AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54834.t1 MTR_2g091325 85.691 601 64 3 1 600 1 580 0.0 959
MS.gene54834.t1 MTR_2g091335 52.542 590 146 10 2 591 1 456 5.72e-162 476
MS.gene54834.t1 MTR_2g091280 53.255 599 206 11 1 567 1 557 3.05e-150 450
MS.gene54834.t1 MTR_2g091280 51.501 433 177 8 166 580 307 724 1.65e-92 300
MS.gene54834.t1 MTR_2g091015 51.929 622 203 11 5 573 5 583 3.68e-146 445
MS.gene54834.t1 MTR_2g091015 54.337 392 117 8 232 591 362 723 1.72e-89 296
MS.gene54834.t1 MTR_2g091260 46.154 637 278 11 2 591 1 619 1.61e-130 404
MS.gene54834.t1 MTR_2g091010 44.127 630 299 13 2 597 1 611 2.10e-125 386
MS.gene54834.t1 MTR_2g091030 55.111 450 168 8 2 445 1 422 1.12e-115 357
MS.gene54834.t1 MTR_2g091030 49.511 307 103 7 309 591 164 442 2.59e-48 178
MS.gene54834.t1 MTR_2g093010 43.610 626 268 11 1 574 1 593 2.49e-115 363
MS.gene54834.t1 MTR_2g093010 50.485 206 90 2 243 438 462 665 1.91e-40 158
MS.gene54834.t1 MTR_2g093010 34.375 256 130 8 135 375 426 658 7.05e-14 75.5
MS.gene54834.t1 MTR_2g093010 43.520 625 268 11 2 574 1 592 1.93e-114 361
MS.gene54834.t1 MTR_2g093010 50.485 206 90 2 243 438 461 664 1.78e-40 158
MS.gene54834.t1 MTR_2g093010 34.375 256 130 8 135 375 425 657 6.41e-14 75.5
MS.gene54834.t1 MTR_2g091330 46.982 613 255 14 2 567 1 590 4.55e-114 353
MS.gene54834.t1 MTR_2g091285 51.236 445 178 6 1 440 1 411 5.54e-113 350
MS.gene54834.t1 MTR_2g091285 51.178 297 116 5 309 591 155 436 5.54e-63 218
MS.gene54834.t1 MTR_7g056313 56.522 368 98 7 75 414 36 369 3.26e-110 335
MS.gene54834.t1 MTR_7g056313 41.603 262 134 5 309 554 111 369 6.67e-30 121
MS.gene54834.t1 MTR_2g091290 44.112 569 283 12 51 597 26 581 6.98e-110 348
MS.gene54834.t1 MTR_2g091080 41.331 646 249 14 43 599 3 607 1.10e-108 343
MS.gene54834.t1 MTR_2g091370 44.123 587 294 11 2 570 1 571 5.76e-106 339
MS.gene54834.t1 MTR_2g091315 42.695 616 240 15 2 559 1 561 1.04e-101 320
MS.gene54834.t1 MTR_2g091315 32.143 392 195 9 211 574 97 445 5.32e-16 81.6
MS.gene54834.t1 MTR_2g091250 42.302 643 243 17 1 568 12 601 2.86e-96 320
MS.gene54834.t1 MTR_2g091250 47.619 420 139 4 232 570 394 813 1.29e-80 276
MS.gene54834.t1 MTR_2g091250 46.838 427 173 8 210 599 631 1040 7.62e-74 257
MS.gene54834.t1 MTR_2g091250 48.538 342 152 2 243 560 504 845 7.59e-69 243
MS.gene54834.t1 MTR_2g091250 41.737 472 192 9 168 560 266 733 4.55e-64 229
MS.gene54834.t1 MTR_2g091105 45.720 479 170 10 2 455 1 414 4.61e-93 301
MS.gene54834.t1 MTR_2g091105 51.373 255 110 5 309 553 150 400 3.14e-44 168
MS.gene54834.t1 MTR_2g091105 35.211 284 162 5 278 561 105 366 6.22e-20 94.4
MS.gene54834.t1 MTR_5g038810 53.846 351 127 6 71 421 17 332 1.97e-86 283
MS.gene54834.t1 MTR_5g038810 45.349 172 93 1 347 518 147 317 4.25e-27 116
MS.gene54834.t1 MTR_5g038810 38.672 256 152 2 319 574 81 331 4.74e-27 116
MS.gene54834.t1 MTR_2g091110 37.947 643 269 14 42 581 2 617 1.65e-84 288
MS.gene54834.t1 MTR_2g091110 46.275 443 200 7 165 570 457 898 1.12e-80 277
MS.gene54834.t1 MTR_2g091110 52.219 383 123 5 233 555 648 1030 8.90e-74 257
MS.gene54834.t1 MTR_2g091110 41.151 469 229 8 130 568 319 770 5.79e-61 219
MS.gene54834.t1 MTR_2g091110 39.737 380 131 8 166 457 661 1030 1.72e-42 164
MS.gene54834.t1 MTR_2g091005 38.529 571 288 13 2 559 1 521 1.15e-78 261
MS.gene54834.t1 MTR_6g045183 42.771 498 218 11 1 442 1 487 1.28e-77 261
MS.gene54834.t1 MTR_6g045183 38.701 385 200 6 211 579 134 498 1.53e-41 160
MS.gene54834.t1 MTR_3g110385 37.321 560 255 10 92 579 34 569 1.35e-71 246
MS.gene54834.t1 MTR_2g090640 49.693 326 110 3 204 475 100 425 8.12e-68 230
MS.gene54834.t1 MTR_2g090640 46.429 336 118 11 149 433 109 433 6.01e-46 171
MS.gene54834.t1 MTR_2g090640 42.085 259 130 4 316 567 125 370 9.26e-31 127
MS.gene54834.t1 MTR_2g091245 40.049 412 211 6 48 444 13 403 8.92e-62 216
MS.gene54834.t1 MTR_2g091245 44.518 301 121 6 309 579 114 398 3.38e-40 155
MS.gene54834.t1 MTR_2g010420 33.222 599 283 12 51 579 25 576 1.32e-61 218
MS.gene54834.t1 MTR_2g010420 37.079 178 94 4 249 419 425 591 7.19e-16 81.6
MS.gene54834.t1 MTR_2g010420 33.222 599 283 12 51 579 25 576 3.31e-61 218
MS.gene54834.t1 MTR_2g010420 37.079 178 94 4 249 419 425 591 5.54e-16 82.0
MS.gene54834.t1 MTR_5g078510 51.014 296 134 2 290 581 1 289 1.49e-60 211
MS.gene54834.t1 MTR_5g078510 38.406 276 111 4 249 479 6 267 1.12e-26 114
MS.gene54834.t1 MTR_5g078510 39.850 266 138 6 207 457 26 284 9.78e-21 96.7
MS.gene54834.t1 MTR_5g078510 34.375 288 140 7 145 393 2 279 5.25e-18 87.8
MS.gene54834.t1 MTR_2g091040 39.597 447 190 12 1 441 1 373 1.12e-58 205
MS.gene54834.t1 MTR_2g091040 39.564 321 164 7 286 599 96 393 8.66e-34 135
MS.gene54834.t1 MTR_2g091090 39.597 447 190 12 1 441 1 373 1.06e-57 205
MS.gene54834.t1 MTR_2g091090 39.564 321 164 7 286 599 96 393 1.16e-33 136
MS.gene54834.t1 MTR_2g104190 33.575 551 230 13 2 519 1 448 3.74e-55 197
MS.gene54834.t1 MTR_2g104190 33.178 214 110 4 347 560 267 447 1.45e-13 74.3
MS.gene54834.t1 MTR_2g091240 50.885 226 97 3 374 599 125 336 2.72e-43 164
MS.gene54834.t1 MTR_2g091240 33.081 396 168 10 41 424 10 320 3.63e-28 119
MS.gene54834.t1 MTR_5g078500 34.383 413 162 13 2 414 1 304 5.47e-41 151
MS.gene54834.t1 MTR_5g078500 36.508 189 109 3 309 497 126 303 6.76e-16 79.3
MS.gene54834.t1 MTR_2g091025 43.210 243 104 3 311 553 136 344 1.18e-34 139
MS.gene54834.t1 MTR_2g091025 43.590 234 103 4 251 484 136 340 1.08e-32 133
MS.gene54834.t1 MTR_2g091025 42.060 233 119 6 368 594 137 359 3.77e-31 128
MS.gene54834.t1 MTR_2g091025 31.183 372 203 14 2 355 1 337 7.77e-12 68.6
MS.gene54834.t1 MTR_2g091360 49.045 157 69 2 347 503 24 169 8.33e-27 111
MS.gene54834.t1 MTR_2g091360 45.714 175 67 3 231 405 23 169 4.75e-24 103
MS.gene54834.t1 MTR_2g091360 40.972 144 75 1 304 447 36 169 6.07e-16 79.7
MS.gene54834.t1 MTR_2g091360 42.857 133 58 2 421 549 41 159 3.37e-13 71.2
MS.gene54834.t1 MTR_2g091360 36.567 134 80 2 389 518 24 156 3.46e-11 65.5
MS.gene54834.t1 MTR_2g103640 45.249 221 74 7 365 567 37 228 5.80e-22 98.2
MS.gene54834.t1 MTR_2g103640 33.684 285 123 11 81 357 2 228 7.99e-21 94.7
MS.gene54834.t1 MTR_2g103620 49.405 168 75 3 365 526 61 224 7.16e-20 92.4
MS.gene54834.t1 MTR_2g103620 38.224 259 121 9 71 329 4 223 1.26e-18 88.6
MS.gene54834.t1 MTR_8g106540 48.958 96 45 1 381 476 26 117 3.39e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCAATCTCTTTCTTTA+TGG 0.045208 2.1:+9580646 None:intergenic
TCGTCAAAATAGTTCATTAA+TGG 0.190625 2.1:+9579453 None:intergenic
AGCAATGATTCCTCAGATTA+TGG 0.195846 2.1:-9580993 MS.gene54834:CDS
CAATTATCCAAAGTATTTAA+AGG 0.215867 2.1:-9578776 MS.gene54834:CDS
TATTTCGTCAAGAATTAAAA+TGG 0.260976 2.1:-9580783 MS.gene54834:CDS
GTAATACACTACCAGTTAAA+AGG 0.320312 2.1:-9580913 MS.gene54834:CDS
TCAAAGCTTAATAAATTTGA+TGG 0.323581 2.1:-9579516 MS.gene54834:CDS
AGATCTTGAAAATAAGAAAA+AGG 0.341083 2.1:-9580615 MS.gene54834:CDS
GCAATGATTCCTCAGATTAT+GGG 0.352268 2.1:-9580992 MS.gene54834:CDS
TCACATTCCTTTAAATACTT+TGG 0.356707 2.1:+9578769 None:intergenic
TCAAAAGAGGAGGAGTTTAA+AGG 0.367324 2.1:-9579768 MS.gene54834:CDS
ACATGTAATAATAACAATAA+TGG 0.385710 2.1:-9580962 MS.gene54834:CDS
TATAAAGAGAAGCAACTTGA+TGG 0.408541 2.1:-9580104 MS.gene54834:CDS
TATTTGATGGAGGACTTGAT+TGG 0.409942 2.1:-9580494 MS.gene54834:CDS
TTGACTCAAGCTCCTTCATT+CGG 0.421444 2.1:+9580291 None:intergenic
TTGGTAGAAAAGTCATTTGT+GGG 0.429867 2.1:-9580710 MS.gene54834:CDS
AATTTATTAAGCTTTGACTC+TGG 0.434556 2.1:+9579522 None:intergenic
TTAAAAGACAAGCAATTTGA+AGG 0.442022 2.1:-9579558 MS.gene54834:CDS
GGAAGCACACCTCTATTTGA+TGG 0.443917 2.1:-9580507 MS.gene54834:CDS
GAGAATAAGTTCAAAGTACT+AGG 0.444546 2.1:-9579594 MS.gene54834:CDS
TTGATCCATGCTCCTTCACC+CGG 0.446148 2.1:+9580249 None:intergenic
CGTTATCATCATACGGTGCT+GGG 0.451444 2.1:+9580834 None:intergenic
CTGATTCCAACTCCTTCACT+CGG 0.451492 2.1:+9579871 None:intergenic
AGTCATTTGTGGGTTGCAAA+AGG 0.460427 2.1:-9580700 MS.gene54834:CDS
GAAGGAGGAATTCAAAGGTC+AGG 0.471633 2.1:-9579721 MS.gene54834:CDS
TCAAAAGAAAAGCAATTTGA+AGG 0.472186 2.1:-9579810 MS.gene54834:CDS
GTCCATAAAGAAAGAGATTG+AGG 0.479010 2.1:-9580648 MS.gene54834:CDS
ATTGGTAGAAAAGTCATTTG+TGG 0.482024 2.1:-9580711 MS.gene54834:CDS
TCGTTATCATCATACGGTGC+TGG 0.482747 2.1:+9580833 None:intergenic
TTGATTCAAACTCCTTTGCT+CGG 0.482976 2.1:+9579913 None:intergenic
GCAATTGAAAGGACAAGTTA+AGG 0.485918 2.1:-9580135 MS.gene54834:CDS
CGAAGCTCGCAAGAAAATCC+AGG 0.486257 2.1:-9580567 MS.gene54834:CDS
AAAGCAGCAATTTGAAAGCC+AGG 0.488186 2.1:-9579679 MS.gene54834:CDS
GCAAGCCATTTAAAATTGAA+AGG 0.489730 2.1:+9581094 None:intergenic
AGAGAAGGAATTTGAAATCC+AGG 0.492808 2.1:-9580363 MS.gene54834:CDS
AATTTCTACAGTTGAATGAT+GGG 0.496034 2.1:-9581169 None:intergenic
ACAATTGAAAGGACAAGTTA+AGG 0.498337 2.1:-9579967 MS.gene54834:CDS
CATTCACTAGCTCCTTCACC+TGG 0.501627 2.1:+9580345 None:intergenic
GAAGGAGTTTGAATCAAAGA+AGG 0.501648 2.1:-9579739 MS.gene54834:CDS
AATACTTTGGATAATTGAGA+AGG 0.508936 2.1:+9578782 None:intergenic
TCAAGTCCTCCATCAAATAG+AGG 0.517023 2.1:+9580498 None:intergenic
TCAAAAGAGGATGAATTTGA+AGG 0.517933 2.1:-9579894 MS.gene54834:CDS
AAAAGAAGCATTTCGAGAGC+AGG 0.517991 2.1:-9579848 MS.gene54834:CDS
TAGATTCCAGCTCCTTCACA+TGG 0.519246 2.1:+9580039 None:intergenic
TAAATTTGATGGACAAGTGA+AGG 0.519927 2.1:-9579505 MS.gene54834:CDS
GTGATTTGAACTCCTCCACT+TGG 0.520171 2.1:+9580165 None:intergenic
TAGAGAAGCAACATGAAGGC+CGG 0.522149 2.1:-9580268 MS.gene54834:CDS
CAAAACAGAAGCATTTCGAA+AGG 0.523138 2.1:-9580409 MS.gene54834:CDS
AGAACAGCGGAAAGAATTTG+AGG 0.529889 2.1:-9579622 MS.gene54834:CDS
TATTGTTTCACTGTCAACTC+AGG 0.532627 2.1:+9579480 None:intergenic
TTTGACGAGGAAACAGAATC+GGG 0.535253 2.1:-9579438 MS.gene54834:intron
CGAAGGCCATGTGAAGGAGC+TGG 0.538482 2.1:-9580045 MS.gene54834:CDS
GCATTTCGAAGGCCGAATGA+AGG 0.542504 2.1:-9580303 MS.gene54834:CDS
GGAATTTGAATCAAAAGAGA+AGG 0.545096 2.1:-9580378 MS.gene54834:CDS
GATAACAACAATGCCTTGCA+CGG 0.547240 2.1:-9580881 MS.gene54834:CDS
GCAACATGAAGGCCGGGTGA+AGG 0.547954 2.1:-9580261 MS.gene54834:CDS
AGAGAAGCAACATGAAGGCC+GGG 0.549296 2.1:-9580267 MS.gene54834:CDS
GAAGGCCGGGTGAAGGAGCA+TGG 0.549364 2.1:-9580254 MS.gene54834:CDS
GGAGTTTGAATCAAAGAAGG+AGG 0.550239 2.1:-9579736 MS.gene54834:CDS
TTTCTTAATCGAACCGTGCA+AGG 0.550857 2.1:+9580868 None:intergenic
ATACTTTGGATAATTGAGAA+GGG 0.550923 2.1:+9578783 None:intergenic
TGAATTTGAAGGCCGAGTGA+AGG 0.551409 2.1:-9579883 MS.gene54834:CDS
AAAGGAGTTTGAATCAAAAG+AGG 0.554492 2.1:-9579907 MS.gene54834:CDS
TGAAGAGCAAGTGAAGGAGC+TGG 0.555980 2.1:-9580213 MS.gene54834:CDS
GAAAATCGATGGCCGAGCAA+AGG 0.564000 2.1:-9579925 MS.gene54834:CDS
GCAATTTGAAGGACAAGTGA+AGG 0.564315 2.1:-9579799 MS.gene54834:CDS
TGAGGAATCATTGCTGACAA+AGG 0.566248 2.1:+9581001 None:intergenic
GCAATTTGAAGGACAAGTCA+AGG 0.571346 2.1:-9579547 MS.gene54834:CDS
GGAGTTTAAAGGTCAAGTGA+AGG 0.577732 2.1:-9579757 MS.gene54834:CDS
GAAGGAGTTCCAGTCAAAAG+AGG 0.579907 2.1:-9579781 MS.gene54834:CDS
AGAATAAGTTCAAAGTACTA+GGG 0.580517 2.1:-9579593 MS.gene54834:CDS
TCACAACAGAGGCAATTGAA+AGG 0.580934 2.1:-9580146 MS.gene54834:CDS
GCATTTCGAGAGCAGGCTGA+AGG 0.586547 2.1:-9579841 MS.gene54834:CDS
TAATGGTTCTGTTAAGAAGA+GGG 0.588477 2.1:-9580945 MS.gene54834:CDS
TCAATAGAGAAGCAACATGA+AGG 0.589170 2.1:-9580272 MS.gene54834:CDS
GGAATTTGAAATCCAGGTGA+AGG 0.590644 2.1:-9580357 MS.gene54834:CDS
TGAAGGCCGAGTGAAGGAGT+TGG 0.591089 2.1:-9579877 MS.gene54834:CDS
ATAATGGTTCTGTTAAGAAG+AGG 0.593792 2.1:-9580946 MS.gene54834:CDS
GTTAAGAAGAGGGATACTAC+TGG 0.594551 2.1:-9580935 MS.gene54834:CDS
CAAAATTGAAGAATGTGTCA+AGG 0.598746 2.1:-9580543 MS.gene54834:CDS
GATAGAACTTCATCAAGTCA+AGG 0.606983 2.1:-9580441 MS.gene54834:CDS
TGTGAAGACTTTGAATCTGA+AGG 0.609221 2.1:-9581037 MS.gene54834:CDS
GCATTTCGAAAGGCAAGTGA+AGG 0.609390 2.1:-9580399 MS.gene54834:CDS
TCAAAGAAGGAGGAATTCAA+AGG 0.609408 2.1:-9579726 MS.gene54834:CDS
TCATCGTCGTTATCATCATA+CGG 0.611314 2.1:+9580827 None:intergenic
TCAAAAGAGAGACAATTGAA+AGG 0.615299 2.1:-9579978 MS.gene54834:CDS
GGAGTTCCAGTCAAAAGAGG+AGG 0.632267 2.1:-9579778 MS.gene54834:CDS
TGTAAAGAGAAGAAAATCGA+TGG 0.632784 2.1:-9579936 MS.gene54834:CDS
GAAGCTCGCAAGAAAATCCA+GGG 0.635919 2.1:-9580566 MS.gene54834:CDS
GCTGAAGAAAGAACTCACAT+TGG 0.636049 2.1:-9580729 MS.gene54834:CDS
AGAATTCGAAGGCCATGTGA+AGG 0.636837 2.1:-9580051 MS.gene54834:CDS
GTTCTCAAACCCATAATCTG+AGG 0.639071 2.1:+9580983 None:intergenic
CGGTTCGATTAAGAAATCAA+AGG 0.648202 2.1:-9580861 MS.gene54834:CDS
ACAAAACAGAAGCATTTCGA+AGG 0.648678 2.1:-9580314 MS.gene54834:CDS
AGAAGCAATTTGAAGAACAG+CGG 0.652301 2.1:-9579635 MS.gene54834:CDS
GAAGCAACTTGATGGACGAG+TGG 0.655238 2.1:-9580096 MS.gene54834:CDS
GTTATCATCATACGGTGCTG+GGG 0.667774 2.1:+9580835 None:intergenic
AGCACACCTCTATTTGATGG+AGG 0.669820 2.1:-9580504 MS.gene54834:CDS
AGGAGTTCAAATCACAACAG+AGG 0.718141 2.1:-9580157 MS.gene54834:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAATTATTTATGT+TGG - chr2.1:9579324-9579343 MS.gene54834:intron 15.0%
!! ACATGTAATAATAACAATAA+TGG - chr2.1:9578961-9578980 MS.gene54834:intron 15.0%
!! AGATCTTGAAAATAAGAAAA+AGG - chr2.1:9579308-9579327 MS.gene54834:intron 20.0%
!! TATTTCGTCAAGAATTAAAA+TGG - chr2.1:9579140-9579159 MS.gene54834:intron 20.0%
!! TCAAAGCTTAATAAATTTGA+TGG - chr2.1:9580407-9580426 MS.gene54834:CDS 20.0%
!!! AAGAACCTTTCAATTTTAAA+TGG - chr2.1:9578824-9578843 MS.gene54834:intron 20.0%
!!! ATTTTAATTCTTGACGAAAT+AGG + chr2.1:9579141-9579160 None:intergenic 20.0%
!!! CAATTATCCAAAGTATTTAA+AGG - chr2.1:9581147-9581166 MS.gene54834:CDS 20.0%
! AATACTTTGGATAATTGAGA+AGG + chr2.1:9581144-9581163 None:intergenic 25.0%
! ACACAAAATATGAAAAAGCA+TGG + chr2.1:9580832-9580851 None:intergenic 25.0%
! ATACTTTGGATAATTGAGAA+GGG + chr2.1:9581143-9581162 None:intergenic 25.0%
! TCAAAAAATAGAGAATTCGA+AGG - chr2.1:9579861-9579880 MS.gene54834:CDS 25.0%
! TCAAAAGAAAAGCAATTTGA+AGG - chr2.1:9580113-9580132 MS.gene54834:CDS 25.0%
! TCACATTCCTTTAAATACTT+TGG + chr2.1:9581157-9581176 None:intergenic 25.0%
! TCGTCAAAATAGTTCATTAA+TGG + chr2.1:9580473-9580492 None:intergenic 25.0%
! TTAAAAGACAAGCAATTTGA+AGG - chr2.1:9580365-9580384 MS.gene54834:CDS 25.0%
!! AATTTATTAAGCTTTGACTC+TGG + chr2.1:9580404-9580423 None:intergenic 25.0%
!! AGAATAAGTTCAAAGTACTA+GGG - chr2.1:9580330-9580349 MS.gene54834:CDS 25.0%
!! TCAATTAACATCCTTTTAAC+TGG + chr2.1:9579024-9579043 None:intergenic 25.0%
!!! AAGTTTGTTATTTCCCTATT+TGG - chr2.1:9580793-9580812 MS.gene54834:CDS 25.0%
!!! ATTAATGAACTATTTTGACG+AGG - chr2.1:9580472-9580491 MS.gene54834:CDS 25.0%
!!! GATAAATCAAAGTTTTGTGT+TGG - chr2.1:9578790-9578809 MS.gene54834:CDS 25.0%
AAAGGAGTTTGAATCAAAAG+AGG - chr2.1:9580016-9580035 MS.gene54834:CDS 30.0%
ACAATTGAAAGGACAAGTTA+AGG - chr2.1:9579956-9579975 MS.gene54834:CDS 30.0%
ATCAGTGGATATATAGTCAT+CGG + chr2.1:9580732-9580751 None:intergenic 30.0%
ATTGGTAGAAAAGTCATTTG+TGG - chr2.1:9579212-9579231 MS.gene54834:intron 30.0%
CAAAATTGAAGAATGTGTCA+AGG - chr2.1:9579380-9579399 MS.gene54834:intron 30.0%
CAAACAACAGAATCCAAATA+GGG + chr2.1:9580809-9580828 None:intergenic 30.0%
CACATGATTTCTTCTATTTC+AGG - chr2.1:9581090-9581109 MS.gene54834:CDS 30.0%
CCAAAATATATGTGTGAACT+TGG - chr2.1:9580627-9580646 MS.gene54834:CDS 30.0%
GGAATTTGAATCAAAAGAGA+AGG - chr2.1:9579545-9579564 MS.gene54834:CDS 30.0%
GTAATACACTACCAGTTAAA+AGG - chr2.1:9579010-9579029 MS.gene54834:intron 30.0%
TATAAAGAGAAGCAACTTGA+TGG - chr2.1:9579819-9579838 MS.gene54834:CDS 30.0%
TCAAAAGAGAGACAATTGAA+AGG - chr2.1:9579945-9579964 MS.gene54834:CDS 30.0%
TCAAAAGAGGATGAATTTGA+AGG - chr2.1:9580029-9580048 MS.gene54834:CDS 30.0%
TGTAAAGAGAAGAAAATCGA+TGG - chr2.1:9579987-9580006 MS.gene54834:CDS 30.0%
TTGGTAGAAAAGTCATTTGT+GGG - chr2.1:9579213-9579232 MS.gene54834:intron 30.0%
! ATAATGGTTCTGTTAAGAAG+AGG - chr2.1:9578977-9578996 MS.gene54834:intron 30.0%
! CCAAGTTCACACATATATTT+TGG + chr2.1:9580630-9580649 None:intergenic 30.0%
! GAGAATAAGTTCAAAGTACT+AGG - chr2.1:9580329-9580348 MS.gene54834:CDS 30.0%
! GCAAGCCATTTAAAATTGAA+AGG + chr2.1:9578832-9578851 None:intergenic 30.0%
! TAAATTTGATGGACAAGTGA+AGG - chr2.1:9580418-9580437 MS.gene54834:CDS 30.0%
! TAATGGTTCTGTTAAGAAGA+GGG - chr2.1:9578978-9578997 MS.gene54834:intron 30.0%
! TGATTTCTTCTATTTCAGGT+TGG - chr2.1:9581094-9581113 MS.gene54834:CDS 30.0%
!! TTGATTTTAAGTACTCAACC+TGG + chr2.1:9580265-9580284 None:intergenic 30.0%
AACCTGATCTACACATATGA+GGG - chr2.1:9580582-9580601 MS.gene54834:CDS 35.0%
ACCATGTATCATTTCATCAG+TGG + chr2.1:9580747-9580766 None:intergenic 35.0%
AGAAGCAATTTGAAGAACAG+CGG - chr2.1:9580288-9580307 MS.gene54834:CDS 35.0%
AGCAATGATTCCTCAGATTA+TGG - chr2.1:9578930-9578949 MS.gene54834:intron 35.0%
CGGTTCGATTAAGAAATCAA+AGG - chr2.1:9579062-9579081 MS.gene54834:intron 35.0%
CTCCTCAATCTCTTTCTTTA+TGG + chr2.1:9579280-9579299 None:intergenic 35.0%
GAAGGAGTTTGAATCAAAGA+AGG - chr2.1:9580184-9580203 MS.gene54834:CDS 35.0%
GAGGTTATGACTCATTTCAT+TGG - chr2.1:9581027-9581046 MS.gene54834:CDS 35.0%
GATAGAACTTCATCAAGTCA+AGG - chr2.1:9579482-9579501 MS.gene54834:CDS 35.0%
GCAAACAACAGAATCCAAAT+AGG + chr2.1:9580810-9580829 None:intergenic 35.0%
GCAATGATTCCTCAGATTAT+GGG - chr2.1:9578931-9578950 MS.gene54834:intron 35.0%
GCAATTGAAAGGACAAGTTA+AGG - chr2.1:9579788-9579807 MS.gene54834:CDS 35.0%
GTCCATAAAGAAAGAGATTG+AGG - chr2.1:9579275-9579294 MS.gene54834:intron 35.0%
TAACCTGATCTACACATATG+AGG - chr2.1:9580581-9580600 MS.gene54834:CDS 35.0%
TATTGTTTCACTGTCAACTC+AGG + chr2.1:9580446-9580465 None:intergenic 35.0%
TATTTGATGGAGGACTTGAT+TGG - chr2.1:9579429-9579448 MS.gene54834:intron 35.0%
TCAAAAGAGGAGGAGTTTAA+AGG - chr2.1:9580155-9580174 MS.gene54834:CDS 35.0%
TCAAAGAAGGAGGAATTCAA+AGG - chr2.1:9580197-9580216 MS.gene54834:CDS 35.0%
TCAATAGAGAAGCAACATGA+AGG - chr2.1:9579651-9579670 MS.gene54834:CDS 35.0%
TCATCGTCGTTATCATCATA+CGG + chr2.1:9579099-9579118 None:intergenic 35.0%
TCCACTGATGAAATGATACA+TGG - chr2.1:9580743-9580762 MS.gene54834:CDS 35.0%
TGTGAAGACTTTGAATCTGA+AGG - chr2.1:9578886-9578905 MS.gene54834:intron 35.0%
TTGAATGTAATCACACGTGT+CGG - chr2.1:9580942-9580961 MS.gene54834:CDS 35.0%
TTGATTCAAACTCCTTTGCT+CGG + chr2.1:9580013-9580032 None:intergenic 35.0%
! AGAGAAGGAATTTGAAATCC+AGG - chr2.1:9579560-9579579 MS.gene54834:CDS 35.0%
! TCATTGGTACTCATTTTGCT+GGG - chr2.1:9581043-9581062 MS.gene54834:CDS 35.0%
! TGTCAAGGATTTTGTAGCAA+AGG - chr2.1:9579395-9579414 MS.gene54834:intron 35.0%
! TTCATTGGTACTCATTTTGC+TGG - chr2.1:9581042-9581061 MS.gene54834:CDS 35.0%
! TTTTGACGAGGAAACAGAAT+CGG - chr2.1:9580484-9580503 MS.gene54834:CDS 35.0%
!! ACAAAACAGAAGCATTTCGA+AGG - chr2.1:9579609-9579628 MS.gene54834:CDS 35.0%
!! AGATTTTGAAGAGCAAGTGA+AGG - chr2.1:9579704-9579723 MS.gene54834:CDS 35.0%
!! CAAAACAGAAGCATTTCGAA+AGG - chr2.1:9579514-9579533 MS.gene54834:CDS 35.0%
!!! GTGTTTTGAAAGTCAAGTTG+AGG - chr2.1:9579914-9579933 MS.gene54834:CDS 35.0%
AAAGCAGCAATTTGAAAGCC+AGG - chr2.1:9580244-9580263 MS.gene54834:CDS 40.0%
AATGATACATGGTCTCTGTC+TGG - chr2.1:9580754-9580773 MS.gene54834:CDS 40.0%
ACACATATGAGGGAGCTTAA+AGG - chr2.1:9580592-9580611 MS.gene54834:CDS 40.0%
AGAACAGCGGAAAGAATTTG+AGG - chr2.1:9580301-9580320 MS.gene54834:CDS 40.0%
AGGAGTTCAAATCACAACAG+AGG - chr2.1:9579766-9579785 MS.gene54834:CDS 40.0%
ATATGAGGGAGCTTAAAGGT+AGG - chr2.1:9580596-9580615 MS.gene54834:CDS 40.0%
GATAACAACAATGCCTTGCA+CGG - chr2.1:9579042-9579061 MS.gene54834:intron 40.0%
GCAATTTGAAGGACAAGTCA+AGG - chr2.1:9580376-9580395 MS.gene54834:CDS 40.0%
GCAATTTGAAGGACAAGTGA+AGG - chr2.1:9580124-9580143 MS.gene54834:CDS 40.0%
GCTGAAGAAAGAACTCACAT+TGG - chr2.1:9579194-9579213 MS.gene54834:intron 40.0%
GGAGTTTAAAGGTCAAGTGA+AGG - chr2.1:9580166-9580185 MS.gene54834:CDS 40.0%
GGAGTTTGAATCAAAGAAGG+AGG - chr2.1:9580187-9580206 MS.gene54834:CDS 40.0%
GTTAAGAAGAGGGATACTAC+TGG - chr2.1:9578988-9579007 MS.gene54834:intron 40.0%
GTTCTCAAACCCATAATCTG+AGG + chr2.1:9578943-9578962 None:intergenic 40.0%
TCAAGTCCTCCATCAAATAG+AGG + chr2.1:9579428-9579447 None:intergenic 40.0%
TCACAACAGAGGCAATTGAA+AGG - chr2.1:9579777-9579796 MS.gene54834:CDS 40.0%
TGAGGAATCATTGCTGACAA+AGG + chr2.1:9578925-9578944 None:intergenic 40.0%
TTGACTCAAGCTCCTTCATT+CGG + chr2.1:9579635-9579654 None:intergenic 40.0%
TTTCTTAATCGAACCGTGCA+AGG + chr2.1:9579058-9579077 None:intergenic 40.0%
TTTGACGAGGAAACAGAATC+GGG - chr2.1:9580485-9580504 MS.gene54834:CDS 40.0%
! AGTCATTTGTGGGTTGCAAA+AGG - chr2.1:9579223-9579242 MS.gene54834:intron 40.0%
! CACATTCTTCAATTTTGCCC+TGG + chr2.1:9579377-9579396 None:intergenic 40.0%
! GGAATTTGAAATCCAGGTGA+AGG - chr2.1:9579566-9579585 MS.gene54834:CDS 40.0%
! TAAACTCCTCCTCTTTTGAC+TGG + chr2.1:9580154-9580173 None:intergenic 40.0%
!! AAAAGAAGCATTTCGAGAGC+AGG - chr2.1:9580075-9580094 MS.gene54834:CDS 40.0%
!! GAAGAGTTTTGATAGCCAAG+TGG - chr2.1:9579743-9579762 MS.gene54834:CDS 40.0%
AGAATTCGAAGGCCATGTGA+AGG - chr2.1:9579872-9579891 MS.gene54834:CDS 45.0%
AGCACACCTCTATTTGATGG+AGG - chr2.1:9579419-9579438 MS.gene54834:intron 45.0%
CGTTATCATCATACGGTGCT+GGG + chr2.1:9579092-9579111 None:intergenic 45.0%
CTCCCTCATATGTGTAGATC+AGG + chr2.1:9580587-9580606 None:intergenic 45.0%
CTGATTCCAACTCCTTCACT+CGG + chr2.1:9580055-9580074 None:intergenic 45.0%
GAAGCTCGCAAGAAAATCCA+GGG - chr2.1:9579357-9579376 MS.gene54834:intron 45.0%
GAAGGAGGAATTCAAAGGTC+AGG - chr2.1:9580202-9580221 MS.gene54834:CDS 45.0%
GAAGGAGTTCCAGTCAAAAG+AGG - chr2.1:9580142-9580161 MS.gene54834:CDS 45.0%
GCATTTCGAAAGGCAAGTGA+AGG - chr2.1:9579524-9579543 MS.gene54834:CDS 45.0%
GCCTTTGATCACAAGTGTCA+GGG - chr2.1:9580999-9581018 MS.gene54834:CDS 45.0%
GTCCAGTGTTCAACATGTGT+CGG + chr2.1:9580977-9580996 None:intergenic 45.0%
GTGATTTGAACTCCTCCACT+TGG + chr2.1:9579761-9579780 None:intergenic 45.0%
TAGAGAAGCAACATGAAGGC+CGG - chr2.1:9579655-9579674 MS.gene54834:CDS 45.0%
TAGATTCCAGCTCCTTCACA+TGG + chr2.1:9579887-9579906 None:intergenic 45.0%
TCGTTATCATCATACGGTGC+TGG + chr2.1:9579093-9579112 None:intergenic 45.0%
TCTGATGCTTGTGTCTGTGT+TGG + chr2.1:9580873-9580892 None:intergenic 45.0%
TGAATTTGAAGGCCGAGTGA+AGG - chr2.1:9580040-9580059 MS.gene54834:CDS 45.0%
! GGAAGCACACCTCTATTTGA+TGG - chr2.1:9579416-9579435 MS.gene54834:intron 45.0%
! GTTATCATCATACGGTGCTG+GGG + chr2.1:9579091-9579110 None:intergenic 45.0%
! TCATTTTGCTGGGACTGTTG+TGG - chr2.1:9581053-9581072 MS.gene54834:CDS 45.0%
!! GAGTTTTGATAGCCAAGTGG+AGG - chr2.1:9579746-9579765 MS.gene54834:CDS 45.0%
AGAGAAGCAACATGAAGGCC+GGG - chr2.1:9579656-9579675 MS.gene54834:CDS 50.0%
CACAAGTGTCAGGGCTATAG+AGG - chr2.1:9581008-9581027 MS.gene54834:CDS 50.0%
CACCGACACATGTTGAACAC+TGG - chr2.1:9580972-9580991 MS.gene54834:CDS 50.0%
CATTCACTAGCTCCTTCACC+TGG + chr2.1:9579581-9579600 None:intergenic 50.0%
CGAAGCTCGCAAGAAAATCC+AGG - chr2.1:9579356-9579375 MS.gene54834:intron 50.0%
CGCCTTTGATCACAAGTGTC+AGG - chr2.1:9580998-9581017 MS.gene54834:CDS 50.0%
GAAAATCGATGGCCGAGCAA+AGG - chr2.1:9579998-9580017 MS.gene54834:CDS 50.0%
GCATTTCGAAGGCCGAATGA+AGG - chr2.1:9579620-9579639 MS.gene54834:CDS 50.0%
GCCCTGACACTTGTGATCAA+AGG + chr2.1:9581003-9581022 None:intergenic 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG - chr2.1:9580145-9580164 MS.gene54834:CDS 50.0%
TGAAGAGCAAGTGAAGGAGC+TGG - chr2.1:9579710-9579729 MS.gene54834:CDS 50.0%
TTGATCCATGCTCCTTCACC+CGG + chr2.1:9579677-9579696 None:intergenic 50.0%
! GAAGCAACTTGATGGACGAG+TGG - chr2.1:9579827-9579846 MS.gene54834:CDS 50.0%
GCATTTCGAGAGCAGGCTGA+AGG - chr2.1:9580082-9580101 MS.gene54834:CDS 55.0%
TGAAGGCCGAGTGAAGGAGT+TGG - chr2.1:9580046-9580065 MS.gene54834:CDS 55.0%
CGAAGGCCATGTGAAGGAGC+TGG - chr2.1:9579878-9579897 MS.gene54834:CDS 60.0%
GCAACATGAAGGCCGGGTGA+AGG - chr2.1:9579662-9579681 MS.gene54834:CDS 60.0%
GAAGGCCGGGTGAAGGAGCA+TGG - chr2.1:9579669-9579688 MS.gene54834:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9578769 9581176 9578769 ID=MS.gene54834
chr2.1 mRNA 9578769 9581176 9578769 ID=MS.gene54834.t1;Parent=MS.gene54834
chr2.1 exon 9579439 9581176 9579439 ID=MS.gene54834.t1.exon1;Parent=MS.gene54834.t1
chr2.1 CDS 9579439 9581176 9579439 ID=cds.MS.gene54834.t1;Parent=MS.gene54834.t1
chr2.1 exon 9578769 9578833 9578769 ID=MS.gene54834.t1.exon2;Parent=MS.gene54834.t1
chr2.1 CDS 9578769 9578833 9578769 ID=cds.MS.gene54834.t1;Parent=MS.gene54834.t1
Gene Sequence

>MS.gene54834

ATGATGGGTTTTGAGGCTTCTGATAAATCAAAGTTTTGTGTTGGTGATGCTGATGAAGAACCTTTCAATTTTAAATGGCTTGCATCATTTGATAAAAAAACATCGCATTCAGCTTCATGTGAAGACTTTGAATCTGAAGGTGATGATGACGTTCCTTTGTCAGCAATGATTCCTCAGATTATGGGTTTGAGAACATGTAATAATAACAATAATGGTTCTGTTAAGAAGAGGGATACTACTGGTAATACACTACCAGTTAAAAGGATGTTAATTGATAACAACAATGCCTTGCACGGTTCGATTAAGAAATCAAAGGTGTCCCCAGCACCGTATGATGATAACGACGATGACAATGATGACGACAATATTCCTATTTCGTCAAGAATTAAAATGGCTGAGATGTCAAGTGATAAATCATTTTTCTTGCTGAAGAAAGAACTCACATTGGTAGAAAAGTCATTTGTGGGTTGCAAAAGGAAGAGACAAGTAGAAGAGAAGAGATTGCAGTCCATAAAGAAAGAGATTGAGGAGTGCTGCGAAGATCTTGAAAATAAGAAAAAGGAAATTATTTATGTTGGAAGTATTGACGAAGCTCGCAAGAAAATCCAGGGCAAAATTGAAGAATGTGTCAAGGATTTTGTAGCAAAGGAAGCACACCTCTATTTGATGGAGGACTTGATTGGAGAGTGCAAGCAAGAACTCAAGACAAAAGAGATAGAACTTCATCAAGTCAAGGATAACATTTCAAAACAGAAGCATTTCGAAAGGCAAGTGAAGGAATTTGAATCAAAAGAGAAGGAATTTGAAATCCAGGTGAAGGAGCTAGTGAATGATTTGATAACAAAACAGAAGCATTTCGAAGGCCGAATGAAGGAGCTTGAGTCAATAGAGAAGCAACATGAAGGCCGGGTGAAGGAGCATGGATCAAAAAAGAGAGATTTTGAAGAGCAAGTGAAGGAGCTGGAATCTAAAAAGAAGAGTTTTGATAGCCAAGTGGAGGAGTTCAAATCACAACAGAGGCAATTGAAAGGACAAGTTAAGGAACTTGAGTATAAAGAGAAGCAACTTGATGGACGAGTGGAAGAGCATGAATCAAAAAATAGAGAATTCGAAGGCCATGTGAAGGAGCTGGAATCTAAAAAGAAGTGTTTTGAAAGTCAAGTTGAGGAGCTCAAATCAAAAGAGAGACAATTGAAAGGACAAGTTAAGGAACTTGAGTGTAAAGAGAAGAAAATCGATGGCCGAGCAAAGGAGTTTGAATCAAAAGAGGATGAATTTGAAGGCCGAGTGAAGGAGTTGGAATCAGAAAAGAAGCATTTCGAGAGCAGGCTGAAGGAGCTCGAATCAAAAGAAAAGCAATTTGAAGGACAAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAGTTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTCAAAGGTCAGGTTAAGCAGCTCAATTTAAAAAAGCAGCAATTTGAAAGCCAGGTTGAGTACTTAAAATCAAAAGAGAAGCAATTTGAAGAACAGCGGAAAGAATTTGAGGCTGAAGAGAATAAGTTCAAAGTACTAGGGAAAGAGCTCAAGTTAAAAGACAAGCAATTTGAAGGACAAGTCAAGGATCCAGAGTCAAAGCTTAATAAATTTGATGGACAAGTGAAGGAGCCTGAGTTGACAGTGAAACAATATGAACCATTAATGAACTATTTTGACGAGGAAACAGAATCGGGTAAATGTTCTTGTTCATTTAGCTTATTGAAAATTTCATTTCAACAATTTCTTTTAATGATGTGTTATTTTTTATAACCTGATCTACACATATGAGGGAGCTTAAAGGTAGGAATTAAGTCCAAAATATATGTGTGAACTTGGAGTTAGTATTCAAAAGATGAATATGAAACTTAATGATGAAGTTGATGTTCTATTTCTCACATTTTTGCTTGTTATATATCCGATGACTATATATCCACTGATGAAATGATACATGGTCTCTGTCTGGAACAAGAAAAACACACAAGTTTGTTATTTCCCTATTTGGATTCTGTTGTTTGCCATGCTTTTTCATATTTTGTGTGTTCTCATCTATGAAGCACCAACACAGACACAAGCATCAGATACGACATTAACACGTCGACATTTGTATTAATTTAAGAAAATGAATTAATTGAATGTAATCACACGTGTCGGTGTTGAACACCGACACATGTTGAACACTGGACGCGCCTTTGATCACAAGTGTCAGGGCTATAGAGGTTATGACTCATTTCATTGGTACTCATTTTGCTGGGACTGTTGTGGATTGATGATTGACACACATGATTTCTTCTATTTCAGGTTGGAAAAGAATCTTATACAAGTTTTGCCCTTCTCAATTATCCAAAGTATTTAAAGGAATGTGA
Protein sequence

>MS.gene54834.t1

MMGFEASDKSKFCVGDADEEPFNFKWLASFDKKTSHSASCEDFESEGDDDVPLSAMIPQIMGLRTCNNNNNGSVKKRDTTGNTLPVKRMLIDNNNALHGSIKKSKVSPAPYDDNDDDNDDDNIPISSRIKMAEMSSDKSFFLLKKELTLVEKSFVGCKRKRQVEEKRLQSIKKEIEECCEDLENKKKEIIYVGSIDEARKKIQGKIEECVKDFVAKEAHLYLMEDLIGECKQELKTKEIELHQVKDNISKQKHFERQVKEFESKEKEFEIQVKELVNDLITKQKHFEGRMKELESIEKQHEGRVKEHGSKKRDFEEQVKELESKKKSFDSQVEEFKSQQRQLKGQVKELEYKEKQLDGRVEEHESKNREFEGHVKELESKKKCFESQVEELKSKERQLKGQVKELECKEKKIDGRAKEFESKEDEFEGRVKELESEKKHFESRLKELESKEKQFEGQVKEFQSKEEEFKGQVKEFESKKEEFKGQVKQLNLKKQQFESQVEYLKSKEKQFEEQRKEFEAEENKFKVLGKELKLKDKQFEGQVKDPESKLNKFDGQVKEPELTVKQYEPLMNYFDEETESGWKRILYKFCPSQLSKVFKGM