AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052176


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052176.t1 MTR_3g100620 100.000 252 0 0 1 252 1 252 0.0 515
MS.gene052176.t1 MTR_3g099380 76.793 237 54 1 11 247 8 243 1.45e-135 382
MS.gene052176.t1 MTR_5g064580 75.527 237 57 1 11 247 8 243 8.20e-135 380
MS.gene052176.t1 MTR_0137s0020 73.413 252 62 3 1 251 1 248 6.79e-127 360
MS.gene052176.t1 MTR_3g014060 73.016 252 63 3 1 251 1 248 6.63e-126 357
MS.gene052176.t1 MTR_2g091225 65.289 242 81 1 10 251 6 244 8.22e-116 332
MS.gene052176.t1 MTR_8g086270 65.145 241 81 1 11 251 7 244 1.16e-113 327
MS.gene052176.t1 MTR_5g044160 66.809 235 75 1 11 245 7 238 2.79e-113 326
MS.gene052176.t1 MTR_4g083060 66.383 235 76 1 11 245 7 238 3.28e-112 324
MS.gene052176.t1 MTR_2g015980 64.557 237 80 2 12 248 6 238 3.87e-109 315
MS.gene052176.t1 MTR_2g076960 64.681 235 80 1 11 245 8 239 8.02e-109 315
MS.gene052176.t1 MTR_3g099380 73.096 197 52 1 11 207 8 203 1.61e-105 304
MS.gene052176.t1 MTR_2g091225 67.476 206 67 0 46 251 16 221 1.19e-103 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052176.t1 AT5G10450 84.016 244 39 0 8 251 4 247 1.17e-155 432
MS.gene052176.t1 AT5G65430 82.787 244 42 0 8 251 4 247 2.84e-154 429
MS.gene052176.t1 AT5G10450 84.519 239 37 0 8 246 4 242 8.08e-153 425
MS.gene052176.t1 AT5G10450 84.519 239 37 0 8 246 4 242 2.77e-152 424
MS.gene052176.t1 AT5G10450 84.519 239 37 0 8 246 4 242 3.77e-152 425
MS.gene052176.t1 AT5G65430 83.264 239 40 0 8 246 4 242 2.58e-151 421
MS.gene052176.t1 AT5G65430 83.264 239 40 0 8 246 4 242 1.05e-150 421
MS.gene052176.t1 AT1G35160 73.950 238 61 1 11 248 11 247 1.52e-132 375
MS.gene052176.t1 AT1G78300 73.950 238 61 1 10 247 4 240 5.99e-132 373
MS.gene052176.t1 AT4G09000 73.222 239 63 1 11 249 10 247 1.77e-131 372
MS.gene052176.t1 AT3G02520 73.640 239 62 1 10 248 4 241 2.67e-131 372
MS.gene052176.t1 AT3G02520 73.640 239 62 1 10 248 4 241 2.67e-131 372
MS.gene052176.t1 AT1G35160 74.153 236 60 1 11 246 11 245 8.68e-131 372
MS.gene052176.t1 AT5G38480 73.222 239 63 1 10 248 3 240 1.09e-129 367
MS.gene052176.t1 AT5G38480 72.727 242 65 1 10 251 3 243 4.05e-129 366
MS.gene052176.t1 AT5G38480 72.727 242 65 1 10 251 3 243 4.05e-129 366
MS.gene052176.t1 AT4G09000 73.729 236 61 1 11 246 10 244 4.21e-129 368
MS.gene052176.t1 AT5G16050 73.640 239 62 1 10 248 6 243 2.84e-125 357
MS.gene052176.t1 AT5G16050 73.640 239 62 1 10 248 6 243 2.84e-125 357
MS.gene052176.t1 AT1G26480 67.660 235 73 1 11 245 10 241 1.44e-115 332
MS.gene052176.t1 AT2G42590 63.900 241 84 1 11 251 7 244 4.23e-108 313
MS.gene052176.t1 AT2G42590 64.286 238 82 1 11 248 7 241 9.95e-108 312
MS.gene052176.t1 AT2G42590 64.286 238 82 1 11 248 7 241 1.36e-107 312
MS.gene052176.t1 AT1G34760 63.291 237 84 1 11 247 5 238 4.34e-107 310
MS.gene052176.t1 AT1G34760 63.291 237 84 1 11 247 5 238 4.70e-107 310
MS.gene052176.t1 AT1G22300 63.485 241 85 1 11 251 5 242 1.08e-103 301
MS.gene052176.t1 AT1G22300 63.485 241 85 1 11 251 5 242 1.32e-103 301
MS.gene052176.t1 AT1G22300 63.445 238 84 1 11 248 5 239 1.81e-102 298
MS.gene052176.t1 AT1G78220 43.590 234 128 2 11 243 5 235 6.20e-62 195
MS.gene052176.t1 AT1G22290 40.000 210 105 5 14 221 8 198 5.08e-38 132
MS.gene052176.t1 AT1G22290 39.614 207 104 5 14 218 8 195 2.18e-37 130
MS.gene052176.t1 AT2G10450 68.421 38 12 0 211 248 16 53 2.15e-11 58.9

Find 46 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAGTGTGCTGTCTTTGT+AGG 0.261422 3.2:-83859433 None:intergenic
GAATGTTTGTGGTAGTATTC+TGG 0.294961 3.2:+83857611 MS.gene052176:CDS
GGGTGATTATCATAGGTATT+TGG 0.311976 3.2:+83857704 MS.gene052176:CDS
ACACATACTGTTCTCTGTTT+AGG 0.318322 3.2:-83857323 None:intergenic
ATCAACTCATCCTATAAGAT+TGG 0.331215 3.2:+83857903 MS.gene052176:CDS
TGAGGAAGCAATTGCTGAAC+TGG 0.348492 3.2:+83859392 MS.gene052176:CDS
AGAGCCAAACCCAATCTTAT+AGG 0.362825 3.2:-83857913 None:intergenic
AGCTTGTGACATGGCCAAAC+AGG 0.376909 3.2:+83857981 MS.gene052176:CDS
CGTTAACTCTGATTCAACTT+TGG 0.380898 3.2:-83857589 None:intergenic
TCATCCTATAAGATTGGGTT+TGG 0.386635 3.2:+83857909 MS.gene052176:CDS
TGCTTCTTCAAGTGAAAGTA+AGG 0.390843 3.2:+83857662 MS.gene052176:CDS
CAGATTAACACAAACCTGTT+TGG 0.398433 3.2:-83857995 None:intergenic
TGAGAGACAACCTCACCCTT+TGG 0.419313 3.2:+83859466 MS.gene052176:CDS
TATTTGGCTGAGTTTAAGAT+TGG 0.435348 3.2:+83857720 MS.gene052176:CDS
ATTGCTGAACTGGACACATT+AGG 0.448432 3.2:+83859402 MS.gene052176:CDS
TCAACTCATCCTATAAGATT+GGG 0.451846 3.2:+83857904 MS.gene052176:CDS
TGGTAGTATTCTGGAGTTGT+TGG 0.453677 3.2:+83857620 MS.gene052176:CDS
AGATGAAGGGTGATTATCAT+AGG 0.459315 3.2:+83857697 MS.gene052176:CDS
TCTTGTAAGCGACGGATATG+AGG 0.463010 3.2:-83857458 None:intergenic
CGTTTCTTCGATTGAACAGA+AGG 0.478904 3.2:+83857515 MS.gene052176:CDS
CCTTTGGACTTCTGATGTCC+AGG 0.486316 3.2:+83859482 MS.gene052176:CDS
GTTGTCTTACAAAGCTGCAC+AGG 0.491542 3.2:+83857776 MS.gene052176:CDS
TTCATGCAGAAGCTTGTAGT+GGG 0.493249 3.2:+83857396 MS.gene052176:CDS
AATCTTATAGGATGAGTTGA+TGG 0.494756 3.2:-83857901 None:intergenic
TCAGAGTTAACGAATGTTTG+TGG 0.495537 3.2:+83857600 MS.gene052176:CDS
TCGATTGAACAGAAGGAAGA+AGG 0.502247 3.2:+83857522 MS.gene052176:CDS
GATATCAAGGCTCATCTAGC+TGG 0.506112 3.2:-83859647 None:intergenic
CTTCATGCAGAAGCTTGTAG+TGG 0.529618 3.2:+83857395 MS.gene052176:CDS
CTTTCACTTGAAGAAGCAGA+AGG 0.537834 3.2:-83857657 None:intergenic
CACTACAAGCTTCTGCATGA+AGG 0.552358 3.2:-83857394 None:intergenic
GTCGCTTACAAGAACGTGAT+CGG 0.573437 3.2:+83857468 MS.gene052176:CDS
CAGAGCTTAGCGTCGAAGAG+AGG 0.573495 3.2:+83857433 MS.gene052176:CDS
CTGGACATCAGAAGTCCAAA+GGG 0.585147 3.2:-83859481 None:intergenic
AGCTGAACGCTACGAGGAGA+TGG 0.585286 3.2:+83857368 MS.gene052176:CDS
TCGACGCTAAGCTCTGATGA+TGG 0.586328 3.2:-83857426 None:intergenic
CATCAGAAGTCCAAAGGGTG+AGG 0.595169 3.2:-83859476 None:intergenic
ATCTGACAAAGCTTGTGACA+TGG 0.613255 3.2:+83857972 MS.gene052176:CDS
CCTGGACATCAGAAGTCCAA+AGG 0.616148 3.2:-83859482 None:intergenic
AGATCATGTTGTGCTTGTGA+AGG 0.627894 3.2:+83857557 MS.gene052176:CDS
GTTTAAGGATATTGCTGCTG+CGG 0.646957 3.2:+83857873 MS.gene052176:intron
GCTAAGCTCTGATGATGGTG+TGG 0.653682 3.2:-83857421 None:intergenic
TCATGCAGAAGCTTGTAGTG+GGG 0.666058 3.2:+83857397 MS.gene052176:CDS
AGAGAAGAGAGAATCATGGG+TGG 0.672151 3.2:+83857285 None:intergenic
TCGGATCGCTACGTGCTGCG+TGG 0.678712 3.2:+83857487 MS.gene052176:CDS
AGAACAAGCTGAACGCTACG+AGG 0.693981 3.2:+83857362 MS.gene052176:CDS
GATCACGTTCTTGTAAGCGA+CGG 0.709037 3.2:-83857466 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATCACAAATTAA+AGG - chr3.2:83858160-83858179 None:intergenic 10.0%
!! TAGCATTATAAAATTAAACA+GGG - chr3.2:83859241-83859260 None:intergenic 15.0%
!! TCAAAAAATTTCATAGTTAT+TGG + chr3.2:83858492-83858511 MS.gene052176:intron 15.0%
!! TTAGCATTATAAAATTAAAC+AGG - chr3.2:83859242-83859261 None:intergenic 15.0%
!!! GTTTTTTATTATAAGATGAA+GGG + chr3.2:83857684-83857703 MS.gene052176:CDS 15.0%
!!! TATGATTTATATTTTAAGCT+CGG - chr3.2:83858593-83858612 None:intergenic 15.0%
!! AGCATTATAAAATTAAACAG+GGG - chr3.2:83859240-83859259 None:intergenic 20.0%
!! GAGCTTAAAATATAAATCAT+AGG + chr3.2:83858592-83858611 MS.gene052176:intron 20.0%
!! TGAGGTTATTATAATCTAAT+GGG + chr3.2:83858289-83858308 MS.gene052176:intron 20.0%
!! TGCATTAAAGAAATCTATAT+TGG + chr3.2:83858865-83858884 MS.gene052176:intron 20.0%
!!! AAACAATTTTCTTTTCCTTT+TGG + chr3.2:83859360-83859379 MS.gene052176:intron 20.0%
!!! AACTATGAAATTTTTTGACT+AGG - chr3.2:83858490-83858509 None:intergenic 20.0%
!!! AATATTGTTATTCATTTGCA+AGG + chr3.2:83859015-83859034 MS.gene052176:intron 20.0%
!!! AATTCTCTTTTTTTTCTGTT+TGG + chr3.2:83858986-83859005 MS.gene052176:intron 20.0%
!!! GCATTTTGATTAATAATCAT+TGG + chr3.2:83859557-83859576 MS.gene052176:intron 20.0%
!!! GGTTTTTTATTATAAGATGA+AGG + chr3.2:83857683-83857702 MS.gene052176:CDS 20.0%
!!! TATGTTAAAAACATTTTACC+TGG - chr3.2:83859503-83859522 None:intergenic 20.0%
!!! TTTTAAAAAAGGTTTGTGTT+TGG + chr3.2:83858830-83858849 MS.gene052176:intron 20.0%
! AACTCAGATTATGATCAATT+TGG - chr3.2:83859603-83859622 None:intergenic 25.0%
! AACTGCAAATATATGGATAT+TGG + chr3.2:83858767-83858786 MS.gene052176:intron 25.0%
! AATCTGAGTTAAGCTATATT+TGG + chr3.2:83859613-83859632 MS.gene052176:intron 25.0%
! AATTCTAACTGCAGAAAATT+TGG + chr3.2:83858664-83858683 MS.gene052176:intron 25.0%
! AATTTCATAGTTATTGGAGT+TGG + chr3.2:83858498-83858517 MS.gene052176:intron 25.0%
! ATTATAAAATTAAACAGGGG+GGG - chr3.2:83859237-83859256 None:intergenic 25.0%
! CATTATAAAATTAAACAGGG+GGG - chr3.2:83859238-83859257 None:intergenic 25.0%
! CTGAGGTTATTATAATCTAA+TGG + chr3.2:83858288-83858307 MS.gene052176:intron 25.0%
! GCATTATAAAATTAAACAGG+GGG - chr3.2:83859239-83859258 None:intergenic 25.0%
! TAGTGAATTTAACTCAGAAT+GGG + chr3.2:83858920-83858939 MS.gene052176:intron 25.0%
! TTTCATGGTTAAGTTATTGT+GGG + chr3.2:83858793-83858812 MS.gene052176:intron 25.0%
!! ACAAATTAAAGGAAGCATAT+AGG - chr3.2:83858149-83858168 None:intergenic 25.0%
!! ACTTGCTAGAGAAAAAAAAA+AGG + chr3.2:83859178-83859197 MS.gene052176:intron 25.0%
!! ATTGTTGTGTTTTGTGTTTA+AGG + chr3.2:83857858-83857877 MS.gene052176:intron 25.0%
!! ATTTTCTTTTCCTTTTGGAT+AGG + chr3.2:83859365-83859384 MS.gene052176:intron 25.0%
!!! AAGAGCGTATATCTATTTTA+CGG - chr3.2:83858692-83858711 None:intergenic 25.0%
!!! ACAGAAAAATGTTCTGAAAA+GGG - chr3.2:83859533-83859552 None:intergenic 25.0%
!!! ATCTTGGTTTTTTGTTTGTT+TGG + chr3.2:83858018-83858037 MS.gene052176:intron 25.0%
!!! ATGAAATTTTTTGACTAGGA+GGG - chr3.2:83858486-83858505 None:intergenic 25.0%
!!! TATGAAATTTTTTGACTAGG+AGG - chr3.2:83858487-83858506 None:intergenic 25.0%
AAAGAAAAGAGAAACACAGA+AGG - chr3.2:83859321-83859340 None:intergenic 30.0%
AAATTCAACACTAATTGCTG+AGG + chr3.2:83858271-83858290 MS.gene052176:intron 30.0%
AAGAAATTCACAGCATATCT+AGG - chr3.2:83858442-83858461 None:intergenic 30.0%
AGAATTCTCTCTTTACTCTT+TGG + chr3.2:83859103-83859122 MS.gene052176:intron 30.0%
AGTGAATTTAACTCAGAATG+GGG + chr3.2:83858921-83858940 MS.gene052176:intron 30.0%
ATCAACTCATCCTATAAGAT+TGG + chr3.2:83857903-83857922 MS.gene052176:CDS 30.0%
ATTTGCAGTTAGACTACTAT+GGG - chr3.2:83858757-83858776 None:intergenic 30.0%
CATCCTTTCATAAGATACAT+AGG - chr3.2:83858402-83858421 None:intergenic 30.0%
GTAGTCTAACTGCAAATATA+TGG + chr3.2:83858760-83858779 MS.gene052176:intron 30.0%
GTAGTGAATTTAACTCAGAA+TGG + chr3.2:83858919-83858938 MS.gene052176:intron 30.0%
GTTTCATGGTTAAGTTATTG+TGG + chr3.2:83858792-83858811 MS.gene052176:intron 30.0%
TAAAATTGCTTGACCAAACA+AGG - chr3.2:83858225-83858244 None:intergenic 30.0%
TATTTGCAGTTAGACTACTA+TGG - chr3.2:83858758-83858777 None:intergenic 30.0%
TCAACATAACAGAATCTTTG+TGG - chr3.2:83858250-83858269 None:intergenic 30.0%
TCAACTCATCCTATAAGATT+GGG + chr3.2:83857904-83857923 MS.gene052176:CDS 30.0%
TCATTCATCTGCAACAAATT+TGG + chr3.2:83859202-83859221 MS.gene052176:intron 30.0%
TTCATGGTTAAGTTATTGTG+GGG + chr3.2:83858794-83858813 MS.gene052176:intron 30.0%
! AATCTTATAGGATGAGTTGA+TGG - chr3.2:83857904-83857923 None:intergenic 30.0%
! GATCAATTTGGAGCAATATT+AGG - chr3.2:83859591-83859610 None:intergenic 30.0%
! TATACGCTCTTTCTTTTACA+TGG + chr3.2:83858701-83858720 MS.gene052176:intron 30.0%
! TATGGATATTGGTAGTTTCA+TGG + chr3.2:83858778-83858797 MS.gene052176:intron 30.0%
! TATTTGGCTGAGTTTAAGAT+TGG + chr3.2:83857720-83857739 MS.gene052176:CDS 30.0%
!! GACAGAAAAATGTTCTGAAA+AGG - chr3.2:83859534-83859553 None:intergenic 30.0%
ACACATACTGTTCTCTGTTT+AGG - chr3.2:83857326-83857345 None:intergenic 35.0%
AGATGAAGGGTGATTATCAT+AGG + chr3.2:83857697-83857716 MS.gene052176:CDS 35.0%
CAGATTAACACAAACCTGTT+TGG - chr3.2:83857998-83858017 None:intergenic 35.0%
CGTTAACTCTGATTCAACTT+TGG - chr3.2:83857592-83857611 None:intergenic 35.0%
GAATGAGCAATTGACATGTT+TGG + chr3.2:83858330-83858349 MS.gene052176:intron 35.0%
GAATGTTTGTGGTAGTATTC+TGG + chr3.2:83857611-83857630 MS.gene052176:CDS 35.0%
GGGTGATTATCATAGGTATT+TGG + chr3.2:83857704-83857723 MS.gene052176:CDS 35.0%
GGTTTGTGTTAATCTGATCT+TGG + chr3.2:83858002-83858021 MS.gene052176:intron 35.0%
GTGCCTATGTATCTTATGAA+AGG + chr3.2:83858396-83858415 MS.gene052176:intron 35.0%
TATAAGTGTGCTGTCTTTGT+AGG - chr3.2:83859436-83859455 None:intergenic 35.0%
TATGGGTTCATTGTTCATTC+AGG - chr3.2:83858740-83858759 None:intergenic 35.0%
TCAGAGTTAACGAATGTTTG+TGG + chr3.2:83857600-83857619 MS.gene052176:CDS 35.0%
TCATCCTATAAGATTGGGTT+TGG + chr3.2:83857909-83857928 MS.gene052176:CDS 35.0%
TGCTTCTTCAAGTGAAAGTA+AGG + chr3.2:83857662-83857681 MS.gene052176:CDS 35.0%
TGTCAATTGCTCATTCTTAG+TGG - chr3.2:83858326-83858345 None:intergenic 35.0%
TTCTGATTTACACAGTGTGT+TGG + chr3.2:83858629-83858648 MS.gene052176:intron 35.0%
! AAAAGTTTGCTCATGAAGCT+GGG + chr3.2:83858892-83858911 MS.gene052176:intron 35.0%
! AAGCTATATTTGGCTTATGC+AGG + chr3.2:83859623-83859642 MS.gene052176:intron 35.0%
! ACTTGATAACACAACCAGTA+TGG - chr3.2:83859278-83859297 None:intergenic 35.0%
! AGAAGTTTTCTGACCTTGTT+TGG + chr3.2:83858209-83858228 MS.gene052176:intron 35.0%
! GTAAGAAATCCGTTTGACTT+TGG + chr3.2:83858368-83858387 MS.gene052176:intron 35.0%
! TAAAAGTTTGCTCATGAAGC+TGG + chr3.2:83858891-83858910 MS.gene052176:intron 35.0%
!! AAGAGTGTTGTTTACCATAC+TGG + chr3.2:83859261-83859280 MS.gene052176:intron 35.0%
!! GAAAAATGTTCTGAAAAGGG+TGG - chr3.2:83859530-83859549 None:intergenic 35.0%
!! TGTTCTCTGTTTAGGTTTTC+TGG - chr3.2:83857318-83857337 None:intergenic 35.0%
AGAGCCAAACCCAATCTTAT+AGG - chr3.2:83857916-83857935 None:intergenic 40.0%
AGATCATGTTGTGCTTGTGA+AGG + chr3.2:83857557-83857576 MS.gene052176:CDS 40.0%
ATCTGACAAAGCTTGTGACA+TGG + chr3.2:83857972-83857991 MS.gene052176:CDS 40.0%
ATGAAAGGATGTGTGAAAGC+TGG + chr3.2:83858411-83858430 MS.gene052176:intron 40.0%
ATTAAACAGGGGGGGAAAAA+AGG - chr3.2:83859229-83859248 None:intergenic 40.0%
ATTGCTGAACTGGACACATT+AGG + chr3.2:83859402-83859421 MS.gene052176:CDS 40.0%
CGTTTCTTCGATTGAACAGA+AGG + chr3.2:83857515-83857534 MS.gene052176:CDS 40.0%
CTTTCACTTGAAGAAGCAGA+AGG - chr3.2:83857660-83857679 None:intergenic 40.0%
GCACAAACACCAAAGTCAAA+CGG - chr3.2:83858380-83858399 None:intergenic 40.0%
GTTTAAGGATATTGCTGCTG+CGG + chr3.2:83857873-83857892 MS.gene052176:intron 40.0%
TCCTCAAAAGCCTATCCAAA+AGG - chr3.2:83859378-83859397 None:intergenic 40.0%
TCGATTGAACAGAAGGAAGA+AGG + chr3.2:83857522-83857541 MS.gene052176:CDS 40.0%
TGAGAAAAAATCTGCTGCTG+AGG + chr3.2:83857746-83857765 MS.gene052176:CDS 40.0%
TGGAGCAATATTAGGAAGAG+AGG - chr3.2:83859583-83859602 None:intergenic 40.0%
TTCATGCAGAAGCTTGTAGT+GGG + chr3.2:83857396-83857415 MS.gene052176:CDS 40.0%
! CTCTTTCTTTTACATGGCTG+TGG + chr3.2:83858707-83858726 MS.gene052176:intron 40.0%
! TCCTTTTGGATAGGCTTTTG+AGG + chr3.2:83859374-83859393 MS.gene052176:intron 40.0%
!! TGGTAGTATTCTGGAGTTGT+TGG + chr3.2:83857620-83857639 MS.gene052176:CDS 40.0%
ATGGGGAAATTGCACATGGA+AGG + chr3.2:83858938-83858957 MS.gene052176:intron 45.0%
CACTACAAGCTTCTGCATGA+AGG - chr3.2:83857397-83857416 None:intergenic 45.0%
CAGAATGGGGAAATTGCACA+TGG + chr3.2:83858934-83858953 MS.gene052176:intron 45.0%
CTGGACATCAGAAGTCCAAA+GGG - chr3.2:83859484-83859503 None:intergenic 45.0%
CTTCATGCAGAAGCTTGTAG+TGG + chr3.2:83857395-83857414 MS.gene052176:CDS 45.0%
GATCACGTTCTTGTAAGCGA+CGG - chr3.2:83857469-83857488 None:intergenic 45.0%
GTCGCTTACAAGAACGTGAT+CGG + chr3.2:83857468-83857487 MS.gene052176:CDS 45.0%
GTTGTCTTACAAAGCTGCAC+AGG + chr3.2:83857776-83857795 MS.gene052176:CDS 45.0%
TCATGCAGAAGCTTGTAGTG+GGG + chr3.2:83857397-83857416 MS.gene052176:CDS 45.0%
TCTTGTAAGCGACGGATATG+AGG - chr3.2:83857461-83857480 None:intergenic 45.0%
TGAGGAAGCAATTGCTGAAC+TGG + chr3.2:83859392-83859411 MS.gene052176:CDS 45.0%
! CTTGTTCTGCGAGTTTTGCT+AGG - chr3.2:83857350-83857369 None:intergenic 45.0%
!!! AACTTATAATTTTTTAAAAA+AGG + chr3.2:83858819-83858838 MS.gene052176:intron 5.0%
!!! TTTATTATATTGAAAATTTT+AGG + chr3.2:83858175-83858194 MS.gene052176:intron 5.0%
AGAACAAGCTGAACGCTACG+AGG + chr3.2:83857362-83857381 MS.gene052176:CDS 50.0%
AGCTTGTGACATGGCCAAAC+AGG + chr3.2:83857981-83858000 MS.gene052176:CDS 50.0%
CATCAGAAGTCCAAAGGGTG+AGG - chr3.2:83859479-83859498 None:intergenic 50.0%
CCTGGACATCAGAAGTCCAA+AGG - chr3.2:83859485-83859504 None:intergenic 50.0%
CCTTTGGACTTCTGATGTCC+AGG + chr3.2:83859482-83859501 MS.gene052176:CDS 50.0%
TGAGAGACAACCTCACCCTT+TGG + chr3.2:83859466-83859485 MS.gene052176:CDS 50.0%
! TCGACGCTAAGCTCTGATGA+TGG - chr3.2:83857429-83857448 None:intergenic 50.0%
!! GCTAAGCTCTGATGATGGTG+TGG - chr3.2:83857424-83857443 None:intergenic 50.0%
AGCTGAACGCTACGAGGAGA+TGG + chr3.2:83857368-83857387 MS.gene052176:CDS 55.0%
! CAGAGCTTAGCGTCGAAGAG+AGG + chr3.2:83857433-83857452 MS.gene052176:CDS 55.0%
TCGGATCGCTACGTGCTGCG+TGG + chr3.2:83857487-83857506 MS.gene052176:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 83857300 83859665 83857300 ID=MS.gene052176
chr3.2 mRNA 83857300 83859665 83857300 ID=MS.gene052176.t1;Parent=MS.gene052176
chr3.2 exon 83857300 83857797 83857300 ID=MS.gene052176.t1.exon1;Parent=MS.gene052176.t1
chr3.2 CDS 83857300 83857797 83857300 ID=cds.MS.gene052176.t1;Parent=MS.gene052176.t1
chr3.2 exon 83857880 83858002 83857880 ID=MS.gene052176.t1.exon2;Parent=MS.gene052176.t1
chr3.2 CDS 83857880 83858002 83857880 ID=cds.MS.gene052176.t1;Parent=MS.gene052176.t1
chr3.2 exon 83859387 83859503 83859387 ID=MS.gene052176.t1.exon3;Parent=MS.gene052176.t1
chr3.2 CDS 83859387 83859503 83859387 ID=cds.MS.gene052176.t1;Parent=MS.gene052176.t1
chr3.2 exon 83859645 83859665 83859645 ID=MS.gene052176.t1.exon4;Parent=MS.gene052176.t1
chr3.2 CDS 83859645 83859665 83859645 ID=cds.MS.gene052176.t1;Parent=MS.gene052176.t1
Gene Sequence

>MS.gene052176

ATGGGTGGTGCGATTCCAGAAAACCTAAACAGAGAACAGTATGTGTACCTAGCAAAACTCGCAGAACAAGCTGAACGCTACGAGGAGATGGTCTCCTTCATGCAGAAGCTTGTAGTGGGGTCCACACCATCATCAGAGCTTAGCGTCGAAGAGAGGAACCTCATATCCGTCGCTTACAAGAACGTGATCGGATCGCTACGTGCTGCGTGGAGAATCGTTTCTTCGATTGAACAGAAGGAAGAAGGTAGAAAGAACGAAGATCATGTTGTGCTTGTGAAGGATTACAGATCCAAAGTTGAATCAGAGTTAACGAATGTTTGTGGTAGTATTCTGGAGTTGTTGGATTCGAATCTTATACCTTCTGCTTCTTCAAGTGAAAGTAAGGTTTTTTATTATAAGATGAAGGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGGTGATGAGAAAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGTTTTTGTTTTTTCATAATTTTATTTTATTTTGTTAATTTTATGTTTGAAAGATTGATTAATTGTTGTGTTTTGTGTTTAAGGATATTGCTGCTGCGGATCTTCCATCAACTCATCCTATAAGATTGGGTTTGGCTCTGAATTTCTCTGTTTTCTATTATGAAATTCTCAATCAATCTGACAAAGCTTGTGACATGGCCAAACAGGTTTGTGTTAATCTGATCTTGGTTTTTTGTTTGTTTGGTTGAAAATAACTTGTTCATGTTTATGTGTTATTCAGTTGAGCTATGAATGTTATGCTGTTATCTGCAATGTTATTGTTTTAATGATTTATGAAGTTATACTAATACCTATATGCTTCCTTTAATTTGTGATTTATTTATTATATTGAAAATTTTAGGTCAACTTGATAAGAAGTTTTCTGACCTTGTTTGGTCAAGCAATTTTAAGCCACAAAGATTCTGTTATGTTGAAAAATTCAACACTAATTGCTGAGGTTATTATAATCTAATGGGCTGCATTCTCACCACTAAGAATGAGCAATTGACATGTTTGGACTAGATTTTGACTAGTAAGAAATCCGTTTGACTTTGGTGTTTGTGCCTATGTATCTTATGAAAGGATGTGTGAAAGCTGGAAATTCCTAGATATGCTGTGAATTTCTTGACAACTCATGTTTATAGTTTCCCTCCTAGTCAAAAAATTTCATAGTTATTGGAGTTGGTCTGTCATAGCAGTTGAATGAAGATCTGACTATTCAAATTCTGAGTTTTTTTTTAAAAAAACTGATTTACCGAGCTTAAAATATAAATCATAGGATGTTTATAATTGATTCTGATTTACACAGTGTGTTGGCGTTGAATGCATAATTCTAACTGCAGAAAATTTGGATCCGTAAAATAGATATACGCTCTTTCTTTTACATGGCTGTGGTAACAGACCTGAATGAACAATGAACCCATAGTAGTCTAACTGCAAATATATGGATATTGGTAGTTTCATGGTTAAGTTATTGTGGGGAAAACTTATAATTTTTTAAAAAAGGTTTGTGTTTGGCGAGAGTTATGCTGCATTAAAGAAATCTATATTGGTTTTAAAAGTTTGCTCATGAAGCTGGGTATTGTAGTGAATTTAACTCAGAATGGGGAAATTGCACATGGAAGGAACATAACAAACATACTTTCTCAAGAATTCTCTTTTTTTTCTGTTTGGCGATGAAATATTGTTATTCATTTGCAAGGAACTTAACAAACATACTTCTCAAGAATTCTCTCTCTTTCTCGAACTTAACAAACATGCTTTCTCAAGAATTCTCTCTTTACTCTTTGGTAATGAAATATTGTTATTTATCTGCAATGATATTATAGATAACTTCAAGTTCACTTGCTAGAGAAAAAAAAAAGGATCATTCATCTGCAACAAATTTGGACCTTTTTTCCCCCCCTGTTTAATTTTATAATGCTAAAGAGTGTTGTTTACCATACTGGTTGTGTTATCAAGTTTATATTGACGTAAGTTATTCCTTCTGTGTTTCTCTTTTCTTTTCTACAATCTACTGAACTGAAACAATTTTCTTTTCCTTTTGGATAGGCTTTTGAGGAAGCAATTGCTGAACTGGACACATTAGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGTAAAATGTTTTTAACATAGAAGCCACCCTTTTCAGAACATTTTTCTGTCAAAGCATTTTGATTAATAATCATTGGCCTCTCTTCCTAATATTGCTCCAAATTGATCATAATCTGAGTTAAGCTATATTTGGCTTATGCAGGACCAGCTAGATGAGCCTTGA

Protein sequence

>MS.gene052176.t1

MGGAIPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVGSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTNVCGSILELLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIGDEKKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACDMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP