Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55740.t1 | XP_013447102.1 | 98.2 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 1.40E-272 | 948.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55740.t1 | P92947 | 76.1 | 490 | 110 | 3 | 1 | 487 | 8 | 493 | 2.0e-216 | 753.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55740.t1 | A0A072U5J4 | 98.2 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 9.7e-273 | 948.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06007 | MS.gene55740 | 0.98453 | 7.89E-161 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003186 | MS.gene55740 | PPI |
| MS.gene02160 | MS.gene55740 | PPI |
| MS.gene02843 | MS.gene55740 | PPI |
| MS.gene048313 | MS.gene55740 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55740.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 0.0 | 984 |
| MS.gene55740.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 0.0 | 982 |
| MS.gene55740.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 10 | 455 | 0.0 | 902 |
| MS.gene55740.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 1 | 446 | 0.0 | 902 |
| MS.gene55740.t1 | MTR_1g060620 | 46.387 | 429 | 205 | 8 | 49 | 464 | 2 | 418 | 1.66e-126 | 375 |
| MS.gene55740.t1 | MTR_7g034715 | 45.047 | 424 | 212 | 9 | 55 | 469 | 7 | 418 | 8.09e-125 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55740.t1 | AT1G63940 | 76.122 | 490 | 110 | 3 | 1 | 487 | 8 | 493 | 0.0 | 756 |
| MS.gene55740.t1 | AT1G63940 | 76.122 | 490 | 110 | 3 | 1 | 487 | 1 | 486 | 0.0 | 756 |
| MS.gene55740.t1 | AT1G63940 | 75.306 | 490 | 110 | 4 | 1 | 487 | 1 | 482 | 0.0 | 741 |
| MS.gene55740.t1 | AT1G63940 | 75.240 | 416 | 96 | 3 | 1 | 413 | 1 | 412 | 0.0 | 631 |
| MS.gene55740.t1 | AT3G52880 | 44.601 | 426 | 211 | 8 | 49 | 461 | 2 | 415 | 2.12e-118 | 355 |
| MS.gene55740.t1 | AT5G03630 | 44.318 | 440 | 220 | 8 | 54 | 480 | 8 | 435 | 9.26e-117 | 350 |
| MS.gene55740.t1 | AT3G52880 | 44.634 | 410 | 202 | 8 | 65 | 461 | 50 | 447 | 2.08e-112 | 340 |
| MS.gene55740.t1 | AT3G27820 | 43.990 | 416 | 214 | 8 | 55 | 463 | 7 | 410 | 2.60e-112 | 341 |
| MS.gene55740.t1 | AT3G09940 | 40.633 | 411 | 216 | 10 | 69 | 464 | 23 | 420 | 3.38e-103 | 316 |
| MS.gene55740.t1 | AT3G09940 | 40.389 | 411 | 209 | 11 | 69 | 464 | 23 | 412 | 4.01e-99 | 305 |
| MS.gene55740.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene55740.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene55740.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene55740.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene55740.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
Find 120 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGAGAAACGGTTGAAAT+TGG | 0.238262 | 4.3:-5407806 | MS.gene55740:CDS |
| TATCCTGCATTTCAGGTTGA+TGG | 0.259570 | 4.3:-5408451 | MS.gene55740:intron |
| TCTGGAAAGCTTCTTAAGTA+TGG | 0.270894 | 4.3:-5410872 | MS.gene55740:CDS |
| ATTAGGTTTCCAGATAAAAT+TGG | 0.282978 | 4.3:-5410730 | MS.gene55740:intron |
| CGTAAGAGGCGTAACATCTA+TGG | 0.323566 | 4.3:+5412102 | None:intergenic |
| CTGTTCCGGACAAGCATTCC+TGG | 0.324547 | 4.3:-5408427 | MS.gene55740:CDS |
| CAAACTTTGACAACAAGTTC+TGG | 0.350397 | 4.3:-5410890 | MS.gene55740:CDS |
| GAGTGAACAATCTTTGTAAA+AGG | 0.353339 | 4.3:+5409506 | None:intergenic |
| AAAACCCTTGAGTAGAAGTA+TGG | 0.356865 | 4.3:+5408031 | None:intergenic |
| ATCAATCGGAGGCTGTCTTC+TGG | 0.360441 | 4.3:+5407297 | None:intergenic |
| GGCTGTCTTCTGGCAAGTTC+AGG | 0.361852 | 4.3:+5407307 | None:intergenic |
| CTTTGTAAAAGGTGATCTTC+AGG | 0.364643 | 4.3:+5409517 | None:intergenic |
| TTCAGGTTGATGGTCTGTTC+CGG | 0.376519 | 4.3:-5408441 | MS.gene55740:intron |
| TGTAGCCGCTTTCCCTTTGA+AGG | 0.382255 | 4.3:-5408386 | MS.gene55740:intron |
| GGGTGCCTCCATTAAAAGTT+TGG | 0.382945 | 4.3:-5409048 | MS.gene55740:CDS |
| AAAATTGGCGGAAACCTATC+TGG | 0.393328 | 4.3:-5410715 | MS.gene55740:CDS |
| TATCTGGTGTTCACTATGTT+CGG | 0.396099 | 4.3:-5410699 | MS.gene55740:CDS |
| AGTTTGGAAGCTAGTTCTAA+TGG | 0.403646 | 4.3:-5409032 | MS.gene55740:CDS |
| CGGAGTTTGCCTTTCTCCAC+CGG | 0.409361 | 4.3:+5411571 | None:intergenic |
| GTAGTTGGAGGTGGTTATAT+AGG | 0.417824 | 4.3:-5410267 | MS.gene55740:CDS |
| TTTCAGGTAATTATAGGCAT+TGG | 0.430590 | 4.3:-5408792 | MS.gene55740:intron |
| TAGGGGTTTCATACTTGTGT+TGG | 0.430901 | 4.3:-5411596 | MS.gene55740:CDS |
| GAAGAACTCTACCAAAAGAA+TGG | 0.434145 | 4.3:-5409463 | MS.gene55740:CDS |
| AAGAACTCTACCAAAAGAAT+GGG | 0.434278 | 4.3:-5409462 | MS.gene55740:CDS |
| TTGCTGCTGCAGCTGTTGCT+TGG | 0.440762 | 4.3:-5410236 | MS.gene55740:CDS |
| CGGCGGGAACAAGTAAGCTT+TGG | 0.443429 | 4.3:+5411756 | None:intergenic |
| CCTTTGAACAGTTGGAGAAA+CGG | 0.449926 | 4.3:-5407816 | MS.gene55740:intron |
| TCACCAACGGCAAATATTCC+AGG | 0.450460 | 4.3:+5408409 | None:intergenic |
| TTTCATACTTGTGTTGGATC+CGG | 0.452635 | 4.3:-5411590 | MS.gene55740:CDS |
| GTGGGTCCCTTTGAGAGGGT+GGG | 0.453084 | 4.3:-5408756 | MS.gene55740:CDS |
| TGAAGTTTGGCTTTATCAAT+CGG | 0.453211 | 4.3:+5407283 | None:intergenic |
| AAGGAAGCCCTAGAAAAGTA+TGG | 0.455277 | 4.3:-5408000 | MS.gene55740:CDS |
| GTTAAAGCAGGACGCTCATA+AGG | 0.458093 | 4.3:+5411778 | None:intergenic |
| GTCGAGCATGGCGTCGCCGA+TGG | 0.468901 | 4.3:-5411935 | MS.gene55740:CDS |
| TCTTTGTATTGTTACTAAAG+AGG | 0.470517 | 4.3:-5411909 | MS.gene55740:intron |
| ATATTCCAGGAATGCTTGTC+CGG | 0.470788 | 4.3:+5408422 | None:intergenic |
| TACTGATGTTGGTGGTATAC+AGG | 0.474240 | 4.3:-5408727 | MS.gene55740:intron |
| GTCTTCTGGCAAGTTCAGGC+AGG | 0.474739 | 4.3:+5407311 | None:intergenic |
| GGTGTTGCTGCTGTGAAACT+TGG | 0.478567 | 4.3:-5409002 | MS.gene55740:CDS |
| TGCTGTGGGTCCCTTTGAGA+GGG | 0.480462 | 4.3:-5408760 | MS.gene55740:CDS |
| ATCTTCCATACTTCTACTCA+AGG | 0.480887 | 4.3:-5408036 | MS.gene55740:CDS |
| ATCTGGTGTTCACTATGTTC+GGG | 0.484399 | 4.3:-5410698 | MS.gene55740:CDS |
| CCGGAGTGGTATAAAGAGAA+AGG | 0.486714 | 4.3:-5411551 | MS.gene55740:CDS |
| CATGTTCCACTCGAGAAATC+CGG | 0.487129 | 4.3:+5408221 | None:intergenic |
| AAGGGAGTTCTTGTTGAAAG+TGG | 0.487360 | 4.3:-5407563 | MS.gene55740:CDS |
| AGACGTGCTGGCTTCTTATC+CGG | 0.488388 | 4.3:+5411736 | None:intergenic |
| TGTGGGTCCCTTTGAGAGGG+TGG | 0.493473 | 4.3:-5408757 | MS.gene55740:CDS |
| AGTTAACAGTATACCTTCAA+AGG | 0.502143 | 4.3:+5408373 | None:intergenic |
| TGTAGGTATGTGATCGTTGG+CGG | 0.503279 | 4.3:-5411992 | MS.gene55740:intron |
| CTTAAACACACACTTTCTAT+CGG | 0.503444 | 4.3:-5412197 | MS.gene55740:CDS |
| CTGCTGTGGGTCCCTTTGAG+AGG | 0.505488 | 4.3:-5408761 | MS.gene55740:CDS |
| GTGGGTTTGAATACTGATGT+TGG | 0.506009 | 4.3:-5408738 | MS.gene55740:CDS |
| ATTTGTAGGTATGTGATCGT+TGG | 0.508034 | 4.3:-5411995 | MS.gene55740:intron |
| AAGATTCCCGAGCAATGTCT+AGG | 0.510266 | 4.3:+5407236 | None:intergenic |
| CATTGGAGCGAAGCCTGCTG+TGG | 0.512600 | 4.3:-5408775 | MS.gene55740:CDS |
| AAATTGGACAGATCTACAAC+CGG | 0.512737 | 4.3:-5408240 | MS.gene55740:intron |
| AGGAGGCCCTAGACATTGCT+CGG | 0.512883 | 4.3:-5407243 | MS.gene55740:CDS |
| AACAATACAAAGACGGCCAT+CGG | 0.513414 | 4.3:+5411919 | None:intergenic |
| GCTCGCACTTTCGTCGAGCA+TGG | 0.514884 | 4.3:-5411947 | MS.gene55740:CDS |
| AAGTAAGCTTTGGTTAAAGC+AGG | 0.518285 | 4.3:+5411766 | None:intergenic |
| TGGAGGTGGTTATATAGGAA+TGG | 0.519829 | 4.3:-5410262 | MS.gene55740:CDS |
| CTCTCAAAGGGACCCACAGC+AGG | 0.521993 | 4.3:+5408762 | None:intergenic |
| GAATGGGGTCAAAATATTGA+AGG | 0.522616 | 4.3:-5409446 | MS.gene55740:intron |
| GTGTTGGATCCGGTGGAGAA+AGG | 0.523177 | 4.3:-5411580 | MS.gene55740:CDS |
| AAATGCAACCTCAGTGGAGG+AGG | 0.524675 | 4.3:-5407260 | MS.gene55740:CDS |
| ATCTATTGTTGAAGCCGATA+CGG | 0.524804 | 4.3:-5408973 | MS.gene55740:intron |
| GTATAAAGAGAAAGGGATTG+AGG | 0.525751 | 4.3:-5411543 | MS.gene55740:intron |
| TTCAAACCCACCCTCTCAAA+GGG | 0.525859 | 4.3:+5408750 | None:intergenic |
| GAACATAGTGAACACCAGAT+AGG | 0.525885 | 4.3:+5410701 | None:intergenic |
| TCATATCTCCGTGCAAGAGA+AGG | 0.531450 | 4.3:+5409484 | None:intergenic |
| GTTAACAGTATACCTTCAAA+GGG | 0.531790 | 4.3:+5408374 | None:intergenic |
| AGGTTTCCAGATAAAATTGG+CGG | 0.534285 | 4.3:-5410727 | MS.gene55740:CDS |
| CGGAGTGGTATAAAGAGAAA+GGG | 0.546012 | 4.3:-5411550 | MS.gene55740:CDS |
| TGTTGCAGATGCTGATGCGC+TGG | 0.548090 | 4.3:-5410674 | MS.gene55740:CDS |
| TGTTCACTCCTTCTCTTGCA+CGG | 0.552103 | 4.3:-5409492 | MS.gene55740:CDS |
| ATTCCTGGAATATTTGCCGT+TGG | 0.553532 | 4.3:-5408412 | MS.gene55740:CDS |
| TGATGCGCTGGTTTCATCGT+TGG | 0.555619 | 4.3:-5410662 | MS.gene55740:intron |
| CCTTTCTCTTTATACCACTC+CGG | 0.556098 | 4.3:+5411551 | None:intergenic |
| ATTCTTACAGGAAGACGTGC+TGG | 0.556201 | 4.3:+5411724 | None:intergenic |
| GGATCGCTTATTATCGCTAC+GGG | 0.559989 | 4.3:-5410851 | MS.gene55740:CDS |
| GAAGCTAGTTCTAATGGTAA+CGG | 0.561867 | 4.3:-5409026 | MS.gene55740:CDS |
| GTTGGCGGAGGAAACGCGGC+GGG | 0.566996 | 4.3:-5411977 | MS.gene55740:CDS |
| AAGGTTGTAGTAGTTGGAGG+TGG | 0.567180 | 4.3:-5410276 | MS.gene55740:CDS |
| ATTCAAACCCACCCTCTCAA+AGG | 0.569035 | 4.3:+5408749 | None:intergenic |
| GCTGCTGTGAAACTTGGAGA+TGG | 0.572397 | 4.3:-5408996 | MS.gene55740:CDS |
| AGGGAGTTCTTGTTGAAAGT+GGG | 0.573102 | 4.3:-5407562 | MS.gene55740:CDS |
| CATACTTGTGTTGGATCCGG+TGG | 0.574095 | 4.3:-5411587 | MS.gene55740:CDS |
| GGAGGCCCTAGACATTGCTC+GGG | 0.578113 | 4.3:-5407242 | MS.gene55740:CDS |
| ATTGGAGCGAAGCCTGCTGT+GGG | 0.582408 | 4.3:-5408774 | MS.gene55740:CDS |
| TCTTCCATACTTCTACTCAA+GGG | 0.588304 | 4.3:-5408035 | MS.gene55740:CDS |
| GGTTTGAATACTGATGTTGG+TGG | 0.591995 | 4.3:-5408735 | MS.gene55740:CDS |
| TGTAGATCATGCTCGCAGAT+CGG | 0.594852 | 4.3:-5408200 | MS.gene55740:CDS |
| AGGTATGTGATCGTTGGCGG+AGG | 0.595324 | 4.3:-5411989 | MS.gene55740:CDS |
| AGATTCCCGAGCAATGTCTA+GGG | 0.597044 | 4.3:+5407237 | None:intergenic |
| CGGTGGAGAAAGGCAAACTC+CGG | 0.606827 | 4.3:-5411570 | MS.gene55740:CDS |
| CTACAACCGGATTTCTCGAG+TGG | 0.609013 | 4.3:-5408227 | MS.gene55740:CDS |
| GTGCTGGCTTCTTATCCGGC+GGG | 0.609992 | 4.3:+5411740 | None:intergenic |
| CTACGGGATGTACAGCCTCA+AGG | 0.614506 | 4.3:-5410835 | MS.gene55740:intron |
| TGGATCGCTTATTATCGCTA+CGG | 0.615296 | 4.3:-5410852 | MS.gene55740:CDS |
| CAAAGCTTACTTGTTCCCGC+CGG | 0.625888 | 4.3:-5411755 | MS.gene55740:CDS |
| ATACTGCACAGGTAAGCTGA+AGG | 0.625932 | 4.3:-5407582 | MS.gene55740:intron |
| AATGAGAGTGAAGTTGATGA+AGG | 0.626813 | 4.3:+5412134 | None:intergenic |
| GATCGTTGGCGGAGGAAACG+CGG | 0.630231 | 4.3:-5411981 | MS.gene55740:CDS |
| TACTGCACAGGTAAGCTGAA+GGG | 0.630603 | 4.3:-5407581 | MS.gene55740:intron |
| TCAAAATGCAACCTCAGTGG+AGG | 0.632916 | 4.3:-5407263 | MS.gene55740:CDS |
| CGTGCTGGCTTCTTATCCGG+CGG | 0.634693 | 4.3:+5411739 | None:intergenic |
| GTATACCTTCAAAGGGAAAG+CGG | 0.644512 | 4.3:+5408381 | None:intergenic |
| AGTTTGGCTTTATCAATCGG+AGG | 0.650779 | 4.3:+5407286 | None:intergenic |
| CTTTAGTAACAATACAAAGA+CGG | 0.652221 | 4.3:+5411912 | None:intergenic |
| ACTTCAAAATGCAACCTCAG+TGG | 0.656573 | 4.3:-5407266 | MS.gene55740:CDS |
| AGAGGCGTAACATCTATGGA+AGG | 0.665407 | 4.3:+5412106 | None:intergenic |
| GTCTAGGGCCTCCTCCACTG+AGG | 0.670188 | 4.3:+5407252 | None:intergenic |
| CTGAAATCTGTTCTAAACAG+CGG | 0.672278 | 4.3:+5407207 | None:intergenic |
| GCTAGTTCTAATGGTAACGG+AGG | 0.676312 | 4.3:-5409023 | MS.gene55740:CDS |
| GAAAGCGGCTACATCACCAA+CGG | 0.696123 | 4.3:+5408396 | None:intergenic |
| TGTTGAAAGTGGGAGCCCTG+AGG | 0.697472 | 4.3:-5407552 | MS.gene55740:intron |
| AGAACTCTACCAAAAGAATG+GGG | 0.712465 | 4.3:-5409461 | MS.gene55740:CDS |
| GAGAAAGGCAAACTCCGGAG+TGG | 0.714360 | 4.3:-5411565 | MS.gene55740:CDS |
| GAAGCCCTAGAAAAGTATGG+TGG | 0.729332 | 4.3:-5407997 | MS.gene55740:CDS |
| CGTTGGCGGAGGAAACGCGG+CGG | 0.738727 | 4.3:-5411978 | MS.gene55740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAGAAATGAA+AGG | + | chr4.3:5411558-5411577 | None:intergenic | 10.0% |
| !! | GTTTATTTATCATTTATTAT+AGG | - | chr4.3:5408118-5408137 | MS.gene55740:intron | 10.0% |
| !! | AAAAAAAAACAACTAATTTC+AGG | + | chr4.3:5411337-5411356 | None:intergenic | 15.0% |
| !! | AGAAAAAAATAAAGTTGTAT+TGG | + | chr4.3:5410158-5410177 | None:intergenic | 15.0% |
| !! | GTAAATATCAATAAAATCAT+TGG | + | chr4.3:5408842-5408861 | None:intergenic | 15.0% |
| !! | TAAAATGTGATTTATTTATC+AGG | - | chr4.3:5409355-5409374 | MS.gene55740:intron | 15.0% |
| !! | TAACAAAGATAATATTTGAA+TGG | + | chr4.3:5408914-5408933 | None:intergenic | 15.0% |
| !! | TGTTAATGTTATTAATAACT+TGG | - | chr4.3:5411978-5411997 | MS.gene55740:CDS | 15.0% |
| !!! | AAATAAATCACATTTTAAAG+AGG | + | chr4.3:5409352-5409371 | None:intergenic | 15.0% |
| !!! | AAATATGATCTATTTTTTAC+AGG | + | chr4.3:5409906-5409925 | None:intergenic | 15.0% |
| !!! | AACAATCAATTTTAATGTAT+AGG | + | chr4.3:5409843-5409862 | None:intergenic | 15.0% |
| !!! | AATAAATCACATTTTAAAGA+GGG | + | chr4.3:5409351-5409370 | None:intergenic | 15.0% |
| !!! | ACAAATTGAAAAACTTTTTT+AGG | + | chr4.3:5409515-5409534 | None:intergenic | 15.0% |
| !!! | TATGTAATGCTTTTTATTTA+GGG | - | chr4.3:5407829-5407848 | MS.gene55740:intron | 15.0% |
| !!! | TTATGTAATGCTTTTTATTT+AGG | - | chr4.3:5407828-5407847 | MS.gene55740:intron | 15.0% |
| !!! | TTTTATAATGCTCAAATTAT+TGG | - | chr4.3:5410553-5410572 | MS.gene55740:intron | 15.0% |
| !! | AAAATTTCAACTCTTTATTG+AGG | + | chr4.3:5408239-5408258 | None:intergenic | 20.0% |
| !! | AAATTAACACAGAACTAATT+CGG | + | chr4.3:5412064-5412083 | None:intergenic | 20.0% |
| !! | ATAATGCTCAAATTAAATAG+AGG | + | chr4.3:5410367-5410386 | None:intergenic | 20.0% |
| !! | ATTGATATTTACGTTTATGA+TGG | - | chr4.3:5408850-5408869 | MS.gene55740:intron | 20.0% |
| !! | CTTTACAATCATTTGATATA+TGG | - | chr4.3:5408888-5408907 | MS.gene55740:intron | 20.0% |
| !! | TATCTGTGTTTCTTAAAAAT+TGG | - | chr4.3:5411187-5411206 | MS.gene55740:intron | 20.0% |
| !! | TTGATATTTACGTTTATGAT+GGG | - | chr4.3:5408851-5408870 | MS.gene55740:intron | 20.0% |
| !! | TTTATAGCCAAAAATTAAGT+TGG | - | chr4.3:5409078-5409097 | MS.gene55740:intron | 20.0% |
| !!! | AGATGTTGATTATCAATTTT+TGG | - | chr4.3:5410873-5410892 | MS.gene55740:CDS | 20.0% |
| !!! | ATGTAATGCTTTTTATTTAG+GGG | - | chr4.3:5407830-5407849 | MS.gene55740:intron | 20.0% |
| !!! | ATTTTTAAGAAAACAACAGA+AGG | + | chr4.3:5408658-5408677 | None:intergenic | 20.0% |
| !!! | TCTAATTTTCAGGTAATTAT+AGG | - | chr4.3:5410645-5410664 | MS.gene55740:intron | 20.0% |
| !!! | TCTGTTGTTTTCTTAAAAAT+TGG | - | chr4.3:5408658-5408677 | MS.gene55740:intron | 20.0% |
| !!! | TTAGTTCATTTTCTAAAAAG+TGG | + | chr4.3:5409390-5409409 | None:intergenic | 20.0% |
| !!! | TTTATGTCCAACTTAATTTT+TGG | + | chr4.3:5409088-5409107 | None:intergenic | 20.0% |
| !!! | TTTCCATTTTCTTTAATATG+TGG | - | chr4.3:5410503-5410522 | MS.gene55740:intron | 20.0% |
| !!! | TTTCCTACACTATTTTTATT+GGG | - | chr4.3:5409254-5409273 | MS.gene55740:intron | 20.0% |
| !!! | TTTTCCTACACTATTTTTAT+TGG | - | chr4.3:5409253-5409272 | MS.gene55740:intron | 20.0% |
| !!! | TTTTTTAATCGCTTATTTGT+AGG | - | chr4.3:5407434-5407453 | MS.gene55740:intron | 20.0% |
| !!! | TTTTTTTGAAGACATATGAA+AGG | + | chr4.3:5411526-5411545 | None:intergenic | 20.0% |
| ! | AAAGGAAAATTAATAGTGTG+AGG | + | chr4.3:5411612-5411631 | None:intergenic | 25.0% |
| ! | AAATTAAATAGAGGAAAGGA+AGG | + | chr4.3:5410358-5410377 | None:intergenic | 25.0% |
| ! | AGTACTTACTAGTTACAATA+TGG | + | chr4.3:5410058-5410077 | None:intergenic | 25.0% |
| ! | ATGCTGAATTGATGAAAATA+GGG | - | chr4.3:5407635-5407654 | MS.gene55740:intron | 25.0% |
| ! | ATGTTTGCAGATAAAATTAG+AGG | - | chr4.3:5410925-5410944 | MS.gene55740:CDS | 25.0% |
| ! | ATTAGGTTTCCAGATAAAAT+TGG | - | chr4.3:5408713-5408732 | MS.gene55740:intron | 25.0% |
| ! | ATTGAGGAAATATGTAACTA+AGG | + | chr4.3:5408223-5408242 | None:intergenic | 25.0% |
| ! | ATTTGAGCATTATATTCATC+AGG | - | chr4.3:5410374-5410393 | MS.gene55740:intron | 25.0% |
| ! | CATAAATTAGAGGAAAAATG+AGG | + | chr4.3:5409724-5409743 | None:intergenic | 25.0% |
| ! | CTCAAATAAGTCAATTCTAA+CGG | + | chr4.3:5407940-5407959 | None:intergenic | 25.0% |
| ! | CTTTAGTAACAATACAAAGA+CGG | + | chr4.3:5407534-5407553 | None:intergenic | 25.0% |
| ! | GAAAAAGAAATATACCGTAT+CGG | + | chr4.3:5410487-5410506 | None:intergenic | 25.0% |
| ! | GGTGAAATAGAAAAATAGAA+AGG | + | chr4.3:5411582-5411601 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAGATGAAT+TGG | + | chr4.3:5408694-5408713 | None:intergenic | 25.0% |
| ! | TAGGACATTAACAAGAAAAA+TGG | + | chr4.3:5409490-5409509 | None:intergenic | 25.0% |
| ! | TAGTATATTGTAACTGAGTA+AGG | - | chr4.3:5408404-5408423 | MS.gene55740:CDS | 25.0% |
| ! | TATGCTGAATTGATGAAAAT+AGG | - | chr4.3:5407634-5407653 | MS.gene55740:intron | 25.0% |
| ! | TCAATATTGCTGAATTTCAT+TGG | - | chr4.3:5411366-5411385 | MS.gene55740:intron | 25.0% |
| ! | TCATATTCTCTGATATTTAC+TGG | - | chr4.3:5407803-5407822 | MS.gene55740:CDS | 25.0% |
| ! | TCTTTGTATTGTTACTAAAG+AGG | - | chr4.3:5407534-5407553 | MS.gene55740:intron | 25.0% |
| ! | TGCTCAAAATACAAATTTCT+TGG | - | chr4.3:5409456-5409475 | MS.gene55740:CDS | 25.0% |
| ! | TGTGTTAATTGTATGTCAAT+GGG | - | chr4.3:5408277-5408296 | MS.gene55740:intron | 25.0% |
| ! | TGTTTGCAGATAAAATTAGA+GGG | - | chr4.3:5410926-5410945 | MS.gene55740:CDS | 25.0% |
| ! | TTAAGATGTTTATCTAAGCA+AGG | - | chr4.3:5408197-5408216 | MS.gene55740:CDS | 25.0% |
| ! | TTTGAGCATTATATTCATCA+GGG | - | chr4.3:5410375-5410394 | MS.gene55740:intron | 25.0% |
| ! | TTTGCATAATGTTCAAGATT+AGG | - | chr4.3:5410763-5410782 | MS.gene55740:intron | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | chr4.3:5410192-5410211 | None:intergenic | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | chr4.3:5410191-5410210 | None:intergenic | 25.0% |
| !! | ACTTTCTCTTTCTAATTTTC+AGG | - | chr4.3:5410635-5410654 | MS.gene55740:intron | 25.0% |
| !! | CTAATTTTATCTGCAAACAT+GGG | + | chr4.3:5410925-5410944 | None:intergenic | 25.0% |
| !! | CTTTTCAATGCTTTTCATAT+GGG | - | chr4.3:5408943-5408962 | MS.gene55740:intron | 25.0% |
| !! | TAATTTTATCTGCAAACATG+GGG | + | chr4.3:5410924-5410943 | None:intergenic | 25.0% |
| !! | TCTAATTTTATCTGCAAACA+TGG | + | chr4.3:5410926-5410945 | None:intergenic | 25.0% |
| !! | TCTTTTCAATGCTTTTCATA+TGG | - | chr4.3:5408942-5408961 | MS.gene55740:intron | 25.0% |
| !! | TGTTTGAAACCATAAATTAG+AGG | + | chr4.3:5409734-5409753 | None:intergenic | 25.0% |
| !! | TTAATTTTCCTTTGAACAGT+TGG | - | chr4.3:5411619-5411638 | MS.gene55740:intron | 25.0% |
| !!! | AATTGATTGTTGTTTTCTGA+AGG | - | chr4.3:5409852-5409871 | MS.gene55740:intron | 25.0% |
| !!! | ATCCAAAAAGTAGCTATTTT+AGG | + | chr4.3:5411673-5411692 | None:intergenic | 25.0% |
| !!! | ATCCTAAAATAGCTACTTTT+TGG | - | chr4.3:5411668-5411687 | MS.gene55740:intron | 25.0% |
| !!! | CTCATTTTTCCTCTAATTTA+TGG | - | chr4.3:5409722-5409741 | MS.gene55740:intron | 25.0% |
| !!! | CTGTTTGTTTTTTTATTTCC+AGG | - | chr4.3:5409133-5409152 | MS.gene55740:intron | 25.0% |
| !!! | TCATCTTCTATCTTGTTATT+AGG | - | chr4.3:5408696-5408715 | MS.gene55740:intron | 25.0% |
| !!! | TGAAAAACTTTTTTAGGCAT+AGG | + | chr4.3:5409509-5409528 | None:intergenic | 25.0% |
| !!! | TTCCTACACTATTTTTATTG+GGG | - | chr4.3:5409255-5409274 | MS.gene55740:intron | 25.0% |
| AAAAGAAACAATGTGGTTCT+TGG | + | chr4.3:5409061-5409080 | None:intergenic | 30.0% | |
| AAAAGAAAGATTGAAGAACG+GGG | + | chr4.3:5410035-5410054 | None:intergenic | 30.0% | |
| AAACATTGTTAAGTAAGTGC+CGG | - | chr4.3:5409749-5409768 | MS.gene55740:intron | 30.0% | |
| AACAATAAGTCATGTTAGAG+AGG | + | chr4.3:5408819-5408838 | None:intergenic | 30.0% | |
| AAGAACTCTACCAAAAGAAT+GGG | - | chr4.3:5409981-5410000 | MS.gene55740:intron | 30.0% | |
| AATATACTAAGACTCTCCTA+CGG | + | chr4.3:5408393-5408412 | None:intergenic | 30.0% | |
| AATTAATAGTGTGAGGAACA+AGG | + | chr4.3:5411605-5411624 | None:intergenic | 30.0% | |
| AGTTAACAGTATACCTTCAA+AGG | + | chr4.3:5411073-5411092 | None:intergenic | 30.0% | |
| ATATTGTAACTGAGTAAGGA+AGG | - | chr4.3:5408408-5408427 | MS.gene55740:CDS | 30.0% | |
| ATTAATAGTGTGAGGAACAA+GGG | + | chr4.3:5411604-5411623 | None:intergenic | 30.0% | |
| ATTCACCATAACATTCTTAC+AGG | + | chr4.3:5407734-5407753 | None:intergenic | 30.0% | |
| CAAAATATTTGCTTATCCAC+TGG | + | chr4.3:5410747-5410766 | None:intergenic | 30.0% | |
| CAGCATTACAATAACTTCAA+TGG | + | chr4.3:5408463-5408482 | None:intergenic | 30.0% | |
| CAGCCACATATTAAAGAAAA+TGG | + | chr4.3:5410509-5410528 | None:intergenic | 30.0% | |
| CATTCTTAGCTATTACGAAA+CGG | - | chr4.3:5408357-5408376 | MS.gene55740:intron | 30.0% | |
| CCAACATATGTATGAGATTA+TGG | + | chr4.3:5409807-5409826 | None:intergenic | 30.0% | |
| CCATAATCTCATACATATGT+TGG | - | chr4.3:5409804-5409823 | MS.gene55740:intron | 30.0% | |
| CTGTGTTAATTGTATGTCAA+TGG | - | chr4.3:5408276-5408295 | MS.gene55740:intron | 30.0% | |
| CTTAAACACACACTTTCTAT+CGG | - | chr4.3:5407246-5407265 | MS.gene55740:CDS | 30.0% | |
| CTTATTTCCATAAGTTCTCT+AGG | - | chr4.3:5408051-5408070 | MS.gene55740:intron | 30.0% | |
| GAAAAGAAAGATTGAAGAAC+GGG | + | chr4.3:5410036-5410055 | None:intergenic | 30.0% | |
| GAAAATTGTGAGAGAAAAGT+TGG | + | chr4.3:5410206-5410225 | None:intergenic | 30.0% | |
| GAAATTCAGCAATATTGACA+GGG | + | chr4.3:5411364-5411383 | None:intergenic | 30.0% | |
| GACATTAACAAGAAAAATGG+AGG | + | chr4.3:5409487-5409506 | None:intergenic | 30.0% | |
| GAGAATATGAACATAACTAC+TGG | + | chr4.3:5407793-5407812 | None:intergenic | 30.0% | |
| GAGTGAACAATCTTTGTAAA+AGG | + | chr4.3:5409940-5409959 | None:intergenic | 30.0% | |
| GCACACTATTAGTAATAATC+AGG | + | chr4.3:5411839-5411858 | None:intergenic | 30.0% | |
| GCTCAAATTAAATAGAGGAA+AGG | + | chr4.3:5410362-5410381 | None:intergenic | 30.0% | |
| GGAAAAGAAAGATTGAAGAA+CGG | + | chr4.3:5410037-5410056 | None:intergenic | 30.0% | |
| GTAAATAGACAAATACCTTG+AGG | + | chr4.3:5408626-5408645 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr4.3:5410182-5410201 | None:intergenic | 30.0% | |
| GTTAACAGTATACCTTCAAA+GGG | + | chr4.3:5411072-5411091 | None:intergenic | 30.0% | |
| GTTTATGACATAAGTTCTCT+AGG | - | chr4.3:5408013-5408032 | MS.gene55740:CDS | 30.0% | |
| TACTTCACTATTCAGCATTT+AGG | + | chr4.3:5409580-5409599 | None:intergenic | 30.0% | |
| TGAAATTCAGCAATATTGAC+AGG | + | chr4.3:5411365-5411384 | None:intergenic | 30.0% | |
| TGCTGAATTGATGAAAATAG+GGG | - | chr4.3:5407636-5407655 | MS.gene55740:intron | 30.0% | |
| TGGCTATAAAAGAAACAATG+TGG | + | chr4.3:5409068-5409087 | None:intergenic | 30.0% | |
| TTATATGTGACATTTCTGCT+CGG | - | chr4.3:5408973-5408992 | MS.gene55740:intron | 30.0% | |
| TTCCCCAATAAAAATAGTGT+AGG | + | chr4.3:5409260-5409279 | None:intergenic | 30.0% | |
| TTTATCTGCAGCAATTTAGA+GGG | - | chr4.3:5410801-5410820 | MS.gene55740:intron | 30.0% | |
| ! | AATTTTATCTGCAAACATGG+GGG | + | chr4.3:5410923-5410942 | None:intergenic | 30.0% |
| ! | CAAAAGCATGATAATAGTCA+GGG | + | chr4.3:5409693-5409712 | None:intergenic | 30.0% |
| ! | CATTTTCTTTAATATGTGGC+TGG | - | chr4.3:5410507-5410526 | MS.gene55740:intron | 30.0% |
| ! | TCAGTATCAATGTTTTCTAC+TGG | + | chr4.3:5408529-5408548 | None:intergenic | 30.0% |
| ! | TTTCAGGTAATTATAGGCAT+TGG | - | chr4.3:5410651-5410670 | MS.gene55740:intron | 30.0% |
| !! | ACTAGCTTCCAAACTTTTAA+TGG | + | chr4.3:5410406-5410425 | None:intergenic | 30.0% |
| !! | CGAGTAAGAATTTTTGTTTG+AGG | + | chr4.3:5407276-5407295 | None:intergenic | 30.0% |
| !! | GAATTTCATTGGTGATTTTC+AGG | - | chr4.3:5411377-5411396 | MS.gene55740:intron | 30.0% |
| !! | TGAAGTTTGGCTTTATCAAT+CGG | + | chr4.3:5412163-5412182 | None:intergenic | 30.0% |
| !!! | ATATTTTGACCCCATTCTTT+TGG | + | chr4.3:5409994-5410013 | None:intergenic | 30.0% |
| !!! | CTGTTTTTTGAATGTGTATC+AGG | - | chr4.3:5412099-5412118 | MS.gene55740:CDS | 30.0% |
| AAAAAGGTTGTAGTAGTTGG+AGG | - | chr4.3:5409164-5409183 | MS.gene55740:intron | 35.0% | |
| AAAACAACAGAAGGTGAACT+GGG | + | chr4.3:5408649-5408668 | None:intergenic | 35.0% | |
| AAAACCCTTGAGTAGAAGTA+TGG | + | chr4.3:5411415-5411434 | None:intergenic | 35.0% | |
| AAACGACACTCATTGTGAAA+CGG | - | chr4.3:5410274-5410293 | MS.gene55740:CDS | 35.0% | |
| AACATTGTTAAGTAAGTGCC+GGG | - | chr4.3:5409750-5409769 | MS.gene55740:intron | 35.0% | |
| AAGACGAAAACAATCCTTAC+CGG | + | chr4.3:5411701-5411720 | None:intergenic | 35.0% | |
| AAGCTATCCTAGAGAACTTA+TGG | + | chr4.3:5408061-5408080 | None:intergenic | 35.0% | |
| AAGTGACACTCATTGTGAAA+CGG | + | chr4.3:5410088-5410107 | None:intergenic | 35.0% | |
| AATCCACGCATCAATACTAA+AGG | + | chr4.3:5411725-5411744 | None:intergenic | 35.0% | |
| ACATTCAAAAAACAGCTCTC+AGG | + | chr4.3:5412094-5412113 | None:intergenic | 35.0% | |
| ACTACACTAGAAATTACCTC+AGG | + | chr4.3:5411910-5411929 | None:intergenic | 35.0% | |
| AGAACTCTACCAAAAGAATG+GGG | - | chr4.3:5409982-5410001 | MS.gene55740:intron | 35.0% | |
| AGAGGAAAAATGAGGCTAAA+AGG | + | chr4.3:5409716-5409735 | None:intergenic | 35.0% | |
| AGGTTTCCAGATAAAATTGG+CGG | - | chr4.3:5408716-5408735 | MS.gene55740:intron | 35.0% | |
| ATCTATTGTTGAAGCCGATA+CGG | - | chr4.3:5410470-5410489 | MS.gene55740:intron | 35.0% | |
| ATCTTCCATACTTCTACTCA+AGG | - | chr4.3:5411407-5411426 | MS.gene55740:intron | 35.0% | |
| ATTAGAGAAGAAGAGGTCAA+TGG | - | chr4.3:5410602-5410621 | MS.gene55740:intron | 35.0% | |
| ATTGATCATGTTCTTGCTGA+AGG | + | chr4.3:5407577-5407596 | None:intergenic | 35.0% | |
| ATTTGTAGGTATGTGATCGT+TGG | - | chr4.3:5407448-5407467 | MS.gene55740:intron | 35.0% | |
| CAAACTTTGACAACAAGTTC+TGG | - | chr4.3:5408553-5408572 | MS.gene55740:intron | 35.0% | |
| CCATTCCATTTCAAACAATC+TGG | + | chr4.3:5408321-5408340 | None:intergenic | 35.0% | |
| CTACACTAGAAATTACCTCA+GGG | + | chr4.3:5411909-5411928 | None:intergenic | 35.0% | |
| CTTTATCTGCAGCAATTTAG+AGG | - | chr4.3:5410800-5410819 | MS.gene55740:intron | 35.0% | |
| CTTTGTAAAAGGTGATCTTC+AGG | + | chr4.3:5409929-5409948 | None:intergenic | 35.0% | |
| GAAGAACTCTACCAAAAGAA+TGG | - | chr4.3:5409980-5409999 | MS.gene55740:intron | 35.0% | |
| GAAGGACTAAGAGAATAGAA+TGG | + | chr4.3:5410340-5410359 | None:intergenic | 35.0% | |
| GAATGGGGTCAAAATATTGA+AGG | - | chr4.3:5409997-5410016 | MS.gene55740:intron | 35.0% | |
| GCTGAATTGATGAAAATAGG+GGG | - | chr4.3:5407637-5407656 | MS.gene55740:intron | 35.0% | |
| GTATAAAGAGAAAGGGATTG+AGG | - | chr4.3:5407900-5407919 | MS.gene55740:intron | 35.0% | |
| GTATTCTTATCCTGCATTTC+AGG | - | chr4.3:5410985-5411004 | MS.gene55740:intron | 35.0% | |
| GTCTTCCTGTAAGAATGTTA+TGG | - | chr4.3:5407726-5407745 | MS.gene55740:intron | 35.0% | |
| TATCTGGTGTTCACTATGTT+CGG | - | chr4.3:5408744-5408763 | MS.gene55740:CDS | 35.0% | |
| TCTGGAAAGCTTCTTAAGTA+TGG | - | chr4.3:5408571-5408590 | MS.gene55740:intron | 35.0% | |
| TCTTCCATACTTCTACTCAA+GGG | - | chr4.3:5411408-5411427 | MS.gene55740:intron | 35.0% | |
| TGGATTATCTCTGAGCTTTA+GGG | - | chr4.3:5411739-5411758 | MS.gene55740:CDS | 35.0% | |
| TTAATAGTGTGAGGAACAAG+GGG | + | chr4.3:5411603-5411622 | None:intergenic | 35.0% | |
| TTTCATACTTGTGTTGGATC+CGG | - | chr4.3:5407853-5407872 | MS.gene55740:intron | 35.0% | |
| TTTCCAGGAAAAAGCGAAAA+AGG | - | chr4.3:5409148-5409167 | MS.gene55740:intron | 35.0% | |
| ! | AAGTAAGCTTTGGTTAAAGC+AGG | + | chr4.3:5407680-5407699 | None:intergenic | 35.0% |
| ! | AGCTTCCAAACTTTTAATGG+AGG | + | chr4.3:5410403-5410422 | None:intergenic | 35.0% |
| ! | ATTGTCAAAGTATCCATGCA+TGG | + | chr4.3:5409784-5409803 | None:intergenic | 35.0% |
| ! | ATTTTATCTGCAAACATGGG+GGG | + | chr4.3:5410922-5410941 | None:intergenic | 35.0% |
| ! | CAATTTGTTTCACTGCGTAA+AGG | - | chr4.3:5409527-5409546 | MS.gene55740:CDS | 35.0% |
| ! | CCAGATTGTTTGAAATGGAA+TGG | - | chr4.3:5408318-5408337 | MS.gene55740:intron | 35.0% |
| ! | GCAAAAGCATGATAATAGTC+AGG | + | chr4.3:5409694-5409713 | None:intergenic | 35.0% |
| ! | TCAAGGGTTTTTGAATACGA+AGG | - | chr4.3:5411424-5411443 | MS.gene55740:intron | 35.0% |
| ! | TTGTCAAAGTATCCATGCAT+GGG | + | chr4.3:5409783-5409802 | None:intergenic | 35.0% |
| ! | TTTTTGGATTGAATCCGGTA+AGG | - | chr4.3:5411684-5411703 | MS.gene55740:intron | 35.0% |
| !! | AACAACTAATTTCAGGTTGC+AGG | + | chr4.3:5411330-5411349 | None:intergenic | 35.0% |
| !! | AATGAGAGTGAAGTTGATGA+AGG | + | chr4.3:5407312-5407331 | None:intergenic | 35.0% |
| !! | AGGGTTTGCTTTTGAAAGAA+TGG | + | chr4.3:5409332-5409351 | None:intergenic | 35.0% |
| !! | AGTTTGGAAGCTAGTTCTAA+TGG | - | chr4.3:5410411-5410430 | MS.gene55740:intron | 35.0% |
| !! | ATTCCTGTTTCTGGAAAACT+AGG | - | chr4.3:5411131-5411150 | MS.gene55740:intron | 35.0% |
| !! | GAAGCTAGTTCTAATGGTAA+CGG | - | chr4.3:5410417-5410436 | MS.gene55740:intron | 35.0% |
| !! | TTCACAATGAGTGTCGTTTA+AGG | + | chr4.3:5410273-5410292 | None:intergenic | 35.0% |
| !! | TTTCCTTTAGTATTGATGCG+TGG | - | chr4.3:5411719-5411738 | MS.gene55740:intron | 35.0% |
| !!! | AAAGTATGGTGGCAGTTTTT+TGG | - | chr4.3:5411457-5411476 | MS.gene55740:intron | 35.0% |
| !!! | GCTACTTTTTGGATTGAATC+CGG | - | chr4.3:5411679-5411698 | MS.gene55740:intron | 35.0% |
| !!! | TGAGGTTGCATTTTGAAGTT+TGG | + | chr4.3:5412176-5412195 | None:intergenic | 35.0% |
| AAAATTGGCGGAAACCTATC+TGG | - | chr4.3:5408728-5408747 | MS.gene55740:CDS | 40.0% | |
| AAACAACAGAAGGTGAACTG+GGG | + | chr4.3:5408648-5408667 | None:intergenic | 40.0% | |
| AACAATACAAAGACGGCCAT+CGG | + | chr4.3:5407527-5407546 | None:intergenic | 40.0% | |
| AAGGAAGCCCTAGAAAAGTA+TGG | - | chr4.3:5411443-5411462 | MS.gene55740:intron | 40.0% | |
| AAGGGAGTTCTTGTTGAAAG+TGG | - | chr4.3:5411880-5411899 | MS.gene55740:intron | 40.0% | |
| ACTTCAAAATGCAACCTCAG+TGG | - | chr4.3:5412177-5412196 | MS.gene55740:CDS | 40.0% | |
| AGGGAGTTCTTGTTGAAAGT+GGG | - | chr4.3:5411881-5411900 | MS.gene55740:intron | 40.0% | |
| ATAGTGTGCTAATACTGCAC+AGG | - | chr4.3:5411850-5411869 | MS.gene55740:intron | 40.0% | |
| ATATTCCAGGAATGCTTGTC+CGG | + | chr4.3:5411024-5411043 | None:intergenic | 40.0% | |
| ATCTGGTGTTCACTATGTTC+GGG | - | chr4.3:5408745-5408764 | MS.gene55740:CDS | 40.0% | |
| ATGATAATAGTCAGGGTCCT+TGG | + | chr4.3:5409686-5409705 | None:intergenic | 40.0% | |
| ATTAAGACACAGCTCTACCA+AGG | - | chr4.3:5409666-5409685 | MS.gene55740:intron | 40.0% | |
| ATTCCTGGAATATTTGCCGT+TGG | - | chr4.3:5411031-5411050 | MS.gene55740:intron | 40.0% | |
| CCTTTCTCTTTATACCACTC+CGG | + | chr4.3:5407895-5407914 | None:intergenic | 40.0% | |
| CCTTTGAACAGTTGGAGAAA+CGG | - | chr4.3:5411627-5411646 | MS.gene55740:intron | 40.0% | |
| CGGAGTGGTATAAAGAGAAA+GGG | - | chr4.3:5407893-5407912 | MS.gene55740:intron | 40.0% | |
| CGTCTTCATTAGAGAAGAAG+AGG | - | chr4.3:5410595-5410614 | MS.gene55740:intron | 40.0% | |
| GAAAACAACAGAAGGTGAAC+TGG | + | chr4.3:5408650-5408669 | None:intergenic | 40.0% | |
| GAACATAGTGAACACCAGAT+AGG | + | chr4.3:5408745-5408764 | None:intergenic | 40.0% | |
| GCGAAAAAGGTTGTAGTAGT+TGG | - | chr4.3:5409161-5409180 | MS.gene55740:intron | 40.0% | |
| GCGACTAGAAAGACTTAATG+TGG | + | chr4.3:5409620-5409639 | None:intergenic | 40.0% | |
| GGACACCAGATTGTTTGAAA+TGG | - | chr4.3:5408313-5408332 | MS.gene55740:intron | 40.0% | |
| GGTTTGAATACTGATGTTGG+TGG | - | chr4.3:5410708-5410727 | MS.gene55740:CDS | 40.0% | |
| GTAGTTGGAGGTGGTTATAT+AGG | - | chr4.3:5409176-5409195 | MS.gene55740:intron | 40.0% | |
| GTATACCTTCAAAGGGAAAG+CGG | + | chr4.3:5411065-5411084 | None:intergenic | 40.0% | |
| GTGGGTTTGAATACTGATGT+TGG | - | chr4.3:5410705-5410724 | MS.gene55740:CDS | 40.0% | |
| GTTGGAGAAACGGTTGAAAT+TGG | - | chr4.3:5411637-5411656 | MS.gene55740:intron | 40.0% | |
| TAGGGGTTTCATACTTGTGT+TGG | - | chr4.3:5407847-5407866 | MS.gene55740:intron | 40.0% | |
| TCAATGGGACTGTGATACAA+TGG | - | chr4.3:5408292-5408311 | MS.gene55740:intron | 40.0% | |
| TGATCAGACATTCCTGTTTC+TGG | - | chr4.3:5411122-5411141 | MS.gene55740:intron | 40.0% | |
| TGGAGGTGGTTATATAGGAA+TGG | - | chr4.3:5409181-5409200 | MS.gene55740:intron | 40.0% | |
| TGGATCGCTTATTATCGCTA+CGG | - | chr4.3:5408591-5408610 | MS.gene55740:intron | 40.0% | |
| TGTAATCAAAACCAACAGCG+TGG | + | chr4.3:5408490-5408509 | None:intergenic | 40.0% | |
| ! | AAACGGAGACATTTTACCGT+AGG | - | chr4.3:5408374-5408393 | MS.gene55740:intron | 40.0% |
| ! | AACTGCCACCATACTTTTCT+AGG | + | chr4.3:5411454-5411473 | None:intergenic | 40.0% |
| ! | ACTGCCACCATACTTTTCTA+GGG | + | chr4.3:5411453-5411472 | None:intergenic | 40.0% |
| ! | AGGTTTCCGCCAATTTTATC+TGG | + | chr4.3:5408725-5408744 | None:intergenic | 40.0% |
| ! | ATACCTTGAACTCGCTGTTT+TGG | + | chr4.3:5410955-5410974 | None:intergenic | 40.0% |
| ! | GGATTATCTCTGAGCTTTAG+GGG | - | chr4.3:5411740-5411759 | MS.gene55740:CDS | 40.0% |
| ! | GGGTTCTAACAAAGGAAACA+CGG | + | chr4.3:5410902-5410921 | None:intergenic | 40.0% |
| ! | GTGGATTATCTCTGAGCTTT+AGG | - | chr4.3:5411738-5411757 | MS.gene55740:CDS | 40.0% |
| !! | AGTTTGGCTTTATCAATCGG+AGG | + | chr4.3:5412160-5412179 | None:intergenic | 40.0% |
| !! | TACTGATGTTGGTGGTATAC+AGG | - | chr4.3:5410716-5410735 | MS.gene55740:CDS | 40.0% |
| !! | TATCCTGCATTTCAGGTTGA+TGG | - | chr4.3:5410992-5411011 | MS.gene55740:intron | 40.0% |
| !!! | CAACCTTTTTCGCTTTTTCC+TGG | + | chr4.3:5409154-5409173 | None:intergenic | 40.0% |
| !!! | TGGCAGTTTTTTGGAGACAA+TGG | - | chr4.3:5411466-5411485 | MS.gene55740:intron | 40.0% |
| AAGATTCCCGAGCAATGTCT+AGG | + | chr4.3:5412210-5412229 | None:intergenic | 45.0% | |
| AAGGTTGTAGTAGTTGGAGG+TGG | - | chr4.3:5409167-5409186 | MS.gene55740:intron | 45.0% | |
| AATGCTGAATTCCACGCTGT+TGG | - | chr4.3:5408476-5408495 | MS.gene55740:intron | 45.0% | |
| ACGGAGGGAGTAAGTAGTAA+TGG | - | chr4.3:5410293-5410312 | MS.gene55740:intron | 45.0% | |
| AGACCATCAACCTGAAATGC+AGG | + | chr4.3:5410998-5411017 | None:intergenic | 45.0% | |
| AGATTCCCGAGCAATGTCTA+GGG | + | chr4.3:5412209-5412228 | None:intergenic | 45.0% | |
| ATACTGCACAGGTAAGCTGA+AGG | - | chr4.3:5411861-5411880 | MS.gene55740:intron | 45.0% | |
| ATTCAAACCCACCCTCTCAA+AGG | + | chr4.3:5410697-5410716 | None:intergenic | 45.0% | |
| ATTCTTACAGGAAGACGTGC+TGG | + | chr4.3:5407722-5407741 | None:intergenic | 45.0% | |
| CATGTTCCACTCGAGAAATC+CGG | + | chr4.3:5411225-5411244 | None:intergenic | 45.0% | |
| CCGGAGTGGTATAAAGAGAA+AGG | - | chr4.3:5407892-5407911 | MS.gene55740:intron | 45.0% | |
| CCGTTTCTCCAACTGTTCAA+AGG | + | chr4.3:5411630-5411649 | None:intergenic | 45.0% | |
| CGGAGGGAGTAAGTAGTAAT+GGG | - | chr4.3:5410294-5410313 | MS.gene55740:intron | 45.0% | |
| GAAAGATTGAAGAACGGGGA+TGG | + | chr4.3:5410031-5410050 | None:intergenic | 45.0% | |
| GACACTCATTGTGAAACGGA+GGG | - | chr4.3:5410278-5410297 | MS.gene55740:CDS | 45.0% | |
| GACACTCATTGTGAAACGGA+GGG | + | chr4.3:5410297-5410278 | None:intergenic | 45.0% | |
| GAGAAGAAGAGGTCAATGGA+TGG | - | chr4.3:5410606-5410625 | MS.gene55740:intron | 45.0% | |
| GGATCGCTTATTATCGCTAC+GGG | - | chr4.3:5408592-5408611 | MS.gene55740:intron | 45.0% | |
| GGGTGCCTCCATTAAAAGTT+TGG | - | chr4.3:5410395-5410414 | MS.gene55740:intron | 45.0% | |
| GTTAAAGCAGGACGCTCATA+AGG | + | chr4.3:5407668-5407687 | None:intergenic | 45.0% | |
| TACTGCACAGGTAAGCTGAA+GGG | - | chr4.3:5411862-5411881 | MS.gene55740:intron | 45.0% | |
| TAGCCAAAACAGCGAGTTCA+AGG | - | chr4.3:5410949-5410968 | MS.gene55740:intron | 45.0% | |
| TCAAAATGCAACCTCAGTGG+AGG | - | chr4.3:5412180-5412199 | MS.gene55740:CDS | 45.0% | |
| TCACCAACGGCAAATATTCC+AGG | + | chr4.3:5411037-5411056 | None:intergenic | 45.0% | |
| TCATATCTCCGTGCAAGAGA+AGG | + | chr4.3:5409962-5409981 | None:intergenic | 45.0% | |
| TGACACTCATTGTGAAACGG+AGG | + | chr4.3:5410085-5410104 | None:intergenic | 45.0% | |
| TGTAGATCATGCTCGCAGAT+CGG | - | chr4.3:5411243-5411262 | MS.gene55740:intron | 45.0% | |
| TGTAGGTATGTGATCGTTGG+CGG | - | chr4.3:5407451-5407470 | MS.gene55740:intron | 45.0% | |
| TGTTCACTCCTTCTCTTGCA+CGG | - | chr4.3:5409951-5409970 | MS.gene55740:intron | 45.0% | |
| TTCAAACCCACCCTCTCAAA+GGG | + | chr4.3:5410696-5410715 | None:intergenic | 45.0% | |
| ! | AACATGGGGGGTTCTAACAA+AGG | + | chr4.3:5410910-5410929 | None:intergenic | 45.0% |
| ! | AGAGGCGTAACATCTATGGA+AGG | + | chr4.3:5407340-5407359 | None:intergenic | 45.0% |
| ! | CGTAAGAGGCGTAACATCTA+TGG | + | chr4.3:5407344-5407363 | None:intergenic | 45.0% |
| ! | GAAGCCCTAGAAAAGTATGG+TGG | - | chr4.3:5411446-5411465 | MS.gene55740:intron | 45.0% |
| ! | GCGATTTTCATTCGCGTAAG+AGG | + | chr4.3:5407358-5407377 | None:intergenic | 45.0% |
| !! | ATGTTGGTGGTATACAGGTG+AGG | - | chr4.3:5410721-5410740 | MS.gene55740:CDS | 45.0% |
| !! | CTGCCTAGTTTTCCAGAAAC+AGG | + | chr4.3:5411137-5411156 | None:intergenic | 45.0% |
| !! | GCTAGTTCTAATGGTAACGG+AGG | - | chr4.3:5410420-5410439 | MS.gene55740:intron | 45.0% |
| !! | TTCAGGTTGATGGTCTGTTC+CGG | - | chr4.3:5411002-5411021 | MS.gene55740:intron | 45.0% |
| AAATGCAACCTCAGTGGAGG+AGG | - | chr4.3:5412183-5412202 | MS.gene55740:CDS | 50.0% | |
| AGATTGAAGAACGGGGATGG+AGG | + | chr4.3:5410028-5410047 | None:intergenic | 50.0% | |
| ATCAATCGGAGGCTGTCTTC+TGG | + | chr4.3:5412149-5412168 | None:intergenic | 50.0% | |
| CAAAGCTTACTTGTTCCCGC+CGG | - | chr4.3:5407688-5407707 | MS.gene55740:intron | 50.0% | |
| CATACTTGTGTTGGATCCGG+TGG | - | chr4.3:5407856-5407875 | MS.gene55740:intron | 50.0% | |
| CCATGCATGGGTTTAACTCC+CGG | + | chr4.3:5409771-5409790 | None:intergenic | 50.0% | |
| CGACACTCATTGTGAAACGG+AGG | - | chr4.3:5410277-5410296 | MS.gene55740:CDS | 50.0% | |
| GAAAGCGGCTACATCACCAA+CGG | + | chr4.3:5411050-5411069 | None:intergenic | 50.0% | |
| GCTGCTGTGAAACTTGGAGA+TGG | - | chr4.3:5410447-5410466 | MS.gene55740:intron | 50.0% | |
| GGACCAAATCAGCAGAAGCA+TGG | + | chr4.3:5411818-5411837 | None:intergenic | 50.0% | |
| GTTCTCTCAAACAGACTCGC+AGG | + | chr4.3:5407982-5408001 | None:intergenic | 50.0% | |
| ! | GCACCATGCTTCTGCTGATT+TGG | - | chr4.3:5411812-5411831 | MS.gene55740:intron | 50.0% |
| ! | TGTAGCCGCTTTCCCTTTGA+AGG | - | chr4.3:5411057-5411076 | MS.gene55740:intron | 50.0% |
| !! | AGACGTGCTGGCTTCTTATC+CGG | + | chr4.3:5407710-5407729 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGCTGTGAAACT+TGG | - | chr4.3:5410441-5410460 | MS.gene55740:intron | 50.0% |
| !! | TGATGCGCTGGTTTCATCGT+TGG | - | chr4.3:5408781-5408800 | MS.gene55740:CDS | 50.0% |
| AGGAGGCCCTAGACATTGCT+CGG | - | chr4.3:5412200-5412219 | MS.gene55740:CDS | 55.0% | |
| AGGTATGTGATCGTTGGCGG+AGG | - | chr4.3:5407454-5407473 | MS.gene55740:intron | 55.0% | |
| ATTGGAGCGAAGCCTGCTGT+GGG | - | chr4.3:5410669-5410688 | MS.gene55740:CDS | 55.0% | |
| CCGGGAGTTAAACCCATGCA+TGG | - | chr4.3:5409768-5409787 | MS.gene55740:intron | 55.0% | |
| CGGAGTTTGCCTTTCTCCAC+CGG | + | chr4.3:5407875-5407894 | None:intergenic | 55.0% | |
| CGGCGGGAACAAGTAAGCTT+TGG | + | chr4.3:5407690-5407709 | None:intergenic | 55.0% | |
| CGGTGGAGAAAGGCAAACTC+CGG | - | chr4.3:5407873-5407892 | MS.gene55740:intron | 55.0% | |
| CTACGGGATGTACAGCCTCA+AGG | - | chr4.3:5408608-5408627 | MS.gene55740:intron | 55.0% | |
| CTGTTCCGGACAAGCATTCC+TGG | - | chr4.3:5411016-5411035 | MS.gene55740:intron | 55.0% | |
| GAGAAAGGCAAACTCCGGAG+TGG | - | chr4.3:5407878-5407897 | MS.gene55740:intron | 55.0% | |
| GGCTGTCTTCTGGCAAGTTC+AGG | + | chr4.3:5412139-5412158 | None:intergenic | 55.0% | |
| GTCTTCTGGCAAGTTCAGGC+AGG | + | chr4.3:5412135-5412154 | None:intergenic | 55.0% | |
| GTGTTGGATCCGGTGGAGAA+AGG | - | chr4.3:5407863-5407882 | MS.gene55740:intron | 55.0% | |
| TGGTATACAGGTGAGGCCAG+TGG | - | chr4.3:5410728-5410747 | MS.gene55740:CDS | 55.0% | |
| TGTTGAAAGTGGGAGCCCTG+AGG | - | chr4.3:5411891-5411910 | MS.gene55740:intron | 55.0% | |
| TGTTGCAGATGCTGATGCGC+TGG | - | chr4.3:5408769-5408788 | MS.gene55740:CDS | 55.0% | |
| TTGCTGCTGCAGCTGTTGCT+TGG | - | chr4.3:5409207-5409226 | MS.gene55740:intron | 55.0% | |
| ! | TGCTGTGGGTCCCTTTGAGA+GGG | - | chr4.3:5410683-5410702 | MS.gene55740:CDS | 55.0% |
| CATTGGAGCGAAGCCTGCTG+TGG | - | chr4.3:5410668-5410687 | MS.gene55740:CDS | 60.0% | |
| CTCTCAAAGGGACCCACAGC+AGG | + | chr4.3:5410684-5410703 | None:intergenic | 60.0% | |
| CTGCTGTGGGTCCCTTTGAG+AGG | - | chr4.3:5410682-5410701 | MS.gene55740:CDS | 60.0% | |
| GATCGTTGGCGGAGGAAACG+CGG | - | chr4.3:5407462-5407481 | MS.gene55740:intron | 60.0% | |
| GCTCGCACTTTCGTCGAGCA+TGG | - | chr4.3:5407496-5407515 | MS.gene55740:intron | 60.0% | |
| GGAGGCCCTAGACATTGCTC+GGG | - | chr4.3:5412201-5412220 | MS.gene55740:CDS | 60.0% | |
| ! | GTGGGTCCCTTTGAGAGGGT+GGG | - | chr4.3:5410687-5410706 | MS.gene55740:CDS | 60.0% |
| ! | TGTGGGTCCCTTTGAGAGGG+TGG | - | chr4.3:5410686-5410705 | MS.gene55740:CDS | 60.0% |
| !! | CGTGCTGGCTTCTTATCCGG+CGG | + | chr4.3:5407707-5407726 | None:intergenic | 60.0% |
| !! | GTGCTGGCTTCTTATCCGGC+GGG | + | chr4.3:5407706-5407725 | None:intergenic | 60.0% |
| ! | GTCTAGGGCCTCCTCCACTG+AGG | + | chr4.3:5412194-5412213 | None:intergenic | 65.0% |
| CGTTGGCGGAGGAAACGCGG+CGG | - | chr4.3:5407465-5407484 | MS.gene55740:intron | 70.0% | |
| GTCGAGCATGGCGTCGCCGA+TGG | - | chr4.3:5407508-5407527 | MS.gene55740:intron | 70.0% | |
| GTTGGCGGAGGAAACGCGGC+GGG | - | chr4.3:5407466-5407485 | MS.gene55740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5407219 | 5412246 | 5407219 | ID=MS.gene55740 |
| chr4.3 | mRNA | 5407219 | 5412246 | 5407219 | ID=MS.gene55740.t1;Parent=MS.gene55740 |
| chr4.3 | exon | 5412086 | 5412246 | 5412086 | ID=MS.gene55740.t1.exon1;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5412086 | 5412246 | 5412086 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5411910 | 5412009 | 5411910 | ID=MS.gene55740.t1.exon2;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5411910 | 5412009 | 5411910 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5411732 | 5411809 | 5411732 | ID=MS.gene55740.t1.exon3;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5411732 | 5411809 | 5411732 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5411544 | 5411615 | 5411544 | ID=MS.gene55740.t1.exon4;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5411544 | 5411615 | 5411544 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5410836 | 5410954 | 5410836 | ID=MS.gene55740.t1.exon5;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5410836 | 5410954 | 5410836 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5410663 | 5410747 | 5410663 | ID=MS.gene55740.t1.exon6;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5410663 | 5410747 | 5410663 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5410221 | 5410310 | 5410221 | ID=MS.gene55740.t1.exon7;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5410221 | 5410310 | 5410221 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5409447 | 5409548 | 5409447 | ID=MS.gene55740.t1.exon8;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5409447 | 5409548 | 5409447 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5408974 | 5409069 | 5408974 | ID=MS.gene55740.t1.exon9;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5408974 | 5409069 | 5408974 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5408728 | 5408808 | 5408728 | ID=MS.gene55740.t1.exon10;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5408728 | 5408808 | 5408728 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5408387 | 5408458 | 5408387 | ID=MS.gene55740.t1.exon11;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5408387 | 5408458 | 5408387 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5408157 | 5408251 | 5408157 | ID=MS.gene55740.t1.exon12;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5408157 | 5408251 | 5408157 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5407978 | 5408066 | 5407978 | ID=MS.gene55740.t1.exon13;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5407978 | 5408066 | 5407978 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5407765 | 5407827 | 5407765 | ID=MS.gene55740.t1.exon14;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5407765 | 5407827 | 5407765 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5407553 | 5407593 | 5407553 | ID=MS.gene55740.t1.exon15;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5407553 | 5407593 | 5407553 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| chr4.3 | exon | 5407219 | 5407344 | 5407219 | ID=MS.gene55740.t1.exon16;Parent=MS.gene55740.t1 |
| chr4.3 | CDS | 5407219 | 5407344 | 5407219 | ID=cds.MS.gene55740.t1;Parent=MS.gene55740.t1 |
| Gene Sequence |
| Protein sequence |
