AlfalfaGEDB | MS.gene55241

M. sativa cultivar XinJiangDaYe / MS.gene55241

KEGG: -
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00861.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55241.t1	XP_003613814.2	92.8	166	12	0	1	166	1	166	3.10E-80	307.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55241.t1	P82195	34.9	146	85	3	22	164	27	165	1.9e-17	90.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55241.t1	G7KFC6	92.8	166	12	0	1	166	1	166	2.3e-80	307.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052176	MS.gene55241	0.808888	2.48E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55241.t1	MTR_5g041290	92.771	166	12	0	1	166	1	166	5.27e-114	320
MS.gene55241.t1	MTR_5g041280	65.152	66	16	1	89	154	11	69	1.29e-22	85.9
MS.gene55241.t1	MTR_2g044920	34.711	121	75	2	46	163	45	164	2.11e-18	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55241.t1	AT1G14205	61.111	162	62	1	5	165	8	169	2.38e-67	202
MS.gene55241.t1	AT1G48350	34.127	126	79	2	41	163	44	168	2.00e-18	78.2

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Find 32 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAAAGATGCAGAAAA+AGG	0.318727	5.2:-30925787	MS.gene55241:intron
AATAACTTACTTATACTTTG+TGG	0.391351	5.2:+30926176	None:intergenic
AATAAGAAGTGCTTATTCTA+TGG	0.305092	5.2:-30925008	MS.gene55241:CDS
AATCAGTTGCATACCTATCT+AGG	0.428417	5.2:+30924672	None:intergenic
ACCAAAACCATTGCGATCAT+AGG	0.452925	5.2:+30924749	None:intergenic
ACCGTTAGTGGCTAAAGCCA+AGG	0.574909	5.2:-30925841	MS.gene55241:CDS
ACTACTTACTGCAGTGCTAC+AGG	0.464722	5.2:+30924950	None:intergenic
ACTTATACTTTGTGGTTGAA+AGG	0.484617	5.2:+30926184	None:intergenic
AGAATAAGCACTTCTTATTT+TGG	0.196854	5.2:+30925012	None:intergenic
AGCTGCTCAACGTGTTGGGG+AGG	0.565535	5.2:-30924817	MS.gene55241:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGAAAGATGCAGAAAA+AGG	-	chr5.2:30925165-30925184	MS.gene55241:intron	30.0%
ACTTATACTTTGTGGTTGAA+AGG	+	chr5.2:30924771-30924790	None:intergenic	30.0%
CAAGAATCCATAATTGGAAA+TGG	+	chr5.2:30926260-30926279	None:intergenic	30.0%
CTATAATTGATTGGATACAC+AGG	-	chr5.2:30924875-30924894	MS.gene55241:intron	30.0%
GAAATCATAGGTATTAGTGT+CGG	-	chr5.2:30924943-30924962	MS.gene55241:intron	30.0%
TTTAGTTAAGAAACCGTTAG+TGG	-	chr5.2:30925099-30925118	MS.gene55241:intron	30.0%
AAAAAAAGGGCAGGATAACA+TGG	+	chr5.2:30925839-30925858	None:intergenic	35.0%
AAACATGCCAGAATCAATTC+TGG	-	chr5.2:30925617-30925636	MS.gene55241:intron	35.0%
AAACCAACTACTGCTAACTA+AGG	+	chr5.2:30925336-30925355	None:intergenic	35.0%
AACTAAGTGTGTGTTTGGTT+GGG	-	chr5.2:30925374-30925393	MS.gene55241:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	30924686	30926288	30924686	ID=MS.gene55241
chr5.2	mRNA	30924686	30926288	30924686	ID=MS.gene55241.t1;Parent=MS.gene55241
chr5.2	exon	30926186	30926288	30926186	ID=MS.gene55241.t1.exon1;Parent=MS.gene55241.t1
chr5.2	CDS	30926186	30926288	30926186	ID=cds.MS.gene55241.t1;Parent=MS.gene55241.t1
chr5.2	exon	30925788	30925876	30925788	ID=MS.gene55241.t1.exon2;Parent=MS.gene55241.t1
chr5.2	CDS	30925788	30925876	30925788	ID=cds.MS.gene55241.t1;Parent=MS.gene55241.t1
chr5.2	exon	30924959	30925111	30924959	ID=MS.gene55241.t1.exon3;Parent=MS.gene55241.t1
chr5.2	CDS	30924959	30925111	30924959	ID=cds.MS.gene55241.t1;Parent=MS.gene55241.t1
chr5.2	exon	30924686	30924841	30924686	ID=MS.gene55241.t1.exon4;Parent=MS.gene55241.t1
chr5.2	CDS	30924686	30924841	30924686	ID=cds.MS.gene55241.t1;Parent=MS.gene55241.t1

Gene Sequence

>MS.gene55241

ATGGTTCTAATGGTGAATTCATTTCAACTATTTCAATTCAATACTTCTTCTTTCTTCGGAGTTATCCCAAAACCATTCATTTCCTTTCAACCACAAAGTATAAGTAAGTTATTAAACATAACTTAAATCTTCCCAATTTGTTTTTTTTTTTTGTGTGATGTGTTTCATGCTTTTCATGTTTTATAAGGTCTATAATTGATTGGATACACAGGACACGACAACACAGTCAATAATATGAGAAAATGACATAATTCAATGAAATCATAGGTATTAGTGTCGGACACGATACATATCCGACCCTGAGACACGCCTTATTCGAGGAGTATATGTGATTCATCATAATATCAATTTTGGTATTGTGTTTAATGTGAATTTTGATAATGCTTGTAGTAAAATTTGAATTTACTTTCAGGTTTAGTTAAGAAACCGTTAGTGGCTAAAGCCAAGGCAAATGCAAGAAAAGAAAGTGCTAAAATTCGAAACAGAAAGATGCAGAAAAAGGTATGTCTTTTGGTTGTTAAATGTGCTGGTGTAATGGCACTGTCTGACATTGACCCGCATCGAACACCAGACACGCTTTTCAGTTAGAAGTTTCAGTGTTGCATAGGTTTGTTGTGTCTACAAACAAGTTTATCACTCATTTTTTTCCTTAGTTAGCAGTAGTTGGTTTCAGTACAAAAGTTCTATGAACTAAGTGTGTGTTTGGTTGGGCAATGGAGATAATTGATTTTGATAGAATTGATTTTGTAGAATTGATTTTGGTTAAAAGTAATTTTTGACTAAAAGTGATTTGTGTTTGGATACATTTATATAAAAATGAGTTGAAATATAAATTTGTATGTGAAAATCAATTCTAGAATCAGAAGCTACAAATCCTAGCTTCAAGGAGAATCAATTCTGGAGGCATAATCAATTATATTCGACATCAACCAAACATGCCAGAATCAATTCTGGTCTCTCTAGAAGTGGAACCAAACATACACTAAATCCATTTTAAATATAAAAATACATAATTTTATAGTATTGTTTAAATATGCTACAGTGGACAAGTTGTTGCTGCATTGATAAAGAACAACTAGATAAAGAACAACTAAGTAGTTGAGTACTTGAGTTACTTCAATTAGCGTTTATCCTCTATCTTTTATTAATACCATGTTATCCTGCCCTTTTTTTTTAGTTTAATGGTACTGCAACACATCCAAGGCTTTCAGTATTTTGCTCAGATAAGCAATTGTATGCAATGCTTGTAGATGACCAAAATAAGAAGTGCTTATTCTATGGAAGCACGCTGCAGAAATCGTTTCAAGAAAATCCTCCCTGTAGCACTGCAGTAAGTAGTCCACCACATTTTAAAGACAGATATTGTATGAGACTGGGTAAACAACTTTTGTTACATTAGACTTTAGCTTTGGATTTTTTCTTATGCTTGGGTGAAATATTGTTTTAGGAAGCTGCTCAACGTGTTGGGGAGGCACTGGTGAAAGCCTGTGTTGATCTAAACATAAATGAAATATCATCCTATGATCGCAATGGTTTTGGTCGTGGAGAAAGGTTAAACGCCTTTGAGATTGCCATTTCCAATTATGGATTCTTGCCTAGATAG

Protein sequence

>MS.gene55241.t1

MVLMVNSFQLFQFNTSSFFGVIPKPFISFQPQSISLVKKPLVAKAKANARKESAKIRNRKMQKKFNGTATHPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSFQENPPCSTAEAAQRVGEALVKACVDLNINEISSYDRNGFGRGERLNAFEIAISNYGFLPR