Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54679.t1 | XP_024641189.1 | 95.4 | 306 | 14 | 0 | 1 | 306 | 1 | 306 | 1.10E-142 | 516.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54679.t1 | P9WLH5 | 44.1 | 127 | 70 | 1 | 179 | 304 | 5 | 131 | 4.9e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54679.t1 | A0A396H9H0 | 95.4 | 306 | 14 | 0 | 1 | 306 | 1 | 306 | 7.8e-143 | 516.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene54679 | 0.812484 | 4.14E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene54679 | 0.828401 | 9.18E-55 | -1.69E-46 |
| MS.gene050630 | MS.gene54679 | 0.808728 | 2.69E-50 | -1.69E-46 |
| MS.gene051248 | MS.gene54679 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene052731 | MS.gene54679 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene54679 | 0.840004 | 1.13E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene54679 | 0.812542 | 4.02E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene54679 | 0.813235 | 2.84E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene54679 | 0.820005 | 8.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54679.t1 | AT3G01410 | 46.732 | 306 | 135 | 3 | 1 | 305 | 5 | 283 | 6.82e-90 | 270 |
| MS.gene54679.t1 | AT3G01410 | 46.732 | 306 | 135 | 3 | 1 | 305 | 5 | 283 | 6.82e-90 | 270 |
| MS.gene54679.t1 | AT1G24090 | 45.033 | 302 | 130 | 5 | 4 | 305 | 80 | 345 | 4.48e-76 | 237 |
| MS.gene54679.t1 | AT5G51080 | 40.397 | 302 | 116 | 4 | 4 | 305 | 14 | 251 | 2.99e-65 | 206 |
| MS.gene54679.t1 | AT5G51080 | 40.397 | 302 | 116 | 4 | 4 | 305 | 77 | 314 | 1.64e-64 | 206 |
| MS.gene54679.t1 | AT5G51080 | 40.397 | 302 | 116 | 4 | 4 | 305 | 77 | 314 | 1.64e-64 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATCAATCATGTTCTT+AGG | 0.166676 | 6.1:+3677031 | MS.gene54679:CDS |
| ACTTGCTGTTTGTCCTTATC+AGG | 0.263702 | 6.1:+3674479 | MS.gene54679:CDS |
| TGTAACAGATTCAGGGTATA+TGG | 0.267805 | 6.1:+3676938 | MS.gene54679:intron |
| TTTCAGGATCCATGTTCTTC+AGG | 0.275363 | 6.1:+3675124 | MS.gene54679:intron |
| GTTCTTCCTCCGTAAGAATA+TGG | 0.275553 | 6.1:-3675420 | None:intergenic |
| TCTTGTAGACTTGAGTTTGA+TGG | 0.289086 | 6.1:+3676309 | MS.gene54679:CDS |
| GTAAAGAAAGGGAATGTTAT+TGG | 0.292028 | 6.1:+3673075 | MS.gene54679:CDS |
| CATGTAAATGCGGGTAGTTT+TGG | 0.319436 | 6.1:+3674453 | MS.gene54679:CDS |
| TCTTGTCTCACATGGACTTA+AGG | 0.366869 | 6.1:+3674404 | MS.gene54679:CDS |
| CTTGTCTCACATGGACTTAA+GGG | 0.382399 | 6.1:+3674405 | MS.gene54679:CDS |
| TCCTCATCGAAGAGCTTTCA+AGG | 0.382842 | 6.1:+3675456 | MS.gene54679:CDS |
| CTCCCTGCTCGTGTGCAATC+AGG | 0.397804 | 6.1:+3676610 | MS.gene54679:CDS |
| AATCCTGGACCAGCTGGTGC+TGG | 0.416599 | 6.1:+3676345 | MS.gene54679:CDS |
| TTACGGAGGAAGAACTAATA+TGG | 0.417311 | 6.1:+3675428 | MS.gene54679:CDS |
| TTTCAGGATCCATATTCTTA+CGG | 0.432472 | 6.1:+3675411 | MS.gene54679:intron |
| GCTTTCTATGTTGTAAAGAA+AGG | 0.433125 | 6.1:+3673063 | MS.gene54679:CDS |
| CAAGATCAATCATGTTCTTA+GGG | 0.442306 | 6.1:+3677032 | MS.gene54679:CDS |
| AAACTTATTCATCAACTCCT+TGG | 0.471646 | 6.1:-3677001 | None:intergenic |
| TTGCAAAGGAATCATGCTAT+AGG | 0.473661 | 6.1:+3675648 | MS.gene54679:CDS |
| AAAGTGTCTCAAACCTGATA+AGG | 0.474134 | 6.1:-3674492 | None:intergenic |
| AAACCTGATTGCACACGAGC+AGG | 0.475014 | 6.1:-3676613 | None:intergenic |
| TTCAGGAGGAGGAACTGTTA+TGG | 0.477459 | 6.1:+3675141 | MS.gene54679:CDS |
| CTTTCTATGTTGTAAAGAAA+GGG | 0.478602 | 6.1:+3673064 | MS.gene54679:CDS |
| GCTATACTGCGTGCTGAAGA+TGG | 0.482375 | 6.1:+3676369 | MS.gene54679:CDS |
| TATAAGCACATCCGTGTTCA+AGG | 0.496396 | 6.1:+3676584 | MS.gene54679:CDS |
| CTATACTGCGTGCTGAAGAT+GGG | 0.507342 | 6.1:+3676370 | MS.gene54679:CDS |
| TATCGTTTGCGTGAAGGAGT+TGG | 0.512108 | 6.1:+3676491 | MS.gene54679:CDS |
| GGTGCGTGCAAAGGGAATCC+TGG | 0.517135 | 6.1:+3676330 | MS.gene54679:CDS |
| GCTCCAGCACCAGCTGGTCC+AGG | 0.521445 | 6.1:-3676348 | None:intergenic |
| AAAGGGAATCCTGGACCAGC+TGG | 0.523320 | 6.1:+3676339 | MS.gene54679:CDS |
| ATCTTGCGATCTCTTTAATG+AGG | 0.527010 | 6.1:-3675170 | None:intergenic |
| AGCAGCACTGATAGAGTAAG+TGG | 0.536190 | 6.1:-3674430 | None:intergenic |
| TAGGTCTATCGTTTGCGTGA+AGG | 0.538230 | 6.1:+3676485 | MS.gene54679:intron |
| CAGGATCCATGTTCTTCAGG+AGG | 0.547487 | 6.1:+3675127 | MS.gene54679:intron |
| AACCTGATTGCACACGAGCA+GGG | 0.549085 | 6.1:-3676612 | None:intergenic |
| GAGTTTGATGGTGCGTGCAA+AGG | 0.553758 | 6.1:+3676321 | MS.gene54679:CDS |
| AGTTTGATGGTGCGTGCAAA+GGG | 0.555043 | 6.1:+3676322 | MS.gene54679:CDS |
| CAAAGGAATCATGCTATAGG+TGG | 0.561135 | 6.1:+3675651 | MS.gene54679:CDS |
| AAAGTCTTGAAATCTAACCT+TGG | 0.564854 | 6.1:-3677375 | None:intergenic |
| AGTATAGCTCCAGCACCAGC+TGG | 0.573265 | 6.1:-3676354 | None:intergenic |
| TTCTTTACCTCAAGAAACTG+AGG | 0.573541 | 6.1:+3674377 | MS.gene54679:CDS |
| CATACAGAAGATGAAAGTAA+AGG | 0.576695 | 6.1:-3673126 | None:intergenic |
| GATCCATGTTCTTCAGGAGG+AGG | 0.580570 | 6.1:+3675130 | MS.gene54679:CDS |
| AGATACTCCTCAGTTTCTTG+AGG | 0.586973 | 6.1:-3674384 | None:intergenic |
| AGTGCTGCTCATGTAAATGC+GGG | 0.591618 | 6.1:+3674444 | MS.gene54679:CDS |
| CGAATTATGCAATGAAGCCA+AGG | 0.597835 | 6.1:+3676984 | MS.gene54679:CDS |
| CAGTGCTGCTCATGTAAATG+CGG | 0.597847 | 6.1:+3674443 | MS.gene54679:CDS |
| GTTCCTCCTCCTGAAGAACA+TGG | 0.608819 | 6.1:-3675133 | None:intergenic |
| AATAATGTTGCTGAATATCG+AGG | 0.614886 | 6.1:+3676524 | MS.gene54679:CDS |
| CAGGATCCATATTCTTACGG+AGG | 0.616635 | 6.1:+3675414 | MS.gene54679:intron |
| AACCTTGGAGATTTAACGCG+CGG | 0.635100 | 6.1:-3677360 | None:intergenic |
| ACCTTGAAAGCTCTTCGATG+AGG | 0.648075 | 6.1:-3675457 | None:intergenic |
| CACACTAGCATCAAGTTGTG+TGG | 0.660919 | 6.1:-3675481 | None:intergenic |
| GAGGAGTATCTTGTCTCACA+TGG | 0.666064 | 6.1:+3674396 | MS.gene54679:CDS |
| AACCGCGCGTTAAATCTCCA+AGG | 0.673817 | 6.1:+3677358 | MS.gene54679:CDS |
| GCAGGGAGTCTCCTTGAACA+CGG | 0.676489 | 6.1:-3676595 | None:intergenic |
| GCGTGCTGAAGATGGGAGCA+AGG | 0.698100 | 6.1:+3676377 | MS.gene54679:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATTATTCATATAATT+AGG | - | chr6.1:3677197-3677216 | None:intergenic | 10.0% |
| !! | TAATCTATTCTTATATTATA+TGG | + | chr6.1:3675363-3675382 | MS.gene54679:intron | 10.0% |
| !!! | TTATTTTTTTTTAATGTTCA+AGG | + | chr6.1:3677306-3677325 | MS.gene54679:intron | 10.0% |
| !!! | ATTTTGTAAAATATCTATCT+AGG | - | chr6.1:3676241-3676260 | None:intergenic | 15.0% |
| !! | AAATGGAGTTCATTTATAAA+GGG | + | chr6.1:3673884-3673903 | MS.gene54679:intron | 20.0% |
| !! | AATACAATCCAACATAATAA+GGG | - | chr6.1:3674986-3675005 | None:intergenic | 20.0% |
| !! | AGATTAATCACTATAATGAT+GGG | - | chr6.1:3675349-3675368 | None:intergenic | 20.0% |
| !! | ATCAGATATAATGATAGTTA+TGG | - | chr6.1:3675023-3675042 | None:intergenic | 20.0% |
| !! | GCTTTAATCTAAAAACAAAA+AGG | - | chr6.1:3677234-3677253 | None:intergenic | 20.0% |
| !! | TAAATGGAGTTCATTTATAA+AGG | + | chr6.1:3673883-3673902 | MS.gene54679:intron | 20.0% |
| !! | TAGATTAATCACTATAATGA+TGG | - | chr6.1:3675350-3675369 | None:intergenic | 20.0% |
| !! | TTATTCAAACATGATCTATA+TGG | + | chr6.1:3673766-3673785 | MS.gene54679:intron | 20.0% |
| !! | TTTATGATTATATTAGTGGA+TGG | - | chr6.1:3673933-3673952 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTCATAAGCTAA+AGG | - | chr6.1:3674016-3674035 | None:intergenic | 20.0% |
| !!! | CATTTCTTATTACCATTTTA+TGG | + | chr6.1:3675923-3675942 | MS.gene54679:intron | 20.0% |
| !!! | GGATTTTTTTTCTGTATTTA+GGG | + | chr6.1:3673265-3673284 | MS.gene54679:intron | 20.0% |
| !!! | TAAGAGATTAATTTTCTTTC+AGG | + | chr6.1:3675395-3675414 | MS.gene54679:intron | 20.0% |
| !!! | TGGATTTTTTTTCTGTATTT+AGG | + | chr6.1:3673264-3673283 | MS.gene54679:intron | 20.0% |
| !!! | TTATGATTATATTAGTGGAT+GGG | - | chr6.1:3673932-3673951 | None:intergenic | 20.0% |
| !!! | TTGGATTTTTTCTGTATTTT+GGG | + | chr6.1:3673833-3673852 | MS.gene54679:intron | 20.0% |
| !!! | TTGTTTTTCTTTCATTTGAT+TGG | + | chr6.1:3675795-3675814 | MS.gene54679:intron | 20.0% |
| !!! | TTTGGATTTTTTCTGTATTT+TGG | + | chr6.1:3673832-3673851 | MS.gene54679:intron | 20.0% |
| !!! | TTTTCTTTTGTCTTACTATT+TGG | + | chr6.1:3677262-3677281 | MS.gene54679:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr6.1:3673292-3673311 | None:intergenic | 25.0% |
| ! | AAAACAATAGAGAGAGAAAA+AGG | + | chr6.1:3675821-3675840 | MS.gene54679:intron | 25.0% |
| ! | AAAATTGTATCTTCATAAGC+TGG | + | chr6.1:3673364-3673383 | MS.gene54679:intron | 25.0% |
| ! | AAAGACAAAAACTTTGCATA+AGG | - | chr6.1:3673155-3673174 | None:intergenic | 25.0% |
| ! | AAAGTAAAAAACGCGAATAT+GGG | + | chr6.1:3676961-3676980 | MS.gene54679:CDS | 25.0% |
| ! | AATGTAAAGGTAATAATTCC+TGG | - | chr6.1:3675245-3675264 | None:intergenic | 25.0% |
| ! | ACAAAAGCAAACAAAAATGA+TGG | - | chr6.1:3676921-3676940 | None:intergenic | 25.0% |
| ! | ACACCATAAGTTCAATATAA+AGG | - | chr6.1:3674215-3674234 | None:intergenic | 25.0% |
| ! | ACATACATACTTTAAATGAC+AGG | - | chr6.1:3676009-3676028 | None:intergenic | 25.0% |
| ! | AGAAAAAAAATCCATAAGCT+GGG | - | chr6.1:3673258-3673277 | None:intergenic | 25.0% |
| ! | AGTAAGACAAAAGAAAAAAG+AGG | - | chr6.1:3677259-3677278 | None:intergenic | 25.0% |
| ! | AGTGAAATATAGACCAATAT+AGG | - | chr6.1:3676850-3676869 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTTATCCAAAC+TGG | + | chr6.1:3674176-3674195 | MS.gene54679:intron | 25.0% |
| ! | CAATACAATCCAACATAATA+AGG | - | chr6.1:3674987-3675006 | None:intergenic | 25.0% |
| ! | CATTATTCATAAGTTTGTCA+AGG | - | chr6.1:3673406-3673425 | None:intergenic | 25.0% |
| ! | CTATTTCATCCAATGATTAT+CGG | - | chr6.1:3674605-3674624 | None:intergenic | 25.0% |
| ! | CTTTCTATGTTGTAAAGAAA+GGG | + | chr6.1:3673064-3673083 | MS.gene54679:CDS | 25.0% |
| ! | GTCAAAAAGTTGTTAGAAAA+TGG | + | chr6.1:3675888-3675907 | MS.gene54679:intron | 25.0% |
| ! | GTCTAACATTTAAGAGAAAA+GGG | - | chr6.1:3677111-3677130 | None:intergenic | 25.0% |
| ! | GTGGTTTATGATTATATTAG+TGG | - | chr6.1:3673937-3673956 | None:intergenic | 25.0% |
| ! | GTTCAAATTCTGTTATTCTA+TGG | + | chr6.1:3674923-3674942 | MS.gene54679:intron | 25.0% |
| ! | TATAAATGAACTCCATTTAG+TGG | - | chr6.1:3673882-3673901 | None:intergenic | 25.0% |
| ! | TGCATACAAATGAAGAAAAT+CGG | - | chr6.1:3676116-3676135 | None:intergenic | 25.0% |
| ! | TTAAATGTTAGACGTTACAT+TGG | + | chr6.1:3677118-3677137 | MS.gene54679:intron | 25.0% |
| ! | TTATATTGAACTTATGGTGT+TGG | + | chr6.1:3674215-3674234 | MS.gene54679:intron | 25.0% |
| ! | TTTCCTCTTATATTGGATAA+AGG | + | chr6.1:3674555-3674574 | MS.gene54679:intron | 25.0% |
| !! | AGTCAAAATTGTTTTCATCA+AGG | - | chr6.1:3674051-3674070 | None:intergenic | 25.0% |
| !! | CATTTTCAACAAATTTGCAA+AGG | + | chr6.1:3675634-3675653 | MS.gene54679:CDS | 25.0% |
| !! | CGTAAATTTTCCTCTTATAT+TGG | + | chr6.1:3674548-3674567 | MS.gene54679:intron | 25.0% |
| !! | GAATATCGAGGATTAATTTT+AGG | + | chr6.1:3676536-3676555 | MS.gene54679:CDS | 25.0% |
| !! | GATTTCATCTCTTAAAGTTT+TGG | + | chr6.1:3676187-3676206 | MS.gene54679:intron | 25.0% |
| !! | TAATATTCGGTGAAAATTCA+TGG | - | chr6.1:3675533-3675552 | None:intergenic | 25.0% |
| !! | TATTACCATTTTATGGCTTT+CGG | + | chr6.1:3675930-3675949 | MS.gene54679:intron | 25.0% |
| !! | TGTCATTTAAAGTATGTATG+TGG | + | chr6.1:3676008-3676027 | MS.gene54679:intron | 25.0% |
| !! | TTATGCAAAGTTTTTGTCTT+TGG | + | chr6.1:3673154-3673173 | MS.gene54679:intron | 25.0% |
| !!! | AAGCTGTAAGTGTTTTTAAA+GGG | + | chr6.1:3674352-3674371 | MS.gene54679:CDS | 25.0% |
| !!! | CTTTGTTGTTTTGGTTAAAA+TGG | + | chr6.1:3674277-3674296 | MS.gene54679:intron | 25.0% |
| !!! | GTTTTGGTTAAAATGGAAAT+GGG | + | chr6.1:3674284-3674303 | MS.gene54679:intron | 25.0% |
| !!! | TGTTTTGGTTAAAATGGAAA+TGG | + | chr6.1:3674283-3674302 | MS.gene54679:intron | 25.0% |
| !!! | TTTGGAATTTTTCTGCATTT+GGG | + | chr6.1:3673172-3673191 | MS.gene54679:intron | 25.0% |
| !!! | TTTGGCATTTTTGAAGTATT+GGG | + | chr6.1:3675319-3675338 | MS.gene54679:intron | 25.0% |
| !!! | TTTTGGTTAAAATGGAAATG+GGG | + | chr6.1:3674285-3674304 | MS.gene54679:intron | 25.0% |
| !!! | TTTTTTTCATAAGCTAAAGG+CGG | - | chr6.1:3674013-3674032 | None:intergenic | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr6.1:3673291-3673310 | None:intergenic | 30.0% | |
| AAACTTATTCATCAACTCCT+TGG | - | chr6.1:3677004-3677023 | None:intergenic | 30.0% | |
| AACTTTAAATATCCTCAACC+AGG | + | chr6.1:3675224-3675243 | MS.gene54679:intron | 30.0% | |
| AAGAAAATCGGGCAATTAAT+AGG | - | chr6.1:3676104-3676123 | None:intergenic | 30.0% | |
| AAGACAAAAACTTAGCATGA+AGG | - | chr6.1:3673814-3673833 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr6.1:3673627-3673646 | None:intergenic | 30.0% | |
| AATAATGTTGCTGAATATCG+AGG | + | chr6.1:3676524-3676543 | MS.gene54679:CDS | 30.0% | |
| AATATAAAGGAGCTCCATTT+AGG | - | chr6.1:3674202-3674221 | None:intergenic | 30.0% | |
| ACTCTCTTCTGTACAAAAAA+AGG | - | chr6.1:3675603-3675622 | None:intergenic | 30.0% | |
| AGAAAATCGGGCAATTAATA+GGG | - | chr6.1:3676103-3676122 | None:intergenic | 30.0% | |
| ATTAACAATGCGAAACACAA+AGG | - | chr6.1:3675721-3675740 | None:intergenic | 30.0% | |
| CACAAATCATGCATAACTAA+GGG | - | chr6.1:3673498-3673517 | None:intergenic | 30.0% | |
| CAGAAAAAAAATCCATAAGC+TGG | - | chr6.1:3673259-3673278 | None:intergenic | 30.0% | |
| CATACAGAAGATGAAAGTAA+AGG | - | chr6.1:3673129-3673148 | None:intergenic | 30.0% | |
| CGATAATCATTGGATGAAAT+AGG | + | chr6.1:3674603-3674622 | MS.gene54679:intron | 30.0% | |
| CGTCTAACATTTAAGAGAAA+AGG | - | chr6.1:3677112-3677131 | None:intergenic | 30.0% | |
| CTTCAAAAATGCCAAAGTAT+CGG | - | chr6.1:3675315-3675334 | None:intergenic | 30.0% | |
| GAAAGTAAAAAACGCGAATA+TGG | + | chr6.1:3676960-3676979 | MS.gene54679:CDS | 30.0% | |
| GAAGAGATTAATGTTCTTTC+AGG | + | chr6.1:3675108-3675127 | MS.gene54679:intron | 30.0% | |
| GCATACAAATGAAGAAAATC+GGG | - | chr6.1:3676115-3676134 | None:intergenic | 30.0% | |
| GCTCCTTTATATTGAACTTA+TGG | + | chr6.1:3674209-3674228 | MS.gene54679:intron | 30.0% | |
| GCTTTCTATGTTGTAAAGAA+AGG | + | chr6.1:3673063-3673082 | MS.gene54679:CDS | 30.0% | |
| GTAAAGAAAGGGAATGTTAT+TGG | + | chr6.1:3673075-3673094 | MS.gene54679:CDS | 30.0% | |
| GTACAAATATCACTACTCAA+TGG | - | chr6.1:3675746-3675765 | None:intergenic | 30.0% | |
| GTGATATTTGTACAACTCTT+TGG | + | chr6.1:3675753-3675772 | MS.gene54679:intron | 30.0% | |
| TAGCTTATGAAAACAGCTTA+TGG | + | chr6.1:3673665-3673684 | MS.gene54679:intron | 30.0% | |
| TCACAAATCATGCATAACTA+AGG | - | chr6.1:3673499-3673518 | None:intergenic | 30.0% | |
| TTCAAACATGATCTATATGG+AGG | + | chr6.1:3673769-3673788 | MS.gene54679:intron | 30.0% | |
| TTGAAACAAGCTCTCAAAAA+TGG | + | chr6.1:3676560-3676579 | MS.gene54679:CDS | 30.0% | |
| TTGAATGTAACCACATGTAT+AGG | + | chr6.1:3674630-3674649 | MS.gene54679:intron | 30.0% | |
| TTTCAGGATCCATATTCTTA+CGG | + | chr6.1:3675411-3675430 | MS.gene54679:intron | 30.0% | |
| ! | AGCCTTTCTTTGGTAATATT+CGG | - | chr6.1:3675546-3675565 | None:intergenic | 30.0% |
| ! | ATTTTCCTCCCTTATTATGT+TGG | + | chr6.1:3674975-3674994 | MS.gene54679:intron | 30.0% |
| ! | TCATGCTAAGTTTTTGTCTT+TGG | + | chr6.1:3673814-3673833 | MS.gene54679:intron | 30.0% |
| !! | ATACGTCTTTGGTAATGTAA+AGG | - | chr6.1:3675258-3675277 | None:intergenic | 30.0% |
| !! | GAAGCTGTAAGTGTTTTTAA+AGG | + | chr6.1:3674351-3674370 | MS.gene54679:CDS | 30.0% |
| !! | TTAAAGTTGATAACTCACAC+TGG | - | chr6.1:3675212-3675231 | None:intergenic | 30.0% |
| !! | TTGCTTTTGTAACAGATTCA+GGG | + | chr6.1:3676931-3676950 | MS.gene54679:intron | 30.0% |
| !! | TTTGCTTTTGTAACAGATTC+AGG | + | chr6.1:3676930-3676949 | MS.gene54679:intron | 30.0% |
| !!! | CTTTGGAATTTTTCTGCATT+TGG | + | chr6.1:3673171-3673190 | MS.gene54679:intron | 30.0% |
| !!! | CTTTGGCATTTTTGAAGTAT+TGG | + | chr6.1:3675318-3675337 | MS.gene54679:intron | 30.0% |
| !!! | TTGGCATTTTTGAAGTATTG+GGG | + | chr6.1:3675320-3675339 | MS.gene54679:intron | 30.0% |
| !!! | TTTTTTGTACAGAAGAGAGT+TGG | + | chr6.1:3675603-3675622 | MS.gene54679:intron | 30.0% |
| AAGACGTATCAGACATGTAT+CGG | + | chr6.1:3675269-3675288 | MS.gene54679:intron | 35.0% | |
| AAGATCCGAAAGCCATAAAA+TGG | - | chr6.1:3675938-3675957 | None:intergenic | 35.0% | |
| AAGGTAATAATTCCTGGTTG+AGG | - | chr6.1:3675239-3675258 | None:intergenic | 35.0% | |
| ACAATCCAACATAATAAGGG+AGG | - | chr6.1:3674983-3675002 | None:intergenic | 35.0% | |
| ACCAATATAGGTATCAAGAG+AGG | - | chr6.1:3676838-3676857 | None:intergenic | 35.0% | |
| AGCTAACAATATCAAGCCTT+TGG | - | chr6.1:3674744-3674763 | None:intergenic | 35.0% | |
| AGGCCTTTATCCAATATAAG+AGG | - | chr6.1:3674561-3674580 | None:intergenic | 35.0% | |
| ATAAGCAATGAGCCTTTCTT+TGG | - | chr6.1:3675556-3675575 | None:intergenic | 35.0% | |
| ATACATGTCTGATACGTCTT+TGG | - | chr6.1:3675269-3675288 | None:intergenic | 35.0% | |
| ATCTTGCGATCTCTTTAATG+AGG | - | chr6.1:3675173-3675192 | None:intergenic | 35.0% | |
| ATTCGCAATTGACAACATTG+AGG | - | chr6.1:3674796-3674815 | None:intergenic | 35.0% | |
| CAAAAACAAGCCAATCCAAA+TGG | + | chr6.1:3673471-3673490 | MS.gene54679:intron | 35.0% | |
| CACCGAATATTACCAAAGAA+AGG | + | chr6.1:3675541-3675560 | MS.gene54679:intron | 35.0% | |
| CCAAAACAACAAAGAAGACA+TGG | - | chr6.1:3674271-3674290 | None:intergenic | 35.0% | |
| CCAATATAGGTATCAAGAGA+GGG | - | chr6.1:3676837-3676856 | None:intergenic | 35.0% | |
| CTAGTGTGAGTTGTAAACTT+TGG | + | chr6.1:3675496-3675515 | MS.gene54679:intron | 35.0% | |
| GCATCAATGTTGTTAAGTAG+TGG | + | chr6.1:3676660-3676679 | MS.gene54679:intron | 35.0% | |
| GGCGAGATTTGAAAAATACT+AGG | - | chr6.1:3676816-3676835 | None:intergenic | 35.0% | |
| TAAAGTATGTATGTGGCACT+AGG | + | chr6.1:3676015-3676034 | MS.gene54679:intron | 35.0% | |
| TCATTTATAAAGGGCCTCTT+TGG | + | chr6.1:3673893-3673912 | MS.gene54679:intron | 35.0% | |
| TCTTGTAGACTTGAGTTTGA+TGG | + | chr6.1:3676309-3676328 | MS.gene54679:CDS | 35.0% | |
| TGAGTCTGTTTGAGAGTTTA+AGG | + | chr6.1:3673583-3673602 | MS.gene54679:intron | 35.0% | |
| TGTAACAGATTCAGGGTATA+TGG | + | chr6.1:3676938-3676957 | MS.gene54679:intron | 35.0% | |
| TGTGATGTTGAACCACTAAA+TGG | + | chr6.1:3673867-3673886 | MS.gene54679:intron | 35.0% | |
| TGTTGGATTGTATTGCATAG+TGG | + | chr6.1:3674992-3675011 | MS.gene54679:intron | 35.0% | |
| TTACGGAGGAAGAACTAATA+TGG | + | chr6.1:3675428-3675447 | MS.gene54679:CDS | 35.0% | |
| TTAGACGTTACATTGGCATT+TGG | + | chr6.1:3677125-3677144 | MS.gene54679:intron | 35.0% | |
| TTCTTTACCTCAAGAAACTG+AGG | + | chr6.1:3674377-3674396 | MS.gene54679:CDS | 35.0% | |
| TTGAACTACTAGAGCATGTT+TGG | + | chr6.1:3673521-3673540 | MS.gene54679:intron | 35.0% | |
| TTGCAAAGGAATCATGCTAT+AGG | + | chr6.1:3675648-3675667 | MS.gene54679:CDS | 35.0% | |
| TTGTGTAGTACTAGCATAAG+CGG | + | chr6.1:3673560-3673579 | MS.gene54679:intron | 35.0% | |
| ! | AAAGTGTCTCAAACCTGATA+AGG | - | chr6.1:3674495-3674514 | None:intergenic | 35.0% |
| ! | AGTGTTTTCATTTTCCAAGC+AGG | + | chr6.1:3674320-3674339 | MS.gene54679:intron | 35.0% |
| ! | CTTATGGTAATGTCATAAGC+TGG | - | chr6.1:3673611-3673630 | None:intergenic | 35.0% |
| ! | GCTTATTTCTTCATCCAAAG+AGG | - | chr6.1:3673910-3673929 | None:intergenic | 35.0% |
| ! | TTTATCCAAACTGGCCTAAA+TGG | + | chr6.1:3674185-3674204 | MS.gene54679:intron | 35.0% |
| !! | AAGAAGACATGGTTGTTTTC+AGG | - | chr6.1:3674260-3674279 | None:intergenic | 35.0% |
| !!! | CCATGTCTTCTTTGTTGTTT+TGG | + | chr6.1:3674268-3674287 | MS.gene54679:intron | 35.0% |
| AAACCACTCATGAGACTGTT+TGG | + | chr6.1:3673950-3673969 | MS.gene54679:intron | 40.0% | |
| AAACTTGCCAGAGACACAAA+TGG | - | chr6.1:3675063-3675082 | None:intergenic | 40.0% | |
| AACCACTCATGAGACTGTTT+GGG | + | chr6.1:3673951-3673970 | MS.gene54679:intron | 40.0% | |
| AACTAAGGGACCATTTGGAT+TGG | - | chr6.1:3673484-3673503 | None:intergenic | 40.0% | |
| ACAGCGTTATAGCTGTAACT+TGG | + | chr6.1:3674856-3674875 | MS.gene54679:intron | 40.0% | |
| AGATACTCCTCAGTTTCTTG+AGG | - | chr6.1:3674387-3674406 | None:intergenic | 40.0% | |
| ATGTCGTCACCGATAATCAT+TGG | + | chr6.1:3674593-3674612 | MS.gene54679:intron | 40.0% | |
| CAAAGGAATCATGCTATAGG+TGG | + | chr6.1:3675651-3675670 | MS.gene54679:CDS | 40.0% | |
| CCAGAAAATTCCGATCAACA+AGG | - | chr6.1:3675975-3675994 | None:intergenic | 40.0% | |
| CCCTCTCTTGATACCTATAT+TGG | + | chr6.1:3676834-3676853 | MS.gene54679:intron | 40.0% | |
| CCTTTGGACACACAAAACAA+GGG | - | chr6.1:3674728-3674747 | None:intergenic | 40.0% | |
| CGAATCGCAAATGACAATAG+TGG | + | chr6.1:3674811-3674830 | MS.gene54679:intron | 40.0% | |
| CGAATTATGCAATGAAGCCA+AGG | + | chr6.1:3676984-3677003 | MS.gene54679:CDS | 40.0% | |
| CGTGATTTGACCTTGTTGAT+CGG | + | chr6.1:3675962-3675981 | MS.gene54679:intron | 40.0% | |
| CTTGTCTCACATGGACTTAA+GGG | + | chr6.1:3674405-3674424 | MS.gene54679:CDS | 40.0% | |
| GAATCGACACTTCACATTGA+AGG | - | chr6.1:3674691-3674710 | None:intergenic | 40.0% | |
| GATAGACCTAAGAAGAGACA+TGG | - | chr6.1:3676475-3676494 | None:intergenic | 40.0% | |
| GCTATAACGCTGTAGCATAA+TGG | - | chr6.1:3674849-3674868 | None:intergenic | 40.0% | |
| GTCTCTGGCAAGTTTGTAAT+TGG | + | chr6.1:3675068-3675087 | MS.gene54679:intron | 40.0% | |
| GTTCTTCCTCCGTAAGAATA+TGG | - | chr6.1:3675423-3675442 | None:intergenic | 40.0% | |
| TAACTGCCATGTCTCTTCTT+AGG | + | chr6.1:3676466-3676485 | MS.gene54679:intron | 40.0% | |
| TATAAGCACATCCGTGTTCA+AGG | + | chr6.1:3676584-3676603 | MS.gene54679:CDS | 40.0% | |
| TATGTTCTTCTCCCAGCTTA+TGG | + | chr6.1:3673244-3673263 | MS.gene54679:intron | 40.0% | |
| TCGGTGAAAATTCATGGTTG+AGG | - | chr6.1:3675527-3675546 | None:intergenic | 40.0% | |
| TCTTGTCTCACATGGACTTA+AGG | + | chr6.1:3674404-3674423 | MS.gene54679:CDS | 40.0% | |
| TGCATAACTAAGGGACCATT+TGG | - | chr6.1:3673489-3673508 | None:intergenic | 40.0% | |
| TGCGTATCACAGAACAATAG+TGG | + | chr6.1:3674897-3674916 | MS.gene54679:intron | 40.0% | |
| TGTATGCACTCATTCACAAG+TGG | + | chr6.1:3676128-3676147 | MS.gene54679:intron | 40.0% | |
| TTTCAGGATCCATGTTCTTC+AGG | + | chr6.1:3675124-3675143 | MS.gene54679:intron | 40.0% | |
| ! | CATGTAAATGCGGGTAGTTT+TGG | + | chr6.1:3674453-3674472 | MS.gene54679:CDS | 40.0% |
| ! | CCTTGTTGATCGGAATTTTC+TGG | + | chr6.1:3675972-3675991 | MS.gene54679:intron | 40.0% |
| ! | TATCAGACATGTATCGGTGT+CGG | + | chr6.1:3675275-3675294 | MS.gene54679:intron | 40.0% |
| ! | TCATTTTCCAAGCAGGTTTC+TGG | + | chr6.1:3674327-3674346 | MS.gene54679:intron | 40.0% |
| !! | ACTTGCTGTTTGTCCTTATC+AGG | + | chr6.1:3674479-3674498 | MS.gene54679:CDS | 40.0% |
| !! | AGACATGGTTGTTTTCAGGA+AGG | - | chr6.1:3674256-3674275 | None:intergenic | 40.0% |
| AACCTTGGAGATTTAACGCG+CGG | - | chr6.1:3677363-3677382 | None:intergenic | 45.0% | |
| ACCTTGAAAGCTCTTCGATG+AGG | - | chr6.1:3675460-3675479 | None:intergenic | 45.0% | |
| ATGGCTGACACCTATACATG+TGG | - | chr6.1:3674643-3674662 | None:intergenic | 45.0% | |
| CAGGATCCATATTCTTACGG+AGG | + | chr6.1:3675414-3675433 | MS.gene54679:intron | 45.0% | |
| CATGTATAGGTGTCAGCCAT+CGG | + | chr6.1:3674643-3674662 | MS.gene54679:intron | 45.0% | |
| CGCGTTAAATCTCCAAGGTT+AGG | + | chr6.1:3677363-3677382 | MS.gene54679:CDS | 45.0% | |
| CTATACTGCGTGCTGAAGAT+GGG | + | chr6.1:3676370-3676389 | MS.gene54679:CDS | 45.0% | |
| GCCTTTGGACACACAAAACA+AGG | - | chr6.1:3674729-3674748 | None:intergenic | 45.0% | |
| GGAGCTTGGACGTAATCTTA+TGG | - | chr6.1:3676082-3676101 | None:intergenic | 45.0% | |
| TAGGTCTATCGTTTGCGTGA+AGG | + | chr6.1:3676485-3676504 | MS.gene54679:intron | 45.0% | |
| TATCGTTTGCGTGAAGGAGT+TGG | + | chr6.1:3676491-3676510 | MS.gene54679:CDS | 45.0% | |
| TCCTCATCGAAGAGCTTTCA+AGG | + | chr6.1:3675456-3675475 | MS.gene54679:CDS | 45.0% | |
| TTCAGGAGGAGGAACTGTTA+TGG | + | chr6.1:3675141-3675160 | MS.gene54679:CDS | 45.0% | |
| ! | AGTGCTGCTCATGTAAATGC+GGG | + | chr6.1:3674444-3674463 | MS.gene54679:CDS | 45.0% |
| ! | CACACTAGCATCAAGTTGTG+TGG | - | chr6.1:3675484-3675503 | None:intergenic | 45.0% |
| ! | CAGTGCTGCTCATGTAAATG+CGG | + | chr6.1:3674443-3674462 | MS.gene54679:CDS | 45.0% |
| ! | GCTTATGCCATTTGTGTCTC+TGG | + | chr6.1:3675053-3675072 | MS.gene54679:intron | 45.0% |
| ! | TATTTAGGGCCCGTTTGGAT+TGG | + | chr6.1:3673279-3673298 | MS.gene54679:intron | 45.0% |
| ! | TTCTGTATTTAGGGCCCGTT+TGG | + | chr6.1:3673274-3673293 | MS.gene54679:intron | 45.0% |
| ! | TTGAAGGTGTGTTCAGTGTC+CGG | - | chr6.1:3674675-3674694 | None:intergenic | 45.0% |
| !! | AGCAGCACTGATAGAGTAAG+TGG | - | chr6.1:3674433-3674452 | None:intergenic | 45.0% |
| !! | AGTTTGATGGTGCGTGCAAA+GGG | + | chr6.1:3676322-3676341 | MS.gene54679:CDS | 45.0% |
| !! | GAGGAGTATCTTGTCTCACA+TGG | + | chr6.1:3674396-3674415 | MS.gene54679:CDS | 45.0% |
| !!! | CCCTTGTTTTGTGTGTCCAA+AGG | + | chr6.1:3674725-3674744 | MS.gene54679:intron | 45.0% |
| AAACCTGATTGCACACGAGC+AGG | - | chr6.1:3676616-3676635 | None:intergenic | 50.0% | |
| AACCGCGCGTTAAATCTCCA+AGG | + | chr6.1:3677358-3677377 | MS.gene54679:CDS | 50.0% | |
| AACCTGATTGCACACGAGCA+GGG | - | chr6.1:3676615-3676634 | None:intergenic | 50.0% | |
| AGCTTCACCAGAAACCTGCT+TGG | - | chr6.1:3674337-3674356 | None:intergenic | 50.0% | |
| AGGGTACACTCGTAGTCACT+TGG | + | chr6.1:3677051-3677070 | MS.gene54679:intron | 50.0% | |
| CAGGATCCATGTTCTTCAGG+AGG | + | chr6.1:3675127-3675146 | MS.gene54679:intron | 50.0% | |
| CGGGCAATTAATAGGGAGCT+TGG | - | chr6.1:3676096-3676115 | None:intergenic | 50.0% | |
| CTCCCAAACAGTCTCATGAG+TGG | - | chr6.1:3673956-3673975 | None:intergenic | 50.0% | |
| GACGACATGCAGTGCTTCAT+AGG | - | chr6.1:3674581-3674600 | None:intergenic | 50.0% | |
| GAGCTCCATTTAGGCCAGTT+TGG | - | chr6.1:3674193-3674212 | None:intergenic | 50.0% | |
| GATCCATGTTCTTCAGGAGG+AGG | + | chr6.1:3675130-3675149 | MS.gene54679:CDS | 50.0% | |
| GCTATACTGCGTGCTGAAGA+TGG | + | chr6.1:3676369-3676388 | MS.gene54679:CDS | 50.0% | |
| GTTCCTCCTCCTGAAGAACA+TGG | - | chr6.1:3675136-3675155 | None:intergenic | 50.0% | |
| !! | GAGTTTGATGGTGCGTGCAA+AGG | + | chr6.1:3676321-3676340 | MS.gene54679:CDS | 50.0% |
| !! | TATCGGTGTCGGATACGTGT+CGG | + | chr6.1:3675286-3675305 | MS.gene54679:intron | 50.0% |
| AAAGGGAATCCTGGACCAGC+TGG | + | chr6.1:3676339-3676358 | MS.gene54679:CDS | 55.0% | |
| AGTATAGCTCCAGCACCAGC+TGG | - | chr6.1:3676357-3676376 | None:intergenic | 55.0% | |
| CGTGTCGGACACCGATACTT+TGG | + | chr6.1:3675301-3675320 | MS.gene54679:intron | 55.0% | |
| GCAGGGAGTCTCCTTGAACA+CGG | - | chr6.1:3676598-3676617 | None:intergenic | 55.0% | |
| AATCCTGGACCAGCTGGTGC+TGG | + | chr6.1:3676345-3676364 | MS.gene54679:CDS | 60.0% | |
| CTCCCTGCTCGTGTGCAATC+AGG | + | chr6.1:3676610-3676629 | MS.gene54679:CDS | 60.0% | |
| GCGTGCTGAAGATGGGAGCA+AGG | + | chr6.1:3676377-3676396 | MS.gene54679:CDS | 60.0% | |
| GGTGCGTGCAAAGGGAATCC+TGG | + | chr6.1:3676330-3676349 | MS.gene54679:CDS | 60.0% | |
| TGTCAGCCATCGGCATGTGC+CGG | + | chr6.1:3674653-3674672 | MS.gene54679:intron | 60.0% | |
| CAGTGTCCGGCACATGCCGA+TGG | - | chr6.1:3674662-3674681 | None:intergenic | 65.0% | |
| GCTCCAGCACCAGCTGGTCC+AGG | - | chr6.1:3676351-3676370 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3673045 | 3677384 | 3673045 | ID=MS.gene54679 |
| chr6.1 | mRNA | 3673045 | 3677384 | 3673045 | ID=MS.gene54679.t1;Parent=MS.gene54679 |
| chr6.1 | exon | 3673045 | 3673143 | 3673045 | ID=MS.gene54679.t1.exon1;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3673045 | 3673143 | 3673045 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3674342 | 3674500 | 3674342 | ID=MS.gene54679.t1.exon2;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3674342 | 3674500 | 3674342 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3675130 | 3675213 | 3675130 | ID=MS.gene54679.t1.exon3;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3675130 | 3675213 | 3675130 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3675417 | 3675500 | 3675417 | ID=MS.gene54679.t1.exon4;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3675417 | 3675500 | 3675417 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3675615 | 3675710 | 3675615 | ID=MS.gene54679.t1.exon5;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3675615 | 3675710 | 3675615 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3676306 | 3676398 | 3676306 | ID=MS.gene54679.t1.exon6;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3676306 | 3676398 | 3676306 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3676488 | 3676631 | 3676488 | ID=MS.gene54679.t1.exon7;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3676488 | 3676631 | 3676488 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3676946 | 3677053 | 3676946 | ID=MS.gene54679.t1.exon8;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3676946 | 3677053 | 3676946 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| chr6.1 | exon | 3677328 | 3677384 | 3677328 | ID=MS.gene54679.t1.exon9;Parent=MS.gene54679.t1 |
| chr6.1 | CDS | 3677328 | 3677384 | 3677328 | ID=cds.MS.gene54679.t1;Parent=MS.gene54679.t1 |
| Gene Sequence |
| Protein sequence |
