AGG | + | chr5.3:6441492-6441511 | MS.gene54612:intron | 35.0% | |
| ! | AAAGAGGTTGACTTTGTTGA+TGG | + | chr5.3:6441330-6441349 | MS.gene54612:CDS | 35.0% |
| ! | CTGTTCCTTTTTGTAGCTTT+TGG | + | chr5.3:6441230-6441249 | MS.gene54612:intron | 35.0% |
| ! | TCCGCTAGAATGTTCTATTT+TGG | + | chr5.3:6441654-6441673 | MS.gene54612:intron | 35.0% |
| !! | AGAGTATTGAAATTCCATCG+AGG | - | chr5.3:6440633-6440652 | None:intergenic | 35.0% |
| !!! | CTTAATTCGTCGGTTTTCTA+GGG | + | chr5.3:6440792-6440811 | MS.gene54612:intron | 35.0% |
| !!! | GTAGCTTTTGGTTCTTTTCA+TGG | + | chr5.3:6441242-6441261 | MS.gene54612:intron | 35.0% |
| !!! | TCTTAATTCGTCGGTTTTCT+AGG | + | chr5.3:6440791-6440810 | MS.gene54612:intron | 35.0% |
| !!! | TTTTAGGGTGTGAAAAGAGA+GGG | - | chr5.3:6441759-6441778 | None:intergenic | 35.0% |
| !!! | TTTTTAGGGTGTGAAAAGAG+AGG | - | chr5.3:6441760-6441779 | None:intergenic | 35.0% |
| AAACATGACTAACTGCACAG+TGG | - | chr5.3:6442650-6442669 | None:intergenic | 40.0% | |
| AACATGACTAACTGCACAGT+GGG | - | chr5.3:6442649-6442668 | None:intergenic | 40.0% | |
| AATGGCTCTCGTTAAGTTTG+AGG | + | chr5.3:6442093-6442112 | MS.gene54612:CDS | 40.0% | |
| ATCCATACCTCTTCAAAAGG+AGG | - | chr5.3:6441208-6441227 | None:intergenic | 40.0% | |
| ATCTTCATCAAAGGGGGAAA+AGG | + | chr5.3:6441838-6441857 | MS.gene54612:intron | 40.0% | |
| CACGCAAGAAATAGTTGAGA+AGG | + | chr5.3:6442260-6442279 | MS.gene54612:CDS | 40.0% | |
| CCAAATCAGTAAACAAGGTC+AGG | - | chr5.3:6442320-6442339 | None:intergenic | 40.0% | |
| CGTTCAGAATCATCTCAAAC+AGG | + | chr5.3:6440680-6440699 | MS.gene54612:CDS | 40.0% | |
| GAATACCACCAATGTTGAGA+AGG | - | chr5.3:6441138-6441157 | None:intergenic | 40.0% | |
| GACTCTTCTCCTGTAATCTT+TGG | + | chr5.3:6442564-6442583 | MS.gene54612:intron | 40.0% | |
| TGAAGATGATGCTGGAACAA+TGG | - | chr5.3:6441919-6441938 | None:intergenic | 40.0% | |
| TTCCCCCTTTGATGAAGATA+AGG | - | chr5.3:6441837-6441856 | None:intergenic | 40.0% | |
| TTTATGGTATGCAGCGAAAG+AGG | + | chr5.3:6441314-6441333 | MS.gene54612:intron | 40.0% | |
| ! | ATAGTTGAGAAGGCACACTT+TGG | + | chr5.3:6442270-6442289 | MS.gene54612:CDS | 40.0% |
| ! | ATGTTTCAGGGTGCTTCTAT+TGG | + | chr5.3:6441361-6441380 | MS.gene54612:CDS | 40.0% |
| ! | CCTGACCTTGTTTACTGATT+TGG | + | chr5.3:6442317-6442336 | MS.gene54612:CDS | 40.0% |
| ! | GTTTGAGATGATTCTGAACG+CGG | - | chr5.3:6440680-6440699 | None:intergenic | 40.0% |
| ! | TTTGAGATGATTCTGAACGC+GGG | - | chr5.3:6440679-6440698 | None:intergenic | 40.0% |
| !! | GCAGTTGTATTTTGGGCTTT+TGG | + | chr5.3:6442212-6442231 | MS.gene54612:intron | 40.0% |
| !!! | TTTGGGCTTTTGGTGTTTGT+GGG | + | chr5.3:6442222-6442241 | MS.gene54612:CDS | 40.0% |
| !!! | TTTTGGGCTTTTGGTGTTTG+TGG | + | chr5.3:6442221-6442240 | MS.gene54612:CDS | 40.0% |
| AATTCCCACACACGCAATTG+TGG | - | chr5.3:6441164-6441183 | None:intergenic | 45.0% | |
| AGCCATTGAACCTCCAAAGA+TGG | - | chr5.3:6442080-6442099 | None:intergenic | 45.0% | |
| CAATGTTGAGAAGGACATGG+AGG | - | chr5.3:6441129-6441148 | None:intergenic | 45.0% | |
| CACCAATGTTGAGAAGGACA+TGG | - | chr5.3:6441132-6441151 | None:intergenic | 45.0% | |
| CACTTTGCTTCTGCCATCTT+TGG | + | chr5.3:6442064-6442083 | MS.gene54612:CDS | 45.0% | |
| CATGTCCTTCTCAACATTGG+TGG | + | chr5.3:6441130-6441149 | MS.gene54612:CDS | 45.0% | |
| CGTGTGTGGGAATTAGTGTT+TGG | + | chr5.3:6441170-6441189 | MS.gene54612:CDS | 45.0% | |
| CTCCATGTCCTTCTCAACAT+TGG | + | chr5.3:6441127-6441146 | MS.gene54612:CDS | 45.0% | |
| CTGGGTTGTCCATTCTTATG+TGG | + | chr5.3:6442038-6442057 | MS.gene54612:CDS | 45.0% | |
| CTTACCACAATTGCGTGTGT+GGG | + | chr5.3:6441157-6441176 | MS.gene54612:CDS | 45.0% | |
| GAATAATTCAGGCAAGAGGG+CGG | + | chr5.3:6442482-6442501 | MS.gene54612:intron | 45.0% | |
| GCGGATGGCTTAGCTAATAT+CGG | + | chr5.3:6441615-6441634 | MS.gene54612:intron | 45.0% | |
| GTGGGAACAAGTTCAAGACA+TGG | - | chr5.3:6442631-6442650 | None:intergenic | 45.0% | |
| TCATCAAAGGGGGAAAAGGT+GGG | + | chr5.3:6441842-6441861 | MS.gene54612:intron | 45.0% | |
| TCTTACCACAATTGCGTGTG+TGG | + | chr5.3:6441156-6441175 | MS.gene54612:CDS | 45.0% | |
| TCTTCGATTCAACACCTCGA+TGG | + | chr5.3:6440616-6440635 | MS.gene54612:CDS | 45.0% | |
| TTCATCAAAGGGGGAAAAGG+TGG | + | chr5.3:6441841-6441860 | MS.gene54612:intron | 45.0% | |
| TTCATTTGTCGCAACTGCCT+TGG | + | chr5.3:6441940-6441959 | MS.gene54612:CDS | 45.0% | |
| TTGAGATGATTCTGAACGCG+GGG | - | chr5.3:6440678-6440697 | None:intergenic | 45.0% | |
| TTTGACCTTGTGTTTCGCTG+TGG | + | chr5.3:6441081-6441100 | MS.gene54612:CDS | 45.0% | |
| TTTGCTTCTGCCATCTTTGG+AGG | + | chr5.3:6442067-6442086 | MS.gene54612:CDS | 45.0% | |
| TTTGTGTGAAGCCAACCAAG+TGG | + | chr5.3:6441593-6441612 | MS.gene54612:intron | 45.0% | |
| ! | TGCCATCTTTGGAGGTTCAA+TGG | + | chr5.3:6442075-6442094 | MS.gene54612:CDS | 45.0% |
| !! | CACCTCCTTTTGAAGAGGTA+TGG | + | chr5.3:6441203-6441222 | MS.gene54612:intron | 45.0% |
| !! | CTCAACACCTCCTTTTGAAG+AGG | + | chr5.3:6441198-6441217 | MS.gene54612:CDS | 45.0% |
| !! | TTGGTGGCTTGGTTTCTTCT+GGG | + | chr5.3:6442020-6442039 | MS.gene54612:CDS | 45.0% |
| !! | TTGTGGTTTGCTGGTGCATT+GGG | + | chr5.3:6441437-6441456 | MS.gene54612:intron | 45.0% |
| !! | TTTGTGGTTTGCTGGTGCAT+TGG | + | chr5.3:6441436-6441455 | MS.gene54612:intron | 45.0% |
| !!! | ATATATCTTTTTTTTTTTTT+TGG | - | chr5.3:6440904-6440923 | None:intergenic | 5.0% |
| AAACCAAGCCACCAAGGTAG+AGG | - | chr5.3:6442015-6442034 | None:intergenic | 50.0% | |
| CAGAAGAAACCAAGCCACCA+AGG | - | chr5.3:6442021-6442040 | None:intergenic | 50.0% | |
| CATCAAAGGGGGAAAAGGTG+GGG | + | chr5.3:6441843-6441862 | MS.gene54612:intron | 50.0% | |
| CGGCTATTCAAGTCGATCCA+AGG | + | chr5.3:6441398-6441417 | MS.gene54612:CDS | 50.0% | |
| GAGGGCTAAACGCCAAAACA+AGG | - | chr5.3:6441741-6441760 | None:intergenic | 50.0% | |
| TCAGCTGTTCAGTTTCCCCT+TGG | + | chr5.3:6441704-6441723 | MS.gene54612:intron | 50.0% | |
| ! | AGCTTTGGTTGCTAAGCGCA+GGG | + | chr5.3:6441985-6442004 | MS.gene54612:CDS | 50.0% |
| ! | CTTGGCTTTCGGGTGTTTCT+CGG | + | chr5.3:6441958-6441977 | MS.gene54612:CDS | 50.0% |
| ! | TTGGCTTTCGGGTGTTTCTC+GGG | + | chr5.3:6441959-6441978 | MS.gene54612:CDS | 50.0% |
| !! | CTTGGTGGCTTGGTTTCTTC+TGG | + | chr5.3:6442019-6442038 | MS.gene54612:CDS | 50.0% |
| !! | GTTGACTTTGTTGATGGCCG+CGG | + | chr5.3:6441336-6441355 | MS.gene54612:CDS | 50.0% |
| !! | TGTGGTTTGCTGGTGCATTG+GGG | + | chr5.3:6441438-6441457 | MS.gene54612:intron | 50.0% |
| AGCACCCTGAAACATTGCCG+CGG | - | chr5.3:6441356-6441375 | None:intergenic | 55.0% | |
| AGCCACCACAGCGAAACACA+AGG | - | chr5.3:6441089-6441108 | None:intergenic | 55.0% | |
| ATGGCCGCGGCAATGTTTCA+GGG | + | chr5.3:6441349-6441368 | MS.gene54612:CDS | 55.0% | |
| CGAGAAACACCCGAAAGCCA+AGG | - | chr5.3:6441960-6441979 | None:intergenic | 55.0% | |
| GACCTTGTGTTTCGCTGTGG+TGG | + | chr5.3:6441084-6441103 | MS.gene54612:CDS | 55.0% | |
| GTGTGAAGCCAACCAAGTGG+CGG | + | chr5.3:6441596-6441615 | MS.gene54612:intron | 55.0% | |
| GTGTTTCTCGGGAGCAGCTT+TGG | + | chr5.3:6441970-6441989 | MS.gene54612:CDS | 55.0% | |
| TAAGCCATCCGCCACTTGGT+TGG | - | chr5.3:6441607-6441626 | None:intergenic | 55.0% | |
| TAATTCAGGCAAGAGGGCGG+AGG | + | chr5.3:6442485-6442504 | MS.gene54612:intron | 55.0% | |
| TAGCTAAGCCATCCGCCACT+TGG | - | chr5.3:6441611-6441630 | None:intergenic | 55.0% | |
| TGCTGGTGCATTGGGGTCTT+TGG | + | chr5.3:6441445-6441464 | MS.gene54612:intron | 55.0% | |
| ! | AGGGGGAAAAGGTGGGGTTT+TGG | + | chr5.3:6441849-6441868 | MS.gene54612:intron | 55.0% |
| ! | CAGCTTTGGTTGCTAAGCGC+AGG | + | chr5.3:6441984-6442003 | MS.gene54612:CDS | 55.0% |
| ! | GTACCTCTACCTTGGTGGCT+TGG | + | chr5.3:6442009-6442028 | MS.gene54612:CDS | 55.0% |
| ! | GTCGCAACTGCCTTGGCTTT+CGG | + | chr5.3:6441947-6441966 | MS.gene54612:CDS | 55.0% |
| ! | TCGCAACTGCCTTGGCTTTC+GGG | + | chr5.3:6441948-6441967 | MS.gene54612:CDS | 55.0% |
| !! | AGGGAGTACCTCTACCTTGG+TGG | + | chr5.3:6442004-6442023 | MS.gene54612:CDS | 55.0% |
| GATGGCCGCGGCAATGTTTC+AGG | + | chr5.3:6441348-6441367 | MS.gene54612:CDS | 60.0% | |
| GCTGTGGTGGCTGCTTCTGT+TGG | + | chr5.3:6441097-6441116 | MS.gene54612:CDS | 60.0% | |
| ! | GAAGCCAACCAAGTGGCGGA+TGG | + | chr5.3:6441600-6441619 | MS.gene54612:intron | 60.0% |
| !! | CGCAGGGAGTACCTCTACCT+TGG | + | chr5.3:6442001-6442020 | MS.gene54612:CDS | 60.0% |
| TTCAGGCAAGAGGGCGGAGG+AGG | + | chr5.3:6442488-6442507 | MS.gene54612:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6440597 | 6442802 | 6440597 | ID=MS.gene54612 |
| chr5.3 | mRNA | 6440597 | 6442802 | 6440597 | ID=MS.gene54612.t1;Parent=MS.gene54612 |
| chr5.3 | exon | 6440597 | 6440701 | 6440597 | ID=MS.gene54612.t1.exon1;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6440597 | 6440701 | 6440597 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| chr5.3 | exon | 6441076 | 6441219 | 6441076 | ID=MS.gene54612.t1.exon2;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6441076 | 6441219 | 6441076 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| chr5.3 | exon | 6441328 | 6441419 | 6441328 | ID=MS.gene54612.t1.exon3;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6441328 | 6441419 | 6441328 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| chr5.3 | exon | 6441928 | 6442114 | 6441928 | ID=MS.gene54612.t1.exon4;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6441928 | 6442114 | 6441928 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| chr5.3 | exon | 6442216 | 6442371 | 6442216 | ID=MS.gene54612.t1.exon5;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6442216 | 6442371 | 6442216 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| chr5.3 | exon | 6442788 | 6442802 | 6442788 | ID=MS.gene54612.t1.exon6;Parent=MS.gene54612.t1 |
| chr5.3 | CDS | 6442788 | 6442802 | 6442788 | ID=cds.MS.gene54612.t1;Parent=MS.gene54612.t1 |
| Gene Sequence |
| Protein sequence |
