AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55426

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55426.t1 MTR_6g021950 99.505 404 2 0 1 404 1 404 0.0 835
MS.gene55426.t1 MTR_4g104320 80.890 382 72 1 24 404 26 407 0.0 635
MS.gene55426.t1 MTR_3g075320 75.931 403 97 0 2 404 4 406 0.0 618
MS.gene55426.t1 MTR_3g086310 75.448 391 93 2 14 404 16 403 0.0 586
MS.gene55426.t1 MTR_1g047370 68.146 383 122 0 22 404 68 450 0.0 565
MS.gene55426.t1 MTR_7g059290 66.062 386 131 0 19 404 59 444 0.0 550
MS.gene55426.t1 MTR_3g086320 66.339 407 133 4 1 404 1 406 0.0 533
MS.gene55426.t1 MTR_1g062930 62.760 384 136 1 26 402 34 417 0.0 518
MS.gene55426.t1 MTR_1g111590 65.147 373 127 1 27 396 35 407 0.0 518
MS.gene55426.t1 MTR_7g102940 61.042 403 155 2 1 402 11 412 4.31e-179 507
MS.gene55426.t1 MTR_4g107870 57.487 374 154 3 34 404 63 434 6.06e-160 457
MS.gene55426.t1 MTR_3g075320 75.000 284 71 0 2 285 4 287 1.49e-156 443
MS.gene55426.t1 MTR_5g038510 56.250 368 160 1 38 404 82 449 2.96e-153 441
MS.gene55426.t1 MTR_8g468980 53.616 401 170 4 20 404 55 455 3.80e-151 436
MS.gene55426.t1 MTR_4g132460 60.857 350 133 3 56 404 39 385 4.90e-151 432
MS.gene55426.t1 MTR_5g038490 55.928 388 162 3 26 404 62 449 5.96e-150 432
MS.gene55426.t1 MTR_6g011420 53.299 394 171 3 24 404 60 453 3.54e-146 423
MS.gene55426.t1 MTR_2g023990 52.278 417 178 6 1 404 1 409 3.66e-146 421
MS.gene55426.t1 MTR_7g009390 58.192 354 147 1 52 404 98 451 8.52e-143 414
MS.gene55426.t1 MTR_8g078390 45.480 354 185 6 56 404 42 392 2.48e-98 298
MS.gene55426.t1 MTR_3g030900 45.198 354 186 6 56 404 23 373 6.21e-97 294
MS.gene55426.t1 MTR_8g078310 45.198 354 186 6 56 404 42 392 1.09e-96 294
MS.gene55426.t1 MTR_3g070740 65.854 205 57 2 201 404 134 326 2.81e-91 278
MS.gene55426.t1 MTR_8g078350 45.198 354 186 6 56 404 42 392 4.67e-91 280
MS.gene55426.t1 MTR_4g064420 44.540 348 172 7 56 400 42 371 2.73e-89 276
MS.gene55426.t1 MTR_8g078280 43.503 354 192 6 56 404 42 392 3.55e-89 275
MS.gene55426.t1 MTR_5g019060 42.373 354 196 6 56 404 41 391 8.47e-84 261
MS.gene55426.t1 MTR_5g035840 42.373 354 196 6 56 404 41 391 1.94e-83 260
MS.gene55426.t1 MTR_5g019160 42.090 354 197 6 56 404 41 391 4.75e-83 259
MS.gene55426.t1 MTR_5g019090 42.090 354 197 6 56 404 41 391 1.44e-80 253
MS.gene55426.t1 MTR_5g019170 42.609 345 190 6 56 395 41 382 1.49e-80 254
MS.gene55426.t1 MTR_2g023980 50.584 257 93 6 131 385 1 225 6.66e-73 231
MS.gene55426.t1 MTR_1g069950 43.657 268 147 3 131 396 1 266 2.57e-68 217
MS.gene55426.t1 MTR_6g077900 44.043 277 134 6 89 364 6 262 1.62e-58 192
MS.gene55426.t1 MTR_1g115550 38.699 292 153 7 69 359 9 275 9.43e-50 171
MS.gene55426.t1 MTR_1g067450 36.491 285 157 4 75 359 64 324 8.39e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55426.t1 AT5G63180 73.020 404 106 2 4 404 29 432 0.0 613
MS.gene55426.t1 AT3G27400 72.457 403 105 2 7 404 15 416 0.0 612
MS.gene55426.t1 AT3G27400 72.457 403 105 2 7 404 11 412 0.0 612
MS.gene55426.t1 AT1G67750 74.036 389 99 1 16 404 22 408 0.0 605
MS.gene55426.t1 AT4G24780 73.116 398 105 2 8 404 12 408 0.0 592
MS.gene55426.t1 AT4G24780 73.116 398 105 2 8 404 12 408 0.0 592
MS.gene55426.t1 AT4G13710 66.667 393 127 1 16 404 78 470 0.0 588
MS.gene55426.t1 AT4G13710 66.667 393 127 1 16 404 59 451 0.0 585
MS.gene55426.t1 AT3G07010 68.317 404 121 1 8 404 13 416 0.0 571
MS.gene55426.t1 AT3G07010 71.088 377 109 0 28 404 7 383 0.0 566
MS.gene55426.t1 AT1G04680 67.617 386 121 1 23 404 44 429 0.0 554
MS.gene55426.t1 AT3G24670 68.586 382 120 0 23 404 59 440 0.0 550
MS.gene55426.t1 AT3G24230 65.026 386 130 2 23 404 67 451 0.0 543
MS.gene55426.t1 AT5G48900 64.663 416 133 2 3 404 2 417 0.0 534
MS.gene55426.t1 AT4G13210 68.407 383 120 1 23 404 56 438 0.0 526
MS.gene55426.t1 AT4G13210 68.407 383 120 1 23 404 19 401 0.0 524
MS.gene55426.t1 AT3G53190 62.469 405 136 3 7 396 11 414 1.08e-180 511
MS.gene55426.t1 AT5G04310 62.402 383 131 1 27 396 53 435 3.58e-171 487
MS.gene55426.t1 AT5G04310 62.402 383 131 1 27 396 53 435 8.81e-170 485
MS.gene55426.t1 AT5G04310 62.402 383 131 1 27 396 53 435 8.81e-170 485
MS.gene55426.t1 AT3G54920 59.740 385 131 4 27 396 37 412 3.90e-168 480
MS.gene55426.t1 AT5G55720 56.608 401 159 4 5 404 6 392 3.46e-167 474
MS.gene55426.t1 AT1G14420 54.211 380 166 2 33 404 80 459 4.91e-151 436
MS.gene55426.t1 AT1G11920 58.000 350 144 3 56 404 37 384 3.50e-147 423
MS.gene55426.t1 AT5G15110 55.211 355 157 2 52 404 118 472 3.19e-145 421
MS.gene55426.t1 AT3G01270 56.056 355 154 2 52 404 121 475 4.38e-145 421
MS.gene55426.t1 AT4G22090 57.429 350 145 3 56 404 47 393 5.92e-145 417
MS.gene55426.t1 AT4G22080 56.857 350 147 3 56 404 47 393 3.61e-142 410
MS.gene55426.t1 AT2G02720 53.521 355 159 1 56 404 101 455 6.93e-140 407
MS.gene55426.t1 AT1G30350 51.621 401 161 5 4 404 1 368 1.65e-139 403
MS.gene55426.t1 AT5G09280 47.984 248 127 2 89 335 6 252 2.18e-77 241
MS.gene55426.t1 AT3G55140 39.510 286 147 7 75 359 16 276 6.38e-50 171
MS.gene55426.t1 AT3G09540 36.111 288 158 5 73 359 61 323 2.51e-43 155
MS.gene55426.t1 AT3G55140 39.044 251 132 6 110 359 22 252 1.11e-41 149
MS.gene55426.t1 AT3G09540 35.764 288 155 6 73 359 61 319 2.29e-41 150
MS.gene55426.t1 AT3G09540 35.510 245 134 4 73 317 61 281 7.51e-36 133

Find 83 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATTCACAACATATT+TGG 0.148343 6.2:-15445732 MS.gene55426:CDS
TGTCGGTTGTTCTCCCAATT+TGG 0.183698 6.2:+15446159 None:intergenic
GAAGAGGATGAAACAAAATT+TGG 0.190078 6.2:+15447237 None:intergenic
CACCAGAACATAGTGGATTT+TGG 0.212123 6.2:-15445783 MS.gene55426:CDS
ATACATACCTTGGCATTCTT+TGG 0.236926 6.2:+15445515 None:intergenic
ATCTACATTGTCACTGATTC+AGG 0.262745 6.2:-15446075 MS.gene55426:CDS
TCAATTAAAACAAGAACTTT+TGG 0.293810 6.2:-15445956 MS.gene55426:CDS
TCATGACAAAGTTATGCTTT+TGG 0.300199 6.2:-15445614 MS.gene55426:CDS
GCTGATTGTGCAATTGGATT+TGG 0.305034 6.2:-15446129 MS.gene55426:CDS
GTCGGTTGTTCTCCCAATTT+GGG 0.308400 6.2:+15446160 None:intergenic
CAATTCAAGATGAACCATTA+TGG 0.310393 6.2:-15446005 MS.gene55426:CDS
TCCTTGCTAAATCTATTATC+TGG 0.317797 6.2:+15444456 None:intergenic
TACCTTAATGTTCCTGGCTT+AGG 0.318773 6.2:+15446033 None:intergenic
GTTGGAGATGTGACCCAAAT+TGG 0.323275 6.2:-15446173 MS.gene55426:CDS
GGTTCCATCACTACTACTTC+TGG 0.332285 6.2:-15444267 MS.gene55426:CDS
GCACCATACCTTAATGTTCC+TGG 0.337883 6.2:+15446027 None:intergenic
TTCCCTTGGCTGTTGATTGT+AGG 0.338196 6.2:+15444492 None:intergenic
ACCTTAATGTTCCTGGCTTA+GGG 0.354026 6.2:+15446034 None:intergenic
ACATCTTGTACAACAAGTTC+AGG 0.356255 6.2:+15447204 None:intergenic
AGACTAGCTGATTGTGCAAT+TGG 0.358822 6.2:-15446135 MS.gene55426:CDS
ACCCTAAGCCAGGAACATTA+AGG 0.369613 6.2:-15446035 MS.gene55426:CDS
GGTCTTATTGATGTTATTCA+TGG 0.370022 6.2:-15445676 MS.gene55426:CDS
GTGAATATAATAGCTGGAAT+TGG 0.370547 6.2:-15444404 MS.gene55426:CDS
CACAATCAGCTAGTCTTTGT+CGG 0.381751 6.2:+15446142 None:intergenic
GCAAGACCAGCCTCTCTTGT+TGG 0.384223 6.2:-15444288 MS.gene55426:CDS
GAGGGTGATTTGTTCTTGAA+TGG 0.394829 6.2:-15444375 MS.gene55426:CDS
CTCTAGGTCTAGGAGAAACT+TGG 0.396252 6.2:-15446235 MS.gene55426:CDS
AAGAGGATGAAACAAAATTT+GGG 0.396495 6.2:+15447238 None:intergenic
GGCTATTTATCATGTGGAAC+TGG 0.405816 6.2:-15446213 MS.gene55426:CDS
GTTCATGATTGTGTTCCAAC+GGG 0.420422 6.2:-15445826 MS.gene55426:CDS
GGAGCATTCTTTAGACAAAC+TGG 0.421504 6.2:-15444354 MS.gene55426:CDS
TCCCTTGGCTGTTGATTGTA+GGG 0.426471 6.2:+15444493 None:intergenic
AATTCATACAAGACAATTGA+TGG 0.427271 6.2:-15445931 MS.gene55426:CDS
GATCATATTCAAAAGAGATA+TGG 0.439191 6.2:-15445983 MS.gene55426:CDS
GCAATCCAATTGATGATTGT+TGG 0.439325 6.2:-15446191 MS.gene55426:CDS
CATCTCCAACAATCATCAAT+TGG 0.440002 6.2:+15446186 None:intergenic
GAACAATGATTACACACATT+GGG 0.453403 6.2:-15444544 MS.gene55426:CDS
GTTAATAATGTTATAATACA+TGG 0.461906 6.2:-15445856 MS.gene55426:CDS
GGATTTGGAAAAGATGCAAT+TGG 0.464882 6.2:-15446114 MS.gene55426:CDS
CAGAAAGTGAATATAATAGC+TGG 0.465031 6.2:-15444410 MS.gene55426:CDS
GTCCAAAATCCACTATGTTC+TGG 0.466293 6.2:+15445781 None:intergenic
GTGCAAGAAATCTGTTCCCT+TGG 0.476596 6.2:+15444478 None:intergenic
CTAATATTTGTGTTCCCCGT+TGG 0.486392 6.2:+15445811 None:intergenic
GCATCAATGTCTCTAGGTCT+AGG 0.489694 6.2:-15446245 MS.gene55426:CDS
TTGGAGATGTGACCCAAATT+GGG 0.502512 6.2:-15446172 MS.gene55426:CDS
TGCACTAAGACTTGAAGCTC+TGG 0.504961 6.2:+15444308 None:intergenic
GTAGGAGCATCAATGTCTCT+AGG 0.514562 6.2:-15446251 MS.gene55426:intron
GGTGTGCTCACTTGCAAGAA+GGG 0.516097 6.2:-15444246 MS.gene55426:CDS
TGGTGTGCTCACTTGCAAGA+AGG 0.516822 6.2:-15444247 MS.gene55426:CDS
AGCTGGAATTGGAGATCAGA+GGG 0.527960 6.2:-15444393 MS.gene55426:CDS
TCTTTGTCTAATTGTCGTGA+TGG 0.533384 6.2:-15445697 MS.gene55426:CDS
CATTGGGAAATGTATGCAAT+TGG 0.540092 6.2:-15444528 MS.gene55426:CDS
ATGGAACCAACAAGAGAGGC+TGG 0.542918 6.2:+15444282 None:intergenic
TGTTCATGATTGTGTTCCAA+CGG 0.543560 6.2:-15445827 MS.gene55426:CDS
TGAACAATGATTACACACAT+TGG 0.549687 6.2:-15444545 MS.gene55426:CDS
GTGACCTGCATGTCCTTGTC+CGG 0.551806 6.2:+15445571 None:intergenic
TACACCGGACAAGGACATGC+AGG 0.561475 6.2:-15445575 MS.gene55426:CDS
TACAAGACAATTGATGGAAG+AGG 0.566366 6.2:-15445925 MS.gene55426:CDS
AATTCCATCACCATCTGAAA+CGG 0.566606 6.2:+15445759 None:intergenic
ACCAGATAATAGATTTAGCA+AGG 0.568377 6.2:-15444457 MS.gene55426:CDS
AACTTGGGCTATTTATCATG+TGG 0.574554 6.2:-15446219 MS.gene55426:CDS
TGGACCGTTTCAGATGGTGA+TGG 0.575388 6.2:-15445763 MS.gene55426:CDS
AAGCCAGGAACATTAAGGTA+TGG 0.578760 6.2:-15446030 MS.gene55426:CDS
TTCAGGGTCTTGAACTGAAG+AGG 0.579107 6.2:+15447221 None:intergenic
AACCCTACAATCAACAGCCA+AGG 0.581103 6.2:-15444495 MS.gene55426:CDS
GCTAGTGTTCACATTGCAAA+TGG 0.586396 6.2:-15445901 MS.gene55426:CDS
ACATAGTGATTCTTATACAC+CGG 0.587740 6.2:-15445590 MS.gene55426:CDS
TGGGAAATGTATGCAATTGG+TGG 0.593671 6.2:-15444525 MS.gene55426:CDS
CATCTTGTACAACAAGTTCA+GGG 0.601679 6.2:+15447205 None:intergenic
CACACCAGAAGTAGTAGTGA+TGG 0.602959 6.2:+15444263 None:intergenic
GATGCAGTAAACCCTAAGCC+AGG 0.603794 6.2:-15446045 MS.gene55426:CDS
TTTGGAAAAGATGCAATTGG+TGG 0.625951 6.2:-15446111 MS.gene55426:CDS
TGATTCTTATACACCGGACA+AGG 0.630256 6.2:-15445584 MS.gene55426:CDS
TCTAGGTCTAGGAGAAACTT+GGG 0.631443 6.2:-15446234 MS.gene55426:CDS
ACCCTACAATCAACAGCCAA+GGG 0.633679 6.2:-15444494 MS.gene55426:CDS
AGAGACTCACCAGAACATAG+TGG 0.640397 6.2:-15445790 MS.gene55426:CDS
AGTGTTCACATTGCAAATGG+TGG 0.646316 6.2:-15445898 MS.gene55426:CDS
TAGCTGGAATTGGAGATCAG+AGG 0.658304 6.2:-15444394 MS.gene55426:CDS
GGGAAATGTATGCAATTGGT+GGG 0.659423 6.2:-15444524 MS.gene55426:CDS
AGTGATGGAACCAACAAGAG+AGG 0.669990 6.2:+15444278 None:intergenic
TTCATGATTGTGTTCCAACG+GGG 0.684589 6.2:-15445825 MS.gene55426:CDS
TTGTTGTACAAGATGTACAA+AGG 0.691137 6.2:-15447197 MS.gene55426:intron
GGCTTGTCCAAAGAATGCCA+AGG 0.703891 6.2:-15445522 MS.gene55426:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAATATATATAATTAACT+TGG + chr6.2:15445169-15445188 None:intergenic 10.0%
!!! ACATTTTTTTTTATGTTTAT+GGG + chr6.2:15446611-15446630 None:intergenic 10.0%
!!! TACATTTTTTTTTATGTTTA+TGG + chr6.2:15446612-15446631 None:intergenic 10.0%
!!! TGTTTTTTTTTTTTTTGAAA+AGG - chr6.2:15444992-15445011 MS.gene55426:intron 10.0%
!! CAATCACAAATAAAATTATT+TGG + chr6.2:15446280-15446299 None:intergenic 15.0%
!! CTGAAAACAATAATTATTTA+TGG + chr6.2:15446924-15446943 None:intergenic 15.0%
!! GCTAAAAAAAATAACATTAA+AGG + chr6.2:15446060-15446079 None:intergenic 15.0%
!! GTTAATAATGTTATAATACA+TGG - chr6.2:15445659-15445678 MS.gene55426:CDS 15.0%
!!! AATACTTTTTTCTTTCTAAA+TGG + chr6.2:15444943-15444962 None:intergenic 15.0%
!!! ATACTTTTTTCTTTCTAAAT+GGG + chr6.2:15444942-15444961 None:intergenic 15.0%
!!! ATAGAATTTAATTTCTATCA+CGG - chr6.2:15446328-15446347 MS.gene55426:intron 15.0%
!!! ATGTTATTTTTTTTAGCATA+TGG - chr6.2:15446063-15446082 MS.gene55426:CDS 15.0%
!!! ATTTTAATTTCTCTTTTTGT+AGG - chr6.2:15445246-15445265 MS.gene55426:intron 15.0%
!!! TTGAATTTTTTAAGGTAATT+AGG + chr6.2:15446799-15446818 None:intergenic 15.0%
!!! TTTAGAAAGAAAAAAGTATT+TGG - chr6.2:15444943-15444962 MS.gene55426:intron 15.0%
!! AAATTCAAAAAGTAGGATAA+AGG - chr6.2:15446811-15446830 MS.gene55426:intron 20.0%
!! CCTTAAAAAATTCAAAAAGT+AGG - chr6.2:15446804-15446823 MS.gene55426:intron 20.0%
!! TGTTTAATTCACAACATATT+TGG - chr6.2:15445783-15445802 MS.gene55426:CDS 20.0%
!!! ACTATTGCTTTTAATCATTT+TGG - chr6.2:15445965-15445984 MS.gene55426:CDS 20.0%
!!! ATTTGGCTTGTTAAAAAAAA+AGG - chr6.2:15444960-15444979 MS.gene55426:intron 20.0%
!!! CCTACTTTTTGAATTTTTTA+AGG + chr6.2:15446807-15446826 None:intergenic 20.0%
!!! CTTTTTTTTAAAAAGAGAAC+CGG - chr6.2:15446187-15446206 MS.gene55426:CDS 20.0%
!!! TAAACATGTTTTATTCAACT+AGG + chr6.2:15444584-15444603 None:intergenic 20.0%
!!! TCAATTAAAACAAGAACTTT+TGG - chr6.2:15445559-15445578 MS.gene55426:CDS 20.0%
!!! TGCTCAAACTTTTTTAATTT+GGG + chr6.2:15446158-15446177 None:intergenic 20.0%
! AAAGTTTGATTCATACGTAA+TGG - chr6.2:15444451-15444470 MS.gene55426:CDS 25.0%
! AAGAGGATGAAACAAAATTT+GGG + chr6.2:15444280-15444299 None:intergenic 25.0%
! AATTCATACAAGACAATTGA+TGG - chr6.2:15445584-15445603 MS.gene55426:CDS 25.0%
! GATCATATTCAAAAGAGATA+TGG - chr6.2:15445532-15445551 MS.gene55426:CDS 25.0%
! GCTATTATGAGATATTTAGA+AGG + chr6.2:15446667-15446686 None:intergenic 25.0%
! GTAAAAAAAAAAGTCATGCA+TGG - chr6.2:15446085-15446104 MS.gene55426:CDS 25.0%
! GTTTAATTATTGTACATCGA+CGG - chr6.2:15445082-15445101 MS.gene55426:intron 25.0%
! TGAGTGTTTGAACAAATAAT+AGG + chr6.2:15446870-15446889 None:intergenic 25.0%
! TGTCATATATATACATACCT+TGG + chr6.2:15446013-15446032 None:intergenic 25.0%
!! AGATTTTCTTAGTGCTTATT+TGG - chr6.2:15446391-15446410 MS.gene55426:intron 25.0%
!! CACATTAGATACAATGTTTT+TGG + chr6.2:15444477-15444496 None:intergenic 25.0%
!! CTTTTGAATATGATCCATAA+TGG + chr6.2:15445527-15445546 None:intergenic 25.0%
!!! CGGTTCTCTTTTTAAAAAAA+AGG + chr6.2:15446189-15446208 None:intergenic 25.0%
!!! CTTTTAATCATTTTGGTGAA+GGG - chr6.2:15445972-15445991 MS.gene55426:CDS 25.0%
!!! GTGCTCAAACTTTTTTAATT+TGG + chr6.2:15446159-15446178 None:intergenic 25.0%
AAGAAAATCTCATTGCAGTT+GGG + chr6.2:15446381-15446400 None:intergenic 30.0%
ACATAGTGATTCTTATACAC+CGG - chr6.2:15445925-15445944 MS.gene55426:CDS 30.0%
ACCAGATAATAGATTTAGCA+AGG - chr6.2:15447058-15447077 MS.gene55426:intron 30.0%
ATATGTAAGACCAACACTTT+GGG - chr6.2:15446303-15446322 MS.gene55426:intron 30.0%
CAATTCAAGATGAACCATTA+TGG - chr6.2:15445510-15445529 MS.gene55426:intron 30.0%
CAGAAAGTGAATATAATAGC+TGG - chr6.2:15447105-15447124 MS.gene55426:intron 30.0%
GAACAATGATTACACACATT+GGG - chr6.2:15446971-15446990 MS.gene55426:intron 30.0%
GAAGAGGATGAAACAAAATT+TGG + chr6.2:15444281-15444300 None:intergenic 30.0%
GTCATGATACTACTAAGAAA+GGG + chr6.2:15446710-15446729 None:intergenic 30.0%
GTGAATATAATAGCTGGAAT+TGG - chr6.2:15447111-15447130 MS.gene55426:intron 30.0%
GTTGTTCAACATCATTAAAC+CGG + chr6.2:15446209-15446228 None:intergenic 30.0%
TAAGAAAATCTCATTGCAGT+TGG + chr6.2:15446382-15446401 None:intergenic 30.0%
TATATGTAAGACCAACACTT+TGG - chr6.2:15446302-15446321 MS.gene55426:intron 30.0%
TCAACTAGGTCATCTAATAT+GGG + chr6.2:15444570-15444589 None:intergenic 30.0%
TCCTTGCTAAATCTATTATC+TGG + chr6.2:15447062-15447081 None:intergenic 30.0%
TGAACAATGATTACACACAT+TGG - chr6.2:15446970-15446989 MS.gene55426:intron 30.0%
TTCAACTAGGTCATCTAATA+TGG + chr6.2:15444571-15444590 None:intergenic 30.0%
TTCTCAACTTCATAAAAGCA+CGG - chr6.2:15446482-15446501 MS.gene55426:intron 30.0%
TTGTTGTACAAGATGTACAA+AGG - chr6.2:15444318-15444337 MS.gene55426:CDS 30.0%
TTTCTTAGTGCTTATTTGGA+TGG - chr6.2:15446395-15446414 MS.gene55426:intron 30.0%
! AATGGGTTTATAAGACAATG+TGG + chr6.2:15444925-15444944 None:intergenic 30.0%
! ATTGTTTTCAGATGTAGACA+TGG - chr6.2:15446933-15446952 MS.gene55426:intron 30.0%
! CATGACAAAGTTATGCTTTT+GGG - chr6.2:15445902-15445921 MS.gene55426:CDS 30.0%
! GCTTTTATGAAGTTGAGAAT+TGG + chr6.2:15446481-15446500 None:intergenic 30.0%
! GTTTAATAGAAGTGCATTGT+TGG - chr6.2:15444861-15444880 MS.gene55426:intron 30.0%
! TCATGACAAAGTTATGCTTT+TGG - chr6.2:15445901-15445920 MS.gene55426:CDS 30.0%
!! GCTTTTAATCATTTTGGTGA+AGG - chr6.2:15445971-15445990 MS.gene55426:CDS 30.0%
!! GGTCTTATTGATGTTATTCA+TGG - chr6.2:15445839-15445858 MS.gene55426:CDS 30.0%
!! TAGACATGGTTATTTTCATG+TGG - chr6.2:15446947-15446966 MS.gene55426:intron 30.0%
!!! TTAAGTCTCTACCTTGTTTT+TGG + chr6.2:15446744-15446763 None:intergenic 30.0%
AACTTGGGCTATTTATCATG+TGG - chr6.2:15445296-15445315 MS.gene55426:intron 35.0%
AATTCCATCACCATCTGAAA+CGG + chr6.2:15445759-15445778 None:intergenic 35.0%
AATTCTATCTCCCAAAGTGT+TGG + chr6.2:15446316-15446335 None:intergenic 35.0%
ACAATGTGGTGAATTATCAC+TGG + chr6.2:15444911-15444930 None:intergenic 35.0%
ACATCTTGTACAACAAGTTC+AGG + chr6.2:15444314-15444333 None:intergenic 35.0%
ATACATACCTTGGCATTCTT+TGG + chr6.2:15446003-15446022 None:intergenic 35.0%
CATCTCCAACAATCATCAAT+TGG + chr6.2:15445332-15445351 None:intergenic 35.0%
CATCTTGTACAACAAGTTCA+GGG + chr6.2:15444313-15444332 None:intergenic 35.0%
CATTGGGAAATGTATGCAAT+TGG - chr6.2:15446987-15447006 MS.gene55426:intron 35.0%
CGTCATGATACTACTAAGAA+AGG + chr6.2:15446711-15446730 None:intergenic 35.0%
GGATTTGGAAAAGATGCAAT+TGG - chr6.2:15445401-15445420 MS.gene55426:intron 35.0%
GGTTAGCAAAAATGTGTCTT+TGG - chr6.2:15446106-15446125 MS.gene55426:CDS 35.0%
TACAAGACAATTGATGGAAG+AGG - chr6.2:15445590-15445609 MS.gene55426:CDS 35.0%
TAGCAAAAATGTGTCTTTGG+AGG - chr6.2:15446109-15446128 MS.gene55426:CDS 35.0%
TCTTTGTCTAATTGTCGTGA+TGG - chr6.2:15445818-15445837 MS.gene55426:CDS 35.0%
TGATACTACTAAGAAAGGGT+TGG + chr6.2:15446706-15446725 None:intergenic 35.0%
TGTTCATGATTGTGTTCCAA+CGG - chr6.2:15445688-15445707 MS.gene55426:CDS 35.0%
TTAGTGCTTATTTGGATGGA+CGG - chr6.2:15446399-15446418 MS.gene55426:intron 35.0%
TTGGAGTTTCTGTGTTAAAG+TGG + chr6.2:15446462-15446481 None:intergenic 35.0%
TTTGGAAAAGATGCAATTGG+TGG - chr6.2:15445404-15445423 MS.gene55426:intron 35.0%
! GATGCAATTGGTGGTAAAAA+TGG - chr6.2:15445413-15445432 MS.gene55426:intron 35.0%
! GCAATCCAATTGATGATTGT+TGG - chr6.2:15445324-15445343 MS.gene55426:intron 35.0%
! TCACCTTTTGCTTGAAATCA+CGG - chr6.2:15446429-15446448 MS.gene55426:intron 35.0%
!! ATCTACATTGTCACTGATTC+AGG - chr6.2:15445440-15445459 MS.gene55426:intron 35.0%
!!! CTACCTTGTTTTTGGTTCAA+TGG + chr6.2:15446736-15446755 None:intergenic 35.0%
AAGCCAGGAACATTAAGGTA+TGG - chr6.2:15445485-15445504 MS.gene55426:intron 40.0%
ACCTTAATGTTCCTGGCTTA+GGG + chr6.2:15445484-15445503 None:intergenic 40.0%
AGTGTTCACATTGCAAATGG+TGG - chr6.2:15445617-15445636 MS.gene55426:CDS 40.0%
CATTGCAGTTGGGAATAAGT+GGG + chr6.2:15446371-15446390 None:intergenic 40.0%
CTAATATTTGTGTTCCCCGT+TGG + chr6.2:15445707-15445726 None:intergenic 40.0%
CTAGGTCATCTAATATGGGA+CGG + chr6.2:15444566-15444585 None:intergenic 40.0%
GCTAGTGTTCACATTGCAAA+TGG - chr6.2:15445614-15445633 MS.gene55426:CDS 40.0%
GCTCCATTGAACCAAAAACA+AGG - chr6.2:15446730-15446749 MS.gene55426:intron 40.0%
GCTGATTGTGCAATTGGATT+TGG - chr6.2:15445386-15445405 MS.gene55426:intron 40.0%
GGCTATTTATCATGTGGAAC+TGG - chr6.2:15445302-15445321 MS.gene55426:intron 40.0%
GGGAAATGTATGCAATTGGT+GGG - chr6.2:15446991-15447010 MS.gene55426:intron 40.0%
GGTGAATTATCACTGGATGT+CGG + chr6.2:15444904-15444923 None:intergenic 40.0%
GTCCAAAATCCACTATGTTC+TGG + chr6.2:15445737-15445756 None:intergenic 40.0%
GTTCATGATTGTGTTCCAAC+GGG - chr6.2:15445689-15445708 MS.gene55426:CDS 40.0%
TACCTTAATGTTCCTGGCTT+AGG + chr6.2:15445485-15445504 None:intergenic 40.0%
TCATTGCAGTTGGGAATAAG+TGG + chr6.2:15446372-15446391 None:intergenic 40.0%
TCTAGGTCTAGGAGAAACTT+GGG - chr6.2:15445281-15445300 MS.gene55426:intron 40.0%
TGATTCTTATACACCGGACA+AGG - chr6.2:15445931-15445950 MS.gene55426:CDS 40.0%
TGGGAAATGTATGCAATTGG+TGG - chr6.2:15446990-15447009 MS.gene55426:intron 40.0%
TTCATGATTGTGTTCCAACG+GGG - chr6.2:15445690-15445709 MS.gene55426:CDS 40.0%
TTGCCGTGATTTCAAGCAAA+AGG + chr6.2:15446435-15446454 None:intergenic 40.0%
TTGGAGATGTGACCCAAATT+GGG - chr6.2:15445343-15445362 MS.gene55426:intron 40.0%
! AGACTAGCTGATTGTGCAAT+TGG - chr6.2:15445380-15445399 MS.gene55426:intron 40.0%
! GGAGCATTCTTTAGACAAAC+TGG - chr6.2:15447161-15447180 MS.gene55426:intron 40.0%
!! CACAATCAGCTAGTCTTTGT+CGG + chr6.2:15445376-15445395 None:intergenic 40.0%
!! GAGGGTGATTTGTTCTTGAA+TGG - chr6.2:15447140-15447159 MS.gene55426:intron 40.0%
!!! CACCAGAACATAGTGGATTT+TGG - chr6.2:15445732-15445751 MS.gene55426:CDS 40.0%
AACCCTACAATCAACAGCCA+AGG - chr6.2:15447020-15447039 MS.gene55426:intron 45.0%
ACCCTAAGCCAGGAACATTA+AGG - chr6.2:15445480-15445499 MS.gene55426:intron 45.0%
ACCCTACAATCAACAGCCAA+GGG - chr6.2:15447021-15447040 MS.gene55426:intron 45.0%
AGAGACTCACCAGAACATAG+TGG - chr6.2:15445725-15445744 MS.gene55426:CDS 45.0%
AGCTGGAATTGGAGATCAGA+GGG - chr6.2:15447122-15447141 MS.gene55426:intron 45.0%
ATGTAGATATCCCCGCAAGT+GGG - chr6.2:15446583-15446602 MS.gene55426:intron 45.0%
CACACCAGAAGTAGTAGTGA+TGG + chr6.2:15447255-15447274 None:intergenic 45.0%
CACTGGATGTCGGTGTAAAA+TGG + chr6.2:15444894-15444913 None:intergenic 45.0%
CGGGGATATCTACATAGATG+GGG + chr6.2:15446578-15446597 None:intergenic 45.0%
CTCTAGGTCTAGGAGAAACT+TGG - chr6.2:15445280-15445299 MS.gene55426:intron 45.0%
GACATAGTGCGTGTTTGGAA+TGG + chr6.2:15446556-15446575 None:intergenic 45.0%
GCACCATACCTTAATGTTCC+TGG + chr6.2:15445491-15445510 None:intergenic 45.0%
GCATCAATGTCTCTAGGTCT+AGG - chr6.2:15445270-15445289 MS.gene55426:intron 45.0%
GCGGGGATATCTACATAGAT+GGG + chr6.2:15446579-15446598 None:intergenic 45.0%
GGTTCCATCACTACTACTTC+TGG - chr6.2:15447248-15447267 MS.gene55426:CDS 45.0%
GTCGGTTGTTCTCCCAATTT+GGG + chr6.2:15445358-15445377 None:intergenic 45.0%
GTGCAAGAAATCTGTTCCCT+TGG + chr6.2:15447040-15447059 None:intergenic 45.0%
GTTGGAGATGTGACCCAAAT+TGG - chr6.2:15445342-15445361 MS.gene55426:intron 45.0%
TAGCTGGAATTGGAGATCAG+AGG - chr6.2:15447121-15447140 MS.gene55426:intron 45.0%
TATGTAGATATCCCCGCAAG+TGG - chr6.2:15446582-15446601 MS.gene55426:intron 45.0%
TGCACTAAGACTTGAAGCTC+TGG + chr6.2:15447210-15447229 None:intergenic 45.0%
TGCGGGGATATCTACATAGA+TGG + chr6.2:15446580-15446599 None:intergenic 45.0%
TGTTTATGGGTTCCCACTTG+CGG + chr6.2:15446598-15446617 None:intergenic 45.0%
TTCAGGGTCTTGAACTGAAG+AGG + chr6.2:15444297-15444316 None:intergenic 45.0%
! AGTGATGGAACCAACAAGAG+AGG + chr6.2:15447240-15447259 None:intergenic 45.0%
! GGATTTTGGACCGTTTCAGA+TGG - chr6.2:15445746-15445765 MS.gene55426:CDS 45.0%
! TCCCTTGGCTGTTGATTGTA+GGG + chr6.2:15447025-15447044 None:intergenic 45.0%
! TGTCGGTTGTTCTCCCAATT+TGG + chr6.2:15445359-15445378 None:intergenic 45.0%
! TTCCCTTGGCTGTTGATTGT+AGG + chr6.2:15447026-15447045 None:intergenic 45.0%
!! GTAGGAGCATCAATGTCTCT+AGG - chr6.2:15445264-15445283 MS.gene55426:intron 45.0%
ATGGAACCAACAAGAGAGGC+TGG + chr6.2:15447236-15447255 None:intergenic 50.0%
ATGGGGACATAGTGCGTGTT+TGG + chr6.2:15446561-15446580 None:intergenic 50.0%
GATGCAGTAAACCCTAAGCC+AGG - chr6.2:15445470-15445489 MS.gene55426:intron 50.0%
GGCTTGTCCAAAGAATGCCA+AGG - chr6.2:15445993-15446012 MS.gene55426:CDS 50.0%
GGTGTGCTCACTTGCAAGAA+GGG - chr6.2:15447269-15447288 MS.gene55426:CDS 50.0%
GTTTATGGGTTCCCACTTGC+GGG + chr6.2:15446597-15446616 None:intergenic 50.0%
TGGACCGTTTCAGATGGTGA+TGG - chr6.2:15445752-15445771 MS.gene55426:CDS 50.0%
TGGTGTGCTCACTTGCAAGA+AGG - chr6.2:15447268-15447287 MS.gene55426:CDS 50.0%
TTTATGGGTTCCCACTTGCG+GGG + chr6.2:15446596-15446615 None:intergenic 50.0%
GCAAGACCAGCCTCTCTTGT+TGG - chr6.2:15447227-15447246 MS.gene55426:CDS 55.0%
GTGACCTGCATGTCCTTGTC+CGG + chr6.2:15445947-15445966 None:intergenic 55.0%
TACACCGGACAAGGACATGC+AGG - chr6.2:15445940-15445959 MS.gene55426:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 15444233 15447304 15444233 ID=MS.gene55426
chr6.2 mRNA 15444233 15447304 15444233 ID=MS.gene55426.t1;Parent=MS.gene55426
chr6.2 exon 15447198 15447304 15447198 ID=MS.gene55426.t1.exon1;Parent=MS.gene55426.t1
chr6.2 CDS 15447198 15447304 15447198 ID=cds.MS.gene55426.t1;Parent=MS.gene55426.t1
chr6.2 exon 15445523 15446269 15445523 ID=MS.gene55426.t1.exon2;Parent=MS.gene55426.t1
chr6.2 CDS 15445523 15446269 15445523 ID=cds.MS.gene55426.t1;Parent=MS.gene55426.t1
chr6.2 exon 15444233 15444593 15444233 ID=MS.gene55426.t1.exon3;Parent=MS.gene55426.t1
chr6.2 CDS 15444233 15444593 15444233 ID=cds.MS.gene55426.t1;Parent=MS.gene55426.t1
Gene Sequence

>MS.gene55426

ATGACTTCTCTTTCATACTTTCTCATTCTTTTTGCTCTTCTAATCCCAAATTTTGTTTCATCCTCTTCAGTTCAAGACCCTGAACTTGTTGTACAAGATGTACAAAGGTAATAACATTTATTTATTTCTTAATTATTTTGTGTTATGTGTACTCACTCTAGCTACATTATTCATTTCATGAGTATTTCAATCAACAATTTCATTAAGTTTATTGCATAAAAGTTTGATTCATACGTAATGGCCAAAAACATTGTATCTAATGTGAGCATAAAACATGTTTACACAAACATAGTTTTACGTTAAAGCATGCATAAAAATAAAATACTTCATCCGTCCCATATTAGATGACCTAGTTGAATAAAACATGTTTACACATGCATCTAGTGACATATGATAAAATAAATATTTTGTGCATCTAACATAACAAAGTGATATCATAGAGTAGTTTGTTTGAGTGCATGTATAATTTTTTTACACTATCAATGCATAGCAATTAGTCTCAAAGCTCATATATGTGTTATTTCTACATTTGATTATAAAATCAAAATATCTCAATATCAGCTTAGAAAAAAATTAAAATCAGTTTATTAATGTTGTGAGTTATTTTTCTAAACTCTTCTAAAAACGAGTTTAATAGAAGTGCATTGTTGGTATAAGACCATTTTACACCGACATCCAGTGATAATTCACCACATTGTCTTATAAACCCATTTAGAAAGAAAAAAGTATTTGGCTTGTTAAAAAAAAAGGTCAAGTTCTTGTTTTTTTTTTTTTTGAAAAGGTCAAGTTCTTGTTTTTATCTTCAAACATTTATATGTAAATACTTATGTCATATAATAATTTCAAAGAGTTTAATTATTGTACATCGACGGTTGTAAAGTTACTTTACATATCAATATGTTGTTACATTAATTAATGATGTCAACTTCAACGCCAAGTTAATTATATATATTATGAAAACAAACTAAATTTTCATATAATAATTGTCAGATTTGAATTAATTAGTTAAATTAATTTTAATTTCTCTTTTTGTAGGAGCATCAATGTCTCTAGGTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACTGGCAATCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAGAACAACCGACAAAGACTAGCTGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTACATTGTCACTGATTCAGGTGATGATGATGCAGTAAACCCTAAGCCAGGAACATTAAGGTATGGTGCAATTCAAGATGAACCATTATGGATCATATTCAAAAGAGATATGGTAATTCAATTAAAACAAGAACTTTTGGTAAATTCATACAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCAAATGGTGGATGTATTACAATACATTATGTTAATAATGTTATAATACATGGTATTCATGTTCATGATTGTGTTCCAACGGGGAACACAAATATTAGAGACTCACCAGAACATAGTGGATTTTGGACCGTTTCAGATGGTGATGGAATTTCAGTGTTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGTCTTATTGATGTTATTCATGGATCTAATGCTATTACTATTTCAAATAACTATATGACTCATCATGACAAAGTTATGCTTTTGGGACATAGTGATTCTTATACACCGGACAAGGACATGCAGGTCACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTATGTATATATATGACACTAGAATCTCACTTTTTTTTTTTTCCTTTAATGTTATTTTTTTTAGCATATGGTAAAAAAAAAAGTCATGCATGGTTAGCAAAAATGTGTCTTTGGAGGAGAAATACATGCTTAGCTACAAACCCAAATTAAAAAAGTTTGAGCACGTTTACACCTTTTTTTTAAAAAGAGAACCGGTTTAATGATGTTGAACAACGTGACTAATTTATTTATCTTTTAATTTCTTTCATTATTATGTGTACGTCCAAATAATTTTATTTGTGATTGTGTATATGTAAGACCAACACTTTGGGAGATAGAATTTAATTTCTATCACGGTGTCTTAAAATGTTCGTCCCACTTATTCCCAACTGCAATGAGATTTTCTTAGTGCTTATTTGGATGGACGGTTGTAAATCACCTTTTGCTTGAAATCACGGCAAAAAACCACTTTAACACAGAAACTCCAATTCTCAACTTCATAAAAGCACGGCATGTTTACATTGAATAGTGTGCAAATGTACTTTTGTTTCATCAAACGCCATTCCAAACACGCACTATGTCCCCATCTATGTAGATATCCCCGCAAGTGGGAACCCATAAACATAAAAAAAAATGTAAATTCTATTATTGAAAATTTTGTCATTTCTAACCTTCTAAATATCTCATAATAGCAAATGTCATATTAATACCAACCCTTTCTTAGTAGTATCATGACGCTCCATTGAACCAAAAACAAGGTAGAGACTTAACAAATTCAAAGAAATGTGCATATATACTCATACCTAATTACCTTAAAAAATTCAAAAAGTAGGATAAAGGTTAGTTGTGACTTTTTGATTGAGTTATCTATTGCCTATTATTTGTTCAAACACTCACATGAATACATATAAGCATGAAAATATATAACCATAAATAATTATTGTTTTCAGATGTAGACATGGTTATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGTGGGAGTGCGAACCCTACAATCAACAGCCAAGGGAACAGATTTCTTGCACCAGATAATAGATTTAGCAAGGAAGTAACAAAGCATGAAGATGCATCAGAAAGTGAATATAATAGCTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAATCTTCTTCAATCTATGCCAGAGCTTCAAGTCTTAGTGCAAGACCAGCCTCTCTTGTTGGTTCCATCACTACTACTTCTGGTGTGCTCACTTGCAAGAAGGGCAACCGTTGCTAA
Protein sequence

>MS.gene55426.t1

MTSLSYFLILFALLIPNFVSSSSVQDPELVVQDVQRSINVSRSRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTPDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAESSSIYARASSLSARPASLVGSITTTSGVLTCKKGNRC