AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54707

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54707.t1 MTR_6g008170 94.710 397 21 0 1 397 158 554 0.0 644
MS.gene54707.t1 MTR_3g078340 53.261 368 161 4 36 394 161 526 2.02e-112 339
MS.gene54707.t1 MTR_4g063800 29.167 312 215 3 57 365 329 637 8.14e-33 130
MS.gene54707.t1 MTR_4g485520 27.237 257 182 3 103 357 227 480 5.31e-28 115
MS.gene54707.t1 MTR_1g094215 28.990 307 213 3 58 362 139 442 9.34e-28 114
MS.gene54707.t1 MTR_4g485520 27.237 257 182 3 103 357 395 648 1.11e-27 115
MS.gene54707.t1 MTR_3g466220 28.623 276 193 2 84 358 535 807 1.97e-27 115
MS.gene54707.t1 MTR_3g466220 28.623 276 193 2 84 358 556 828 2.17e-27 114
MS.gene54707.t1 MTR_1g094215 28.990 307 213 3 58 362 322 625 3.83e-27 114
MS.gene54707.t1 MTR_7g097020 27.413 259 180 3 103 358 504 757 2.52e-24 105
MS.gene54707.t1 MTR_7g078330 27.413 259 183 2 103 359 389 644 2.81e-24 105
MS.gene54707.t1 MTR_1g069845 26.198 313 221 4 49 358 293 598 9.31e-24 103
MS.gene54707.t1 MTR_1g069845 26.736 288 203 3 74 358 437 719 1.69e-23 103
MS.gene54707.t1 MTR_1g069845 26.736 288 203 3 74 358 433 715 2.20e-23 102
MS.gene54707.t1 MTR_7g059405 26.877 253 182 1 103 355 383 632 2.31e-23 102
MS.gene54707.t1 MTR_1g018180 23.105 277 208 2 83 357 63 336 5.91e-19 87.8
MS.gene54707.t1 MTR_3g103050 22.388 268 197 4 97 357 67 330 4.98e-16 79.0
MS.gene54707.t1 MTR_7g053260 25.893 224 162 3 132 353 226 447 7.94e-15 76.3
MS.gene54707.t1 MTR_5g083030 28.279 244 150 5 82 323 406 626 9.12e-15 76.6
MS.gene54707.t1 MTR_2g026130 25.418 299 213 3 70 361 159 454 1.70e-14 75.1
MS.gene54707.t1 MTR_7g116600 26.168 214 154 3 142 353 237 448 1.48e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54707.t1 AT5G40140 55.682 352 141 5 55 397 205 550 3.88e-115 347
MS.gene54707.t1 AT5G65200 49.845 323 147 4 76 383 220 542 1.01e-94 294
MS.gene54707.t1 AT5G62560 47.576 330 160 5 78 397 233 559 1.69e-87 276
MS.gene54707.t1 AT3G47820 48.077 312 152 6 75 376 201 512 3.17e-78 251
MS.gene54707.t1 AT2G23140 28.058 278 196 2 82 358 355 629 2.34e-29 120
MS.gene54707.t1 AT2G23140 28.058 278 196 2 82 358 355 629 2.34e-29 120
MS.gene54707.t1 AT2G23140 28.058 278 196 2 82 358 547 821 7.12e-29 119
MS.gene54707.t1 AT2G23140 28.058 278 196 2 82 358 544 818 7.80e-29 119
MS.gene54707.t1 AT2G23140 28.058 278 196 2 82 358 544 818 7.80e-29 119
MS.gene54707.t1 AT3G46510 26.909 275 189 4 103 368 376 647 5.79e-25 107
MS.gene54707.t1 AT2G28830 28.623 276 188 5 82 352 286 557 9.89e-25 106
MS.gene54707.t1 AT3G54850 28.958 259 179 3 103 359 369 624 1.22e-24 106
MS.gene54707.t1 AT1G23030 25.581 258 186 2 103 357 355 609 2.37e-23 102
MS.gene54707.t1 AT5G67340 26.165 279 201 3 80 356 422 697 9.85e-23 100
MS.gene54707.t1 AT5G67340 26.165 279 201 3 80 356 422 697 9.85e-23 100
MS.gene54707.t1 AT1G71020 26.259 278 198 3 84 357 198 472 2.16e-22 99.0
MS.gene54707.t1 AT1G71020 26.259 278 198 3 84 357 346 620 3.78e-22 99.0
MS.gene54707.t1 AT5G42340 28.846 260 178 3 103 359 403 658 2.20e-21 96.7
MS.gene54707.t1 AT3G54790 25.581 258 187 3 103 358 460 714 4.98e-21 95.9
MS.gene54707.t1 AT3G54790 25.581 258 187 3 103 358 496 750 5.89e-21 95.5
MS.gene54707.t1 AT3G54790 25.581 258 187 3 103 358 496 750 5.89e-21 95.5
MS.gene54707.t1 AT3G01400 23.106 264 196 3 97 357 81 340 8.54e-19 87.4
MS.gene54707.t1 AT5G58680 25.283 265 190 4 97 357 79 339 3.79e-17 82.4
MS.gene54707.t1 AT4G16490 25.249 301 213 4 70 361 169 466 3.90e-14 74.3
MS.gene54707.t1 AT4G31890 26.136 264 183 6 103 356 167 428 1.96e-13 72.0
MS.gene54707.t1 AT4G31890 26.136 264 183 6 103 356 167 428 1.96e-13 72.0
MS.gene54707.t1 AT4G31890 26.136 264 183 6 103 356 167 428 1.96e-13 72.0
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 93 317 2.58e-13 70.9
MS.gene54707.t1 AT3G07360 24.229 227 167 3 134 357 228 452 3.50e-13 71.2
MS.gene54707.t1 AT2G25130 25.660 265 184 6 103 356 133 395 2.57e-12 68.6

Find 90 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTAATGTTGGGTAATTT+AGG 0.144924 6.1:-4000144 MS.gene54707:CDS
TGGGAGGAGTTGCTTGATTC+AGG 0.168681 6.1:-3999832 MS.gene54707:CDS
GTTACTATTTCTTCTTCTTC+TGG 0.210667 6.1:+4000696 None:intergenic
TGTTAATGTTGGGTAATTTA+GGG 0.261769 6.1:-4000143 MS.gene54707:CDS
TCATGGCGGGTTGAGGTTTA+AGG 0.264879 6.1:-3999989 MS.gene54707:CDS
CGGTGTTGTGGAGTGTTTGA+TGG 0.278918 6.1:-4000085 MS.gene54707:CDS
TCTTCTTCTGGTGTTGTTGA+AGG 0.309732 6.1:+4000708 None:intergenic
TGTCGTTTCTGTTTGATACT+AGG 0.312491 6.1:+4000895 None:intergenic
GGTCAATGCACTTGCTTCAT+TGG 0.314231 6.1:-4000517 MS.gene54707:CDS
CTTCTACTATAACCAATTCA+TGG 0.333290 6.1:+4000661 None:intergenic
TGAAAAGGTGAGGAGGATAT+TGG 0.347944 6.1:-3999896 MS.gene54707:CDS
TGTCTTTAGTGAGGAGTAAT+CGG 0.350050 6.1:-4000242 MS.gene54707:CDS
GGAAGAGGAGGAAGTGGATT+GGG 0.352883 6.1:-3999851 MS.gene54707:CDS
GAGTTCAACTTTGCACCAAT+AGG 0.356098 6.1:-4000590 MS.gene54707:CDS
TTTGCTTCACGCGCTTAAAT+CGG 0.374055 6.1:-4000310 MS.gene54707:CDS
CTTGGTGTTAACATTGATAT+TGG 0.379077 6.1:+4000855 None:intergenic
TGGAAGAGGAGGAAGTGGAT+TGG 0.382490 6.1:-3999852 MS.gene54707:CDS
AGAGGTGGAAGAGGAGGAAG+TGG 0.384680 6.1:-3999857 MS.gene54707:CDS
ATGTTGGGTAATTTAGGGTT+TGG 0.406947 6.1:-4000138 MS.gene54707:CDS
GGGAGGAGTTGCTTGATTCA+GGG 0.416942 6.1:-3999831 MS.gene54707:CDS
TTTGTTGGGGATGGTTAAGT+CGG 0.428089 6.1:-4000187 MS.gene54707:CDS
AACCCCAACACAACTCTCTC+TGG 0.431543 6.1:+4000026 None:intergenic
AGGGTTTGGATCGGATGGTC+GGG 0.435245 6.1:-4000124 MS.gene54707:CDS
AAAACTCAGAAACCATGAAT+TGG 0.438643 6.1:-4000673 MS.gene54707:CDS
GGTTAAGCTAGGGTTTGTTT+CGG 0.441141 6.1:-4000211 MS.gene54707:CDS
TTCATGTGCGATGTTTAGTT+TGG 0.447699 6.1:-4000385 MS.gene54707:CDS
CATTGAGTCATGGCGGGTTG+AGG 0.451605 6.1:-3999996 MS.gene54707:CDS
CGACCAGAGAGAGTTGTGTT+GGG 0.460168 6.1:-4000029 MS.gene54707:CDS
GGACGGGTCAAGTGTTAAAT+CGG 0.463411 6.1:-3999770 MS.gene54707:CDS
CGGGTTGAGGTTTAAGGCGG+TGG 0.465510 6.1:-3999983 MS.gene54707:CDS
ATGGATTTATTGTGTGGGAC+CGG 0.467229 6.1:-4000066 MS.gene54707:CDS
AGTTCAACTTTGCACCAATA+GGG 0.470052 6.1:-4000589 MS.gene54707:CDS
GTCTTTAGTGAGGAGTAATC+GGG 0.470251 6.1:-4000241 MS.gene54707:CDS
CAAAGAACATAGTACCCTAT+TGG 0.475960 6.1:+4000575 None:intergenic
GACGCGCCATGACTCAGGTT+TGG 0.483873 6.1:-4000277 MS.gene54707:CDS
TAGGGTTTGGATCGGATGGT+CGG 0.485284 6.1:-4000125 MS.gene54707:CDS
TGTGGAAATGTTGCAAAAGA+TGG 0.488035 6.1:-3999944 MS.gene54707:CDS
GGATGGTCGGGCTGCTATGT+TGG 0.488457 6.1:-4000112 MS.gene54707:CDS
GAGGTTTAAGGCGGTGGCGA+AGG 0.489134 6.1:-3999977 MS.gene54707:CDS
TGTTTGATGGATTTATTGTG+TGG 0.493639 6.1:-4000072 MS.gene54707:CDS
GAGGAGTAATCGGGCTAAGA+TGG 0.497030 6.1:-4000232 MS.gene54707:CDS
GGCGAAGGAGGTTGGAGTTG+TGG 0.503945 6.1:-3999962 MS.gene54707:CDS
CGGGCTAAGATGGTTAAGCT+AGG 0.507277 6.1:-4000222 MS.gene54707:CDS
GTTTGGATCGTGTGAATCGC+AGG 0.509854 6.1:-4000415 MS.gene54707:CDS
AACCTCAAAATCTCGATCAA+TGG 0.512851 6.1:+4000435 None:intergenic
AGAGGAGGAAGTGGATTGGG+AGG 0.513596 6.1:-3999848 MS.gene54707:CDS
GGTTAAGTCGGGTCATATGA+TGG 0.515701 6.1:-4000175 MS.gene54707:CDS
TTAACAAAGTGAAGATAGTC+CGG 0.515994 6.1:-4000473 MS.gene54707:CDS
GAATTGGTTATAGTAGAAGA+AGG 0.516593 6.1:-4000657 MS.gene54707:CDS
GATTTAAGCGCGTGAAGCAA+AGG 0.517203 6.1:+4000312 None:intergenic
TTTGTCATTTGTCTTTAGTG+AGG 0.523905 6.1:-4000251 MS.gene54707:CDS
TGGATTTATTGTGTGGGACC+GGG 0.524333 6.1:-4000065 MS.gene54707:CDS
GAAAAGACGCGCCATGACTC+AGG 0.531395 6.1:-4000282 MS.gene54707:CDS
AAGGCGGTGGCGAAGGAGGT+TGG 0.532422 6.1:-3999970 MS.gene54707:CDS
GAGCGAGAAGGCTAATGAAA+AGG 0.536039 6.1:-3999911 MS.gene54707:CDS
TCGACCAGAGAGAGTTGTGT+TGG 0.536889 6.1:-4000030 MS.gene54707:CDS
TTGTTGGGGATGGTTAAGTC+GGG 0.538225 6.1:-4000186 MS.gene54707:CDS
GGGTAATTTAGGGTTTGGAT+CGG 0.538407 6.1:-4000133 MS.gene54707:CDS
TGTTAACTTTCTCAAGTGAA+AGG 0.538590 6.1:+4000490 None:intergenic
CTCAAAATCTCGATCAATGG+TGG 0.538923 6.1:+4000438 None:intergenic
TTTATTGTGTGGGACCGGGT+TGG 0.548105 6.1:-4000061 MS.gene54707:CDS
AAAGTGAAGATAGTCCGGTC+AGG 0.548857 6.1:-4000468 MS.gene54707:CDS
AATTTAGGGTTTGGATCGGA+TGG 0.549330 6.1:-4000129 MS.gene54707:CDS
GTTTGATGGATTTATTGTGT+GGG 0.554582 6.1:-4000071 MS.gene54707:CDS
CGACTTAACAGTGGATTGGA+CGG 0.560410 6.1:-3999787 MS.gene54707:CDS
TTGCTTGATTCAGGGTTCAG+TGG 0.566963 6.1:-3999823 MS.gene54707:CDS
GATGATAATAAAACTGCGAT+TGG 0.572462 6.1:-4000354 MS.gene54707:CDS
AAAGGTGAGGAGGATATTGG+AGG 0.573257 6.1:-3999893 MS.gene54707:CDS
GAGTCGACTTAACAGTGGAT+TGG 0.574299 6.1:-3999791 MS.gene54707:CDS
GTTTAAGGCGGTGGCGAAGG+AGG 0.574627 6.1:-3999974 MS.gene54707:CDS
TTCCTCTGAGCTTGAGTACG+AGG 0.578202 6.1:+4000827 None:intergenic
GACCAGAGAGAGTTGTGTTG+GGG 0.581160 6.1:-4000028 MS.gene54707:CDS
AGGCTAATGAAAAGGTGAGG+AGG 0.581449 6.1:-3999903 MS.gene54707:CDS
CGGGCTGCTATGTTGGATGT+CGG 0.582096 6.1:-4000105 MS.gene54707:CDS
GGGCTAAGATGGTTAAGCTA+GGG 0.583294 6.1:-4000221 MS.gene54707:CDS
TAACAGAAACTTTGAAGCTG+TGG 0.590142 6.1:+4000759 None:intergenic
GGTTCAAGTTCAGATGAAGA+AGG 0.600403 6.1:+4000729 None:intergenic
GACTTAACAGTGGATTGGAC+GGG 0.605958 6.1:-3999786 MS.gene54707:CDS
TGTATGCATTGAGTCATGGC+GGG 0.611163 6.1:-4000002 MS.gene54707:CDS
AAAGTGCCAAACCTGAGTCA+TGG 0.613449 6.1:+4000271 None:intergenic
ATGGTGGAACAATTCCTGAC+CGG 0.620028 6.1:+4000454 None:intergenic
CAGAAACTTTGAAGCTGTGG+TGG 0.634080 6.1:+4000762 None:intergenic
TTGTATGCATTGAGTCATGG+CGG 0.636106 6.1:-4000003 MS.gene54707:CDS
GGAGAAAATGAAGAGCGAGA+AGG 0.651983 6.1:-3999923 MS.gene54707:CDS
GGTCGACTCAGACTCCAACC+CGG 0.654131 6.1:+4000047 None:intergenic
TGGCGGGTTGAGGTTTAAGG+CGG 0.677131 6.1:-3999986 MS.gene54707:CDS
AGAAGGCTAATGAAAAGGTG+AGG 0.679571 6.1:-3999906 MS.gene54707:CDS
TATGTTGGATGTCGGTGTTG+TGG 0.690455 6.1:-4000097 MS.gene54707:CDS
ACTATGAGTCGACTTAACAG+TGG 0.702437 6.1:-3999796 MS.gene54707:CDS
AACCTCGTACTCAAGCTCAG+AGG 0.703022 6.1:-4000829 MS.gene54707:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAATCACAAGAACGAATT+TGG - chr6.1:4000070-4000089 MS.gene54707:CDS 25.0%
! TGTTAATGTTGGGTAATTTA+GGG - chr6.1:4000546-4000565 MS.gene54707:CDS 25.0%
! TTGTTAATGTTGGGTAATTT+AGG - chr6.1:4000545-4000564 MS.gene54707:CDS 25.0%
! TTTGATTGTGTCTAAAAATG+AGG - chr6.1:4000142-4000161 MS.gene54707:CDS 25.0%
!!! GATCAAGTTTTGTTAATGTT+GGG - chr6.1:4000536-4000555 MS.gene54707:CDS 25.0%
AAAACTCAGAAACCATGAAT+TGG - chr6.1:4000016-4000035 MS.gene54707:CDS 30.0%
CTTCTACTATAACCAATTCA+TGG + chr6.1:4000031-4000050 None:intergenic 30.0%
GAATTGGTTATAGTAGAAGA+AGG - chr6.1:4000032-4000051 MS.gene54707:CDS 30.0%
GATGATAATAAAACTGCGAT+TGG - chr6.1:4000335-4000354 MS.gene54707:CDS 30.0%
TGTTAACTTTCTCAAGTGAA+AGG + chr6.1:4000202-4000221 None:intergenic 30.0%
TTAACAAAGTGAAGATAGTC+CGG - chr6.1:4000216-4000235 MS.gene54707:CDS 30.0%
! GTTACTATTTCTTCTTCTTC+TGG + chr6.1:3999996-4000015 None:intergenic 30.0%
! TTTGTCATTTGTCTTTAGTG+AGG - chr6.1:4000438-4000457 MS.gene54707:CDS 30.0%
!! CTTGGTGTTAACATTGATAT+TGG + chr6.1:3999837-3999856 None:intergenic 30.0%
!! GTTTGATGGATTTATTGTGT+GGG - chr6.1:4000618-4000637 MS.gene54707:CDS 30.0%
!! TGTTTGATGGATTTATTGTG+TGG - chr6.1:4000617-4000636 MS.gene54707:CDS 30.0%
!!! GGATCAAGTTTTGTTAATGT+TGG - chr6.1:4000535-4000554 MS.gene54707:CDS 30.0%
AACCTCAAAATCTCGATCAA+TGG + chr6.1:4000257-4000276 None:intergenic 35.0%
AGTTCAACTTTGCACCAATA+GGG - chr6.1:4000100-4000119 MS.gene54707:CDS 35.0%
CAAAGAACATAGTACCCTAT+TGG + chr6.1:4000117-4000136 None:intergenic 35.0%
GATTGTGTCTAAAAATGAGG+TGG - chr6.1:4000145-4000164 MS.gene54707:CDS 35.0%
GTCTAAAAATGAGGTGGTAA+AGG - chr6.1:4000151-4000170 MS.gene54707:CDS 35.0%
TGTCTTTAGTGAGGAGTAAT+CGG - chr6.1:4000447-4000466 MS.gene54707:CDS 35.0%
TGTGGAAATGTTGCAAAAGA+TGG - chr6.1:4000745-4000764 MS.gene54707:CDS 35.0%
TTCATGTGCGATGTTTAGTT+TGG - chr6.1:4000304-4000323 MS.gene54707:CDS 35.0%
! ATGTTGGGTAATTTAGGGTT+TGG - chr6.1:4000551-4000570 MS.gene54707:CDS 35.0%
! GTTTTGTATGCATTGAGTCA+TGG - chr6.1:4000683-4000702 MS.gene54707:CDS 35.0%
! TGTCGTTTCTGTTTGATACT+AGG + chr6.1:3999797-3999816 None:intergenic 35.0%
!! AAAACTGCGATTGGTGTTTT+AGG - chr6.1:4000344-4000363 MS.gene54707:CDS 35.0%
!! TAACAGAAACTTTGAAGCTG+TGG + chr6.1:3999933-3999952 None:intergenic 35.0%
!!! TTGATCGAGATTTTGAGGTT+TGG - chr6.1:4000257-4000276 MS.gene54707:CDS 35.0%
AGAAGGCTAATGAAAAGGTG+AGG - chr6.1:4000783-4000802 MS.gene54707:CDS 40.0%
ATGGATTTATTGTGTGGGAC+CGG - chr6.1:4000623-4000642 MS.gene54707:CDS 40.0%
CTCAAAATCTCGATCAATGG+TGG + chr6.1:4000254-4000273 None:intergenic 40.0%
GAGTTCAACTTTGCACCAAT+AGG - chr6.1:4000099-4000118 MS.gene54707:CDS 40.0%
GTCTTTAGTGAGGAGTAATC+GGG - chr6.1:4000448-4000467 MS.gene54707:CDS 40.0%
TGAAAAGGTGAGGAGGATAT+TGG - chr6.1:4000793-4000812 MS.gene54707:CDS 40.0%
TTGTATGCATTGAGTCATGG+CGG - chr6.1:4000686-4000705 MS.gene54707:CDS 40.0%
TTTGCTTCACGCGCTTAAAT+CGG - chr6.1:4000379-4000398 MS.gene54707:CDS 40.0%
TTTGTTGGGGATGGTTAAGT+CGG - chr6.1:4000502-4000521 MS.gene54707:CDS 40.0%
! AATTTAGGGTTTGGATCGGA+TGG - chr6.1:4000560-4000579 MS.gene54707:CDS 40.0%
! ACTATGAGTCGACTTAACAG+TGG - chr6.1:4000893-4000912 MS.gene54707:CDS 40.0%
! CACCATTGATCGAGATTTTG+AGG - chr6.1:4000252-4000271 MS.gene54707:CDS 40.0%
! CTTGAGTACGAGGTTTTTCT+TGG + chr6.1:3999855-3999874 None:intergenic 40.0%
! GGGTAATTTAGGGTTTGGAT+CGG - chr6.1:4000556-4000575 MS.gene54707:CDS 40.0%
! GGTTAAGCTAGGGTTTGTTT+CGG - chr6.1:4000478-4000497 MS.gene54707:CDS 40.0%
! GGTTCAAGTTCAGATGAAGA+AGG + chr6.1:3999963-3999982 None:intergenic 40.0%
!! AGGGTTTGTTTCGGTTTTGT+TGG - chr6.1:4000487-4000506 MS.gene54707:CDS 40.0%
!! TCTTCTTCTGGTGTTGTTGA+AGG + chr6.1:3999984-4000003 None:intergenic 40.0%
!!! GGGTTTGTTTCGGTTTTGTT+GGG - chr6.1:4000488-4000507 MS.gene54707:CDS 40.0%
!!! GGTTTGTTTCGGTTTTGTTG+GGG - chr6.1:4000489-4000508 MS.gene54707:CDS 40.0%
AAAGGTGAGGAGGATATTGG+AGG - chr6.1:4000796-4000815 MS.gene54707:CDS 45.0%
AAAGTGAAGATAGTCCGGTC+AGG - chr6.1:4000221-4000240 MS.gene54707:CDS 45.0%
AGAAAAAGAGGTGGAAGAGG+AGG - chr6.1:4000826-4000845 MS.gene54707:CDS 45.0%
AGGCTAATGAAAAGGTGAGG+AGG - chr6.1:4000786-4000805 MS.gene54707:CDS 45.0%
GAGCGAGAAGGCTAATGAAA+AGG - chr6.1:4000778-4000797 MS.gene54707:CDS 45.0%
GATTTAAGCGCGTGAAGCAA+AGG + chr6.1:4000380-4000399 None:intergenic 45.0%
GGACGGGTCAAGTGTTAAAT+CGG - chr6.1:4000919-4000938 MS.gene54707:CDS 45.0%
GGAGAAAATGAAGAGCGAGA+AGG - chr6.1:4000766-4000785 MS.gene54707:CDS 45.0%
GGGCTAAGATGGTTAAGCTA+GGG - chr6.1:4000468-4000487 MS.gene54707:CDS 45.0%
GGTCAATGCACTTGCTTCAT+TGG - chr6.1:4000172-4000191 MS.gene54707:CDS 45.0%
GGTTAAGTCGGGTCATATGA+TGG - chr6.1:4000514-4000533 MS.gene54707:CDS 45.0%
TGGATTTATTGTGTGGGACC+GGG - chr6.1:4000624-4000643 MS.gene54707:CDS 45.0%
TGTATGCATTGAGTCATGGC+GGG - chr6.1:4000687-4000706 MS.gene54707:CDS 45.0%
TTGCTTGATTCAGGGTTCAG+TGG - chr6.1:4000866-4000885 MS.gene54707:CDS 45.0%
TTGTTGGGGATGGTTAAGTC+GGG - chr6.1:4000503-4000522 MS.gene54707:CDS 45.0%
! AAAGTGCCAAACCTGAGTCA+TGG + chr6.1:4000421-4000440 None:intergenic 45.0%
! ATGGTGGAACAATTCCTGAC+CGG + chr6.1:4000238-4000257 None:intergenic 45.0%
! GAGTCGACTTAACAGTGGAT+TGG - chr6.1:4000898-4000917 MS.gene54707:CDS 45.0%
!! CAGAAACTTTGAAGCTGTGG+TGG + chr6.1:3999930-3999949 None:intergenic 45.0%
!! CGACTTAACAGTGGATTGGA+CGG - chr6.1:4000902-4000921 MS.gene54707:CDS 45.0%
!! GACTTAACAGTGGATTGGAC+GGG - chr6.1:4000903-4000922 MS.gene54707:CDS 45.0%
!! TATGTTGGATGTCGGTGTTG+TGG - chr6.1:4000592-4000611 MS.gene54707:CDS 45.0%
!!! TGTTTCGGTTTTGTTGGGGA+TGG - chr6.1:4000493-4000512 MS.gene54707:CDS 45.0%
AACCCCAACACAACTCTCTC+TGG + chr6.1:4000666-4000685 None:intergenic 50.0%
AACCTCGTACTCAAGCTCAG+AGG - chr6.1:3999860-3999879 MS.gene54707:CDS 50.0%
CGACCAGAGAGAGTTGTGTT+GGG - chr6.1:4000660-4000679 MS.gene54707:CDS 50.0%
CGGGCTAAGATGGTTAAGCT+AGG - chr6.1:4000467-4000486 MS.gene54707:CDS 50.0%
GACCAGAGAGAGTTGTGTTG+GGG - chr6.1:4000661-4000680 MS.gene54707:CDS 50.0%
GAGGAGTAATCGGGCTAAGA+TGG - chr6.1:4000457-4000476 MS.gene54707:CDS 50.0%
GCGAGAAAAAGAGGTGGAAG+AGG - chr6.1:4000823-4000842 MS.gene54707:CDS 50.0%
GGAGGTGATGCGAGAAAAAG+AGG - chr6.1:4000814-4000833 MS.gene54707:CDS 50.0%
GGGAGGAGTTGCTTGATTCA+GGG - chr6.1:4000858-4000877 MS.gene54707:CDS 50.0%
GGTGATGCGAGAAAAAGAGG+TGG - chr6.1:4000817-4000836 MS.gene54707:CDS 50.0%
GTTTGGATCGTGTGAATCGC+AGG - chr6.1:4000274-4000293 MS.gene54707:CDS 50.0%
TAGGGTTTGGATCGGATGGT+CGG - chr6.1:4000564-4000583 MS.gene54707:CDS 50.0%
TCGACCAGAGAGAGTTGTGT+TGG - chr6.1:4000659-4000678 MS.gene54707:CDS 50.0%
TGGAAGAGGAGGAAGTGGAT+TGG - chr6.1:4000837-4000856 MS.gene54707:CDS 50.0%
TGGGAGGAGTTGCTTGATTC+AGG - chr6.1:4000857-4000876 MS.gene54707:CDS 50.0%
TTCCTCTGAGCTTGAGTACG+AGG + chr6.1:3999865-3999884 None:intergenic 50.0%
TTTATTGTGTGGGACCGGGT+TGG - chr6.1:4000628-4000647 MS.gene54707:CDS 50.0%
! GGAAGAGGAGGAAGTGGATT+GGG - chr6.1:4000838-4000857 MS.gene54707:CDS 50.0%
!! CGGTGTTGTGGAGTGTTTGA+TGG - chr6.1:4000604-4000623 MS.gene54707:CDS 50.0%
!! TCATGGCGGGTTGAGGTTTA+AGG - chr6.1:4000700-4000719 MS.gene54707:CDS 50.0%
AGAGGTGGAAGAGGAGGAAG+TGG - chr6.1:4000832-4000851 MS.gene54707:CDS 55.0%
AGGGTTTGGATCGGATGGTC+GGG - chr6.1:4000565-4000584 MS.gene54707:CDS 55.0%
CGGGCTGCTATGTTGGATGT+CGG - chr6.1:4000584-4000603 MS.gene54707:CDS 55.0%
GAAAAGACGCGCCATGACTC+AGG - chr6.1:4000407-4000426 MS.gene54707:CDS 55.0%
!! AGAGGAGGAAGTGGATTGGG+AGG - chr6.1:4000841-4000860 MS.gene54707:CDS 55.0%
!! CATTGAGTCATGGCGGGTTG+AGG - chr6.1:4000693-4000712 MS.gene54707:CDS 55.0%
!! TGGCGGGTTGAGGTTTAAGG+CGG - chr6.1:4000703-4000722 MS.gene54707:CDS 55.0%
GACGCGCCATGACTCAGGTT+TGG - chr6.1:4000412-4000431 MS.gene54707:CDS 60.0%
GGATGGTCGGGCTGCTATGT+TGG - chr6.1:4000577-4000596 MS.gene54707:CDS 60.0%
GGCGAAGGAGGTTGGAGTTG+TGG - chr6.1:4000727-4000746 MS.gene54707:CDS 60.0%
! CGGGTTGAGGTTTAAGGCGG+TGG - chr6.1:4000706-4000725 MS.gene54707:CDS 60.0%
! GAGGTTTAAGGCGGTGGCGA+AGG - chr6.1:4000712-4000731 MS.gene54707:CDS 60.0%
! GGTCGACTCAGACTCCAACC+CGG + chr6.1:4000645-4000664 None:intergenic 60.0%
! GTTTAAGGCGGTGGCGAAGG+AGG - chr6.1:4000715-4000734 MS.gene54707:CDS 60.0%
AAGGCGGTGGCGAAGGAGGT+TGG - chr6.1:4000719-4000738 MS.gene54707:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 3999759 4000952 3999759 ID=MS.gene54707
chr6.1 mRNA 3999759 4000952 3999759 ID=MS.gene54707.t1;Parent=MS.gene54707
chr6.1 exon 3999759 4000952 3999759 ID=MS.gene54707.t1.exon1;Parent=MS.gene54707.t1
chr6.1 CDS 3999759 4000952 3999759 ID=cds.MS.gene54707.t1;Parent=MS.gene54707.t1
Gene Sequence

>MS.gene54707

ATGTCTTCAAAACAACATCAACATAATCAAAACAACCTAGTATCAAACAGAAACGACAAAGAAGAAGAAACACGACCAATATCAATGTTAACACCAAGAAAAACCTCGTACTCAAGCTCAGAGGAATCTATAGCTACTGTCACGTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAACTTGAACCTTCAACAACACCAGAAGAAGAAGAAATAGTAACAAAACTCAGAAACCATGAATTGGTTATAGTAGAAGAAGGTTTAATCTCACTCAGAAAAATCACAAGAACGAATTTGGAAAGTAGAGTTCAACTTTGCACCAATAGGGTACTATGTTCTTTGCGTTATTTGATTGTGTCTAAAAATGAGGTGGTAAAGGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTTAACAAAGTGAAGATAGTCCGGTCAGGAATTGTTCCACCATTGATCGAGATTTTGAGGTTTGGATCGTGTGAATCGCAGGAACATGCTTCATGTGCGATGTTTAGTTTGGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCTTTGCTTCACGCGCTTAAATCGGAAAGTGAAAAGACGCGCCATGACTCAGGTTTGGCACTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGGTTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTAATGTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGTCGGTGTTGTGGAGTGTTTGATGGATTTATTGTGTGGGACCGGGTTGGAGTCTGAGTCGACCAGAGAGAGTTGTGTTGGGGTTTTGTATGCATTGAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTGAGGAGGATATTGGAGGTGATGCGAGAAAAAGAGGTGGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGATTCAGGGTTCAGTGGTCGAACTATGAGTCGACTTAACAGTGGATTGGACGGGTCAAGTGTTAAATCGGATGAGCTGTGA
Protein sequence

>MS.gene54707.t1

MSSKQHQHNQNNLVSNRNDKEEETRPISMLTPRKTSYSSSEESIATVTSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNHELVIVEEGLISLRKITRTNLESRVQLCTNRVLCSLRYLIVSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEILRFGSCESQEHASCAMFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSGLALCHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMDQVLLMLGNLGFGSDGRAAMLDVGVVECLMDLLCGTGLESESTRESCVGVLYALSHGGLRFKAVAKEVGVVEMLQKMEKMKSEKANEKVRRILEVMREKEVEEEEVDWEELLDSGFSGRTMSRLNSGLDGSSVKSDEL