Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54691.t1 | RHN75196.1 | 93.4 | 61 | 4 | 0 | 56 | 116 | 498 | 558 | 9.50E-20 | 107.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54691.t1 | A0A072VBM0 | 93.4 | 61 | 4 | 0 | 56 | 116 | 498 | 558 | 6.9e-20 | 107.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene54691 | 0.820304 | 7.36E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene54691 | 0.823172 | 1.60E-53 | -1.69E-46 |
| MS.gene060036 | MS.gene54691 | 0.813573 | 2.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54691.t1 | MTR_2g081100 | 92.424 | 66 | 5 | 0 | 56 | 121 | 498 | 563 | 1.99e-32 | 125 |
| MS.gene54691.t1 | MTR_2g081100 | 92.424 | 66 | 5 | 0 | 56 | 121 | 498 | 563 | 2.54e-32 | 125 |
| MS.gene54691.t1 | MTR_3g069790 | 83.929 | 56 | 9 | 0 | 118 | 173 | 97 | 152 | 6.61e-27 | 107 |
| MS.gene54691.t1 | MTR_8g020470 | 82.143 | 56 | 10 | 0 | 193 | 248 | 126 | 181 | 3.23e-21 | 92.8 |
| MS.gene54691.t1 | MTR_8g020470 | 76.000 | 50 | 12 | 0 | 193 | 242 | 269 | 318 | 1.97e-14 | 72.8 |
| MS.gene54691.t1 | MTR_8g020470 | 82.143 | 56 | 10 | 0 | 193 | 248 | 126 | 181 | 3.77e-21 | 92.4 |
| MS.gene54691.t1 | MTR_8g020470 | 76.000 | 50 | 12 | 0 | 193 | 242 | 192 | 241 | 2.35e-14 | 72.8 |
| MS.gene54691.t1 | MTR_8g020400 | 76.000 | 50 | 12 | 0 | 193 | 242 | 353 | 402 | 4.10e-15 | 74.7 |
| MS.gene54691.t1 | MTR_8g020470 | 76.000 | 50 | 12 | 0 | 193 | 242 | 126 | 175 | 1.86e-14 | 72.8 |
| MS.gene54691.t1 | MTR_8g020480 | 69.643 | 56 | 16 | 1 | 193 | 248 | 163 | 217 | 7.06e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54691.t1 | AT4G15640 | 66.667 | 51 | 17 | 0 | 122 | 172 | 115 | 165 | 2.26e-17 | 80.9 |
| MS.gene54691.t1 | AT4G15640 | 66.667 | 51 | 17 | 0 | 122 | 172 | 54 | 104 | 2.45e-17 | 80.5 |
| MS.gene54691.t1 | AT3G21465 | 61.818 | 55 | 21 | 0 | 118 | 172 | 109 | 163 | 1.60e-16 | 78.6 |
| MS.gene54691.t1 | AT3G21465 | 61.818 | 55 | 21 | 0 | 118 | 172 | 114 | 168 | 1.95e-16 | 78.2 |
Find 51 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCGGAGCCCTTGATTT+TGG | 0.211020 | 6.1:-3806277 | MS.gene54691:intron |
| ACGACTAATAAAGCTCTTTA+TGG | 0.213223 | 6.1:-3805858 | MS.gene54691:CDS |
| AGTGAATGTGATTATGATAT+TGG | 0.259609 | 6.1:-3806153 | MS.gene54691:CDS |
| ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 6.1:-3807177 | MS.gene54691:intron |
| AGTTGAACTATGTGACATTA+AGG | 0.327662 | 6.1:-3807193 | MS.gene54691:CDS |
| GTCATGTGGTGGTGCAGTTT+TGG | 0.348116 | 6.1:-3808314 | MS.gene54691:CDS |
| CACGATATTAGTCTTCTCTT+TGG | 0.348420 | 6.1:-3806518 | MS.gene54691:CDS |
| CCTTTCCGACCTCTGGTGCT+TGG | 0.384030 | 6.1:+3806569 | None:intergenic |
| TATGATATTGGATTTGTGTT+TGG | 0.403286 | 6.1:-3806141 | MS.gene54691:CDS |
| TCCTGGTGCTCAGTCCTTTG+AGG | 0.403956 | 6.1:-3806809 | MS.gene54691:intron |
| TGAAAATGTGATCACAATCA+TGG | 0.410902 | 6.1:-3807276 | MS.gene54691:CDS |
| CATCATTTGAGAGGCTAGAT+TGG | 0.414081 | 6.1:+3805881 | None:intergenic |
| AACAGATCCTTTCCGACCTC+TGG | 0.421775 | 6.1:+3806562 | None:intergenic |
| GCCGGCGCAAAATGTTGATT+TGG | 0.432308 | 6.1:-3805988 | MS.gene54691:CDS |
| ACCTCAAAGGACTGAGCACC+AGG | 0.444661 | 6.1:+3806808 | None:intergenic |
| TCTGTTGGACAGTCACTTCA+AGG | 0.445351 | 6.1:-3805936 | MS.gene54691:CDS |
| GATAAAGCATACCAAAATCA+AGG | 0.451714 | 6.1:+3806266 | None:intergenic |
| TCATCATCGCTGAAGGAAAC+CGG | 0.458878 | 6.1:+3806620 | None:intergenic |
| AGTGAATTGTGAAGATTCCT+TGG | 0.462054 | 6.1:+3806831 | None:intergenic |
| CAGAAGCAGCAGCTGACAGC+AGG | 0.476026 | 6.1:-3805834 | MS.gene54691:CDS |
| TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 6.1:-3806639 | MS.gene54691:CDS |
| CGAGTACCCGTGCGGATGCA+CGG | 0.489614 | 6.1:-3808896 | None:intergenic |
| CAAGGAATGCAACAAGCCAT+TGG | 0.490242 | 6.1:-3805918 | MS.gene54691:CDS |
| TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 6.1:-3806869 | MS.gene54691:intron |
| CAACAAGCCATTGGGACGAT+GGG | 0.497397 | 6.1:-3805909 | MS.gene54691:CDS |
| TTTCAAGGAAGAAGTGCAGC+TGG | 0.507793 | 6.1:-3806653 | MS.gene54691:CDS |
| AACTATGTGACATTAAGGCT+TGG | 0.508498 | 6.1:-3807188 | MS.gene54691:CDS |
| AAGGAATGCAACAAGCCATT+GGG | 0.510409 | 6.1:-3805917 | MS.gene54691:CDS |
| CCTCTGTCGTGAAGTTACTA+AGG | 0.511005 | 6.1:-3806308 | MS.gene54691:CDS |
| ATTTGTTGGGTTTACCTCAA+AGG | 0.513130 | 6.1:+3806795 | None:intergenic |
| GAAAATGTGATCACAATCAT+GGG | 0.515424 | 6.1:-3807275 | MS.gene54691:CDS |
| GAGTACCCGTGCGGATGCAC+GGG | 0.520922 | 6.1:-3808895 | None:intergenic |
| GAATCTTCACAATTCACTCC+TGG | 0.551056 | 6.1:-3806826 | MS.gene54691:CDS |
| GGAGCGATCTACGCGCTCCA+AGG | 0.554334 | 6.1:-3806848 | MS.gene54691:CDS |
| CATACCAAAATCAAGGGCTC+CGG | 0.557396 | 6.1:+3806273 | None:intergenic |
| GCAACAAGCCATTGGGACGA+TGG | 0.566097 | 6.1:-3805910 | MS.gene54691:CDS |
| ATTAGTCGTCATCATTTGAG+AGG | 0.566843 | 6.1:+3805872 | None:intergenic |
| GGCATCTTCATCATCGCTGA+AGG | 0.569407 | 6.1:+3806613 | None:intergenic |
| CCAAGCACCAGAGGTCGGAA+AGG | 0.579149 | 6.1:-3806569 | MS.gene54691:CDS |
| GGACGACCCCATCGTCCCAA+TGG | 0.589724 | 6.1:+3805902 | None:intergenic |
| ATTCGCAGAAGAAAATTGCA+AGG | 0.595418 | 6.1:+3805959 | None:intergenic |
| ATAAAGCATACCAAAATCAA+GGG | 0.599353 | 6.1:+3806267 | None:intergenic |
| ACTAAGGCATGTGTTCATGC+CGG | 0.606524 | 6.1:-3806292 | MS.gene54691:CDS |
| AGCTCAAAACCAAGCACCAG+AGG | 0.612912 | 6.1:-3806578 | MS.gene54691:CDS |
| TGCGATTCTTCATAGTCATG+TGG | 0.631281 | 6.1:-3808328 | MS.gene54691:intron |
| CAAAACCAAGCACCAGAGGT+CGG | 0.635046 | 6.1:-3806574 | MS.gene54691:CDS |
| AGAGAAGACTAATATCGTGA+CGG | 0.668184 | 6.1:+3806522 | None:intergenic |
| TAGTAACTTCACGACAGAGG+TGG | 0.668692 | 6.1:+3806311 | None:intergenic |
| AACAAGCCATTGGGACGATG+GGG | 0.676860 | 6.1:-3805908 | MS.gene54691:CDS |
| CCTTAGTAACTTCACGACAG+AGG | 0.686364 | 6.1:+3806308 | None:intergenic |
| GATTCTTCATAGTCATGTGG+TGG | 0.714977 | 6.1:-3808325 | MS.gene54691:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTATAGTTG+AGG | - | chr6.1:3806754-3806773 | MS.gene54691:intron | 10.0% |
| !! | AATGTATAATATCATTTGTT+GGG | + | chr6.1:3807926-3807945 | None:intergenic | 15.0% |
| !! | ATTGAAAGAAAGAAAAAAAA+AGG | + | chr6.1:3808265-3808284 | None:intergenic | 15.0% |
| !! | AGAAATTATCAATTGTTTGT+TGG | - | chr6.1:3807190-3807209 | MS.gene54691:CDS | 20.0% |
| !! | AGTTTAAAAATATGAGAGAA+AGG | - | chr6.1:3806837-3806856 | MS.gene54691:CDS | 20.0% |
| !! | ATACATAACAATGATAAAAC+AGG | + | chr6.1:3806447-3806466 | None:intergenic | 20.0% |
| !! | CAATGTATAATATCATTTGT+TGG | + | chr6.1:3807927-3807946 | None:intergenic | 20.0% |
| !! | GTTTAAAAATATGAGAGAAA+GGG | - | chr6.1:3806838-3806857 | MS.gene54691:CDS | 20.0% |
| !! | TCAAACAACAGAAAATTAAA+TGG | + | chr6.1:3807307-3807326 | None:intergenic | 20.0% |
| !! | TGAAAATTATGTAAAAAGCA+GGG | - | chr6.1:3807965-3807984 | MS.gene54691:intron | 20.0% |
| !! | TTGAAAATTATGTAAAAAGC+AGG | - | chr6.1:3807964-3807983 | MS.gene54691:intron | 20.0% |
| !! | TTGTGATCAGAATTATTTAA+TGG | - | chr6.1:3807568-3807587 | MS.gene54691:intron | 20.0% |
| !!! | AATGTGTTGTTTTGATAAAA+AGG | - | chr6.1:3807393-3807412 | MS.gene54691:intron | 20.0% |
| !!! | ATGTGTTGTTTTGATAAAAA+GGG | - | chr6.1:3807394-3807413 | MS.gene54691:intron | 20.0% |
| !!! | TATGATATCGAATTTTTGTT+TGG | - | chr6.1:3808514-3808533 | MS.gene54691:intron | 20.0% |
| !!! | TCATTTTTCAAGCAATTTTA+TGG | - | chr6.1:3807478-3807497 | MS.gene54691:intron | 20.0% |
| !!! | TTGTGATCAGAATTATTTTA+TGG | - | chr6.1:3807775-3807794 | MS.gene54691:intron | 20.0% |
| !!! | TTGTTGTTCTTAGAATAAAA+AGG | - | chr6.1:3806894-3806913 | MS.gene54691:intron | 20.0% |
| ! | AAAGAAAAAAAAAGGTGAGA+GGG | + | chr6.1:3808257-3808276 | None:intergenic | 25.0% |
| ! | AAATTCGATTTACTGTTCAT+GGG | + | chr6.1:3806204-3806223 | None:intergenic | 25.0% |
| ! | AAGAAATAAGCTAAGAATGA+AGG | + | chr6.1:3808017-3808036 | None:intergenic | 25.0% |
| ! | ACCAAAGAAATTTCATCAAT+TGG | + | chr6.1:3806039-3806058 | None:intergenic | 25.0% |
| ! | AGTGAATGTGATTATGATAT+TGG | - | chr6.1:3808552-3808571 | MS.gene54691:intron | 25.0% |
| ! | ATAAAGCATACCAAAATCAA+GGG | + | chr6.1:3808441-3808460 | None:intergenic | 25.0% |
| ! | GGCAAAAATGGAATTATATA+GGG | + | chr6.1:3805980-3805999 | None:intergenic | 25.0% |
| ! | GTTACTAGTTAATATCCAAA+AGG | - | chr6.1:3805836-3805855 | MS.gene54691:CDS | 25.0% |
| ! | TAAAACAGGAAACACAAAAA+AGG | + | chr6.1:3806433-3806452 | None:intergenic | 25.0% |
| ! | TATGATATTGGATTTGTGTT+TGG | - | chr6.1:3808564-3808583 | MS.gene54691:intron | 25.0% |
| ! | TCCAATTGATGAAATTTCTT+TGG | - | chr6.1:3806035-3806054 | MS.gene54691:intron | 25.0% |
| ! | TGAATATGAGATTCTTTATG+AGG | - | chr6.1:3807147-3807166 | MS.gene54691:intron | 25.0% |
| ! | TGTAAATGTGATTATGAGAT+TGG | - | chr6.1:3808678-3808697 | MS.gene54691:intron | 25.0% |
| ! | TTGTTCTTAGAATAAAAAGG+AGG | - | chr6.1:3806897-3806916 | MS.gene54691:intron | 25.0% |
| !! | CTATTAAAGTGATATCCTTT+TGG | + | chr6.1:3805854-3805873 | None:intergenic | 25.0% |
| !! | GGACAGAATTTATCATATTT+TGG | + | chr6.1:3805899-3805918 | None:intergenic | 25.0% |
| !! | TAATTTTGTGAATGTGATCA+TGG | - | chr6.1:3808588-3808607 | MS.gene54691:intron | 25.0% |
| !! | TTATTTCTTTATTCCGTACA+GGG | - | chr6.1:3808028-3808047 | MS.gene54691:intron | 25.0% |
| !! | TTGTTGTTGAGAATTAAGAA+TGG | - | chr6.1:3807010-3807029 | MS.gene54691:intron | 25.0% |
| !!! | ATCGTTTTTCTTTTTGTTCT+AGG | - | chr6.1:3807824-3807843 | MS.gene54691:intron | 25.0% |
| !!! | ATTTCTTGGTTTTGTTTTGT+TGG | - | chr6.1:3806782-3806801 | MS.gene54691:intron | 25.0% |
| !!! | TTTCAACGTTTTTTCTTTCT+GGG | - | chr6.1:3806961-3806980 | MS.gene54691:intron | 25.0% |
| !!! | TTTTCAACGTTTTTTCTTTC+TGG | - | chr6.1:3806960-3806979 | MS.gene54691:intron | 25.0% |
| AAAGCCAACAAATGACATTA+AGG | - | chr6.1:3807719-3807738 | MS.gene54691:intron | 30.0% | |
| AAATGTTAGTGGAAACAATG+AGG | + | chr6.1:3806066-3806085 | None:intergenic | 30.0% | |
| AAGAAAAAAAAAGGTGAGAG+GGG | + | chr6.1:3808256-3808275 | None:intergenic | 30.0% | |
| AATTCGATTTACTGTTCATG+GGG | + | chr6.1:3806203-3806222 | None:intergenic | 30.0% | |
| ACGACTAATAAAGCTCTTTA+TGG | - | chr6.1:3808847-3808866 | MS.gene54691:intron | 30.0% | |
| AGAAATTCTTAGAGTGTGTT+TGG | - | chr6.1:3806489-3806508 | MS.gene54691:intron | 30.0% | |
| AGTTGAACTATGTGACATTA+AGG | - | chr6.1:3807512-3807531 | MS.gene54691:intron | 30.0% | |
| ATATATAGCCCAAATGTTAG+TGG | + | chr6.1:3806077-3806096 | None:intergenic | 30.0% | |
| ATGAAACCACAATTTGAAGA+AGG | + | chr6.1:3806112-3806131 | None:intergenic | 30.0% | |
| CAAATTCGATTTACTGTTCA+TGG | + | chr6.1:3806205-3806224 | None:intergenic | 30.0% | |
| CATTGTTTCCACTAACATTT+GGG | - | chr6.1:3806066-3806085 | MS.gene54691:intron | 30.0% | |
| GAAAATGTGATCACAATCAT+GGG | - | chr6.1:3807430-3807449 | MS.gene54691:intron | 30.0% | |
| GAAAGAAAAAAAAAGGTGAG+AGG | + | chr6.1:3808258-3808277 | None:intergenic | 30.0% | |
| GAAGGAATTCAAATACTTTG+AGG | - | chr6.1:3806626-3806645 | MS.gene54691:CDS | 30.0% | |
| GAGATGAAAATTATGTGCTT+GGG | - | chr6.1:3807276-3807295 | MS.gene54691:CDS | 30.0% | |
| GAGGAAATGTAATGTTATGA+AGG | - | chr6.1:3806608-3806627 | MS.gene54691:CDS | 30.0% | |
| GATAAAGCATACCAAAATCA+AGG | + | chr6.1:3808442-3808461 | None:intergenic | 30.0% | |
| GGGCAAAAATGGAATTATAT+AGG | + | chr6.1:3805981-3806000 | None:intergenic | 30.0% | |
| TCATTGTTTCCACTAACATT+TGG | - | chr6.1:3806065-3806084 | MS.gene54691:intron | 30.0% | |
| TCATTTCCTTCTTCAAATTG+TGG | - | chr6.1:3806103-3806122 | MS.gene54691:intron | 30.0% | |
| TGAAAATGTGATCACAATCA+TGG | - | chr6.1:3807429-3807448 | MS.gene54691:intron | 30.0% | |
| TGAGATGAAAATTATGTGCT+TGG | - | chr6.1:3807275-3807294 | MS.gene54691:CDS | 30.0% | |
| TTAATCTATTTGATGAGCAG+AGG | - | chr6.1:3808336-3808355 | MS.gene54691:intron | 30.0% | |
| ! | AAACACACTCTAAGAATTTC+TGG | + | chr6.1:3806490-3806509 | None:intergenic | 30.0% |
| ! | ATTAAGGCTTGGTTTCATTA+AGG | - | chr6.1:3807528-3807547 | MS.gene54691:intron | 30.0% |
| ! | CTTATTTCTTTATTCCGTAC+AGG | - | chr6.1:3808027-3808046 | MS.gene54691:intron | 30.0% |
| ! | CTTTGTGTACAAATTTTTGC+TGG | - | chr6.1:3807044-3807063 | MS.gene54691:intron | 30.0% |
| ! | TATGTAAAAAGCAGGGTTTT+GGG | - | chr6.1:3807972-3807991 | MS.gene54691:intron | 30.0% |
| ! | TGATCATGGTATTGAATTTG+TGG | - | chr6.1:3808602-3808621 | MS.gene54691:intron | 30.0% |
| ! | TTATGTAAAAAGCAGGGTTT+TGG | - | chr6.1:3807971-3807990 | MS.gene54691:intron | 30.0% |
| !! | GGTAATTTGCTAATCCTTAA+TGG | - | chr6.1:3806918-3806937 | MS.gene54691:intron | 30.0% |
| !! | GTTTTGATAAAAAGGGAATC+AGG | - | chr6.1:3807401-3807420 | MS.gene54691:intron | 30.0% |
| !! | TGATCGATTTTTAATCCCTT+TGG | - | chr6.1:3807229-3807248 | MS.gene54691:CDS | 30.0% |
| !!! | TAGTTGAGGTTTTGATTTCT+TGG | - | chr6.1:3806768-3806787 | MS.gene54691:intron | 30.0% |
| !!! | TATATAGGGCTTGTTTTTTC+TGG | + | chr6.1:3805966-3805985 | None:intergenic | 30.0% |
| !!! | TTCAACGTTTTTTCTTTCTG+GGG | - | chr6.1:3806962-3806981 | MS.gene54691:intron | 30.0% |
| !!! | TTGTCTCAAGATTTTTTGTG+TGG | - | chr6.1:3808472-3808491 | MS.gene54691:intron | 30.0% |
| AACTATGTGACATTAAGGCT+TGG | - | chr6.1:3807517-3807536 | MS.gene54691:intron | 35.0% | |
| AATTCCAGACACATCCATTA+AGG | + | chr6.1:3806935-3806954 | None:intergenic | 35.0% | |
| ACGTAAGTATGATCAATGAC+TGG | - | chr6.1:3807602-3807621 | MS.gene54691:intron | 35.0% | |
| AGAATAGTATGATCAGTGAC+TGG | - | chr6.1:3807800-3807819 | MS.gene54691:intron | 35.0% | |
| AGAGAAGACTAATATCGTGA+CGG | + | chr6.1:3808186-3808205 | None:intergenic | 35.0% | |
| AGGAAACACAAAAAAGGATG+AGG | + | chr6.1:3806427-3806446 | None:intergenic | 35.0% | |
| AGTGAACTGTGAATATTCCT+TGG | + | chr6.1:3807676-3807695 | None:intergenic | 35.0% | |
| AGTGAATTGTGAAGATTCCT+TGG | + | chr6.1:3807877-3807896 | None:intergenic | 35.0% | |
| ATTAGTCGTCATCATTTGAG+AGG | + | chr6.1:3808836-3808855 | None:intergenic | 35.0% | |
| ATTCGCAGAAGAAAATTGCA+AGG | + | chr6.1:3808749-3808768 | None:intergenic | 35.0% | |
| CAACAAATGACATTAAGGCT+TGG | - | chr6.1:3807724-3807743 | MS.gene54691:intron | 35.0% | |
| CATGTACACAAAACGAAATC+AGG | + | chr6.1:3806810-3806829 | None:intergenic | 35.0% | |
| GAATATTCACAGTTCACTCT+TGG | - | chr6.1:3807678-3807697 | MS.gene54691:intron | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr6.1:3806527-3806546 | MS.gene54691:CDS | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr6.1:3806545-3806564 | MS.gene54691:CDS | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | - | chr6.1:3806589-3806608 | MS.gene54691:CDS | 35.0% | |
| GTGAATTCCATTGTTTGGAT+GGG | - | chr6.1:3806567-3806586 | MS.gene54691:CDS | 35.0% | |
| TCTTAGAGTGTGTTTGGATA+GGG | - | chr6.1:3806495-3806514 | MS.gene54691:CDS | 35.0% | |
| TGAATTCCATTGTTTGGATG+GGG | - | chr6.1:3806568-3806587 | MS.gene54691:CDS | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | - | chr6.1:3806526-3806545 | MS.gene54691:CDS | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr6.1:3806686-3806705 | None:intergenic | 35.0% | |
| TTCTTAGAGTGTGTTTGGAT+AGG | - | chr6.1:3806494-3806513 | MS.gene54691:CDS | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr6.1:3806562-3806581 | MS.gene54691:CDS | 35.0% | |
| TTTAAGAGTGATCGACCAAA+GGG | + | chr6.1:3807247-3807266 | None:intergenic | 35.0% | |
| ! | ATTTGTTGGGTTTACCTCAA+AGG | + | chr6.1:3807913-3807932 | None:intergenic | 35.0% |
| ! | CAAGCCTTAATGTCATTTGT+TGG | + | chr6.1:3807726-3807745 | None:intergenic | 35.0% |
| ! | CATGGTATTGAATTTGTGGT+TGG | - | chr6.1:3808606-3808625 | MS.gene54691:intron | 35.0% |
| ! | GGTATCGTTCTTTTTGTTCT+AGG | - | chr6.1:3807623-3807642 | MS.gene54691:intron | 35.0% |
| ! | TAATCCTTAATGGATGTGTC+TGG | - | chr6.1:3806928-3806947 | MS.gene54691:intron | 35.0% |
| ! | TTCAAATTGCTGCTTCGATT+TGG | + | chr6.1:3806237-3806256 | None:intergenic | 35.0% |
| ! | TTTTCTTCTGCGAATTCTGT+TGG | - | chr6.1:3808754-3808773 | MS.gene54691:intron | 35.0% |
| !! | ATTTGTTGGCTTTACCTCAA+AGG | + | chr6.1:3807712-3807731 | None:intergenic | 35.0% |
| !! | CACGATATTAGTCTTCTCTT+TGG | - | chr6.1:3808187-3808206 | MS.gene54691:intron | 35.0% |
| !! | TCCATTTTTGCCCTCATTTT+GGG | - | chr6.1:3805988-3806007 | MS.gene54691:CDS | 35.0% |
| !! | TTCCATTTTTGCCCTCATTT+TGG | - | chr6.1:3805987-3806006 | MS.gene54691:CDS | 35.0% |
| !! | TTCTAAAGACTGGTGTGTTT+TGG | + | chr6.1:3806179-3806198 | None:intergenic | 35.0% |
| !! | TTCTGAGATTGGTTTGAGTT+GGG | - | chr6.1:3806326-3806345 | MS.gene54691:CDS | 35.0% |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | - | chr6.1:3807836-3807855 | MS.gene54691:intron | 35.0% |
| !! | TTTTAAGAGTGATCGACCAA+AGG | + | chr6.1:3807248-3807267 | None:intergenic | 35.0% |
| !!! | GTGTTTTGGTTTTACAGAGA+AGG | + | chr6.1:3806165-3806184 | None:intergenic | 35.0% |
| AAGGAATGCAACAAGCCATT+GGG | - | chr6.1:3808788-3808807 | MS.gene54691:intron | 40.0% | |
| CATCATTTGAGAGGCTAGAT+TGG | + | chr6.1:3808827-3808846 | None:intergenic | 40.0% | |
| CGATGAACAGTAATGCGATA+GGG | - | chr6.1:3806303-3806322 | MS.gene54691:CDS | 40.0% | |
| CTCATCCAAACACACTCTTA+GGG | - | chr6.1:3806692-3806711 | MS.gene54691:intron | 40.0% | |
| CTTAGAGTGTGTTTGGATAG+GGG | - | chr6.1:3806496-3806515 | MS.gene54691:CDS | 40.0% | |
| GAATCTTCACAATTCACTCC+TGG | - | chr6.1:3807879-3807898 | MS.gene54691:intron | 40.0% | |
| GAATTCCATTGTTTGGATGG+GGG | - | chr6.1:3806569-3806588 | MS.gene54691:CDS | 40.0% | |
| GATTCTTCATAGTCATGTGG+TGG | - | chr6.1:3806380-3806399 | MS.gene54691:intron | 40.0% | |
| GCTTGCATGTCTTCACAAAA+GGG | - | chr6.1:3806730-3806749 | MS.gene54691:intron | 40.0% | |
| GGTGAATTCCATTGTTTGGA+TGG | - | chr6.1:3806566-3806585 | MS.gene54691:CDS | 40.0% | |
| GTTCTTTGATCTGCTGTTGT+TGG | - | chr6.1:3806348-3806367 | MS.gene54691:CDS | 40.0% | |
| TCGATGAACAGTAATGCGAT+AGG | - | chr6.1:3806302-3806321 | MS.gene54691:CDS | 40.0% | |
| TCTTCCTTGAAAACCCTGTA+CGG | + | chr6.1:3808044-3808063 | None:intergenic | 40.0% | |
| TGCGATTCTTCATAGTCATG+TGG | - | chr6.1:3806377-3806396 | MS.gene54691:intron | 40.0% | |
| TGCTTGCATGTCTTCACAAA+AGG | - | chr6.1:3806729-3806748 | MS.gene54691:intron | 40.0% | |
| ! | ACCAAATCAACATTTTGCGC+CGG | + | chr6.1:3808721-3808740 | None:intergenic | 40.0% |
| ! | CAAAACCCTAAGAGTGTGTT+TGG | + | chr6.1:3806700-3806719 | None:intergenic | 40.0% |
| ! | TATTCCGTACAGGGTTTTCA+AGG | - | chr6.1:3808037-3808056 | MS.gene54691:intron | 40.0% |
| ! | TTCATGGGGTTTCTAAAGAC+TGG | + | chr6.1:3806189-3806208 | None:intergenic | 40.0% |
| ! | TTGGATAGGGGAATGTTTTG+AGG | - | chr6.1:3806508-3806527 | MS.gene54691:CDS | 40.0% |
| ! | TTTTGAGCTTGATGTTGGCA+TGG | + | chr6.1:3808116-3808135 | None:intergenic | 40.0% |
| !! | GTTCTGAGATTGGTTTGAGT+TGG | - | chr6.1:3806325-3806344 | MS.gene54691:CDS | 40.0% |
| !! | TGGATAGGGGAATGTTTTGA+GGG | - | chr6.1:3806509-3806528 | MS.gene54691:CDS | 40.0% |
| !! | TTTGTTCTAGGAACGTGTGA+AGG | - | chr6.1:3807635-3807654 | MS.gene54691:intron | 40.0% |
| !!! | CTTGGTTTTGAGCTTGATGT+TGG | + | chr6.1:3808121-3808140 | None:intergenic | 40.0% |
| ACATTCCCCCATCCAAACAA+TGG | + | chr6.1:3806577-3806596 | None:intergenic | 45.0% | |
| ACTAAGGCATGTGTTCATGC+CGG | - | chr6.1:3808413-3808432 | MS.gene54691:intron | 45.0% | |
| CAAGGAATGCAACAAGCCAT+TGG | - | chr6.1:3808787-3808806 | MS.gene54691:intron | 45.0% | |
| CATACCAAAATCAAGGGCTC+CGG | + | chr6.1:3808435-3808454 | None:intergenic | 45.0% | |
| CCTCATCCAAACACACTCTT+AGG | - | chr6.1:3806691-3806710 | MS.gene54691:intron | 45.0% | |
| CCTCTGTCGTGAAGTTACTA+AGG | - | chr6.1:3808397-3808416 | MS.gene54691:intron | 45.0% | |
| CCTTAGTAACTTCACGACAG+AGG | + | chr6.1:3808400-3808419 | None:intergenic | 45.0% | |
| GCCCAAAATGAGGGCAAAAA+TGG | + | chr6.1:3805992-3806011 | None:intergenic | 45.0% | |
| TAGTAACTTCACGACAGAGG+TGG | + | chr6.1:3808397-3808416 | None:intergenic | 45.0% | |
| TCATCATCGCTGAAGGAAAC+CGG | + | chr6.1:3808088-3808107 | None:intergenic | 45.0% | |
| TCTGTTGGACAGTCACTTCA+AGG | - | chr6.1:3808769-3808788 | MS.gene54691:intron | 45.0% | |
| ! | CCCTAAAGTGCCCAAAATGA+GGG | + | chr6.1:3806001-3806020 | None:intergenic | 45.0% |
| ! | CCCTCATTTTGGGCACTTTA+GGG | - | chr6.1:3805998-3806017 | MS.gene54691:intron | 45.0% |
| ! | CCTAAGAGTGTGTTTGGATG+AGG | + | chr6.1:3806694-3806713 | None:intergenic | 45.0% |
| ! | CCTCATTTTGGGCACTTTAG+GGG | - | chr6.1:3805999-3806018 | MS.gene54691:intron | 45.0% |
| ! | TTTCAAGGAAGAAGTGCAGC+TGG | - | chr6.1:3808052-3808071 | MS.gene54691:intron | 45.0% |
| !! | ATGCGATAGGGTTCTGAGAT+TGG | - | chr6.1:3806315-3806334 | MS.gene54691:CDS | 45.0% |
| !! | GGATCTGTGTTTGTTGTAGC+CGG | - | chr6.1:3808699-3808718 | MS.gene54691:intron | 45.0% |
| !!! | TAAAAAGCAGGGTTTTGGGC+AGG | - | chr6.1:3807976-3807995 | MS.gene54691:intron | 45.0% |
| !!! | TTTAAATAATTTAAAATTCT+AGG | + | chr6.1:3806659-3806678 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTGTTTTAATT+TGG | + | chr6.1:3805920-3805939 | None:intergenic | 5.0% |
| AACAAGCCATTGGGACGATG+GGG | - | chr6.1:3808797-3808816 | MS.gene54691:intron | 50.0% | |
| AACAGATCCTTTCCGACCTC+TGG | + | chr6.1:3808146-3808165 | None:intergenic | 50.0% | |
| AGCTCAAAACCAAGCACCAG+AGG | - | chr6.1:3808127-3808146 | MS.gene54691:intron | 50.0% | |
| CAAAACCAAGCACCAGAGGT+CGG | - | chr6.1:3808131-3808150 | MS.gene54691:intron | 50.0% | |
| CAACAAGCCATTGGGACGAT+GGG | - | chr6.1:3808796-3808815 | MS.gene54691:intron | 50.0% | |
| GGCATCTTCATCATCGCTGA+AGG | + | chr6.1:3808095-3808114 | None:intergenic | 50.0% | |
| ! | CCCCTAAAGTGCCCAAAATG+AGG | + | chr6.1:3806002-3806021 | None:intergenic | 50.0% |
| ! | GCCCTCATTTTGGGCACTTT+AGG | - | chr6.1:3805997-3806016 | MS.gene54691:intron | 50.0% |
| ! | GCCGGCGCAAAATGTTGATT+TGG | - | chr6.1:3808717-3808736 | MS.gene54691:intron | 50.0% |
| !! | GTCATGTGGTGGTGCAGTTT+TGG | - | chr6.1:3806391-3806410 | MS.gene54691:intron | 50.0% |
| !! | TCTTGGTGCTCAGTCCTTTG+AGG | - | chr6.1:3807695-3807714 | MS.gene54691:intron | 50.0% |
| !!! | TGGGCACTTTAGGGGCATTT+TGG | - | chr6.1:3806007-3806026 | MS.gene54691:intron | 50.0% |
| !!! | TGTGGTGGTGCAGTTTTGGA+AGG | - | chr6.1:3806395-3806414 | MS.gene54691:intron | 50.0% |
| ACCTCAAAGGACTGAGCACC+AGG | + | chr6.1:3807699-3807718 | None:intergenic | 55.0% | |
| GCAACAAGCCATTGGGACGA+TGG | - | chr6.1:3808795-3808814 | MS.gene54691:intron | 55.0% | |
| TCCTGGTGCTCAGTCCTTTG+AGG | - | chr6.1:3807896-3807915 | MS.gene54691:intron | 55.0% | |
| TGCAGCTGGAGCTGATAGTC+CGG | - | chr6.1:3808066-3808085 | MS.gene54691:intron | 55.0% | |
| ! | CATGCCGGAGCCCTTGATTT+TGG | - | chr6.1:3808428-3808447 | MS.gene54691:intron | 55.0% |
| CAGAAGCAGCAGCTGACAGC+AGG | - | chr6.1:3808871-3808890 | MS.gene54691:intron | 60.0% | |
| CCAAGCACCAGAGGTCGGAA+AGG | - | chr6.1:3808136-3808155 | MS.gene54691:intron | 60.0% | |
| CCTTTCCGACCTCTGGTGCT+TGG | + | chr6.1:3808139-3808158 | None:intergenic | 60.0% | |
| GGAGTGATCGACACGCTCCA+AGG | - | chr6.1:3807656-3807675 | MS.gene54691:intron | 60.0% | |
| GGACGACCCCATCGTCCCAA+TGG | + | chr6.1:3808806-3808825 | None:intergenic | 65.0% | |
| GGAGCGATCTACGCGCTCCA+AGG | - | chr6.1:3807857-3807876 | MS.gene54691:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3805824 | 3808903 | 3805824 | ID=MS.gene54691 |
| chr6.1 | mRNA | 3805824 | 3808903 | 3805824 | ID=MS.gene54691.t1;Parent=MS.gene54691 |
| chr6.1 | exon | 3808896 | 3808903 | 3808896 | ID=MS.gene54691.t1.exon1;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3808896 | 3808903 | 3808896 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3808311 | 3808335 | 3808311 | ID=MS.gene54691.t1.exon2;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3808311 | 3808335 | 3808311 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3807178 | 3807312 | 3807178 | ID=MS.gene54691.t1.exon3;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3807178 | 3807312 | 3807178 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3806810 | 3806881 | 3806810 | ID=MS.gene54691.t1.exon4;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3806810 | 3806881 | 3806810 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3806493 | 3806678 | 3806493 | ID=MS.gene54691.t1.exon5;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3806493 | 3806678 | 3806493 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3806278 | 3806371 | 3806278 | ID=MS.gene54691.t1.exon6;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3806278 | 3806371 | 3806278 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3806118 | 3806173 | 3806118 | ID=MS.gene54691.t1.exon7;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3806118 | 3806173 | 3806118 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| chr6.1 | exon | 3805824 | 3806009 | 3805824 | ID=MS.gene54691.t1.exon8;Parent=MS.gene54691.t1 |
| chr6.1 | CDS | 3805824 | 3806009 | 3805824 | ID=cds.MS.gene54691.t1;Parent=MS.gene54691.t1 |
| Gene Sequence |
| Protein sequence |
