Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060320.t1 | XP_003594883.2 | 93.9 | 424 | 26 | 0 | 13 | 436 | 68 | 491 | 2.50E-225 | 791.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060320.t1 | O49432 | 53.9 | 425 | 172 | 6 | 17 | 436 | 74 | 479 | 5.0e-118 | 426.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060320.t1 | G7INF1 | 93.9 | 424 | 26 | 0 | 13 | 436 | 65 | 488 | 1.8e-225 | 791.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054185 | MS.gene060320 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene060320 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene060320 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene060320 | MS.gene066856 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene060320 | MS.gene067461 | 0.815467 | 9.11E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene073458 | 0.9449 | 8.32E-104 | -1.69E-46 |
| MS.gene060320 | MS.gene08514 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene060320 | MS.gene35428 | 0.815809 | 7.64E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene35695 | 0.815282 | 1.00E-51 | -1.69E-46 |
| MS.gene060320 | MS.gene38528 | 0.84982 | 2.53E-60 | -1.69E-46 |
| MS.gene060320 | MS.gene42107 | 0.817856 | 2.65E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene45085 | 0.806144 | 9.49E-50 | -1.69E-46 |
| MS.gene060320 | MS.gene54834 | 0.814507 | 1.49E-51 | -1.69E-46 |
| MS.gene060320 | MS.gene57471 | 0.938356 | 7.70E-99 | -1.69E-46 |
| MS.gene060320 | MS.gene57472 | 0.806679 | 7.32E-50 | -1.69E-46 |
| MS.gene060320 | MS.gene58684 | 0.932113 | 1.39E-94 | -1.69E-46 |
| MS.gene060320 | MS.gene62720 | 0.810895 | 9.18E-51 | -1.69E-46 |
| MS.gene060320 | MS.gene67002 | 0.809692 | 1.67E-50 | -1.69E-46 |
| MS.gene060320 | MS.gene67384 | 0.82943 | 5.17E-55 | -1.69E-46 |
| MS.gene060320 | MS.gene86114 | 0.825357 | 4.90E-54 | -1.69E-46 |
| MS.gene060320 | MS.gene86987 | 0.824572 | 7.51E-54 | -1.69E-46 |
| MS.gene060320 | MS.gene90015 | 0.81775 | 2.80E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene91762 | 0.815989 | 6.97E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene97857 | 0.815757 | 7.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060320.t1 | MTR_2g035790 | 90.828 | 447 | 30 | 1 | 1 | 436 | 42 | 488 | 0.0 | 790 |
| MS.gene060320.t1 | MTR_4g094732 | 71.230 | 431 | 119 | 3 | 9 | 436 | 52 | 480 | 0.0 | 614 |
| MS.gene060320.t1 | MTR_2g035760 | 52.542 | 413 | 178 | 7 | 17 | 424 | 82 | 481 | 1.36e-140 | 411 |
| MS.gene060320.t1 | MTR_6g015785 | 52.336 | 428 | 180 | 8 | 13 | 436 | 83 | 490 | 4.24e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060320.t1 | AT4G20040 | 63.615 | 426 | 148 | 5 | 13 | 436 | 63 | 483 | 0.0 | 548 |
| MS.gene060320.t1 | AT4G20050 | 53.882 | 425 | 172 | 6 | 17 | 436 | 74 | 479 | 7.08e-149 | 432 |
| MS.gene060320.t1 | AT4G20050 | 53.882 | 425 | 172 | 6 | 17 | 436 | 74 | 479 | 7.08e-149 | 432 |
| MS.gene060320.t1 | AT4G20050 | 53.882 | 425 | 172 | 6 | 17 | 436 | 74 | 479 | 7.08e-149 | 432 |
| MS.gene060320.t1 | AT4G20050 | 53.882 | 425 | 172 | 6 | 17 | 436 | 74 | 479 | 7.08e-149 | 432 |
| MS.gene060320.t1 | AT4G20050 | 53.882 | 425 | 172 | 6 | 17 | 436 | 99 | 504 | 9.55e-149 | 432 |
| MS.gene060320.t1 | AT4G20050 | 53.500 | 400 | 162 | 6 | 42 | 436 | 1 | 381 | 3.55e-137 | 399 |
| MS.gene060320.t1 | AT4G20050 | 53.500 | 400 | 162 | 6 | 42 | 436 | 1 | 381 | 3.55e-137 | 399 |
Find 85 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATATTGATAATTT+AGG | 0.107857 | 2.4:-53491635 | MS.gene060320:CDS |
| ACAATTGGAACATTATTATT+AGG | 0.129299 | 2.4:+53489012 | None:intergenic |
| TCAATTAAAGGGAAAGTTTA+TGG | 0.147921 | 2.4:-53489069 | MS.gene060320:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | 2.4:+53491707 | None:intergenic |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | 2.4:-53491634 | MS.gene060320:CDS |
| GTTCCAATTGTGAAATTAGA+TGG | 0.269638 | 2.4:-53489000 | MS.gene060320:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | 2.4:-53489741 | MS.gene060320:intron |
| CAATTGGAACATTATTATTA+GGG | 0.285274 | 2.4:+53489013 | None:intergenic |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | 2.4:-53489243 | MS.gene060320:CDS |
| ATTGTTAACAATATGTTTAG+TGG | 0.301676 | 2.4:-53489039 | MS.gene060320:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.302520 | 2.4:+53488838 | None:intergenic |
| CAGCCATAGGAATTGTTGTT+AGG | 0.306110 | 2.4:-53489299 | MS.gene060320:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | 2.4:-53488891 | MS.gene060320:CDS |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | 2.4:+53489713 | None:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | 2.4:+53489439 | None:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | 2.4:+53491599 | None:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | 2.4:-53489249 | MS.gene060320:CDS |
| TAATTCCTTCGGTGGTGAAA+TGG | 0.411730 | 2.4:+53489475 | None:intergenic |
| ACTTTGAACTTTAATTCCTT+CGG | 0.420815 | 2.4:+53489464 | None:intergenic |
| TTCGTAACATGAACTTGAAC+AGG | 0.426663 | 2.4:+53489129 | None:intergenic |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.430783 | 2.4:+53489620 | None:intergenic |
| AATTCATTGTTCAACAAAGA+AGG | 0.431005 | 2.4:+53488705 | None:intergenic |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | 2.4:+53488790 | None:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | 2.4:+53489431 | None:intergenic |
| AGCTTCTACAGCTTTCATAA+TGG | 0.438110 | 2.4:+53491658 | None:intergenic |
| AAGTATGGTGCAGATCCAAC+AGG | 0.439437 | 2.4:-53491701 | MS.gene060320:CDS |
| ATATTCATTTCATGCATTAG+AGG | 0.439787 | 2.4:-53488815 | MS.gene060320:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | 2.4:+53491708 | None:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | 2.4:-53491530 | MS.gene060320:CDS |
| AGATTACTTGAACAAACAAT+AGG | 0.463517 | 2.4:-53489612 | MS.gene060320:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | 2.4:-53491534 | MS.gene060320:CDS |
| AGCCATAGGAATTGTTGTTA+GGG | 0.472547 | 2.4:-53489298 | MS.gene060320:CDS |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.473042 | 2.4:-53488736 | MS.gene060320:CDS |
| TTCCAATTGTGAAATTAGAT+GGG | 0.473930 | 2.4:-53488999 | MS.gene060320:CDS |
| AAGGAAACAACCCCATGAAC+TGG | 0.475950 | 2.4:+53488724 | None:intergenic |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | 2.4:-53491602 | MS.gene060320:CDS |
| TCCCCTAACAACAATTCCTA+TGG | 0.501817 | 2.4:+53489296 | None:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.507592 | 2.4:-53488814 | MS.gene060320:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | 2.4:-53489178 | MS.gene060320:CDS |
| GTCAAATAATGTTGTAGTTG+TGG | 0.512201 | 2.4:-53488758 | MS.gene060320:CDS |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | 2.4:-53491617 | MS.gene060320:CDS |
| TTCCTCCATTTCACCACCGA+AGG | 0.521417 | 2.4:-53489480 | MS.gene060320:CDS |
| TCAACAAGGTGTCTATCAGT+TGG | 0.524915 | 2.4:+53489690 | None:intergenic |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | 2.4:-53491716 | MS.gene060320:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | 2.4:+53491521 | None:intergenic |
| CTTGGACAACACTCAACAGT+CGG | 0.527472 | 2.4:-53489411 | MS.gene060320:CDS |
| GTTCAAGTTCATGTTACGAA+TGG | 0.528355 | 2.4:-53489126 | MS.gene060320:CDS |
| GATTCAAGTTACCGAGGTGG+AGG | 0.539152 | 2.4:-53489549 | MS.gene060320:CDS |
| TTGAACTTTAATTCCTTCGG+TGG | 0.542054 | 2.4:+53489467 | None:intergenic |
| ATTGATATGAACAATGTGAT+TGG | 0.543536 | 2.4:-53488949 | MS.gene060320:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | 2.4:-53488887 | MS.gene060320:CDS |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | 2.4:-53488890 | MS.gene060320:CDS |
| GGATTATAATTCTATAGTCA+TGG | 0.563335 | 2.4:-53489157 | MS.gene060320:CDS |
| AAAGTGAGAAACCAGTTCAT+GGG | 0.566325 | 2.4:-53488735 | MS.gene060320:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | 2.4:-53491519 | MS.gene060320:intron |
| TCAACAGTCGGCGGAGACAA+AGG | 0.569193 | 2.4:-53489399 | MS.gene060320:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | 2.4:-53491735 | MS.gene060320:intron |
| TTCCTTCGGTGGTGAAATGG+AGG | 0.577526 | 2.4:+53489478 | None:intergenic |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | 2.4:+53491533 | None:intergenic |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | 2.4:-53491599 | MS.gene060320:CDS |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | 2.4:-53489276 | MS.gene060320:CDS |
| ATTTAGTGACATTGATCAAG+TGG | 0.593403 | 2.4:-53488974 | MS.gene060320:CDS |
| TCCAATTGTGAAATTAGATG+GGG | 0.603106 | 2.4:-53488998 | MS.gene060320:CDS |
| CTCGGTAACTTGAATCGAAG+AGG | 0.611266 | 2.4:+53489556 | None:intergenic |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | 2.4:+53491532 | None:intergenic |
| AATTAATGATAACACCTCCA+AGG | 0.615034 | 2.4:+53491585 | None:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | 2.4:-53488901 | MS.gene060320:CDS |
| AACCGTTGGGAAGTTGAATG+TGG | 0.628722 | 2.4:-53488911 | MS.gene060320:CDS |
| TGCTGAGAAAATTGCAACAT+CGG | 0.630023 | 2.4:+53489320 | None:intergenic |
| GTGTGAAGATGGCTGAGACA+TGG | 0.634929 | 2.4:+53492029 | None:intergenic |
| TTCGATTCAAGTTACCGAGG+TGG | 0.636613 | 2.4:-53489552 | MS.gene060320:CDS |
| GCCATAGGAATTGTTGTTAG+GGG | 0.637301 | 2.4:-53489297 | MS.gene060320:CDS |
| CCAATTGTGAAATTAGATGG+GGG | 0.638303 | 2.4:-53488997 | MS.gene060320:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | 2.4:-53488886 | MS.gene060320:CDS |
| AGTATGGTGCAGATCCAACA+GGG | 0.649273 | 2.4:-53491700 | MS.gene060320:CDS |
| ATCCACATTCAACTTCCCAA+CGG | 0.649744 | 2.4:+53488909 | None:intergenic |
| TTGATGCATTTAATTCAACA+AGG | 0.650431 | 2.4:+53489676 | None:intergenic |
| AAGTGAGAAACCAGTTCATG+GGG | 0.654495 | 2.4:-53488734 | MS.gene060320:CDS |
| GTTGGGAAGTTGAATGTGGA+TGG | 0.656072 | 2.4:-53488907 | MS.gene060320:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.662811 | 2.4:-53489462 | MS.gene060320:CDS |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | 2.4:-53489738 | MS.gene060320:intron |
| CTCTTCGATTCAAGTTACCG+AGG | 0.668555 | 2.4:-53489555 | MS.gene060320:CDS |
| GGACAACACTCAACAGTCGG+CGG | 0.701448 | 2.4:-53489408 | MS.gene060320:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | 2.4:+53489538 | None:intergenic |
| GTATGGTGCAGATCCAACAG+GGG | 0.763386 | 2.4:-53491699 | MS.gene060320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAAATATTTATTTAT+AGG | + | chr2.4:53489844-53489863 | None:intergenic | 10.0% |
| !! | CTAATTTATATAACAAATTA+AGG | + | chr2.4:53489353-53489372 | None:intergenic | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | - | chr2.4:53490467-53490486 | MS.gene060320:intron | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | - | chr2.4:53490140-53490159 | MS.gene060320:intron | 10.0% |
| !!! | GAATTTTTTTTTTTTGAATA+AGG | - | chr2.4:53490332-53490351 | MS.gene060320:intron | 10.0% |
| !!! | TTTTGATAATATTTATTAAG+AGG | - | chr2.4:53489745-53489764 | MS.gene060320:intron | 10.0% |
| !!! | TTTTTTTTGATGATTTTAAT+TGG | - | chr2.4:53488803-53488822 | MS.gene060320:CDS | 10.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | + | chr2.4:53489709-53489728 | None:intergenic | 15.0% |
| !! | AAATCATAACATAACAATAT+TGG | - | chr2.4:53490881-53490900 | MS.gene060320:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | + | chr2.4:53490965-53490984 | None:intergenic | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | + | chr2.4:53489708-53489727 | None:intergenic | 15.0% |
| !!! | ATTGTTTTGAAATCAATTAA+AGG | - | chr2.4:53491666-53491685 | MS.gene060320:CDS | 15.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | - | chr2.4:53489113-53489132 | MS.gene060320:CDS | 15.0% |
| !!! | CATTTTATACAATGAAAAAA+AGG | + | chr2.4:53488949-53488968 | None:intergenic | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | - | chr2.4:53490256-53490275 | MS.gene060320:intron | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | - | chr2.4:53489859-53489878 | MS.gene060320:intron | 15.0% |
| !!! | TTGTTTTGAAATCAATTAAA+GGG | - | chr2.4:53491667-53491686 | MS.gene060320:CDS | 15.0% |
| !! | AATCATCAAAAAAAATTCCT+AGG | + | chr2.4:53488798-53488817 | None:intergenic | 20.0% |
| !! | ACAATTGGAACATTATTATT+AGG | + | chr2.4:53491738-53491757 | None:intergenic | 20.0% |
| !! | ACATCTACTTTAATAGTTTA+TGG | - | chr2.4:53490722-53490741 | MS.gene060320:intron | 20.0% |
| !! | ATTGTTAACAATATGTTTAG+TGG | - | chr2.4:53491708-53491727 | MS.gene060320:CDS | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | + | chr2.4:53491737-53491756 | None:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | - | chr2.4:53490098-53490117 | MS.gene060320:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | - | chr2.4:53491569-53491588 | MS.gene060320:CDS | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAA+AGG | + | chr2.4:53490541-53490560 | None:intergenic | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | + | chr2.4:53489707-53489726 | None:intergenic | 20.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | - | chr2.4:53489112-53489131 | MS.gene060320:CDS | 20.0% |
| ! | AAAAAAAATTCCTAGGAAGA+AGG | + | chr2.4:53488791-53488810 | None:intergenic | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | chr2.4:53490828-53490847 | MS.gene060320:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr2.4:53490847-53490828 | None:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | + | chr2.4:53491319-53491338 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | - | chr2.4:53489557-53489576 | MS.gene060320:CDS | 25.0% |
| ! | ACTTTGAACTTTAATTCCTT+CGG | + | chr2.4:53491286-53491305 | None:intergenic | 25.0% |
| ! | AGATTACTTGAACAAACAAT+AGG | - | chr2.4:53491135-53491154 | MS.gene060320:intron | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | + | chr2.4:53490597-53490616 | None:intergenic | 25.0% |
| ! | ATATTCATTTCATGCATTAG+AGG | - | chr2.4:53491932-53491951 | MS.gene060320:intron | 25.0% |
| ! | ATTGATATGAACAATGTGAT+TGG | - | chr2.4:53491798-53491817 | MS.gene060320:intron | 25.0% |
| ! | CATAACATAACAATATTGGA+GGG | - | chr2.4:53490885-53490904 | MS.gene060320:intron | 25.0% |
| ! | GGATTATAATTCTATAGTCA+TGG | - | chr2.4:53491590-53491609 | MS.gene060320:CDS | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | - | chr2.4:53489556-53489575 | MS.gene060320:CDS | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | - | chr2.4:53491933-53491952 | MS.gene060320:intron | 25.0% |
| ! | TCAATTAAAGGGAAAGTTTA+TGG | - | chr2.4:53491678-53491697 | MS.gene060320:CDS | 25.0% |
| ! | TCATAACATAACAATATTGG+AGG | - | chr2.4:53490884-53490903 | MS.gene060320:intron | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | + | chr2.4:53491912-53491931 | None:intergenic | 25.0% |
| ! | TTCCAATTGTGAAATTAGAT+GGG | - | chr2.4:53491748-53491767 | MS.gene060320:intron | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | - | chr2.4:53490440-53490459 | MS.gene060320:intron | 25.0% |
| ! | TTGATGCATTTAATTCAACA+AGG | + | chr2.4:53491074-53491093 | None:intergenic | 25.0% |
| !! | ATATTATTTTCCTTCTTCCT+AGG | - | chr2.4:53488778-53488797 | MS.gene060320:CDS | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | - | chr2.4:53490787-53490806 | MS.gene060320:intron | 25.0% |
| !! | CATTTTTCTAACATTGTTTG+AGG | - | chr2.4:53488874-53488893 | MS.gene060320:CDS | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | + | chr2.4:53489887-53489906 | None:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | - | chr2.4:53491318-53491337 | MS.gene060320:intron | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | + | chr2.4:53489679-53489698 | None:intergenic | 25.0% |
| !!! | ATCAGTAGATATTTTTGAAG+AGG | - | chr2.4:53490310-53490329 | MS.gene060320:intron | 25.0% |
| !!! | ATGTTTTGGTATTTCCTAAT+AGG | - | chr2.4:53491895-53491914 | MS.gene060320:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | - | chr2.4:53490823-53490842 | MS.gene060320:intron | 25.0% |
| !!! | GGTGTTATCATTAATTTTCA+AGG | - | chr2.4:53489169-53489188 | MS.gene060320:CDS | 25.0% |
| !!! | GTTATCATTAATTTTCAAGG+TGG | - | chr2.4:53489172-53489191 | MS.gene060320:CDS | 25.0% |
| !!! | TTAACTCTTAACTTGTTTTC+TGG | + | chr2.4:53489546-53489565 | None:intergenic | 25.0% |
| !!! | TTACGAATGGTTTTTTCTTA+GGG | - | chr2.4:53491634-53491653 | MS.gene060320:CDS | 25.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | + | chr2.4:53491037-53491056 | None:intergenic | 30.0% | |
| AATTAATGATAACACCTCCA+AGG | + | chr2.4:53489165-53489184 | None:intergenic | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr2.4:53490832-53490851 | MS.gene060320:intron | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+TGG | + | chr2.4:53490851-53490832 | None:intergenic | 30.0% | |
| ATCAATCAAAGTAGTAAAGG+AGG | + | chr2.4:53489289-53489308 | None:intergenic | 30.0% | |
| ATTAAAGTAGATGTGACCTT+TGG | + | chr2.4:53490716-53490735 | None:intergenic | 30.0% | |
| ATTCACATGTGATAAACCAA+AGG | - | chr2.4:53490697-53490716 | MS.gene060320:intron | 30.0% | |
| ATTTAGTGACATTGATCAAG+TGG | - | chr2.4:53491773-53491792 | MS.gene060320:intron | 30.0% | |
| CATTGTTATAACAAAGCAAC+AGG | - | chr2.4:53491498-53491517 | MS.gene060320:intron | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | - | chr2.4:53491285-53491304 | MS.gene060320:intron | 30.0% | |
| GTCAAATAATGTTGTAGTTG+TGG | - | chr2.4:53491989-53492008 | MS.gene060320:intron | 30.0% | |
| GTTCCAATTGTGAAATTAGA+TGG | - | chr2.4:53491747-53491766 | MS.gene060320:intron | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | + | chr2.4:53491311-53491330 | None:intergenic | 30.0% | |
| TCCAATTGTGAAATTAGATG+GGG | - | chr2.4:53491749-53491768 | MS.gene060320:intron | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | - | chr2.4:53490014-53490033 | MS.gene060320:intron | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | + | chr2.4:53489292-53489311 | None:intergenic | 30.0% | |
| TGGAGTTATTAAGAAATTGC+AGG | + | chr2.4:53489952-53489971 | None:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | + | chr2.4:53489972-53489991 | None:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | + | chr2.4:53491130-53491149 | None:intergenic | 30.0% | |
| ! | AAAGGTGAAAGACAATTTTC+GGG | - | chr2.4:53491366-53491385 | MS.gene060320:intron | 30.0% |
| ! | ACTTTTACATCAATGACCAA+AGG | - | chr2.4:53490999-53491018 | MS.gene060320:intron | 30.0% |
| ! | AGAACTCGAAAAAAGTACAA+GGG | - | chr2.4:53489508-53489527 | MS.gene060320:CDS | 30.0% |
| ! | CAAAGGTGAAAGACAATTTT+CGG | - | chr2.4:53491365-53491384 | MS.gene060320:intron | 30.0% |
| ! | GAATTTTGTTGAAGTTAGCA+GGG | - | chr2.4:53491535-53491554 | MS.gene060320:CDS | 30.0% |
| ! | TATAACAAAGCAACAGGTTT+TGG | - | chr2.4:53491504-53491523 | MS.gene060320:intron | 30.0% |
| ! | TTTATGGTGTTTTCCAACAA+GGG | - | chr2.4:53490738-53490757 | MS.gene060320:intron | 30.0% |
| !! | GATTTGTTCATTTTCCAACA+AGG | + | chr2.4:53490076-53490095 | None:intergenic | 30.0% |
| !! | GGGTGATTTTTCAAATGTTT+TGG | - | chr2.4:53491881-53491900 | MS.gene060320:intron | 30.0% |
| !!! | ACCTTTTTTTTGTGTGAAGA+TGG | + | chr2.4:53488732-53488751 | None:intergenic | 30.0% |
| !!! | ATGATTTTAAGATCAACCGT+TGG | - | chr2.4:53491822-53491841 | MS.gene060320:intron | 30.0% |
| !!! | GTTACGAATGGTTTTTTCTT+AGG | - | chr2.4:53491633-53491652 | MS.gene060320:CDS | 30.0% |
| !!! | TACGAATGGTTTTTTCTTAG+GGG | - | chr2.4:53491635-53491654 | MS.gene060320:CDS | 30.0% |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | - | chr2.4:53490599-53490618 | MS.gene060320:intron | 30.0% |
| !!! | TGATTTTAAGATCAACCGTT+GGG | - | chr2.4:53491823-53491842 | MS.gene060320:intron | 30.0% |
| AAAGTGAGAAACCAGTTCAT+GGG | - | chr2.4:53492012-53492031 | MS.gene060320:intron | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | - | chr2.4:53491846-53491865 | MS.gene060320:intron | 35.0% | |
| ACAATCTCATTCTCTCTATG+TGG | - | chr2.4:53488976-53488995 | MS.gene060320:CDS | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | + | chr2.4:53491960-53491979 | None:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | + | chr2.4:53489092-53489111 | None:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | + | chr2.4:53489283-53489302 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr2.4:53490831-53490850 | MS.gene060320:intron | 35.0% | |
| CATCAATGACCAAAGGTAAA+TGG | - | chr2.4:53491006-53491025 | MS.gene060320:intron | 35.0% | |
| CCAATTGTGAAATTAGATGG+GGG | - | chr2.4:53491750-53491769 | MS.gene060320:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | - | chr2.4:53490015-53490034 | MS.gene060320:intron | 35.0% | |
| CTCTCACCAAACAATACTAA+AGG | - | chr2.4:53490013-53490032 | MS.gene060320:intron | 35.0% | |
| GATCTGCACCATACTTAATT+GGG | + | chr2.4:53489042-53489061 | None:intergenic | 35.0% | |
| GATTGGAAAATGAAGAAGAG+TGG | - | chr2.4:53489004-53489023 | MS.gene060320:CDS | 35.0% | |
| GCACAAACCAGACAAAATAA+AGG | - | chr2.4:53490210-53490229 | MS.gene060320:intron | 35.0% | |
| GCCATCTTCACACAAAAAAA+AGG | - | chr2.4:53488728-53488747 | MS.gene060320:CDS | 35.0% | |
| GGATGGAGTAAGATGTTAAA+AGG | + | chr2.4:53490571-53490590 | None:intergenic | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | - | chr2.4:53490016-53490035 | MS.gene060320:intron | 35.0% | |
| TGCTGAGAAAATTGCAACAT+CGG | + | chr2.4:53491430-53491449 | None:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | - | chr2.4:53489130-53489149 | MS.gene060320:CDS | 35.0% | |
| TTCCAGCTACGAAAAAATTG+AGG | + | chr2.4:53489612-53489631 | None:intergenic | 35.0% | |
| TTCGTAACATGAACTTGAAC+AGG | + | chr2.4:53491621-53491640 | None:intergenic | 35.0% | |
| TTGAACTTTAATTCCTTCGG+TGG | + | chr2.4:53491283-53491302 | None:intergenic | 35.0% | |
| TTTCTCAAGTTTACCCTTGT+TGG | + | chr2.4:53490754-53490773 | None:intergenic | 35.0% | |
| ! | AGCCATAGGAATTGTTGTTA+GGG | - | chr2.4:53491449-53491468 | MS.gene060320:intron | 35.0% |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | + | chr2.4:53489995-53490014 | None:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | + | chr2.4:53491107-53491126 | None:intergenic | 35.0% |
| ! | CAGAACTCGAAAAAAGTACA+AGG | - | chr2.4:53489507-53489526 | MS.gene060320:CDS | 35.0% |
| ! | GGAATTTTGTTGAAGTTAGC+AGG | - | chr2.4:53491534-53491553 | MS.gene060320:CDS | 35.0% |
| ! | GTTCAAGTTCATGTTACGAA+TGG | - | chr2.4:53491621-53491640 | MS.gene060320:CDS | 35.0% |
| ! | GTTTATGGTGTTTTCCAACA+AGG | - | chr2.4:53490737-53490756 | MS.gene060320:intron | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | + | chr2.4:53490012-53490031 | None:intergenic | 35.0% |
| ! | TCATTCTCTCTATGTGGTTT+TGG | - | chr2.4:53488982-53489001 | MS.gene060320:CDS | 35.0% |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | + | chr2.4:53491106-53491125 | None:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | + | chr2.4:53491110-53491129 | None:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | + | chr2.4:53490013-53490032 | None:intergenic | 35.0% |
| ! | TTATCTGTTTTGCACTGCTA+AGG | + | chr2.4:53490381-53490400 | None:intergenic | 35.0% |
| ! | TTCATTTTCCAACAAGGCTT+TGG | + | chr2.4:53490070-53490089 | None:intergenic | 35.0% |
| !!! | AACCTCAATTTTTTCGTAGC+TGG | - | chr2.4:53489607-53489626 | MS.gene060320:CDS | 35.0% |
| !!! | AATGGTTTTTTCTTAGGGGA+TGG | - | chr2.4:53491639-53491658 | MS.gene060320:CDS | 35.0% |
| !!! | ACTCTTAACTTGTTTTCTGG+TGG | + | chr2.4:53489543-53489562 | None:intergenic | 35.0% |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | + | chr2.4:53490220-53490239 | None:intergenic | 35.0% |
| !!! | CTCTTAACTTGTTTTCTGGT+GGG | + | chr2.4:53489542-53489561 | None:intergenic | 35.0% |
| AAGGTTCCTCCATTTACCTT+TGG | + | chr2.4:53491018-53491037 | None:intergenic | 40.0% | |
| AAGTGAGAAACCAGTTCATG+GGG | - | chr2.4:53492013-53492032 | MS.gene060320:intron | 40.0% | |
| AATGAAGAAGAGTGGAAGAG+TGG | - | chr2.4:53489012-53489031 | MS.gene060320:CDS | 40.0% | |
| ATCCACATTCAACTTCCCAA+CGG | + | chr2.4:53491841-53491860 | None:intergenic | 40.0% | |
| CAATGACCAAAGGTAAATGG+AGG | - | chr2.4:53491009-53491028 | MS.gene060320:intron | 40.0% | |
| CCCCCATCTAATTTCACAAT+TGG | + | chr2.4:53491753-53491772 | None:intergenic | 40.0% | |
| GAAAGTGAGAAACCAGTTCA+TGG | - | chr2.4:53492011-53492030 | MS.gene060320:intron | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | + | chr2.4:53489043-53489062 | None:intergenic | 40.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | - | chr2.4:53489031-53489050 | MS.gene060320:CDS | 40.0% | |
| TAATTCCTTCGGTGGTGAAA+TGG | + | chr2.4:53491275-53491294 | None:intergenic | 40.0% | |
| TAGCCCCCTTTAGTATTGTT+TGG | + | chr2.4:53490022-53490041 | None:intergenic | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | - | chr2.4:53489213-53489232 | MS.gene060320:CDS | 40.0% | |
| TCCCCTAACAACAATTCCTA+TGG | + | chr2.4:53491454-53491473 | None:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | - | chr2.4:53489145-53489164 | MS.gene060320:CDS | 40.0% | |
| ! | AGCTCTTGGCACAAGTTTTA+AGG | - | chr2.4:53490613-53490632 | MS.gene060320:intron | 40.0% |
| ! | CAGCCATAGGAATTGTTGTT+AGG | - | chr2.4:53491448-53491467 | MS.gene060320:intron | 40.0% |
| ! | GCCATAGGAATTGTTGTTAG+GGG | - | chr2.4:53491450-53491469 | MS.gene060320:intron | 40.0% |
| ! | TCAACAAGGTGTCTATCAGT+TGG | + | chr2.4:53491060-53491079 | None:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | - | chr2.4:53490059-53490078 | MS.gene060320:intron | 40.0% |
| !! | AACAAAGCAACAGGTTTTGG+TGG | - | chr2.4:53491507-53491526 | MS.gene060320:intron | 40.0% |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | + | chr2.4:53490059-53490078 | None:intergenic | 40.0% |
| !! | ACCTCGAAGAGGTTGATATA+CGG | - | chr2.4:53489635-53489654 | MS.gene060320:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | - | chr2.4:53491857-53491876 | MS.gene060320:intron | 40.0% |
| !! | TGGATGGTAATGGCACAAAA+TGG | - | chr2.4:53491856-53491875 | MS.gene060320:intron | 40.0% |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | + | chr2.4:53491100-53491119 | None:intergenic | 40.0% |
| !!! | CTCTCTATGTGGTTTTGGAT+TGG | - | chr2.4:53488987-53489006 | MS.gene060320:CDS | 40.0% |
| AACCGTTGGGAAGTTGAATG+TGG | - | chr2.4:53491836-53491855 | MS.gene060320:intron | 45.0% | |
| AAGGAAACAACCCCATGAAC+TGG | + | chr2.4:53492026-53492045 | None:intergenic | 45.0% | |
| AAGTATGGTGCAGATCCAAC+AGG | - | chr2.4:53489046-53489065 | MS.gene060320:CDS | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | + | chr2.4:53489218-53489237 | None:intergenic | 45.0% | |
| AGTATGGTGCAGATCCAACA+GGG | - | chr2.4:53489047-53489066 | MS.gene060320:CDS | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | - | chr2.4:53489217-53489236 | MS.gene060320:CDS | 45.0% | |
| CGATGAATATTCCTCCACCT+CGG | + | chr2.4:53491212-53491231 | None:intergenic | 45.0% | |
| CTCGGTAACTTGAATCGAAG+AGG | + | chr2.4:53491194-53491213 | None:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | - | chr2.4:53491336-53491355 | MS.gene060320:intron | 45.0% | |
| GCCGATGAAGGAAATGTGAT+GGG | + | chr2.4:53489217-53489236 | None:intergenic | 45.0% | |
| GGACAAGCTAACATGATCAC+AGG | - | chr2.4:53491471-53491490 | MS.gene060320:intron | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | + | chr2.4:53489926-53489945 | None:intergenic | 45.0% | |
| GTTGGGAAGTTGAATGTGGA+TGG | - | chr2.4:53491840-53491859 | MS.gene060320:intron | 45.0% | |
| TCCGTATATCAACCTCTTCG+AGG | + | chr2.4:53489639-53489658 | None:intergenic | 45.0% | |
| ! | CTCTTCGATTCAAGTTACCG+AGG | - | chr2.4:53491192-53491211 | MS.gene060320:intron | 45.0% |
| ! | CTGCTTTCATTTTCCCCTGT+TGG | + | chr2.4:53489064-53489083 | None:intergenic | 45.0% |
| ! | GCAATTTTCTCAGCAGCCAT+AGG | - | chr2.4:53491435-53491454 | MS.gene060320:intron | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | - | chr2.4:53491861-53491880 | MS.gene060320:intron | 45.0% |
| ! | TTCGATTCAAGTTACCGAGG+TGG | - | chr2.4:53491195-53491214 | MS.gene060320:intron | 45.0% |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | - | chr2.4:53491513-53491532 | MS.gene060320:intron | 45.0% |
| !! | TGGTAATGGCACAAAATGGG+TGG | - | chr2.4:53491860-53491879 | MS.gene060320:intron | 45.0% |
| !! | AATTTAAATAAAACATTATT+TGG | + | chr2.4:53489714-53489733 | None:intergenic | 5.0% |
| ACAAGATTGCCAGCCGATGA+AGG | + | chr2.4:53489229-53489248 | None:intergenic | 50.0% | |
| AGCTGGAAAACACCTCGAAG+AGG | - | chr2.4:53489624-53489643 | MS.gene060320:CDS | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | - | chr2.4:53489148-53489167 | MS.gene060320:CDS | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | + | chr2.4:53489920-53489939 | None:intergenic | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | + | chr2.4:53489151-53489170 | None:intergenic | 50.0% | |
| GTATGGTGCAGATCCAACAG+GGG | - | chr2.4:53489048-53489067 | MS.gene060320:CDS | 50.0% | |
| GTGTGAAGATGGCTGAGACA+TGG | + | chr2.4:53488721-53488740 | None:intergenic | 50.0% | |
| TTCCTCCATTTCACCACCGA+AGG | - | chr2.4:53491267-53491286 | MS.gene060320:intron | 50.0% | |
| TTCCTTCGGTGGTGAAATGG+AGG | + | chr2.4:53491272-53491291 | None:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | - | chr2.4:53489917-53489936 | MS.gene060320:intron | 50.0% |
| ! | GATTCAAGTTACCGAGGTGG+AGG | - | chr2.4:53491198-53491217 | MS.gene060320:intron | 50.0% |
| ! | TTCATCGGCTGGCAATCTTG+TGG | - | chr2.4:53489228-53489247 | MS.gene060320:CDS | 50.0% |
| GCTTCTAGGTACAGGCTCAC+TGG | + | chr2.4:53489912-53489931 | None:intergenic | 55.0% | |
| GGACAACACTCAACAGTCGG+CGG | - | chr2.4:53491339-53491358 | MS.gene060320:intron | 55.0% | |
| TCAACAGTCGGCGGAGACAA+AGG | - | chr2.4:53491348-53491367 | MS.gene060320:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 53488708 | 53492061 | 53488708 | ID=MS.gene060320 |
| chr2.4 | mRNA | 53488708 | 53492061 | 53488708 | ID=MS.gene060320.t1;Parent=MS.gene060320 |
| chr2.4 | exon | 53492020 | 53492061 | 53492020 | ID=MS.gene060320.t1.exon1;Parent=MS.gene060320.t1 |
| chr2.4 | CDS | 53492020 | 53492061 | 53492020 | ID=cds.MS.gene060320.t1;Parent=MS.gene060320.t1 |
| chr2.4 | exon | 53491520 | 53491747 | 53491520 | ID=MS.gene060320.t1.exon2;Parent=MS.gene060320.t1 |
| chr2.4 | CDS | 53491520 | 53491747 | 53491520 | ID=cds.MS.gene060320.t1;Parent=MS.gene060320.t1 |
| chr2.4 | exon | 53488708 | 53489748 | 53488708 | ID=MS.gene060320.t1.exon3;Parent=MS.gene060320.t1 |
| chr2.4 | CDS | 53488708 | 53489748 | 53488708 | ID=cds.MS.gene060320.t1;Parent=MS.gene060320.t1 |
| Gene Sequence |
| Protein sequence |
