Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55245.t1 | XP_003613819.1 | 98.4 | 491 | 8 | 0 | 1 | 491 | 42 | 532 | 2.10E-281 | 977.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55245.t1 | Q9S746 | 43.0 | 542 | 230 | 13 | 12 | 490 | 62 | 587 | 5.3e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55245.t1 | G7KGL1 | 98.4 | 491 | 8 | 0 | 1 | 491 | 42 | 532 | 1.5e-281 | 977.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene55245 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene053538 | MS.gene55245 | 0.813329 | 2.70E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene55245 | 0.808203 | 3.48E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene55245 | 0.807735 | 4.37E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55245.t1 | MTR_5g041340 | 98.371 | 491 | 8 | 0 | 1 | 491 | 42 | 532 | 0.0 | 999 |
| MS.gene55245.t1 | MTR_5g011010 | 44.096 | 542 | 223 | 11 | 13 | 490 | 48 | 573 | 7.22e-145 | 427 |
| MS.gene55245.t1 | MTR_5g011020 | 44.096 | 542 | 223 | 13 | 13 | 490 | 13 | 538 | 5.21e-141 | 416 |
| MS.gene55245.t1 | MTR_2g100070 | 41.774 | 541 | 236 | 12 | 13 | 490 | 63 | 587 | 1.33e-130 | 391 |
| MS.gene55245.t1 | MTR_8g016320 | 41.805 | 543 | 237 | 11 | 11 | 490 | 53 | 579 | 1.81e-129 | 388 |
| MS.gene55245.t1 | MTR_4g005860 | 44.636 | 522 | 231 | 14 | 13 | 491 | 54 | 560 | 6.40e-128 | 384 |
| MS.gene55245.t1 | MTR_1g101770 | 40.331 | 543 | 244 | 9 | 12 | 490 | 45 | 571 | 8.90e-128 | 384 |
| MS.gene55245.t1 | MTR_1g101760 | 41.837 | 294 | 113 | 6 | 12 | 305 | 45 | 280 | 7.54e-62 | 209 |
| MS.gene55245.t1 | MTR_5g024110 | 43.750 | 64 | 35 | 1 | 147 | 209 | 17 | 80 | 1.10e-13 | 68.2 |
| MS.gene55245.t1 | MTR_5g041300 | 75.676 | 37 | 9 | 0 | 417 | 453 | 138 | 174 | 7.96e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55245.t1 | AT1G14190 | 61.303 | 491 | 180 | 4 | 1 | 491 | 4 | 484 | 0.0 | 631 |
| MS.gene55245.t1 | AT1G14190 | 61.303 | 491 | 180 | 4 | 1 | 491 | 25 | 505 | 0.0 | 631 |
| MS.gene55245.t1 | AT1G14185 | 61.633 | 490 | 177 | 4 | 1 | 490 | 25 | 503 | 0.0 | 628 |
| MS.gene55245.t1 | AT1G72970 | 43.119 | 545 | 225 | 14 | 12 | 490 | 62 | 587 | 1.84e-135 | 404 |
| MS.gene55245.t1 | AT5G51950 | 42.779 | 547 | 228 | 11 | 13 | 491 | 13 | 542 | 3.11e-135 | 402 |
| MS.gene55245.t1 | AT5G51950 | 42.779 | 547 | 228 | 11 | 13 | 491 | 46 | 575 | 1.44e-134 | 401 |
| MS.gene55245.t1 | AT5G51950 | 42.623 | 549 | 228 | 11 | 13 | 491 | 46 | 577 | 2.33e-134 | 401 |
| MS.gene55245.t1 | AT1G73050 | 44.902 | 510 | 236 | 12 | 13 | 490 | 54 | 550 | 1.02e-133 | 398 |
| MS.gene55245.t1 | AT3G56060 | 41.839 | 533 | 244 | 11 | 13 | 490 | 46 | 567 | 1.42e-133 | 399 |
| MS.gene55245.t1 | AT1G72970 | 44.190 | 525 | 221 | 12 | 12 | 490 | 62 | 560 | 1.68e-131 | 393 |
| MS.gene55245.t1 | AT1G12570 | 41.481 | 540 | 237 | 11 | 13 | 490 | 46 | 568 | 2.18e-130 | 390 |
| MS.gene55245.t1 | AT5G51930 | 40.441 | 544 | 236 | 10 | 12 | 490 | 25 | 545 | 1.63e-121 | 367 |
| MS.gene55245.t1 | AT5G51930 | 40.262 | 534 | 231 | 10 | 12 | 480 | 72 | 582 | 4.90e-116 | 353 |
Find 104 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAACTGTGAGGTTCTT+TGG | 0.218105 | 5.2:+30940562 | None:intergenic |
| ATCAGGGGAACCAAGATTTC+TGG | 0.236590 | 5.2:-30940646 | MS.gene55245:CDS |
| GTTATAGTTTGGAACATATC+AGG | 0.253729 | 5.2:-30940663 | MS.gene55245:CDS |
| TATCATGGTGGTTGCAATAT+TGG | 0.269803 | 5.2:-30939142 | MS.gene55245:CDS |
| CTTGATTCATTGATGCTTAG+TGG | 0.272621 | 5.2:+30939439 | None:intergenic |
| CTACAAAGTTCATGGTATAA+AGG | 0.291989 | 5.2:-30939101 | MS.gene55245:CDS |
| GCCCTACAATGGTTATAGTT+TGG | 0.297743 | 5.2:-30940674 | MS.gene55245:CDS |
| TCATGGTATAAAGGGATTAA+AGG | 0.306133 | 5.2:-30939092 | MS.gene55245:CDS |
| GGGAGTGTCTTCGATGGGTT+TGG | 0.328701 | 5.2:-30940625 | MS.gene55245:CDS |
| CCCCTTGAAGTTGAATGGTT+TGG | 0.336997 | 5.2:+30939715 | None:intergenic |
| TTTAGAGAATGAAAATGATA+TGG | 0.348060 | 5.2:-30939317 | MS.gene55245:CDS |
| GGTGGCTCATCAGCTATAAA+TGG | 0.349307 | 5.2:-30940865 | MS.gene55245:CDS |
| GTAATTGATAGAAGATACTA+TGG | 0.351305 | 5.2:-30940982 | MS.gene55245:CDS |
| CCTGATCCTCCACAAATTGC+AGG | 0.366123 | 5.2:-30939505 | MS.gene55245:CDS |
| CATCACCCCTTGAAGTTGAA+TGG | 0.386140 | 5.2:+30939710 | None:intergenic |
| TACAAAGTTCATGGTATAAA+GGG | 0.389378 | 5.2:-30939100 | MS.gene55245:CDS |
| TGAATCACAGCAAAGCAAAT+TGG | 0.390685 | 5.2:-30939224 | MS.gene55245:CDS |
| ACTAGTTCATGAAATGAAAC+AGG | 0.408524 | 5.2:-30939596 | MS.gene55245:CDS |
| GAAAGAGGTGGTTCACCATA+TGG | 0.411776 | 5.2:-30941015 | MS.gene55245:CDS |
| GATCAGTGTTGTTTAGTTCA+AGG | 0.414296 | 5.2:+30939371 | None:intergenic |
| CCTGCAATTTGTGGAGGATC+AGG | 0.419222 | 5.2:+30939505 | None:intergenic |
| ATAGCTATGCCTCTTTCAAA+AGG | 0.423105 | 5.2:-30939397 | MS.gene55245:CDS |
| AATGTGAGAGGAAGAGTTCT+TGG | 0.424602 | 5.2:-30940886 | MS.gene55245:CDS |
| GCACATGACTTCAGATGTTA+AGG | 0.425665 | 5.2:-30941139 | None:intergenic |
| GTATCTTCTATCAATTACTA+AGG | 0.444205 | 5.2:+30940987 | None:intergenic |
| GAATTTAGTCTTCTCGAAAC+GGG | 0.449569 | 5.2:-30940703 | MS.gene55245:CDS |
| TTCCAAACTATAACCATTGT+AGG | 0.450481 | 5.2:+30940672 | None:intergenic |
| TCAGATGTTAAGGAAGTAGC+TGG | 0.452098 | 5.2:-30941129 | MS.gene55245:CDS |
| AAGGGATTAAAGGTATTAGA+TGG | 0.452546 | 5.2:-30939082 | MS.gene55245:CDS |
| ATTACTAAGGGATTTCCATA+TGG | 0.457033 | 5.2:+30941000 | None:intergenic |
| GACAAAGACTACAAAGTTCA+TGG | 0.460040 | 5.2:-30939109 | MS.gene55245:CDS |
| CACTAAGCATCAATGAATCA+AGG | 0.461096 | 5.2:-30939438 | MS.gene55245:CDS |
| GATGAATTTGTTGATAAAGT+TGG | 0.462185 | 5.2:-30940820 | MS.gene55245:CDS |
| TGTGTTATGCCTGCAATTTG+TGG | 0.463498 | 5.2:+30939496 | None:intergenic |
| GAAGACACTCCCAGAAATCT+TGG | 0.463534 | 5.2:+30940636 | None:intergenic |
| AACCAAACCATTCAACTTCA+AGG | 0.464351 | 5.2:-30939717 | MS.gene55245:CDS |
| TCAGGGGAACCAAGATTTCT+GGG | 0.466094 | 5.2:-30940645 | MS.gene55245:CDS |
| ATGGTTTGGTTTCTTGATGT+AGG | 0.472808 | 5.2:+30939729 | None:intergenic |
| TGAATTTAGTCTTCTCGAAA+CGG | 0.479430 | 5.2:-30940704 | MS.gene55245:CDS |
| ATTTGTTGATAAAGTTGGTT+GGG | 0.480078 | 5.2:-30940815 | MS.gene55245:CDS |
| TTGTTAAAGAAGCTTATGAA+TGG | 0.481724 | 5.2:-30940783 | MS.gene55245:CDS |
| TCATATGACTACATTATAGT+TGG | 0.482506 | 5.2:-30941102 | MS.gene55245:CDS |
| TTCACAGTAGGGTTAAGCCT+TGG | 0.482996 | 5.2:+30939349 | None:intergenic |
| ATATTATCAGCAGGTGCATT+AGG | 0.489867 | 5.2:-30939685 | MS.gene55245:CDS |
| TCAGCTGATCTTCTTGAGGC+TGG | 0.493708 | 5.2:-30940589 | MS.gene55245:CDS |
| CAAAGATTCACTTCAGAAGA+TGG | 0.495094 | 5.2:-30940916 | MS.gene55245:CDS |
| AATAGTTGAATTTCACAGTA+GGG | 0.505465 | 5.2:+30939338 | None:intergenic |
| TGTTAAAGAAGCTTATGAAT+GGG | 0.509588 | 5.2:-30940782 | MS.gene55245:CDS |
| GTATCAAGATTCTCCAACAA+AGG | 0.511803 | 5.2:-30938991 | MS.gene55245:CDS |
| AGAACTATCTATCACTATCA+TGG | 0.512229 | 5.2:-30939157 | MS.gene55245:CDS |
| TGTTTCATTTCATGAACTAG+TGG | 0.512739 | 5.2:+30939598 | None:intergenic |
| CACTTAGAAGCAAAAGTTGA+GGG | 0.513512 | 5.2:+30939659 | None:intergenic |
| ATCAAGTTCATCAAAAGTAA+TGG | 0.516774 | 5.2:-30939775 | MS.gene55245:CDS |
| TATCAAGATTCTCCAACAAA+GGG | 0.517558 | 5.2:-30938990 | MS.gene55245:CDS |
| CAAGAATGAAACAAGGGCTA+AGG | 0.518092 | 5.2:-30939800 | MS.gene55245:CDS |
| GTCACCAGGTACTAATCCTA+TGG | 0.519218 | 5.2:-30939044 | MS.gene55245:CDS |
| AATTTGTTGATAAAGTTGGT+TGG | 0.526334 | 5.2:-30940816 | MS.gene55245:CDS |
| TCTGATAGAGTAGCTGCTAA+AGG | 0.528626 | 5.2:+30941060 | None:intergenic |
| TTATAGTTTGGAACATATCA+GGG | 0.530245 | 5.2:-30940662 | MS.gene55245:CDS |
| AAATAGTTGAATTTCACAGT+AGG | 0.534156 | 5.2:+30939337 | None:intergenic |
| TATGACTACATTATAGTTGG+AGG | 0.537388 | 5.2:-30941099 | MS.gene55245:CDS |
| AGCATCATCTTTCATTACAA+TGG | 0.542353 | 5.2:-30940523 | MS.gene55245:intron |
| ATTTCTGGGAGTGTCTTCGA+TGG | 0.546450 | 5.2:-30940631 | MS.gene55245:CDS |
| TTATTGTCTTTCTGAATCAG+TGG | 0.548927 | 5.2:+30940955 | None:intergenic |
| ACCAAACCATTCAACTTCAA+GGG | 0.551680 | 5.2:-30939716 | MS.gene55245:CDS |
| TTTCTGGGAGTGTCTTCGAT+GGG | 0.552465 | 5.2:-30940630 | MS.gene55245:CDS |
| TTGATGCTAGGAAGGTATCA+AGG | 0.552478 | 5.2:-30939013 | MS.gene55245:CDS |
| TCTGTGCTACTAATAGAAAG+AGG | 0.556445 | 5.2:-30941030 | MS.gene55245:CDS |
| TAGCTATGCCTCTTTCAAAA+GGG | 0.556974 | 5.2:-30939396 | MS.gene55245:CDS |
| GATGGTGTTAGCAATGTGAG+AGG | 0.558102 | 5.2:-30940898 | MS.gene55245:CDS |
| TATCTTCTATCAATTACTAA+GGG | 0.565588 | 5.2:+30940988 | None:intergenic |
| AAGAATGAAACAAGGGCTAA+GGG | 0.566252 | 5.2:-30939799 | MS.gene55245:CDS |
| GGTGATGTCATATTATCAGC+AGG | 0.568505 | 5.2:-30939694 | MS.gene55245:CDS |
| GAAATGAAACAGGTTGGTCA+AGG | 0.573424 | 5.2:-30939586 | MS.gene55245:CDS |
| TCAACTAAGATTGCTATGCA+AGG | 0.575435 | 5.2:+30939550 | None:intergenic |
| AACTACTCAATAAAATTGCA+AGG | 0.579472 | 5.2:-30939273 | MS.gene55245:CDS |
| TCCAAACTATAACCATTGTA+GGG | 0.583764 | 5.2:+30940673 | None:intergenic |
| ACTAAGCATCAATGAATCAA+GGG | 0.592050 | 5.2:-30939437 | MS.gene55245:CDS |
| GTTCATGAAATGAAACAGGT+TGG | 0.592262 | 5.2:-30939592 | MS.gene55245:CDS |
| TAAAGAAGCTTATGAATGGG+TGG | 0.595958 | 5.2:-30940779 | MS.gene55245:CDS |
| CAACTAAGATTGCTATGCAA+GGG | 0.598474 | 5.2:+30939551 | None:intergenic |
| AACTAAACAACACTGATCCA+AGG | 0.600111 | 5.2:-30939366 | MS.gene55245:CDS |
| TGCTTTGCTGTGATTCACCA+AGG | 0.601420 | 5.2:+30939230 | None:intergenic |
| GACTACATTATAGTTGGAGG+AGG | 0.604634 | 5.2:-30941096 | MS.gene55245:CDS |
| GGCTCATCAGCTATAAATGG+TGG | 0.608408 | 5.2:-30940862 | MS.gene55245:CDS |
| GTTATGCCTGCAATTTGTGG+AGG | 0.614036 | 5.2:+30939499 | None:intergenic |
| CAGGTGACAAGAATGAAACA+AGG | 0.617011 | 5.2:-30939807 | MS.gene55245:CDS |
| GTGAGAGGAAGAGTTCTTGG+TGG | 0.618458 | 5.2:-30940883 | MS.gene55245:CDS |
| TACCTCAGCTGATCTTCTTG+AGG | 0.626186 | 5.2:-30940593 | MS.gene55245:CDS |
| CCAAACCATTCAACTTCAAG+GGG | 0.628346 | 5.2:-30939715 | MS.gene55245:CDS |
| CAGATGTTAAGGAAGTAGCT+GGG | 0.630874 | 5.2:-30941128 | MS.gene55245:CDS |
| AGCATCAAAAGTGTAGCCAT+AGG | 0.642151 | 5.2:+30939028 | None:intergenic |
| CCACTTAGAAGCAAAAGTTG+AGG | 0.648037 | 5.2:+30939658 | None:intergenic |
| AGCCTCAAGAAGATCAGCTG+AGG | 0.672209 | 5.2:+30940591 | None:intergenic |
| AATTCAGCAACAGATTGCCA+TGG | 0.672603 | 5.2:+30940721 | None:intergenic |
| TATAGTTTGGAACATATCAG+GGG | 0.673013 | 5.2:-30940661 | MS.gene55245:CDS |
| ATAGTTGGAGGAGGTACATG+CGG | 0.673829 | 5.2:-30941087 | MS.gene55245:CDS |
| GTGCTACTAATAGAAAGAGG+TGG | 0.687300 | 5.2:-30941027 | MS.gene55245:CDS |
| GTAGCCATAGGATTAGTACC+TGG | 0.693537 | 5.2:+30939040 | None:intergenic |
| AGGTGACAAGAATGAAACAA+GGG | 0.702447 | 5.2:-30939806 | MS.gene55245:CDS |
| ACTATCTATCACTATCATGG+TGG | 0.706690 | 5.2:-30939154 | MS.gene55245:CDS |
| TGGTTGCAATATTGGAACAG+TGG | 0.713386 | 5.2:-30939134 | MS.gene55245:CDS |
| AAAGATGATGCTCTTCACTG+TGG | 0.719776 | 5.2:+30940534 | None:intergenic |
| TGGCATTCACAAGAACTGTG+AGG | 0.769878 | 5.2:+30940554 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCAGTTTACAATTT+TGG | - | chr5.2:30940258-30940277 | MS.gene55245:intron | 15.0% |
| !!! | AATTTTTTCAATTGTTCTTT+TGG | + | chr5.2:30940489-30940508 | None:intergenic | 15.0% |
| !! | AAGTTGAAGATTTCAAAAAA+CGG | - | chr5.2:30940096-30940115 | MS.gene55245:intron | 20.0% |
| !! | ATCATCTTCCATAATTTAAA+GGG | - | chr5.2:30939800-30939819 | MS.gene55245:CDS | 20.0% |
| !! | TATCTTCTATCAATTACTAA+GGG | + | chr5.2:30939129-30939148 | None:intergenic | 20.0% |
| !! | TTTAGAGAATGAAAATGATA+TGG | - | chr5.2:30940797-30940816 | MS.gene55245:CDS | 20.0% |
| !!! | ATAATTTTTTTATGTCTCTG+TGG | - | chr5.2:30939689-30939708 | MS.gene55245:CDS | 20.0% |
| !!! | ATTCATTTTCCATAGTTTAA+AGG | - | chr5.2:30939736-30939755 | MS.gene55245:CDS | 20.0% |
| ! | AAATAGTTGAATTTCACAGT+AGG | + | chr5.2:30940780-30940799 | None:intergenic | 25.0% |
| ! | AACTACTCAATAAAATTGCA+AGG | - | chr5.2:30940841-30940860 | MS.gene55245:CDS | 25.0% |
| ! | AATAGTTGAATTTCACAGTA+GGG | + | chr5.2:30940779-30940798 | None:intergenic | 25.0% |
| ! | ATCAAGTTCATCAAAAGTAA+TGG | - | chr5.2:30940339-30940358 | MS.gene55245:intron | 25.0% |
| ! | CATCATCTTCCATAATTTAA+AGG | - | chr5.2:30939799-30939818 | MS.gene55245:CDS | 25.0% |
| ! | GTAATTGATAGAAGATACTA+TGG | - | chr5.2:30939132-30939151 | MS.gene55245:CDS | 25.0% |
| ! | GTATCTTCTATCAATTACTA+AGG | + | chr5.2:30939130-30939149 | None:intergenic | 25.0% |
| ! | TACAAAGTTCATGGTATAAA+GGG | - | chr5.2:30941014-30941033 | MS.gene55245:CDS | 25.0% |
| ! | TAGCCATAATGTTAAAACTA+CGG | + | chr5.2:30939856-30939875 | None:intergenic | 25.0% |
| ! | TCATATGACTACATTATAGT+TGG | - | chr5.2:30939012-30939031 | MS.gene55245:CDS | 25.0% |
| ! | TGTTAAAGAAGCTTATGAAT+GGG | - | chr5.2:30939332-30939351 | MS.gene55245:CDS | 25.0% |
| ! | TTGTTAAAGAAGCTTATGAA+TGG | - | chr5.2:30939331-30939350 | MS.gene55245:CDS | 25.0% |
| !! | ATTTGTTGATAAAGTTGGTT+GGG | - | chr5.2:30939299-30939318 | MS.gene55245:CDS | 25.0% |
| !! | TTATAGTTTGGAACATATCA+GGG | - | chr5.2:30939452-30939471 | MS.gene55245:CDS | 25.0% |
| !! | TTTTCTTGCAAAACTTTCTA+AGG | + | chr5.2:30940932-30940951 | None:intergenic | 25.0% |
| !!! | AATTTGTTGATAAAGTTGGT+TGG | - | chr5.2:30939298-30939317 | MS.gene55245:CDS | 25.0% |
| !!! | GATGAATTTGTTGATAAAGT+TGG | - | chr5.2:30939294-30939313 | MS.gene55245:CDS | 25.0% |
| AACTACATGTAATAAGTGCA+AGG | - | chr5.2:30939644-30939663 | MS.gene55245:CDS | 30.0% | |
| AAGATTTCAAAAAACGGTCT+AGG | - | chr5.2:30940102-30940121 | MS.gene55245:intron | 30.0% | |
| ACTAAGCATCAATGAATCAA+GGG | - | chr5.2:30940677-30940696 | MS.gene55245:CDS | 30.0% | |
| ACTAGTTCATGAAATGAAAC+AGG | - | chr5.2:30940518-30940537 | MS.gene55245:intron | 30.0% | |
| AGAACTATCTATCACTATCA+TGG | - | chr5.2:30940957-30940976 | MS.gene55245:CDS | 30.0% | |
| AGCATCATCTTTCATTACAA+TGG | - | chr5.2:30939591-30939610 | MS.gene55245:CDS | 30.0% | |
| ATTACTAAGGGATTTCCATA+TGG | + | chr5.2:30939117-30939136 | None:intergenic | 30.0% | |
| CAATGACCATACAATTTAGA+GGG | - | chr5.2:30940027-30940046 | MS.gene55245:intron | 30.0% | |
| CTACAAAGTTCATGGTATAA+AGG | - | chr5.2:30941013-30941032 | MS.gene55245:CDS | 30.0% | |
| GCAACTGCAATACAATTAAA+TGG | + | chr5.2:30940165-30940184 | None:intergenic | 30.0% | |
| TATCAAGATTCTCCAACAAA+GGG | - | chr5.2:30941124-30941143 | MS.gene55245:CDS | 30.0% | |
| TATGACTACATTATAGTTGG+AGG | - | chr5.2:30939015-30939034 | MS.gene55245:CDS | 30.0% | |
| TCATGGTATAAAGGGATTAA+AGG | - | chr5.2:30941022-30941041 | MS.gene55245:CDS | 30.0% | |
| TCCAAACTATAACCATTGTA+GGG | + | chr5.2:30939444-30939463 | None:intergenic | 30.0% | |
| TGTTTCATTTCATGAACTAG+TGG | + | chr5.2:30940519-30940538 | None:intergenic | 30.0% | |
| TTATTGTCTTTCTGAATCAG+TGG | + | chr5.2:30939162-30939181 | None:intergenic | 30.0% | |
| TTCCAAACTATAACCATTGT+AGG | + | chr5.2:30939445-30939464 | None:intergenic | 30.0% | |
| ! | AAGTCTATTGCATTTTTCCT+TGG | - | chr5.2:30940867-30940886 | MS.gene55245:CDS | 30.0% |
| ! | AGTCATGATATCTGATAATG+TGG | + | chr5.2:30940196-30940215 | None:intergenic | 30.0% |
| ! | GTTATAGTTTGGAACATATC+AGG | - | chr5.2:30939451-30939470 | MS.gene55245:CDS | 30.0% |
| ! | TATAGTTTGGAACATATCAG+GGG | - | chr5.2:30939453-30939472 | MS.gene55245:CDS | 30.0% |
| ! | TGAATTTAGTCTTCTCGAAA+CGG | - | chr5.2:30939410-30939429 | MS.gene55245:CDS | 30.0% |
| !! | AAGGGATTAAAGGTATTAGA+TGG | - | chr5.2:30941032-30941051 | MS.gene55245:CDS | 30.0% |
| !!! | CTAGGTTTTAAATCACAGTT+AGG | + | chr5.2:30940223-30940242 | None:intergenic | 30.0% |
| AACCAAACCATTCAACTTCA+AGG | - | chr5.2:30940397-30940416 | MS.gene55245:intron | 35.0% | |
| AACTAAACAACACTGATCCA+AGG | - | chr5.2:30940748-30940767 | MS.gene55245:CDS | 35.0% | |
| AAGAATGAAACAAGGGCTAA+GGG | - | chr5.2:30940315-30940334 | MS.gene55245:intron | 35.0% | |
| AAGATTGTTGAAGTTCTGCA+AGG | + | chr5.2:30939982-30940001 | None:intergenic | 35.0% | |
| ACCAAACCATTCAACTTCAA+GGG | - | chr5.2:30940398-30940417 | MS.gene55245:intron | 35.0% | |
| ACTATCTATCACTATCATGG+TGG | - | chr5.2:30940960-30940979 | MS.gene55245:CDS | 35.0% | |
| AGGTGACAAGAATGAAACAA+GGG | - | chr5.2:30940308-30940327 | MS.gene55245:intron | 35.0% | |
| ATAGCTATGCCTCTTTCAAA+AGG | - | chr5.2:30940717-30940736 | MS.gene55245:CDS | 35.0% | |
| ATATTATCAGCAGGTGCATT+AGG | - | chr5.2:30940429-30940448 | MS.gene55245:intron | 35.0% | |
| ATTCTGTTGCTACGTATTCT+AGG | + | chr5.2:30940241-30940260 | None:intergenic | 35.0% | |
| CAAAGATTCACTTCAGAAGA+TGG | - | chr5.2:30939198-30939217 | MS.gene55245:CDS | 35.0% | |
| CAACTAAGATTGCTATGCAA+GGG | + | chr5.2:30940566-30940585 | None:intergenic | 35.0% | |
| CACTAAGCATCAATGAATCA+AGG | - | chr5.2:30940676-30940695 | MS.gene55245:CDS | 35.0% | |
| CACTTAGAAGCAAAAGTTGA+GGG | + | chr5.2:30940458-30940477 | None:intergenic | 35.0% | |
| CATAATGTTAAAACTACGGC+CGG | + | chr5.2:30939852-30939871 | None:intergenic | 35.0% | |
| CCAATGACCATACAATTTAG+AGG | - | chr5.2:30940026-30940045 | MS.gene55245:intron | 35.0% | |
| CCTCTAAATTGTATGGTCAT+TGG | + | chr5.2:30940029-30940048 | None:intergenic | 35.0% | |
| CTTGATTCATTGATGCTTAG+TGG | + | chr5.2:30940678-30940697 | None:intergenic | 35.0% | |
| GAAAATGAATGCCACCATTA+TGG | + | chr5.2:30939726-30939745 | None:intergenic | 35.0% | |
| GAATGCAATTTCAGATATCC+TGG | - | chr5.2:30939916-30939935 | MS.gene55245:intron | 35.0% | |
| GACAAAGACTACAAAGTTCA+TGG | - | chr5.2:30941005-30941024 | MS.gene55245:CDS | 35.0% | |
| GTATCAAGATTCTCCAACAA+AGG | - | chr5.2:30941123-30941142 | MS.gene55245:CDS | 35.0% | |
| GTTCATGAAATGAAACAGGT+TGG | - | chr5.2:30940522-30940541 | MS.gene55245:intron | 35.0% | |
| TAAAGAAGCTTATGAATGGG+TGG | - | chr5.2:30939335-30939354 | MS.gene55245:CDS | 35.0% | |
| TAGCTATGCCTCTTTCAAAA+GGG | - | chr5.2:30940718-30940737 | MS.gene55245:CDS | 35.0% | |
| TATCATGGTGGTTGCAATAT+TGG | - | chr5.2:30940972-30940991 | MS.gene55245:CDS | 35.0% | |
| TCAACTAAGATTGCTATGCA+AGG | + | chr5.2:30940567-30940586 | None:intergenic | 35.0% | |
| TGAATCACAGCAAAGCAAAT+TGG | - | chr5.2:30940890-30940909 | MS.gene55245:CDS | 35.0% | |
| TGACAGGACCCTTTAAATTA+TGG | + | chr5.2:30939811-30939830 | None:intergenic | 35.0% | |
| TTCTTGAAATTTGACCACTC+AGG | - | chr5.2:30940288-30940307 | MS.gene55245:intron | 35.0% | |
| TTGCATCGCAAGTAAAATTG+TGG | + | chr5.2:30939884-30939903 | None:intergenic | 35.0% | |
| ! | ACAATTTTACTTGCGATGCA+AGG | - | chr5.2:30939883-30939902 | MS.gene55245:intron | 35.0% |
| ! | ATCTGAAATTGCATTCGCAA+CGG | + | chr5.2:30939912-30939931 | None:intergenic | 35.0% |
| ! | CAATTTTACTTGCGATGCAA+GGG | - | chr5.2:30939884-30939903 | MS.gene55245:intron | 35.0% |
| ! | GAATTTAGTCTTCTCGAAAC+GGG | - | chr5.2:30939411-30939430 | MS.gene55245:CDS | 35.0% |
| ! | TCTGTGCTACTAATAGAAAG+AGG | - | chr5.2:30939084-30939103 | MS.gene55245:CDS | 35.0% |
| !! | ATGGTTTGGTTTCTTGATGT+AGG | + | chr5.2:30940388-30940407 | None:intergenic | 35.0% |
| !! | GATCAGTGTTGTTTAGTTCA+AGG | + | chr5.2:30940746-30940765 | None:intergenic | 35.0% |
| AAAGATGATGCTCTTCACTG+TGG | + | chr5.2:30939583-30939602 | None:intergenic | 40.0% | |
| AATGTGAGAGGAAGAGTTCT+TGG | - | chr5.2:30939228-30939247 | MS.gene55245:CDS | 40.0% | |
| AATTCAGCAACAGATTGCCA+TGG | + | chr5.2:30939396-30939415 | None:intergenic | 40.0% | |
| ACAAGAACTGTGAGGTTCTT+TGG | + | chr5.2:30939555-30939574 | None:intergenic | 40.0% | |
| ACAGGACCCTCTAAATTGTA+TGG | + | chr5.2:30940036-30940055 | None:intergenic | 40.0% | |
| CAAGAATGAAACAAGGGCTA+AGG | - | chr5.2:30940314-30940333 | MS.gene55245:intron | 40.0% | |
| CAAGGTGAATGCCACAATTA+TGG | + | chr5.2:30939964-30939983 | None:intergenic | 40.0% | |
| CAGATGTTAAGGAAGTAGCT+GGG | - | chr5.2:30938986-30939005 | MS.gene55245:CDS | 40.0% | |
| CAGGTGACAAGAATGAAACA+AGG | - | chr5.2:30940307-30940326 | MS.gene55245:intron | 40.0% | |
| CCAAACCATTCAACTTCAAG+GGG | - | chr5.2:30940399-30940418 | MS.gene55245:intron | 40.0% | |
| CCACTTAGAAGCAAAAGTTG+AGG | + | chr5.2:30940459-30940478 | None:intergenic | 40.0% | |
| CGACAGGATCCTTTAAACTA+TGG | + | chr5.2:30939748-30939767 | None:intergenic | 40.0% | |
| GACTACATTATAGTTGGAGG+AGG | - | chr5.2:30939018-30939037 | MS.gene55245:CDS | 40.0% | |
| GCCCTACAATGGTTATAGTT+TGG | - | chr5.2:30939440-30939459 | MS.gene55245:CDS | 40.0% | |
| GGTGATGTCATATTATCAGC+AGG | - | chr5.2:30940420-30940439 | MS.gene55245:intron | 40.0% | |
| TCAGATGTTAAGGAAGTAGC+TGG | - | chr5.2:30938985-30939004 | MS.gene55245:CDS | 40.0% | |
| TCTGATAGAGTAGCTGCTAA+AGG | + | chr5.2:30939057-30939076 | None:intergenic | 40.0% | |
| TGCCATGGTGTGAGAAAAAA+GGG | + | chr5.2:30939381-30939400 | None:intergenic | 40.0% | |
| TGGTTGCAATATTGGAACAG+TGG | - | chr5.2:30940980-30940999 | MS.gene55245:CDS | 40.0% | |
| TGTGTTATGCCTGCAATTTG+TGG | + | chr5.2:30940621-30940640 | None:intergenic | 40.0% | |
| TTGCCATGGTGTGAGAAAAA+AGG | + | chr5.2:30939382-30939401 | None:intergenic | 40.0% | |
| TTTCATTCTTGTCACCTGAG+TGG | + | chr5.2:30940305-30940324 | None:intergenic | 40.0% | |
| ! | AGCATCAAAAGTGTAGCCAT+AGG | + | chr5.2:30941089-30941108 | None:intergenic | 40.0% |
| ! | ATGGCTACACTTTTGATGCT+AGG | - | chr5.2:30941089-30941108 | MS.gene55245:CDS | 40.0% |
| ! | CCTCAACTTTTGCTTCTAAG+TGG | - | chr5.2:30940456-30940475 | MS.gene55245:intron | 40.0% |
| ! | CTACACTTTTGATGCTAGGA+AGG | - | chr5.2:30941093-30941112 | MS.gene55245:CDS | 40.0% |
| ! | CTTTTGCTTCTAAGTGGCAT+TGG | - | chr5.2:30940462-30940481 | MS.gene55245:intron | 40.0% |
| ! | GGATCAGGAAGTCTATTTTC+TGG | + | chr5.2:30940597-30940616 | None:intergenic | 40.0% |
| ! | GTGCTACTAATAGAAAGAGG+TGG | - | chr5.2:30939087-30939106 | MS.gene55245:CDS | 40.0% |
| ! | TCTGAAATTGCATTCGCAAC+GGG | + | chr5.2:30939911-30939930 | None:intergenic | 40.0% |
| !! | GAAATGAAACAGGTTGGTCA+AGG | - | chr5.2:30940528-30940547 | MS.gene55245:CDS | 40.0% |
| !! | TCAACTTTTTCTGAGTCACC+AGG | - | chr5.2:30941056-30941075 | MS.gene55245:CDS | 40.0% |
| !! | TCAAGGTACCCTTTTGAAAG+AGG | + | chr5.2:30940729-30940748 | None:intergenic | 40.0% |
| !! | TTGATGCTAGGAAGGTATCA+AGG | - | chr5.2:30941101-30941120 | MS.gene55245:CDS | 40.0% |
| !!! | CGGCCGTAGTTTTAACATTA+TGG | - | chr5.2:30939850-30939869 | MS.gene55245:intron | 40.0% |
| ATCAGGGGAACCAAGATTTC+TGG | - | chr5.2:30939468-30939487 | MS.gene55245:CDS | 45.0% | |
| ATGTTAAAACTACGGCCGGT+CGG | + | chr5.2:30939848-30939867 | None:intergenic | 45.0% | |
| CATCACCCCTTGAAGTTGAA+TGG | + | chr5.2:30940407-30940426 | None:intergenic | 45.0% | |
| CATGGTGTGAGAAAAAAGGG+AGG | + | chr5.2:30939378-30939397 | None:intergenic | 45.0% | |
| CCCCTTGAAGTTGAATGGTT+TGG | + | chr5.2:30940402-30940421 | None:intergenic | 45.0% | |
| GAAAGAGGTGGTTCACCATA+TGG | - | chr5.2:30939099-30939118 | MS.gene55245:CDS | 45.0% | |
| GAAGACACTCCCAGAAATCT+TGG | + | chr5.2:30939481-30939500 | None:intergenic | 45.0% | |
| GGCTCATCAGCTATAAATGG+TGG | - | chr5.2:30939252-30939271 | MS.gene55245:CDS | 45.0% | |
| GGTGGCTCATCAGCTATAAA+TGG | - | chr5.2:30939249-30939268 | MS.gene55245:CDS | 45.0% | |
| GTCACCAGGTACTAATCCTA+TGG | - | chr5.2:30941070-30941089 | MS.gene55245:CDS | 45.0% | |
| GTTATGCCTGCAATTTGTGG+AGG | + | chr5.2:30940618-30940637 | None:intergenic | 45.0% | |
| TACCTCAGCTGATCTTCTTG+AGG | - | chr5.2:30939521-30939540 | MS.gene55245:CDS | 45.0% | |
| TCAGGGGAACCAAGATTTCT+GGG | - | chr5.2:30939469-30939488 | MS.gene55245:CDS | 45.0% | |
| TGCTATCGTGGCCATAATTG+TGG | - | chr5.2:30939950-30939969 | MS.gene55245:intron | 45.0% | |
| TGGAAGATGATGCGACAATC+AGG | + | chr5.2:30939791-30939810 | None:intergenic | 45.0% | |
| TGGCATTCACAAGAACTGTG+AGG | + | chr5.2:30939563-30939582 | None:intergenic | 45.0% | |
| TGGTTGCACTGCAACCATAA+TGG | - | chr5.2:30939709-30939728 | MS.gene55245:CDS | 45.0% | |
| TTCACAGTAGGGTTAAGCCT+TGG | + | chr5.2:30940768-30940787 | None:intergenic | 45.0% | |
| TTGCACTGCAACCATAATGG+TGG | - | chr5.2:30939712-30939731 | MS.gene55245:CDS | 45.0% | |
| ! | ACGGGAATTTTGCCCTACAA+TGG | - | chr5.2:30939429-30939448 | MS.gene55245:CDS | 45.0% |
| ! | ATAGTTGGAGGAGGTACATG+CGG | - | chr5.2:30939027-30939046 | MS.gene55245:CDS | 45.0% |
| ! | GATGGTGTTAGCAATGTGAG+AGG | - | chr5.2:30939216-30939235 | MS.gene55245:CDS | 45.0% |
| ! | GTAGCCATAGGATTAGTACC+TGG | + | chr5.2:30941077-30941096 | None:intergenic | 45.0% |
| ! | TGCTTTGCTGTGATTCACCA+AGG | + | chr5.2:30940887-30940906 | None:intergenic | 45.0% |
| !! | ATTTCTGGGAGTGTCTTCGA+TGG | - | chr5.2:30939483-30939502 | MS.gene55245:CDS | 45.0% |
| !! | TTTCTGGGAGTGTCTTCGAT+GGG | - | chr5.2:30939484-30939503 | MS.gene55245:CDS | 45.0% |
| !!! | CTCCCTTTTTTCTCACACCA+TGG | - | chr5.2:30939376-30939395 | MS.gene55245:CDS | 45.0% |
| AGCCTCAAGAAGATCAGCTG+AGG | + | chr5.2:30939526-30939545 | None:intergenic | 50.0% | |
| CCTGATCCTCCACAAATTGC+AGG | - | chr5.2:30940609-30940628 | MS.gene55245:CDS | 50.0% | |
| CCTGCAATTTGTGGAGGATC+AGG | + | chr5.2:30940612-30940631 | None:intergenic | 50.0% | |
| GATAGCATTGCATTCACGCC+AGG | + | chr5.2:30939937-30939956 | None:intergenic | 50.0% | |
| GCGTGAATGCAATGCTATCG+TGG | - | chr5.2:30939938-30939957 | MS.gene55245:intron | 50.0% | |
| GTGAGAGGAAGAGTTCTTGG+TGG | - | chr5.2:30939231-30939250 | MS.gene55245:CDS | 50.0% | |
| TCAGCTGATCTTCTTGAGGC+TGG | - | chr5.2:30939525-30939544 | MS.gene55245:CDS | 50.0% | |
| AATCGCACTGCATTCGCGAC+AGG | + | chr5.2:30939764-30939783 | None:intergenic | 55.0% | |
| AGGGTCCTGTCACAACTGTG+AGG | - | chr5.2:30939819-30939838 | MS.gene55245:intron | 55.0% | |
| GGATGCCTCACAGTTGTGAC+AGG | + | chr5.2:30939827-30939846 | None:intergenic | 55.0% | |
| ! | ACAACTGTGAGGCATCCGAC+CGG | - | chr5.2:30939830-30939849 | MS.gene55245:intron | 55.0% |
| !! | GGGAGTGTCTTCGATGGGTT+TGG | - | chr5.2:30939489-30939508 | MS.gene55245:CDS | 55.0% |
| AGCTGCATTGCGCTCGTGAC+AGG | + | chr5.2:30940054-30940073 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30938979 | 30941157 | 30938979 | ID=MS.gene55245 |
| chr5.2 | mRNA | 30938979 | 30941157 | 30938979 | ID=MS.gene55245.t1;Parent=MS.gene55245 |
| chr5.2 | exon | 30940524 | 30941157 | 30940524 | ID=MS.gene55245.t1.exon1;Parent=MS.gene55245.t1 |
| chr5.2 | CDS | 30940524 | 30941157 | 30940524 | ID=cds.MS.gene55245.t1;Parent=MS.gene55245.t1 |
| chr5.2 | exon | 30938979 | 30939826 | 30938979 | ID=MS.gene55245.t1.exon2;Parent=MS.gene55245.t1 |
| chr5.2 | CDS | 30938979 | 30939826 | 30938979 | ID=cds.MS.gene55245.t1;Parent=MS.gene55245.t1 |
| Gene Sequence |
| Protein sequence |
