AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54779

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54779.t1 MTR_1g095510 98.438 192 3 0 1 192 1 192 5.30e-143 395
MS.gene54779.t1 MTR_1g095510 88.021 192 3 1 1 192 1 172 2.45e-122 343
MS.gene54779.t1 MTR_1g095510 97.826 138 3 0 55 192 1 138 6.61e-102 290
MS.gene54779.t1 MTR_4g076200 65.644 163 55 1 27 189 18 179 3.33e-74 221
MS.gene54779.t1 MTR_5g009020 63.095 168 61 1 15 182 6 172 3.00e-73 219
MS.gene54779.t1 MTR_4g076200 67.626 139 44 1 51 189 1 138 3.63e-65 197
MS.gene54779.t1 MTR_1g021150 44.030 134 73 2 43 175 3 135 3.58e-33 116
MS.gene54779.t1 MTR_4g073240 46.400 125 66 1 43 167 3 126 1.15e-32 114
MS.gene54779.t1 MTR_4g108080 41.958 143 81 2 39 180 2 143 1.84e-32 114
MS.gene54779.t1 MTR_3g062450 44.882 127 69 1 43 169 3 128 7.09e-32 112
MS.gene54779.t1 MTR_5g075580 44.882 127 69 1 43 169 3 128 7.33e-32 112
MS.gene54779.t1 MTR_8g468530 41.259 143 82 2 39 180 18 159 9.06e-32 113
MS.gene54779.t1 MTR_2g078010 43.609 133 74 1 40 172 4 135 1.46e-31 112
MS.gene54779.t1 MTR_2g078010 42.857 133 75 1 40 172 4 135 1.70e-31 112
MS.gene54779.t1 MTR_7g116940 44.094 127 70 1 43 169 3 128 1.92e-31 111
MS.gene54779.t1 MTR_8g071040 41.791 134 76 2 43 175 3 135 2.28e-30 108
MS.gene54779.t1 MTR_1g021150 45.946 111 59 1 66 175 33 143 4.02e-30 108
MS.gene54779.t1 MTR_4g073240 48.454 97 50 0 71 167 1 97 1.58e-28 103
MS.gene54779.t1 MTR_5g075580 47.959 98 51 0 71 168 1 98 1.67e-28 103
MS.gene54779.t1 MTR_7g116940 41.791 134 70 2 43 169 3 135 2.56e-28 103
MS.gene54779.t1 MTR_3g098780 36.774 155 90 3 31 179 11 163 3.67e-28 105
MS.gene54779.t1 MTR_3g098780 38.235 136 81 2 45 179 6 139 5.54e-28 104
MS.gene54779.t1 MTR_2g078010 38.776 147 75 2 40 172 4 149 1.19e-27 102
MS.gene54779.t1 MTR_8g085690 44.262 122 64 2 37 155 15 135 4.39e-27 101
MS.gene54779.t1 MTR_4g108080 48.980 98 49 1 84 180 46 143 8.05e-26 97.4
MS.gene54779.t1 MTR_7g116940 42.727 110 62 1 43 152 3 111 2.84e-25 95.5
MS.gene54779.t1 MTR_4g108080 48.864 88 45 0 61 148 23 110 1.51e-24 93.2
MS.gene54779.t1 MTR_3g110110 40.952 105 61 1 58 161 21 125 9.03e-24 92.4
MS.gene54779.t1 MTR_2g078010 43.396 106 59 1 40 145 4 108 1.83e-23 90.1
MS.gene54779.t1 MTR_2g096690 39.062 128 64 2 67 180 30 157 4.95e-23 90.5
MS.gene54779.t1 MTR_4g063490 37.500 128 66 2 67 180 30 157 5.81e-23 90.5
MS.gene54779.t1 MTR_2g096690 38.583 127 65 1 67 180 30 156 9.07e-23 90.1
MS.gene54779.t1 MTR_5g016630 39.167 120 69 3 66 181 32 151 1.76e-20 84.0
MS.gene54779.t1 MTR_4g094872 39.130 115 67 2 70 181 37 151 4.39e-20 82.8
MS.gene54779.t1 MTR_4g106690 35.616 146 86 6 40 182 2 142 1.37e-18 79.7
MS.gene54779.t1 MTR_7g087590 30.921 152 101 3 41 191 10 158 2.18e-18 80.9
MS.gene54779.t1 MTR_8g028920 36.154 130 77 4 40 167 2 127 2.99e-18 78.6
MS.gene54779.t1 MTR_5g019480 33.962 106 70 0 65 170 54 159 3.49e-17 75.9
MS.gene54779.t1 MTR_5g019480 33.962 106 70 0 65 170 51 156 3.61e-17 75.9
MS.gene54779.t1 MTR_5g019480 33.962 106 70 0 65 170 3 108 4.08e-17 74.3
MS.gene54779.t1 MTR_8g076490 40.404 99 50 3 43 137 17 110 4.42e-15 69.7
MS.gene54779.t1 MTR_8g098595 35.870 92 57 2 78 167 21 112 1.02e-14 68.9
MS.gene54779.t1 MTR_8g028920 35.644 101 61 4 85 182 4 103 5.49e-14 66.6
MS.gene54779.t1 MTR_4g073240 55.556 54 24 0 107 160 4 57 6.43e-14 64.7
MS.gene54779.t1 MTR_5g021260 39.175 97 50 3 45 137 19 110 9.62e-14 66.2
MS.gene54779.t1 MTR_2g096690 46.154 65 35 0 67 131 30 94 6.80e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54779.t1 AT3G20060 66.438 146 48 1 37 182 32 176 6.96e-69 208
MS.gene54779.t1 AT1G50490 61.404 171 61 2 12 182 10 175 1.44e-63 194
MS.gene54779.t1 AT3G20060 67.424 132 42 1 51 182 1 131 3.68e-63 192
MS.gene54779.t1 AT2G16740 44.853 136 73 2 43 177 3 137 2.61e-34 119
MS.gene54779.t1 AT1G14400 42.254 142 80 2 39 179 2 142 1.07e-32 115
MS.gene54779.t1 AT1G14400 42.254 142 80 2 39 179 2 142 1.07e-32 115
MS.gene54779.t1 AT2G02760 41.958 143 81 2 39 180 2 143 1.46e-32 114
MS.gene54779.t1 AT2G02760 41.958 143 81 2 39 180 2 143 1.46e-32 114
MS.gene54779.t1 AT2G02760 41.958 143 81 2 39 180 2 143 1.46e-32 114
MS.gene54779.t1 AT2G02760 41.958 143 81 2 39 180 2 143 1.46e-32 114
MS.gene54779.t1 AT4G27960 41.497 147 81 2 43 185 3 148 4.37e-32 113
MS.gene54779.t1 AT1G16890 41.844 141 74 1 40 172 4 144 4.58e-32 114
MS.gene54779.t1 AT5G41700 43.307 127 72 0 43 169 3 129 5.96e-32 113
MS.gene54779.t1 AT1G16890 43.609 133 74 1 40 172 4 135 6.05e-32 113
MS.gene54779.t1 AT1G64230 44.882 127 69 1 43 169 3 128 7.27e-32 112
MS.gene54779.t1 AT1G64230 44.882 127 69 1 43 169 3 128 7.27e-32 112
MS.gene54779.t1 AT5G53300 41.497 147 81 2 43 185 3 148 9.63e-32 112
MS.gene54779.t1 AT5G53300 41.497 147 81 2 43 185 3 148 9.63e-32 112
MS.gene54779.t1 AT5G53300 41.497 147 81 2 43 185 3 148 9.63e-32 112
MS.gene54779.t1 AT5G62540 43.262 141 78 2 39 178 2 141 1.11e-31 112
MS.gene54779.t1 AT5G56150 42.857 126 71 1 43 168 3 127 1.22e-31 112
MS.gene54779.t1 AT1G78870 43.609 133 74 1 40 172 4 135 2.10e-31 112
MS.gene54779.t1 AT5G41700 44.094 127 70 1 43 169 3 128 2.41e-31 111
MS.gene54779.t1 AT5G41700 44.094 127 70 1 43 169 3 128 2.41e-31 111
MS.gene54779.t1 AT5G41700 44.094 127 70 1 43 169 3 128 2.41e-31 111
MS.gene54779.t1 AT3G08690 44.444 126 69 1 43 168 3 127 3.00e-31 111
MS.gene54779.t1 AT3G08690 44.444 126 69 1 43 168 3 127 3.00e-31 111
MS.gene54779.t1 AT4G27960 41.497 147 81 2 43 185 33 178 9.24e-31 110
MS.gene54779.t1 AT1G64230 42.336 137 67 2 43 169 3 137 1.57e-30 109
MS.gene54779.t1 AT1G64230 47.115 104 55 0 66 169 67 170 1.74e-29 108
MS.gene54779.t1 AT1G64230 47.115 104 55 0 66 169 67 170 1.74e-29 108
MS.gene54779.t1 AT5G50870 41.600 125 72 1 45 168 6 130 6.73e-29 106
MS.gene54779.t1 AT3G08700 42.143 140 78 3 43 180 3 141 7.84e-29 105
MS.gene54779.t1 AT3G08700 42.143 140 78 3 43 180 3 141 7.84e-29 105
MS.gene54779.t1 AT5G50870 42.276 123 70 1 45 166 6 128 8.95e-29 106
MS.gene54779.t1 AT1G16890 50.526 95 47 0 78 172 8 102 2.00e-28 103
MS.gene54779.t1 AT1G78870 50.526 95 47 0 78 172 8 102 2.02e-28 103
MS.gene54779.t1 AT1G78870 50.000 96 47 1 78 172 8 103 5.61e-27 99.8
MS.gene54779.t1 AT3G13550 40.876 137 76 3 40 172 32 167 1.64e-26 100
MS.gene54779.t1 AT1G36340 42.017 119 67 1 42 160 9 125 2.97e-26 98.6
MS.gene54779.t1 AT1G36340 42.017 119 67 1 42 160 9 125 2.97e-26 98.6
MS.gene54779.t1 AT3G13550 42.373 118 64 2 40 154 32 148 6.43e-25 95.9
MS.gene54779.t1 AT5G41700 43.396 106 59 1 43 148 3 107 1.08e-24 94.4
MS.gene54779.t1 AT5G25760 42.857 105 59 1 58 161 21 125 1.78e-24 94.4
MS.gene54779.t1 AT5G25760 42.857 105 59 1 58 161 21 125 1.78e-24 94.4
MS.gene54779.t1 AT5G56150 44.211 95 52 1 43 137 3 96 2.14e-24 92.4
MS.gene54779.t1 AT5G53300 46.316 95 50 1 43 137 3 96 3.62e-24 92.0
MS.gene54779.t1 AT1G78870 42.727 110 62 1 40 149 4 112 1.19e-23 90.9
MS.gene54779.t1 AT5G59300 39.062 128 64 2 67 180 30 157 4.23e-23 90.9
MS.gene54779.t1 AT3G46460 38.281 128 65 2 67 180 30 157 8.66e-22 87.4
MS.gene54779.t1 AT3G55380 35.156 128 69 2 67 180 31 158 3.58e-21 85.9
MS.gene54779.t1 AT1G63800 38.462 130 74 4 40 167 2 127 3.32e-19 81.3
MS.gene54779.t1 AT3G57870 38.017 121 69 3 70 184 38 158 2.79e-18 78.2
MS.gene54779.t1 AT5G41340 36.923 130 76 4 40 167 2 127 3.23e-18 78.6
MS.gene54779.t1 AT2G32790 39.344 122 73 1 63 183 51 172 3.82e-18 78.2
MS.gene54779.t1 AT2G18600 32.540 126 82 3 64 187 52 176 7.98e-18 77.4
MS.gene54779.t1 AT2G18600 32.540 126 82 3 64 187 52 176 7.98e-18 77.4
MS.gene54779.t1 AT5G05080 33.835 133 87 1 41 173 10 141 1.20e-17 78.6
MS.gene54779.t1 AT5G05080 33.835 133 87 1 41 173 10 141 1.20e-17 78.6
MS.gene54779.t1 AT5G05080 33.835 133 87 1 41 173 10 141 1.20e-17 78.6
MS.gene54779.t1 AT5G05080 33.835 133 87 1 41 173 10 141 1.20e-17 78.6
MS.gene54779.t1 AT3G24515 37.594 133 67 5 37 155 2 132 8.68e-17 77.8
MS.gene54779.t1 AT4G36800 33.333 108 70 2 64 170 51 157 9.49e-17 74.7
MS.gene54779.t1 AT4G36800 33.333 108 70 2 64 170 51 157 9.49e-17 74.7
MS.gene54779.t1 AT2G46030 35.385 130 78 4 40 167 2 127 3.94e-16 73.2
MS.gene54779.t1 AT2G46030 35.385 130 78 4 40 167 2 127 3.94e-16 73.2
MS.gene54779.t1 AT3G46460 36.111 108 55 2 87 180 8 115 5.96e-16 71.2
MS.gene54779.t1 AT3G46460 36.111 108 55 2 87 180 8 115 5.96e-16 71.2
MS.gene54779.t1 AT2G46030 34.507 142 79 5 28 167 70 199 1.41e-15 72.8
MS.gene54779.t1 AT1G63800 37.931 116 66 4 54 167 1 112 2.39e-15 70.9
MS.gene54779.t1 AT3G55380 29.012 162 67 4 67 180 31 192 2.65e-15 71.2
MS.gene54779.t1 AT3G24515 38.889 90 51 1 70 155 68 157 8.06e-15 72.0
MS.gene54779.t1 AT4G36410 38.835 103 54 3 39 137 13 110 1.00e-14 68.9
MS.gene54779.t1 AT1G75440 39.394 99 51 3 43 137 17 110 7.77e-14 66.6
MS.gene54779.t1 AT5G41340 39.286 84 49 2 86 167 9 92 1.15e-13 65.9
MS.gene54779.t1 AT5G42990 38.144 97 51 3 45 137 19 110 1.22e-12 63.2
MS.gene54779.t1 AT2G46030 35.345 116 69 4 54 167 19 130 1.40e-12 63.5
MS.gene54779.t1 AT2G46030 35.345 116 69 4 54 167 19 130 1.40e-12 63.5
MS.gene54779.t1 AT1G45050 38.144 97 51 3 45 137 19 110 1.75e-12 62.8

Find 56 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTTGGGGTGGTTTAAA+AGG 0.191154 1.2:-72915829 None:intergenic
AATTGTATAAATCAACTTTC+AGG 0.222701 1.2:-72916694 None:intergenic
CATCCAAATGTTGACCAGTT+TGG 0.280045 1.2:+72915871 MS.gene54779:CDS
CAGACTACAGAAGGAATTAA+TGG 0.312893 1.2:+72915318 MS.gene54779:intron
TTTAGAGGGCTCTCCAAGTT+AGG 0.344635 1.2:-72916326 None:intergenic
AGGAGAAGCGAGAGGCTTCT+TGG 0.357261 1.2:-72915001 None:intergenic
CGACTGGCCGCCGATTCAAC+AGG 0.365523 1.2:-72914961 None:intergenic
TCTGCAGCATAGTTGTTTAG+AGG 0.381020 1.2:-72916341 None:intergenic
TTGCCAAACTGGTCAACATT+TGG 0.388830 1.2:-72915874 None:intergenic
CTAGACAAATGTTGCCAAAC+TGG 0.389058 1.2:-72915885 None:intergenic
AGAAAATTCCCCTGTTGAAT+CGG 0.394486 1.2:+72914951 MS.gene54779:CDS
GGTGGTTTAAAAGGATAGTT+CGG 0.395297 1.2:-72915820 None:intergenic
ACAACTATGCTGCAGAGCTT+TGG 0.406851 1.2:+72916348 MS.gene54779:CDS
ACATGGATTGGCACAATTCA+AGG 0.410583 1.2:+72915742 MS.gene54779:CDS
GTGGTTTAAAAGGATAGTTC+GGG 0.414728 1.2:-72915819 None:intergenic
TCTGTCTATACAAAGTCTAT+TGG 0.417973 1.2:+72916222 MS.gene54779:CDS
CTTCGGCGGTGGTGTTTGAT+CGG 0.437236 1.2:-72914930 None:intergenic
CAGATGAGTGGAGGAGATCT+TGG 0.446524 1.2:+72915685 MS.gene54779:intron
CATTTGTCTAGACATCCTTC+AGG 0.450655 1.2:+72915897 MS.gene54779:CDS
GGCACAATTCAAGGTGGAAA+AGG 0.458217 1.2:+72915751 MS.gene54779:CDS
TCTAACAGCAGAGCCTAACT+TGG 0.460379 1.2:+72916313 MS.gene54779:intron
TGGAAAAGGAACTCCTTATG+AGG 0.468163 1.2:+72915765 MS.gene54779:CDS
GGATGATCGACGGTGGCGAC+TGG 0.470050 1.2:-72914977 None:intergenic
GGAGTATCTGCTTTCCCTGA+TGG 0.470606 1.2:+72915706 MS.gene54779:CDS
GTCCACAAGCAGTATTTAGC+TGG 0.486859 1.2:+72916658 MS.gene54779:CDS
ATAAATCAACTTTCAGGTGC+AGG 0.493849 1.2:-72916688 None:intergenic
TTATAAGATAAACCCTCATA+AGG 0.500118 1.2:-72915778 None:intergenic
TCATGCAGATTTCAAGAGAA+TGG 0.510290 1.2:+72916636 MS.gene54779:intron
GTCTCAAATTTCACTTGGGG+TGG 0.517777 1.2:-72915838 None:intergenic
TGCAGAGCTTTGGAATGATA+AGG 0.522423 1.2:+72916358 MS.gene54779:CDS
GAAGGAATTAATGGCTCTCA+TGG 0.522770 1.2:+72915327 MS.gene54779:CDS
GAAACGGAAGTTGTGTCAGC+AGG 0.527352 1.2:-72915027 None:intergenic
GAAGTTGTGTCAGCAGGAAG+AGG 0.534120 1.2:-72915021 None:intergenic
CGTCGTCTCAAATTTCACTT+GGG 0.535928 1.2:-72915842 None:intergenic
GGAGATGAACCTTTGAGAAA+CGG 0.539253 1.2:-72915043 None:intergenic
ACGTCGTCTCAAATTTCACT+TGG 0.545034 1.2:-72915843 None:intergenic
GTGCAATTGCAGACTACAGA+AGG 0.545344 1.2:+72915309 MS.gene54779:intron
CTGCAGCATAGTTGTTTAGA+GGG 0.556199 1.2:-72916340 None:intergenic
ACACAACTTCCGTTTCTCAA+AGG 0.558610 1.2:+72915034 MS.gene54779:CDS
TGGTTTAAAAGGATAGTTCG+GGG 0.571786 1.2:-72915818 None:intergenic
CTCCAGCTAAATACTGCTTG+TGG 0.577463 1.2:-72916660 None:intergenic
AGAAGCGAGAGGCTTCTTGG+AGG 0.590943 1.2:-72914998 None:intergenic
TTGTGATTGTATAGGACAAG+TGG 0.591402 1.2:+72916170 MS.gene54779:intron
GGAAAAGGAACTCCTTATGA+GGG 0.594287 1.2:+72915766 MS.gene54779:CDS
GGTTTAAAAGGATAGTTCGG+GGG 0.602685 1.2:-72915817 None:intergenic
TCTATACAAAGTCTATTGGA+AGG 0.607196 1.2:+72916226 MS.gene54779:CDS
AAATTCCCCTGTTGAATCGG+CGG 0.617461 1.2:+72914954 MS.gene54779:CDS
GACTGGCCGCCGATTCAACA+GGG 0.618918 1.2:-72914960 None:intergenic
GAGCTTTGGAATGATAAGGA+AGG 0.647349 1.2:+72916362 MS.gene54779:CDS
GCAGGAAGAGGAGAAGCGAG+AGG 0.663633 1.2:-72915009 None:intergenic
GCTTCTTGGAGGATGATCGA+CGG 0.669189 1.2:-72914987 None:intergenic
GTTTAAAAGGATAGTTCGGG+GGG 0.670883 1.2:-72915816 None:intergenic
GTCGTCTCAAATTTCACTTG+GGG 0.674521 1.2:-72915841 None:intergenic
ACTGGCCGCCGATTCAACAG+GGG 0.680091 1.2:-72914959 None:intergenic
TCTTGGAGGATGATCGACGG+TGG 0.707980 1.2:-72914984 None:intergenic
TGGATTGGCACAATTCAAGG+TGG 0.712983 1.2:+72915745 MS.gene54779:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATTTAGAAATATTTA+AGG - chr1.2:72915074-72915093 None:intergenic 10.0%
!! GTATTCATATTAAATATAAT+TGG - chr1.2:72916107-72916126 None:intergenic 10.0%
!! TGAAATTTAGAAATATTTAA+GGG - chr1.2:72915073-72915092 None:intergenic 10.0%
!! AAATTTAGAAATATTTAAGG+GGG - chr1.2:72915071-72915090 None:intergenic 15.0%
!! GAAATTTAGAAATATTTAAG+GGG - chr1.2:72915072-72915091 None:intergenic 15.0%
!! TCATTAAGAAACTAAATTTA+TGG + chr1.2:72915591-72915610 MS.gene54779:intron 15.0%
!!! CAGTCAATTTTTTTATTTTT+AGG + chr1.2:72915375-72915394 MS.gene54779:intron 15.0%
!!! TTAAATTTTAAACTTTGATG+TGG + chr1.2:72915242-72915261 MS.gene54779:intron 15.0%
!! AAAAAAAATCACATAATCCA+GGG + chr1.2:72916019-72916038 MS.gene54779:intron 20.0%
!! AAAAAAACTACATTAGAAGA+TGG - chr1.2:72915100-72915119 None:intergenic 20.0%
!! AATTTAGAAATATTTAAGGG+GGG - chr1.2:72915070-72915089 None:intergenic 20.0%
!! AGATCAATTGAACTAAAATT+TGG - chr1.2:72916479-72916498 None:intergenic 20.0%
!! TAAAAAAAATCACATAATCC+AGG + chr1.2:72916018-72916037 MS.gene54779:intron 20.0%
!! TCATCTACATATTTAATACT+AGG - chr1.2:72916129-72916148 None:intergenic 20.0%
! AATCATGTGAAATATGTTGT+TGG + chr1.2:72915554-72915573 MS.gene54779:intron 25.0%
! ACACCATAAATTTGACAATA+AGG - chr1.2:72915401-72915420 None:intergenic 25.0%
! AGTTTCTTAATGATACAAGA+AGG - chr1.2:72915584-72915603 None:intergenic 25.0%
! ATCAAATTTCATTTCATGCA+TGG - chr1.2:72915192-72915211 None:intergenic 25.0%
! ATCATGTGAAATATGTTGTT+GGG + chr1.2:72915555-72915574 MS.gene54779:intron 25.0%
! ATTGTCAAATTTATGGTGTT+TGG + chr1.2:72915402-72915421 MS.gene54779:intron 25.0%
! GTACTTTACTTCTTCATATT+AGG + chr1.2:72915525-72915544 MS.gene54779:intron 25.0%
! TAAAAATATTCTCACCATCA+GGG - chr1.2:72915723-72915742 None:intergenic 25.0%
! TTACTTCTTCATATTAGGTT+GGG + chr1.2:72915530-72915549 MS.gene54779:intron 25.0%
! TTATAAGATAAACCCTCATA+AGG - chr1.2:72915781-72915800 None:intergenic 25.0%
! TTTACTTCTTCATATTAGGT+TGG + chr1.2:72915529-72915548 MS.gene54779:intron 25.0%
!!! ATGGTGAGAATATTTTTACA+TGG + chr1.2:72915725-72915744 MS.gene54779:CDS 25.0%
!!! GAGAATATTTTTACATGGAT+TGG + chr1.2:72915730-72915749 MS.gene54779:CDS 25.0%
!!! GGTTTTAATCTTTGTAGATT+TGG + chr1.2:72916574-72916593 MS.gene54779:intron 25.0%
!!! TTTTTAGTCTTGATCAGTTT+TGG + chr1.2:72915116-72915135 MS.gene54779:intron 25.0%
CTAAATTCATGAATACCTGA+AGG - chr1.2:72915915-72915934 None:intergenic 30.0%
GAGCAATAACAACAAATAGT+TGG - chr1.2:72916449-72916468 None:intergenic 30.0%
GTAAAAATATTCTCACCATC+AGG - chr1.2:72915724-72915743 None:intergenic 30.0%
TAGAAAATAACTGATCAGAC+AGG - chr1.2:72916297-72916316 None:intergenic 30.0%
TCTATACAAAGTCTATTGGA+AGG + chr1.2:72916226-72916245 MS.gene54779:CDS 30.0%
TCTGTCTATACAAAGTCTAT+TGG + chr1.2:72916222-72916241 MS.gene54779:CDS 30.0%
TTCCTACTTTGTGATTGTAT+AGG + chr1.2:72916162-72916181 MS.gene54779:intron 30.0%
!! AGGCCTTATTGTCAAATTTA+TGG + chr1.2:72915395-72915414 MS.gene54779:intron 30.0%
AGAAAATTCCCCTGTTGAAT+CGG + chr1.2:72914951-72914970 MS.gene54779:CDS 35.0%
CAGACTACAGAAGGAATTAA+TGG + chr1.2:72915318-72915337 MS.gene54779:intron 35.0%
GGTGGTTTAAAAGGATAGTT+CGG - chr1.2:72915823-72915842 None:intergenic 35.0%
GTCCTATACAATCACAAAGT+AGG - chr1.2:72916167-72916186 None:intergenic 35.0%
GTGGTTTAAAAGGATAGTTC+GGG - chr1.2:72915822-72915841 None:intergenic 35.0%
TCAATGACTCTATTCCTTGA+GGG + chr1.2:72916504-72916523 MS.gene54779:intron 35.0%
TCATGCAGATTTCAAGAGAA+TGG + chr1.2:72916636-72916655 MS.gene54779:intron 35.0%
TGGTTTAAAAGGATAGTTCG+GGG - chr1.2:72915821-72915840 None:intergenic 35.0%
TTAGAAATATTTAAGGGGGG+AGG - chr1.2:72915067-72915086 None:intergenic 35.0%
TTCAATGACTCTATTCCTTG+AGG + chr1.2:72916503-72916522 MS.gene54779:intron 35.0%
TTGTGATTGTATAGGACAAG+TGG + chr1.2:72916170-72916189 MS.gene54779:intron 35.0%
! AGTAAAGTACTAAGTATGCG+TGG - chr1.2:72915515-72915534 None:intergenic 35.0%
! TTCAACAGGGGAATTTTCTT+CGG - chr1.2:72914950-72914969 None:intergenic 35.0%
! TTTGGAATGATAAGGAAGGT+TGG + chr1.2:72916366-72916385 MS.gene54779:intron 35.0%
!! GGTAATGGAAAAAAGAAGCA+CGG - chr1.2:72916060-72916079 None:intergenic 35.0%
!!! TTACTTTTTGTGCAGATGAG+TGG + chr1.2:72915673-72915692 MS.gene54779:intron 35.0%
ACACAACTTCCGTTTCTCAA+AGG + chr1.2:72915034-72915053 MS.gene54779:CDS 40.0%
ACATAATCCAGGGTAATCTG+AGG + chr1.2:72916029-72916048 MS.gene54779:intron 40.0%
ACGTCGTCTCAAATTTCACT+TGG - chr1.2:72915846-72915865 None:intergenic 40.0%
AGCAGTAAACACACAGGTAA+TGG - chr1.2:72916075-72916094 None:intergenic 40.0%
ATCCAAAGCAGTAAACACAC+AGG - chr1.2:72916081-72916100 None:intergenic 40.0%
CATCCAAATGTTGACCAGTT+TGG + chr1.2:72915871-72915890 MS.gene54779:CDS 40.0%
CATTTGTCTAGACATCCTTC+AGG + chr1.2:72915897-72915916 MS.gene54779:CDS 40.0%
CGTCGTCTCAAATTTCACTT+GGG - chr1.2:72915845-72915864 None:intergenic 40.0%
CTAGACAAATGTTGCCAAAC+TGG - chr1.2:72915888-72915907 None:intergenic 40.0%
CTAGTGCTCTAGTAGATTGT+AGG + chr1.2:72916553-72916572 MS.gene54779:intron 40.0%
CTGCAGCATAGTTGTTTAGA+GGG - chr1.2:72916343-72916362 None:intergenic 40.0%
GAAGGAATTAATGGCTCTCA+TGG + chr1.2:72915327-72915346 MS.gene54779:CDS 40.0%
GGAAAAGGAACTCCTTATGA+GGG + chr1.2:72915766-72915785 MS.gene54779:CDS 40.0%
GGTTTAAAAGGATAGTTCGG+GGG - chr1.2:72915820-72915839 None:intergenic 40.0%
GTCGTCTCAAATTTCACTTG+GGG - chr1.2:72915844-72915863 None:intergenic 40.0%
GTTTAAAAGGATAGTTCGGG+GGG - chr1.2:72915819-72915838 None:intergenic 40.0%
TACCTGTGTGTTTACTGCTT+TGG + chr1.2:72916076-72916095 MS.gene54779:intron 40.0%
TAGTTACCCACTATGAAGCA+CGG - chr1.2:72915487-72915506 None:intergenic 40.0%
TCTGCAGCATAGTTGTTTAG+AGG - chr1.2:72916344-72916363 None:intergenic 40.0%
TGGAAAAGGAACTCCTTATG+AGG + chr1.2:72915765-72915784 MS.gene54779:CDS 40.0%
TTCACTTGGGGTGGTTTAAA+AGG - chr1.2:72915832-72915851 None:intergenic 40.0%
TTGCCAAACTGGTCAACATT+TGG - chr1.2:72915877-72915896 None:intergenic 40.0%
! GGAGATGAACCTTTGAGAAA+CGG - chr1.2:72915046-72915065 None:intergenic 40.0%
! GTTTGGTAACCTATGAAGCA+CGG + chr1.2:72915419-72915438 MS.gene54779:intron 40.0%
!! ACATGGATTGGCACAATTCA+AGG + chr1.2:72915742-72915761 MS.gene54779:CDS 40.0%
!! GAGCTTTGGAATGATAAGGA+AGG + chr1.2:72916362-72916381 MS.gene54779:CDS 40.0%
!! TGCAGAGCTTTGGAATGATA+AGG + chr1.2:72916358-72916377 MS.gene54779:CDS 40.0%
!!! ATTTTAACTGGTGCTGCTCA+TGG + chr1.2:72916607-72916626 MS.gene54779:intron 40.0%
!!! GGTCGAATGCGTATTTTAAC+TGG + chr1.2:72916595-72916614 MS.gene54779:intron 40.0%
!!! TGCAAGTTTTAGAACCCTCA+AGG - chr1.2:72916521-72916540 None:intergenic 40.0%
AAATTCCCCTGTTGAATCGG+CGG + chr1.2:72914954-72914973 MS.gene54779:CDS 45.0%
AAGTGTCCGTGCTTCATAGT+GGG + chr1.2:72915478-72915497 MS.gene54779:intron 45.0%
ACAACTATGCTGCAGAGCTT+TGG + chr1.2:72916348-72916367 MS.gene54779:CDS 45.0%
ACTGACACAAACACAGACAC+CGG + chr1.2:72915967-72915986 MS.gene54779:intron 45.0%
CTCCAGCTAAATACTGCTTG+TGG - chr1.2:72916663-72916682 None:intergenic 45.0%
CTGATCAGACAGGAACACAA+AGG - chr1.2:72916287-72916306 None:intergenic 45.0%
GGCACAATTCAAGGTGGAAA+AGG + chr1.2:72915751-72915770 MS.gene54779:CDS 45.0%
GTCCACAAGCAGTATTTAGC+TGG + chr1.2:72916658-72916677 MS.gene54779:CDS 45.0%
GTCTCAAATTTCACTTGGGG+TGG - chr1.2:72915841-72915860 None:intergenic 45.0%
GTGCAATTGCAGACTACAGA+AGG + chr1.2:72915309-72915328 MS.gene54779:intron 45.0%
TATGAAGCACGGACACTTCT+TGG - chr1.2:72915476-72915495 None:intergenic 45.0%
TCTAACAGCAGAGCCTAACT+TGG + chr1.2:72916313-72916332 MS.gene54779:intron 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr1.2:72915431-72915450 None:intergenic 45.0%
TTTAGAGGGCTCTCCAAGTT+AGG - chr1.2:72916329-72916348 None:intergenic 45.0%
! AACAGGGGAATTTTCTTCGG+CGG - chr1.2:72914947-72914966 None:intergenic 45.0%
! CTTTTTGTGCAGATGAGTGG+AGG + chr1.2:72915676-72915695 MS.gene54779:intron 45.0%
!! TGGATTGGCACAATTCAAGG+TGG + chr1.2:72915745-72915764 MS.gene54779:CDS 45.0%
ATAGTTCGGGGGGAAACGTA+AGG - chr1.2:72915809-72915828 None:intergenic 50.0%
CAGATGAGTGGAGGAGATCT+TGG + chr1.2:72915685-72915704 MS.gene54779:intron 50.0%
GAAACGGAAGTTGTGTCAGC+AGG - chr1.2:72915030-72915049 None:intergenic 50.0%
GAAGTTGTGTCAGCAGGAAG+AGG - chr1.2:72915024-72915043 None:intergenic 50.0%
GCACGGACACTTCTTGGTTT+AGG - chr1.2:72915470-72915489 None:intergenic 50.0%
GCTTCTTGGAGGATGATCGA+CGG - chr1.2:72914990-72915009 None:intergenic 50.0%
! GAAGTGTCCGTGCTTCATAG+TGG + chr1.2:72915477-72915496 MS.gene54779:intron 50.0%
! GGAGTATCTGCTTTCCCTGA+TGG + chr1.2:72915706-72915725 MS.gene54779:CDS 50.0%
AGAAGCGAGAGGCTTCTTGG+AGG - chr1.2:72915001-72915020 None:intergenic 55.0%
AGGAGAAGCGAGAGGCTTCT+TGG - chr1.2:72915004-72915023 None:intergenic 55.0%
CCGGACACAACACTGACACA+CGG + chr1.2:72915986-72916005 MS.gene54779:intron 55.0%
CCGTGTGTCAGTGTTGTGTC+CGG - chr1.2:72915989-72916008 None:intergenic 55.0%
CGGATACAGACACAGACACG+AGG + chr1.2:72915439-72915458 MS.gene54779:intron 55.0%
CTTCGGCGGTGGTGTTTGAT+CGG - chr1.2:72914933-72914952 None:intergenic 55.0%
GGACACTCCTCAGATTACCC+TGG - chr1.2:72916039-72916058 None:intergenic 55.0%
TCTTGGAGGATGATCGACGG+TGG - chr1.2:72914987-72915006 None:intergenic 55.0%
! AGGGGAATTTTCTTCGGCGG+TGG - chr1.2:72914944-72914963 None:intergenic 55.0%
GCAGGAAGAGGAGAAGCGAG+AGG - chr1.2:72915012-72915031 None:intergenic 60.0%
!! ACTGGCCGCCGATTCAACAG+GGG - chr1.2:72914962-72914981 None:intergenic 60.0%
!! GACTGGCCGCCGATTCAACA+GGG - chr1.2:72914963-72914982 None:intergenic 60.0%
GGATGATCGACGGTGGCGAC+TGG - chr1.2:72914980-72914999 None:intergenic 65.0%
!! CGACTGGCCGCCGATTCAAC+AGG - chr1.2:72914964-72914983 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72914922 72916705 72914922 ID=MS.gene54779
chr1.2 mRNA 72914922 72916705 72914922 ID=MS.gene54779.t1;Parent=MS.gene54779
chr1.2 exon 72914922 72915055 72914922 ID=MS.gene54779.t1.exon1;Parent=MS.gene54779.t1
chr1.2 CDS 72914922 72915055 72914922 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
chr1.2 exon 72915321 72915348 72915321 ID=MS.gene54779.t1.exon2;Parent=MS.gene54779.t1
chr1.2 CDS 72915321 72915348 72915321 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
chr1.2 exon 72915688 72915918 72915688 ID=MS.gene54779.t1.exon3;Parent=MS.gene54779.t1
chr1.2 CDS 72915688 72915918 72915688 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
chr1.2 exon 72916184 72916247 72916184 ID=MS.gene54779.t1.exon4;Parent=MS.gene54779.t1
chr1.2 CDS 72916184 72916247 72916184 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
chr1.2 exon 72916324 72916383 72916324 ID=MS.gene54779.t1.exon5;Parent=MS.gene54779.t1
chr1.2 CDS 72916324 72916383 72916324 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
chr1.2 exon 72916644 72916705 72916644 ID=MS.gene54779.t1.exon6;Parent=MS.gene54779.t1
chr1.2 CDS 72916644 72916705 72916644 ID=cds.MS.gene54779.t1;Parent=MS.gene54779.t1
Gene Sequence

>MS.gene54779

ATGGAGGTCCGATCAAACACCACCGCCGAAGAAAATTCCCCTGTTGAATCGGCGGCCAGTCGCCACCGTCGATCATCCTCCAAGAAGCCTCTCGCTTCTCCTCTTCCTGCTGACACAACTTCCGTTTCTCAAAGGTTCATCTCCTCCCCCCTTAAATATTTCTAAATTTCATTTTCCATCTTCTAATGTAGTTTTTTTTAGTCTTGATCAGTTTTGGATTTGTTATTCATTGCAAACACATTTGAAGCTACAAATTTTGAGTAGAATCCATGCATGAAATGAAATTTGATTATCGTGTGTTCATTTTTACTCTTTTTATTTTAAATTTTAAACTTTGATGTGGTAGAATAGATTTTCATAGTTTCATTAATTCTATTTAATTTTTTTGTGCAATTGCAGACTACAGAAGGAATTAATGGCTCTCATGGTATGTATGTCTCTCTTTGCTGTATACAGTCAATTTTTTTATTTTTAGGCCTTATTGTCAAATTTATGGTGTTTGGTAACCTATGAAGCACGGATACAGACACAGACACGAGGACACGCCTAAACCAAGAAGTGTCCGTGCTTCATAGTGGGTAACTATTCAACCACGCATACTTAGTACTTTACTTCTTCATATTAGGTTGGGAAATCATGTGAAATATGTTGTTGGGTAACCTTCTTGTATCATTAAGAAACTAAATTTATGGTTGCTTTCTTTCTATTCAATATTCATTCGTTCTCACAAACTCACTCTAAATGCTGATGATTACTTTTTGTGCAGATGAGTGGAGGAGATCTTGGAGTATCTGCTTTCCCTGATGGTGAGAATATTTTTACATGGATTGGCACAATTCAAGGTGGAAAAGGAACTCCTTATGAGGGTTTATCTTATAAACTTTCCTTACGTTTCCCCCCGAACTATCCTTTTAAACCACCCCAAGTGAAATTTGAGACGACGTGCTTTCATCCAAATGTTGACCAGTTTGGCAACATTTGTCTAGACATCCTTCAGGTATTCATGAATTTAGAGAACAAAATAGCAAATACTAAGCTATGAAGCACTGACACAAACACAGACACCGGACACAACACTGACACACGGATAATAGTTTAAAAAAAATCACATAATCCAGGGTAATCTGAGGAGTGTCCGTGCTTCTTTTTTCCATTACCTGTGTGTTTACTGCTTTGGATCTACCAATTATATTTAATATGAATACCTAGTATTAAATATGTAGATGAAATATTCATTTCTTTCCTACTTTGTGATTGTATAGGACAAGTGGTCTTCAGCTTATGACTGTAGAACTATGCTTCTGTCTATACAAAGTCTATTGGAAGGTGTGTTCTTCATTTATTTTATGAGTTTTGCAGTCACCTTTGTGTTCCTGTCTGATCAGTTATTTTCTAACAGCAGAGCCTAACTTGGAGAGCCCTCTAAACAACTATGCTGCAGAGCTTTGGAATGATAAGGAAGGTTGGAAATTTTTTTCATTCTAACTAAAGCACATTTGTTTTCTGATTTAATTATTTAAACTTCCAACTATTTGTTGTTATTGCTCAGTTGCTCCAAATTTTAGTTCAATTGATCTCTATTTCAATGACTCTATTCCTTGAGGGTTCTAAAACTTGCATTACTTTAATATCTAGTGCTCTAGTAGATTGTAGGTTTTAATCTTTGTAGATTTGGTCGAATGCGTATTTTAACTGGTGCTGCTCATGGAATATATCATGCAGATTTCAAGAGAATGGTCCACAAGCAGTATTTAGCTGGAGAAGCACCTGCACCTGAAAGTTGA
Protein sequence

>MS.gene54779.t1

MEVRSNTTAEENSPVESAASRHRRSSSKKPLASPLPADTTSVSQRLQKELMALMMSGGDLGVSAFPDGENIFTWIGTIQGGKGTPYEGLSYKLSLRFPPNYPFKPPQVKFETTCFHPNVDQFGNICLDILQDKWSSAYDCRTMLLSIQSLLEEPNLESPLNNYAAELWNDKEDFKRMVHKQYLAGEAPAPES