Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06007.t1 | XP_013447102.1 | 98.2 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 1.40E-272 | 948.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06007.t1 | P92947 | 76.1 | 490 | 110 | 3 | 1 | 487 | 8 | 493 | 2.0e-216 | 753.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06007.t1 | A0A072U5J4 | 98.2 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 9.7e-273 | 948.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06007 | MS.gene55738 | 0.918852 | 9.34E-87 | -1.69E-46 |
| MS.gene06007 | MS.gene55740 | 0.98453 | 7.89E-161 | -1.69E-46 |
| MS.gene06007 | MS.gene89715 | 0.813638 | 2.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048313 | MS.gene06007 | PPI |
| MS.gene06007 | MS.gene003186 | PPI |
| MS.gene06007 | MS.gene02160 | PPI |
| MS.gene02843 | MS.gene06007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06007.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 0.0 | 984 |
| MS.gene06007.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 0.0 | 982 |
| MS.gene06007.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 10 | 455 | 0.0 | 902 |
| MS.gene06007.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 1 | 446 | 0.0 | 902 |
| MS.gene06007.t1 | MTR_1g060620 | 46.387 | 429 | 205 | 8 | 49 | 464 | 2 | 418 | 1.66e-126 | 375 |
| MS.gene06007.t1 | MTR_7g034715 | 45.047 | 424 | 212 | 9 | 55 | 469 | 7 | 418 | 8.09e-125 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06007.t1 | AT1G63940 | 76.122 | 490 | 110 | 3 | 1 | 487 | 8 | 493 | 0.0 | 756 |
| MS.gene06007.t1 | AT1G63940 | 76.122 | 490 | 110 | 3 | 1 | 487 | 1 | 486 | 0.0 | 756 |
| MS.gene06007.t1 | AT1G63940 | 75.306 | 490 | 110 | 4 | 1 | 487 | 1 | 482 | 0.0 | 741 |
| MS.gene06007.t1 | AT1G63940 | 75.240 | 416 | 96 | 3 | 1 | 413 | 1 | 412 | 0.0 | 631 |
| MS.gene06007.t1 | AT3G52880 | 44.601 | 426 | 211 | 8 | 49 | 461 | 2 | 415 | 2.12e-118 | 355 |
| MS.gene06007.t1 | AT5G03630 | 44.318 | 440 | 220 | 8 | 54 | 480 | 8 | 435 | 9.26e-117 | 350 |
| MS.gene06007.t1 | AT3G52880 | 44.634 | 410 | 202 | 8 | 65 | 461 | 50 | 447 | 2.08e-112 | 340 |
| MS.gene06007.t1 | AT3G27820 | 43.990 | 416 | 214 | 8 | 55 | 463 | 7 | 410 | 2.60e-112 | 341 |
| MS.gene06007.t1 | AT3G09940 | 40.633 | 411 | 216 | 10 | 69 | 464 | 23 | 420 | 3.38e-103 | 316 |
| MS.gene06007.t1 | AT3G09940 | 40.389 | 411 | 209 | 11 | 69 | 464 | 23 | 412 | 4.01e-99 | 305 |
| MS.gene06007.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene06007.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene06007.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene06007.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
| MS.gene06007.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.30e-11 | 66.2 |
Find 120 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGAGAAACGGTTGAAAT+TGG | 0.238262 | 4.1:-5348723 | MS.gene06007:CDS |
| TATCCTGCATTTCAGGTTGA+TGG | 0.259570 | 4.1:-5349367 | MS.gene06007:intron |
| TCTGGAAAGCTTCTTAAGTA+TGG | 0.270894 | 4.1:-5351788 | MS.gene06007:CDS |
| ATTAGGTTTCCAGATAAAAT+TGG | 0.282978 | 4.1:-5351646 | MS.gene06007:intron |
| CGTAAGAGGCGTAACATCTA+TGG | 0.323566 | 4.1:+5353018 | None:intergenic |
| CTGTTCCGGACAAGCATTCC+TGG | 0.324547 | 4.1:-5349343 | MS.gene06007:CDS |
| CAAACTTTGACAACAAGTTC+TGG | 0.350397 | 4.1:-5351806 | MS.gene06007:CDS |
| GAGTGAACAATCTTTGTAAA+AGG | 0.353339 | 4.1:+5350422 | None:intergenic |
| AAAACCCTTGAGTAGAAGTA+TGG | 0.356865 | 4.1:+5348948 | None:intergenic |
| ATCAATCGGAGGCTGTCTTC+TGG | 0.360441 | 4.1:+5348214 | None:intergenic |
| GGCTGTCTTCTGGCAAGTTC+AGG | 0.361852 | 4.1:+5348224 | None:intergenic |
| CTTTGTAAAAGGTGATCTTC+AGG | 0.364643 | 4.1:+5350433 | None:intergenic |
| TTCAGGTTGATGGTCTGTTC+CGG | 0.376519 | 4.1:-5349357 | MS.gene06007:intron |
| TGTAGCCGCTTTCCCTTTGA+AGG | 0.382255 | 4.1:-5349302 | MS.gene06007:intron |
| GGGTGCCTCCATTAAAAGTT+TGG | 0.382945 | 4.1:-5349964 | MS.gene06007:CDS |
| AAAATTGGCGGAAACCTATC+TGG | 0.393328 | 4.1:-5351631 | MS.gene06007:CDS |
| TATCTGGTGTTCACTATGTT+CGG | 0.396099 | 4.1:-5351615 | MS.gene06007:CDS |
| AGTTTGGAAGCTAGTTCTAA+TGG | 0.403646 | 4.1:-5349948 | MS.gene06007:CDS |
| CGGAGTTTGCCTTTCTCCAC+CGG | 0.409361 | 4.1:+5352487 | None:intergenic |
| GTAGTTGGAGGTGGTTATAT+AGG | 0.417824 | 4.1:-5351183 | MS.gene06007:CDS |
| TTTCAGGTAATTATAGGCAT+TGG | 0.430590 | 4.1:-5349708 | MS.gene06007:intron |
| TAGGGGTTTCATACTTGTGT+TGG | 0.430901 | 4.1:-5352512 | MS.gene06007:CDS |
| GAAGAACTCTACCAAAAGAA+TGG | 0.434145 | 4.1:-5350379 | MS.gene06007:CDS |
| AAGAACTCTACCAAAAGAAT+GGG | 0.434278 | 4.1:-5350378 | MS.gene06007:CDS |
| TTGCTGCTGCAGCTGTTGCT+TGG | 0.440762 | 4.1:-5351152 | MS.gene06007:CDS |
| CGGCGGGAACAAGTAAGCTT+TGG | 0.443429 | 4.1:+5352672 | None:intergenic |
| CCTTTGAACAGTTGGAGAAA+CGG | 0.449926 | 4.1:-5348733 | MS.gene06007:intron |
| TCACCAACGGCAAATATTCC+AGG | 0.450460 | 4.1:+5349325 | None:intergenic |
| TTTCATACTTGTGTTGGATC+CGG | 0.452635 | 4.1:-5352506 | MS.gene06007:CDS |
| GTGGGTCCCTTTGAGAGGGT+GGG | 0.453084 | 4.1:-5349672 | MS.gene06007:CDS |
| TGAAGTTTGGCTTTATCAAT+CGG | 0.453211 | 4.1:+5348200 | None:intergenic |
| AAGGAAGCCCTAGAAAAGTA+TGG | 0.455277 | 4.1:-5348917 | MS.gene06007:CDS |
| GTTAAAGCAGGACGCTCATA+AGG | 0.458093 | 4.1:+5352694 | None:intergenic |
| GTCGAGCATGGCGTCGCCGA+TGG | 0.468901 | 4.1:-5352851 | MS.gene06007:CDS |
| TCTTTGTATTGTTACTAAAG+AGG | 0.470517 | 4.1:-5352825 | MS.gene06007:intron |
| ATATTCCAGGAATGCTTGTC+CGG | 0.470788 | 4.1:+5349338 | None:intergenic |
| TACTGATGTTGGTGGTATAC+AGG | 0.474240 | 4.1:-5349643 | MS.gene06007:intron |
| GTCTTCTGGCAAGTTCAGGC+AGG | 0.474739 | 4.1:+5348228 | None:intergenic |
| GGTGTTGCTGCTGTGAAACT+TGG | 0.478567 | 4.1:-5349918 | MS.gene06007:CDS |
| TGCTGTGGGTCCCTTTGAGA+GGG | 0.480462 | 4.1:-5349676 | MS.gene06007:CDS |
| ATCTTCCATACTTCTACTCA+AGG | 0.480887 | 4.1:-5348953 | MS.gene06007:CDS |
| ATCTGGTGTTCACTATGTTC+GGG | 0.484399 | 4.1:-5351614 | MS.gene06007:CDS |
| CCGGAGTGGTATAAAGAGAA+AGG | 0.486714 | 4.1:-5352467 | MS.gene06007:CDS |
| CATGTTCCACTCGAGAAATC+CGG | 0.487129 | 4.1:+5349137 | None:intergenic |
| AAGGGAGTTCTTGTTGAAAG+TGG | 0.487360 | 4.1:-5348480 | MS.gene06007:CDS |
| AGACGTGCTGGCTTCTTATC+CGG | 0.488388 | 4.1:+5352652 | None:intergenic |
| TGTGGGTCCCTTTGAGAGGG+TGG | 0.493473 | 4.1:-5349673 | MS.gene06007:CDS |
| AGTTAACAGTATACCTTCAA+AGG | 0.502143 | 4.1:+5349289 | None:intergenic |
| TGTAGGTATGTGATCGTTGG+CGG | 0.503279 | 4.1:-5352908 | MS.gene06007:intron |
| CTTAAACACACACTTTCTAT+CGG | 0.503444 | 4.1:-5353113 | MS.gene06007:CDS |
| CTGCTGTGGGTCCCTTTGAG+AGG | 0.505488 | 4.1:-5349677 | MS.gene06007:CDS |
| GTGGGTTTGAATACTGATGT+TGG | 0.506009 | 4.1:-5349654 | MS.gene06007:CDS |
| ATTTGTAGGTATGTGATCGT+TGG | 0.508034 | 4.1:-5352911 | MS.gene06007:intron |
| AAGATTCCCGAGCAATGTCT+AGG | 0.510266 | 4.1:+5348153 | None:intergenic |
| CATTGGAGCGAAGCCTGCTG+TGG | 0.512600 | 4.1:-5349691 | MS.gene06007:CDS |
| AAATTGGACAGATCTACAAC+CGG | 0.512737 | 4.1:-5349156 | MS.gene06007:intron |
| AGGAGGCCCTAGACATTGCT+CGG | 0.512883 | 4.1:-5348160 | MS.gene06007:CDS |
| AACAATACAAAGACGGCCAT+CGG | 0.513414 | 4.1:+5352835 | None:intergenic |
| GCTCGCACTTTCGTCGAGCA+TGG | 0.514884 | 4.1:-5352863 | MS.gene06007:CDS |
| AAGTAAGCTTTGGTTAAAGC+AGG | 0.518285 | 4.1:+5352682 | None:intergenic |
| TGGAGGTGGTTATATAGGAA+TGG | 0.519829 | 4.1:-5351178 | MS.gene06007:CDS |
| CTCTCAAAGGGACCCACAGC+AGG | 0.521993 | 4.1:+5349678 | None:intergenic |
| GAATGGGGTCAAAATATTGA+AGG | 0.522616 | 4.1:-5350362 | MS.gene06007:intron |
| GTGTTGGATCCGGTGGAGAA+AGG | 0.523177 | 4.1:-5352496 | MS.gene06007:CDS |
| AAATGCAACCTCAGTGGAGG+AGG | 0.524675 | 4.1:-5348177 | MS.gene06007:CDS |
| ATCTATTGTTGAAGCCGATA+CGG | 0.524804 | 4.1:-5349889 | MS.gene06007:intron |
| GTATAAAGAGAAAGGGATTG+AGG | 0.525751 | 4.1:-5352459 | MS.gene06007:intron |
| TTCAAACCCACCCTCTCAAA+GGG | 0.525859 | 4.1:+5349666 | None:intergenic |
| GAACATAGTGAACACCAGAT+AGG | 0.525885 | 4.1:+5351617 | None:intergenic |
| TCATATCTCCGTGCAAGAGA+AGG | 0.531450 | 4.1:+5350400 | None:intergenic |
| GTTAACAGTATACCTTCAAA+GGG | 0.531790 | 4.1:+5349290 | None:intergenic |
| AGGTTTCCAGATAAAATTGG+CGG | 0.534285 | 4.1:-5351643 | MS.gene06007:CDS |
| CGGAGTGGTATAAAGAGAAA+GGG | 0.546012 | 4.1:-5352466 | MS.gene06007:CDS |
| TGTTGCAGATGCTGATGCGC+TGG | 0.548090 | 4.1:-5351590 | MS.gene06007:CDS |
| TGTTCACTCCTTCTCTTGCA+CGG | 0.552103 | 4.1:-5350408 | MS.gene06007:CDS |
| ATTCCTGGAATATTTGCCGT+TGG | 0.553532 | 4.1:-5349328 | MS.gene06007:CDS |
| TGATGCGCTGGTTTCATCGT+TGG | 0.555619 | 4.1:-5351578 | MS.gene06007:intron |
| CCTTTCTCTTTATACCACTC+CGG | 0.556098 | 4.1:+5352467 | None:intergenic |
| ATTCTTACAGGAAGACGTGC+TGG | 0.556201 | 4.1:+5352640 | None:intergenic |
| GGATCGCTTATTATCGCTAC+GGG | 0.559989 | 4.1:-5351767 | MS.gene06007:CDS |
| GAAGCTAGTTCTAATGGTAA+CGG | 0.561867 | 4.1:-5349942 | MS.gene06007:CDS |
| GTTGGCGGAGGAAACGCGGC+GGG | 0.566996 | 4.1:-5352893 | MS.gene06007:CDS |
| AAGGTTGTAGTAGTTGGAGG+TGG | 0.567180 | 4.1:-5351192 | MS.gene06007:CDS |
| ATTCAAACCCACCCTCTCAA+AGG | 0.569035 | 4.1:+5349665 | None:intergenic |
| GCTGCTGTGAAACTTGGAGA+TGG | 0.572397 | 4.1:-5349912 | MS.gene06007:CDS |
| AGGGAGTTCTTGTTGAAAGT+GGG | 0.573102 | 4.1:-5348479 | MS.gene06007:CDS |
| CATACTTGTGTTGGATCCGG+TGG | 0.574095 | 4.1:-5352503 | MS.gene06007:CDS |
| GGAGGCCCTAGACATTGCTC+GGG | 0.578113 | 4.1:-5348159 | MS.gene06007:CDS |
| ATTGGAGCGAAGCCTGCTGT+GGG | 0.582408 | 4.1:-5349690 | MS.gene06007:CDS |
| TCTTCCATACTTCTACTCAA+GGG | 0.588304 | 4.1:-5348952 | MS.gene06007:CDS |
| GGTTTGAATACTGATGTTGG+TGG | 0.591995 | 4.1:-5349651 | MS.gene06007:CDS |
| TGTAGATCATGCTCGCAGAT+CGG | 0.594852 | 4.1:-5349116 | MS.gene06007:CDS |
| AGGTATGTGATCGTTGGCGG+AGG | 0.595324 | 4.1:-5352905 | MS.gene06007:CDS |
| AGATTCCCGAGCAATGTCTA+GGG | 0.597044 | 4.1:+5348154 | None:intergenic |
| CGGTGGAGAAAGGCAAACTC+CGG | 0.606827 | 4.1:-5352486 | MS.gene06007:CDS |
| CTACAACCGGATTTCTCGAG+TGG | 0.609013 | 4.1:-5349143 | MS.gene06007:CDS |
| GTGCTGGCTTCTTATCCGGC+GGG | 0.609992 | 4.1:+5352656 | None:intergenic |
| CTACGGGATGTACAGCCTCA+AGG | 0.614506 | 4.1:-5351751 | MS.gene06007:intron |
| TGGATCGCTTATTATCGCTA+CGG | 0.615296 | 4.1:-5351768 | MS.gene06007:CDS |
| CAAAGCTTACTTGTTCCCGC+CGG | 0.625888 | 4.1:-5352671 | MS.gene06007:CDS |
| ATACTGCACAGGTAAGCTGA+AGG | 0.625932 | 4.1:-5348499 | MS.gene06007:intron |
| AATGAGAGTGAAGTTGATGA+AGG | 0.626813 | 4.1:+5353050 | None:intergenic |
| GATCGTTGGCGGAGGAAACG+CGG | 0.630231 | 4.1:-5352897 | MS.gene06007:CDS |
| TACTGCACAGGTAAGCTGAA+GGG | 0.630603 | 4.1:-5348498 | MS.gene06007:intron |
| TCAAAATGCAACCTCAGTGG+AGG | 0.632916 | 4.1:-5348180 | MS.gene06007:CDS |
| CGTGCTGGCTTCTTATCCGG+CGG | 0.634693 | 4.1:+5352655 | None:intergenic |
| GTATACCTTCAAAGGGAAAG+CGG | 0.644512 | 4.1:+5349297 | None:intergenic |
| AGTTTGGCTTTATCAATCGG+AGG | 0.650779 | 4.1:+5348203 | None:intergenic |
| CTTTAGTAACAATACAAAGA+CGG | 0.652221 | 4.1:+5352828 | None:intergenic |
| ACTTCAAAATGCAACCTCAG+TGG | 0.656573 | 4.1:-5348183 | MS.gene06007:CDS |
| AGAGGCGTAACATCTATGGA+AGG | 0.665407 | 4.1:+5353022 | None:intergenic |
| GTCTAGGGCCTCCTCCACTG+AGG | 0.670188 | 4.1:+5348169 | None:intergenic |
| CTGAAATCTGTTCTAAACAG+CGG | 0.672278 | 4.1:+5348124 | None:intergenic |
| GCTAGTTCTAATGGTAACGG+AGG | 0.676312 | 4.1:-5349939 | MS.gene06007:CDS |
| GAAAGCGGCTACATCACCAA+CGG | 0.696123 | 4.1:+5349312 | None:intergenic |
| TGTTGAAAGTGGGAGCCCTG+AGG | 0.697472 | 4.1:-5348469 | MS.gene06007:intron |
| AGAACTCTACCAAAAGAATG+GGG | 0.712465 | 4.1:-5350377 | MS.gene06007:CDS |
| GAGAAAGGCAAACTCCGGAG+TGG | 0.714360 | 4.1:-5352481 | MS.gene06007:CDS |
| GAAGCCCTAGAAAAGTATGG+TGG | 0.729332 | 4.1:-5348914 | MS.gene06007:CDS |
| CGTTGGCGGAGGAAACGCGG+CGG | 0.738727 | 4.1:-5352894 | MS.gene06007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAGAAATGAA+AGG | + | chr4.1:5352474-5352493 | None:intergenic | 10.0% |
| !! | GTTTATTTATCATTTATTAT+AGG | - | chr4.1:5349035-5349054 | MS.gene06007:intron | 10.0% |
| !! | AAAAAAAAACAACTAATTTC+AGG | + | chr4.1:5352254-5352273 | None:intergenic | 15.0% |
| !! | AGAAAAAAATAAAGTTGTAT+TGG | + | chr4.1:5351075-5351094 | None:intergenic | 15.0% |
| !! | GTAAATATCAATAAAATCAT+TGG | + | chr4.1:5349759-5349778 | None:intergenic | 15.0% |
| !! | TAAAATGTGATTTATTTATC+AGG | - | chr4.1:5350272-5350291 | MS.gene06007:intron | 15.0% |
| !! | TAACAAAGATAATATTTGAA+TGG | + | chr4.1:5349831-5349850 | None:intergenic | 15.0% |
| !! | TGTTAATGTTATTAATAACT+TGG | - | chr4.1:5352894-5352913 | MS.gene06007:CDS | 15.0% |
| !!! | AAATAAATCACATTTTAAAG+AGG | + | chr4.1:5350269-5350288 | None:intergenic | 15.0% |
| !!! | AAATATGATCTATTTTTTAC+AGG | + | chr4.1:5350823-5350842 | None:intergenic | 15.0% |
| !!! | AACAATCAATTTTAATGTAT+AGG | + | chr4.1:5350760-5350779 | None:intergenic | 15.0% |
| !!! | AATAAATCACATTTTAAAGA+GGG | + | chr4.1:5350268-5350287 | None:intergenic | 15.0% |
| !!! | ACAAATTGAAAAACTTTTTT+AGG | + | chr4.1:5350432-5350451 | None:intergenic | 15.0% |
| !!! | TATGTAATGCTTTTTATTTA+GGG | - | chr4.1:5348746-5348765 | MS.gene06007:intron | 15.0% |
| !!! | TTATGTAATGCTTTTTATTT+AGG | - | chr4.1:5348745-5348764 | MS.gene06007:intron | 15.0% |
| !!! | TTTTATAATGCTCAAATTAT+TGG | - | chr4.1:5351470-5351489 | MS.gene06007:intron | 15.0% |
| !! | AAAATTTCAACTCTTTATTG+AGG | + | chr4.1:5349156-5349175 | None:intergenic | 20.0% |
| !! | AAATTAACACAGAACTAATT+CGG | + | chr4.1:5352980-5352999 | None:intergenic | 20.0% |
| !! | ATAATGCTCAAATTAAATAG+AGG | + | chr4.1:5351284-5351303 | None:intergenic | 20.0% |
| !! | ATTGATATTTACGTTTATGA+TGG | - | chr4.1:5349767-5349786 | MS.gene06007:intron | 20.0% |
| !! | CTTTACAATCATTTGATATA+TGG | - | chr4.1:5349805-5349824 | MS.gene06007:intron | 20.0% |
| !! | TATCTGTGTTTCTTAAAAAT+TGG | - | chr4.1:5352104-5352123 | MS.gene06007:intron | 20.0% |
| !! | TTGATATTTACGTTTATGAT+GGG | - | chr4.1:5349768-5349787 | MS.gene06007:intron | 20.0% |
| !! | TTTATAGCCAAAAATTAAGT+TGG | - | chr4.1:5349995-5350014 | MS.gene06007:intron | 20.0% |
| !!! | AGATGTTGATTATCAATTTT+TGG | - | chr4.1:5351790-5351809 | MS.gene06007:CDS | 20.0% |
| !!! | ATGTAATGCTTTTTATTTAG+GGG | - | chr4.1:5348747-5348766 | MS.gene06007:intron | 20.0% |
| !!! | ATTTTTAAGAAAACAACAGA+AGG | + | chr4.1:5349575-5349594 | None:intergenic | 20.0% |
| !!! | TCTAATTTTCAGGTAATTAT+AGG | - | chr4.1:5351562-5351581 | MS.gene06007:intron | 20.0% |
| !!! | TCTGTTGTTTTCTTAAAAAT+TGG | - | chr4.1:5349575-5349594 | MS.gene06007:intron | 20.0% |
| !!! | TTAGTTCATTTTCTAAAAAG+TGG | + | chr4.1:5350307-5350326 | None:intergenic | 20.0% |
| !!! | TTTATGTCCAACTTAATTTT+TGG | + | chr4.1:5350005-5350024 | None:intergenic | 20.0% |
| !!! | TTTCCATTTTCTTTAATATG+TGG | - | chr4.1:5351420-5351439 | MS.gene06007:intron | 20.0% |
| !!! | TTTCCTACACTATTTTTATT+GGG | - | chr4.1:5350171-5350190 | MS.gene06007:intron | 20.0% |
| !!! | TTTTCCTACACTATTTTTAT+TGG | - | chr4.1:5350170-5350189 | MS.gene06007:intron | 20.0% |
| !!! | TTTTTTAATCGCTTATTTGT+AGG | - | chr4.1:5348351-5348370 | MS.gene06007:intron | 20.0% |
| !!! | TTTTTTTGAAGACATATGAA+AGG | + | chr4.1:5352442-5352461 | None:intergenic | 20.0% |
| ! | AAAGGAAAATTAATAGTGTG+AGG | + | chr4.1:5352528-5352547 | None:intergenic | 25.0% |
| ! | AAATTAAATAGAGGAAAGGA+AGG | + | chr4.1:5351275-5351294 | None:intergenic | 25.0% |
| ! | AGTACTTACTAGTTACAATA+TGG | + | chr4.1:5350975-5350994 | None:intergenic | 25.0% |
| ! | ATGCTGAATTGATGAAAATA+GGG | - | chr4.1:5348552-5348571 | MS.gene06007:intron | 25.0% |
| ! | ATGTTTGCAGATAAAATTAG+AGG | - | chr4.1:5351842-5351861 | MS.gene06007:CDS | 25.0% |
| ! | ATTAGGTTTCCAGATAAAAT+TGG | - | chr4.1:5349630-5349649 | MS.gene06007:intron | 25.0% |
| ! | ATTGAGGAAATATGTAACTA+AGG | + | chr4.1:5349140-5349159 | None:intergenic | 25.0% |
| ! | ATTTGAGCATTATATTCATC+AGG | - | chr4.1:5351291-5351310 | MS.gene06007:intron | 25.0% |
| ! | CATAAATTAGAGGAAAAATG+AGG | + | chr4.1:5350641-5350660 | None:intergenic | 25.0% |
| ! | CTCAAATAAGTCAATTCTAA+CGG | + | chr4.1:5348857-5348876 | None:intergenic | 25.0% |
| ! | CTTTAGTAACAATACAAAGA+CGG | + | chr4.1:5348451-5348470 | None:intergenic | 25.0% |
| ! | GAAAAAGAAATATACCGTAT+CGG | + | chr4.1:5351404-5351423 | None:intergenic | 25.0% |
| ! | GGTGAAATAGAAAAATAGAA+AGG | + | chr4.1:5352498-5352517 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAGATGAAT+TGG | + | chr4.1:5349611-5349630 | None:intergenic | 25.0% |
| ! | TAGGACATTAACAAGAAAAA+TGG | + | chr4.1:5350407-5350426 | None:intergenic | 25.0% |
| ! | TAGTATATTGTAACTGAGTA+AGG | - | chr4.1:5349321-5349340 | MS.gene06007:CDS | 25.0% |
| ! | TATGCTGAATTGATGAAAAT+AGG | - | chr4.1:5348551-5348570 | MS.gene06007:intron | 25.0% |
| ! | TCAATATTGCTGAATTTCAT+TGG | - | chr4.1:5352282-5352301 | MS.gene06007:intron | 25.0% |
| ! | TCATATTCTCTGATATTTAC+TGG | - | chr4.1:5348720-5348739 | MS.gene06007:CDS | 25.0% |
| ! | TCTTTGTATTGTTACTAAAG+AGG | - | chr4.1:5348451-5348470 | MS.gene06007:intron | 25.0% |
| ! | TGCTCAAAATACAAATTTCT+TGG | - | chr4.1:5350373-5350392 | MS.gene06007:CDS | 25.0% |
| ! | TGTGTTAATTGTATGTCAAT+GGG | - | chr4.1:5349194-5349213 | MS.gene06007:intron | 25.0% |
| ! | TGTTTGCAGATAAAATTAGA+GGG | - | chr4.1:5351843-5351862 | MS.gene06007:CDS | 25.0% |
| ! | TTAAGATGTTTATCTAAGCA+AGG | - | chr4.1:5349114-5349133 | MS.gene06007:CDS | 25.0% |
| ! | TTTGAGCATTATATTCATCA+GGG | - | chr4.1:5351292-5351311 | MS.gene06007:intron | 25.0% |
| ! | TTTGCATAATGTTCAAGATT+AGG | - | chr4.1:5351680-5351699 | MS.gene06007:intron | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | chr4.1:5351109-5351128 | None:intergenic | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | chr4.1:5351108-5351127 | None:intergenic | 25.0% |
| !! | ACTTTCTCTTTCTAATTTTC+AGG | - | chr4.1:5351552-5351571 | MS.gene06007:intron | 25.0% |
| !! | CTAATTTTATCTGCAAACAT+GGG | + | chr4.1:5351842-5351861 | None:intergenic | 25.0% |
| !! | CTTTTCAATGCTTTTCATAT+GGG | - | chr4.1:5349860-5349879 | MS.gene06007:intron | 25.0% |
| !! | TAATTTTATCTGCAAACATG+GGG | + | chr4.1:5351841-5351860 | None:intergenic | 25.0% |
| !! | TCTAATTTTATCTGCAAACA+TGG | + | chr4.1:5351843-5351862 | None:intergenic | 25.0% |
| !! | TCTTTTCAATGCTTTTCATA+TGG | - | chr4.1:5349859-5349878 | MS.gene06007:intron | 25.0% |
| !! | TGTTTGAAACCATAAATTAG+AGG | + | chr4.1:5350651-5350670 | None:intergenic | 25.0% |
| !! | TTAATTTTCCTTTGAACAGT+TGG | - | chr4.1:5352535-5352554 | MS.gene06007:intron | 25.0% |
| !!! | AATTGATTGTTGTTTTCTGA+AGG | - | chr4.1:5350769-5350788 | MS.gene06007:intron | 25.0% |
| !!! | ATCCAAAAAGTAGCTATTTT+AGG | + | chr4.1:5352589-5352608 | None:intergenic | 25.0% |
| !!! | ATCCTAAAATAGCTACTTTT+TGG | - | chr4.1:5352584-5352603 | MS.gene06007:intron | 25.0% |
| !!! | CTCATTTTTCCTCTAATTTA+TGG | - | chr4.1:5350639-5350658 | MS.gene06007:intron | 25.0% |
| !!! | CTGTTTGTTTTTTTATTTCC+AGG | - | chr4.1:5350050-5350069 | MS.gene06007:intron | 25.0% |
| !!! | TCATCTTCTATCTTGTTATT+AGG | - | chr4.1:5349613-5349632 | MS.gene06007:intron | 25.0% |
| !!! | TGAAAAACTTTTTTAGGCAT+AGG | + | chr4.1:5350426-5350445 | None:intergenic | 25.0% |
| !!! | TTCCTACACTATTTTTATTG+GGG | - | chr4.1:5350172-5350191 | MS.gene06007:intron | 25.0% |
| AAAAGAAACAATGTGGTTCT+TGG | + | chr4.1:5349978-5349997 | None:intergenic | 30.0% | |
| AAAAGAAAGATTGAAGAACG+GGG | + | chr4.1:5350952-5350971 | None:intergenic | 30.0% | |
| AAACATTGTTAAGTAAGTGC+CGG | - | chr4.1:5350666-5350685 | MS.gene06007:intron | 30.0% | |
| AACAATAAGTCATGTTAGAG+AGG | + | chr4.1:5349736-5349755 | None:intergenic | 30.0% | |
| AAGAACTCTACCAAAAGAAT+GGG | - | chr4.1:5350898-5350917 | MS.gene06007:intron | 30.0% | |
| AATATACTAAGACTCTCCTA+CGG | + | chr4.1:5349310-5349329 | None:intergenic | 30.0% | |
| AATTAATAGTGTGAGGAACA+AGG | + | chr4.1:5352521-5352540 | None:intergenic | 30.0% | |
| AGTTAACAGTATACCTTCAA+AGG | + | chr4.1:5351990-5352009 | None:intergenic | 30.0% | |
| ATATTGTAACTGAGTAAGGA+AGG | - | chr4.1:5349325-5349344 | MS.gene06007:CDS | 30.0% | |
| ATTAATAGTGTGAGGAACAA+GGG | + | chr4.1:5352520-5352539 | None:intergenic | 30.0% | |
| ATTCACCATAACATTCTTAC+AGG | + | chr4.1:5348651-5348670 | None:intergenic | 30.0% | |
| CAAAATATTTGCTTATCCAC+TGG | + | chr4.1:5351664-5351683 | None:intergenic | 30.0% | |
| CAGCATTACAATAACTTCAA+TGG | + | chr4.1:5349380-5349399 | None:intergenic | 30.0% | |
| CAGCCACATATTAAAGAAAA+TGG | + | chr4.1:5351426-5351445 | None:intergenic | 30.0% | |
| CATTCTTAGCTATTACGAAA+CGG | - | chr4.1:5349274-5349293 | MS.gene06007:intron | 30.0% | |
| CCAACATATGTATGAGATTA+TGG | + | chr4.1:5350724-5350743 | None:intergenic | 30.0% | |
| CCATAATCTCATACATATGT+TGG | - | chr4.1:5350721-5350740 | MS.gene06007:intron | 30.0% | |
| CTGTGTTAATTGTATGTCAA+TGG | - | chr4.1:5349193-5349212 | MS.gene06007:intron | 30.0% | |
| CTTAAACACACACTTTCTAT+CGG | - | chr4.1:5348163-5348182 | MS.gene06007:CDS | 30.0% | |
| CTTATTTCCATAAGTTCTCT+AGG | - | chr4.1:5348968-5348987 | MS.gene06007:intron | 30.0% | |
| GAAAAGAAAGATTGAAGAAC+GGG | + | chr4.1:5350953-5350972 | None:intergenic | 30.0% | |
| GAAAATTGTGAGAGAAAAGT+TGG | + | chr4.1:5351123-5351142 | None:intergenic | 30.0% | |
| GAAATTCAGCAATATTGACA+GGG | + | chr4.1:5352280-5352299 | None:intergenic | 30.0% | |
| GACATTAACAAGAAAAATGG+AGG | + | chr4.1:5350404-5350423 | None:intergenic | 30.0% | |
| GAGAATATGAACATAACTAC+TGG | + | chr4.1:5348710-5348729 | None:intergenic | 30.0% | |
| GAGTGAACAATCTTTGTAAA+AGG | + | chr4.1:5350857-5350876 | None:intergenic | 30.0% | |
| GCACACTATTAGTAATAATC+AGG | + | chr4.1:5352755-5352774 | None:intergenic | 30.0% | |
| GCTCAAATTAAATAGAGGAA+AGG | + | chr4.1:5351279-5351298 | None:intergenic | 30.0% | |
| GGAAAAGAAAGATTGAAGAA+CGG | + | chr4.1:5350954-5350973 | None:intergenic | 30.0% | |
| GTAAATAGACAAATACCTTG+AGG | + | chr4.1:5349543-5349562 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr4.1:5351099-5351118 | None:intergenic | 30.0% | |
| GTTAACAGTATACCTTCAAA+GGG | + | chr4.1:5351989-5352008 | None:intergenic | 30.0% | |
| GTTTATGACATAAGTTCTCT+AGG | - | chr4.1:5348930-5348949 | MS.gene06007:CDS | 30.0% | |
| TACTTCACTATTCAGCATTT+AGG | + | chr4.1:5350497-5350516 | None:intergenic | 30.0% | |
| TGAAATTCAGCAATATTGAC+AGG | + | chr4.1:5352281-5352300 | None:intergenic | 30.0% | |
| TGCTGAATTGATGAAAATAG+GGG | - | chr4.1:5348553-5348572 | MS.gene06007:intron | 30.0% | |
| TGGCTATAAAAGAAACAATG+TGG | + | chr4.1:5349985-5350004 | None:intergenic | 30.0% | |
| TTATATGTGACATTTCTGCT+CGG | - | chr4.1:5349890-5349909 | MS.gene06007:CDS | 30.0% | |
| TTCCCCAATAAAAATAGTGT+AGG | + | chr4.1:5350177-5350196 | None:intergenic | 30.0% | |
| TTTATCTGCAGCAATTTAGA+GGG | - | chr4.1:5351718-5351737 | MS.gene06007:intron | 30.0% | |
| ! | AATTTTATCTGCAAACATGG+GGG | + | chr4.1:5351840-5351859 | None:intergenic | 30.0% |
| ! | CAAAAGCATGATAATAGTCA+GGG | + | chr4.1:5350610-5350629 | None:intergenic | 30.0% |
| ! | CATTTTCTTTAATATGTGGC+TGG | - | chr4.1:5351424-5351443 | MS.gene06007:intron | 30.0% |
| ! | TCAGTATCAATGTTTTCTAC+TGG | + | chr4.1:5349446-5349465 | None:intergenic | 30.0% |
| ! | TTTCAGGTAATTATAGGCAT+TGG | - | chr4.1:5351568-5351587 | MS.gene06007:intron | 30.0% |
| !! | ACTAGCTTCCAAACTTTTAA+TGG | + | chr4.1:5351323-5351342 | None:intergenic | 30.0% |
| !! | CGAGTAAGAATTTTTGTTTG+AGG | + | chr4.1:5348193-5348212 | None:intergenic | 30.0% |
| !! | GAATTTCATTGGTGATTTTC+AGG | - | chr4.1:5352293-5352312 | MS.gene06007:intron | 30.0% |
| !! | TGAAGTTTGGCTTTATCAAT+CGG | + | chr4.1:5353079-5353098 | None:intergenic | 30.0% |
| !!! | ATATTTTGACCCCATTCTTT+TGG | + | chr4.1:5350911-5350930 | None:intergenic | 30.0% |
| !!! | CTGTTTTTTGAATGTGTATC+AGG | - | chr4.1:5353015-5353034 | MS.gene06007:CDS | 30.0% |
| AAAAAGGTTGTAGTAGTTGG+AGG | - | chr4.1:5350081-5350100 | MS.gene06007:intron | 35.0% | |
| AAAACAACAGAAGGTGAACT+GGG | + | chr4.1:5349566-5349585 | None:intergenic | 35.0% | |
| AAAACCCTTGAGTAGAAGTA+TGG | + | chr4.1:5352331-5352350 | None:intergenic | 35.0% | |
| AAACGACACTCATTGTGAAA+CGG | - | chr4.1:5351191-5351210 | MS.gene06007:CDS | 35.0% | |
| AACATTGTTAAGTAAGTGCC+GGG | - | chr4.1:5350667-5350686 | MS.gene06007:intron | 35.0% | |
| AAGACGAAAACAATCCTTAC+CGG | + | chr4.1:5352617-5352636 | None:intergenic | 35.0% | |
| AAGCTATCCTAGAGAACTTA+TGG | + | chr4.1:5348978-5348997 | None:intergenic | 35.0% | |
| AAGTGACACTCATTGTGAAA+CGG | + | chr4.1:5351005-5351024 | None:intergenic | 35.0% | |
| AATCCACGCATCAATACTAA+AGG | + | chr4.1:5352641-5352660 | None:intergenic | 35.0% | |
| ACATTCAAAAAACAGCTCTC+AGG | + | chr4.1:5353010-5353029 | None:intergenic | 35.0% | |
| ACTACACTAGAAATTACCTC+AGG | + | chr4.1:5352826-5352845 | None:intergenic | 35.0% | |
| AGAACTCTACCAAAAGAATG+GGG | - | chr4.1:5350899-5350918 | MS.gene06007:intron | 35.0% | |
| AGAGGAAAAATGAGGCTAAA+AGG | + | chr4.1:5350633-5350652 | None:intergenic | 35.0% | |
| AGGTTTCCAGATAAAATTGG+CGG | - | chr4.1:5349633-5349652 | MS.gene06007:intron | 35.0% | |
| ATCTATTGTTGAAGCCGATA+CGG | - | chr4.1:5351387-5351406 | MS.gene06007:intron | 35.0% | |
| ATCTTCCATACTTCTACTCA+AGG | - | chr4.1:5352323-5352342 | MS.gene06007:intron | 35.0% | |
| ATTAGAGAAGAAGAGGTCAA+TGG | - | chr4.1:5351519-5351538 | MS.gene06007:intron | 35.0% | |
| ATTGATCATGTTCTTGCTGA+AGG | + | chr4.1:5348494-5348513 | None:intergenic | 35.0% | |
| ATTTGTAGGTATGTGATCGT+TGG | - | chr4.1:5348365-5348384 | MS.gene06007:intron | 35.0% | |
| CAAACTTTGACAACAAGTTC+TGG | - | chr4.1:5349470-5349489 | MS.gene06007:intron | 35.0% | |
| CCATTCCATTTCAAACAATC+TGG | + | chr4.1:5349238-5349257 | None:intergenic | 35.0% | |
| CTACACTAGAAATTACCTCA+GGG | + | chr4.1:5352825-5352844 | None:intergenic | 35.0% | |
| CTTTATCTGCAGCAATTTAG+AGG | - | chr4.1:5351717-5351736 | MS.gene06007:intron | 35.0% | |
| CTTTGTAAAAGGTGATCTTC+AGG | + | chr4.1:5350846-5350865 | None:intergenic | 35.0% | |
| GAAGAACTCTACCAAAAGAA+TGG | - | chr4.1:5350897-5350916 | MS.gene06007:intron | 35.0% | |
| GAAGGACTAAGAGAATAGAA+TGG | + | chr4.1:5351257-5351276 | None:intergenic | 35.0% | |
| GAATGGGGTCAAAATATTGA+AGG | - | chr4.1:5350914-5350933 | MS.gene06007:intron | 35.0% | |
| GCTGAATTGATGAAAATAGG+GGG | - | chr4.1:5348554-5348573 | MS.gene06007:intron | 35.0% | |
| GTATAAAGAGAAAGGGATTG+AGG | - | chr4.1:5348817-5348836 | MS.gene06007:intron | 35.0% | |
| GTATTCTTATCCTGCATTTC+AGG | - | chr4.1:5351902-5351921 | MS.gene06007:intron | 35.0% | |
| GTCTTCCTGTAAGAATGTTA+TGG | - | chr4.1:5348643-5348662 | MS.gene06007:intron | 35.0% | |
| TATCTGGTGTTCACTATGTT+CGG | - | chr4.1:5349661-5349680 | MS.gene06007:CDS | 35.0% | |
| TCTGGAAAGCTTCTTAAGTA+TGG | - | chr4.1:5349488-5349507 | MS.gene06007:intron | 35.0% | |
| TCTTCCATACTTCTACTCAA+GGG | - | chr4.1:5352324-5352343 | MS.gene06007:intron | 35.0% | |
| TTAATAGTGTGAGGAACAAG+GGG | + | chr4.1:5352519-5352538 | None:intergenic | 35.0% | |
| TTTCATACTTGTGTTGGATC+CGG | - | chr4.1:5348770-5348789 | MS.gene06007:intron | 35.0% | |
| TTTCCAGGAAAAAGCGAAAA+AGG | - | chr4.1:5350065-5350084 | MS.gene06007:intron | 35.0% | |
| ! | AAGTAAGCTTTGGTTAAAGC+AGG | + | chr4.1:5348597-5348616 | None:intergenic | 35.0% |
| ! | AGCTTCCAAACTTTTAATGG+AGG | + | chr4.1:5351320-5351339 | None:intergenic | 35.0% |
| ! | ATTGTCAAAGTATCCATGCA+TGG | + | chr4.1:5350701-5350720 | None:intergenic | 35.0% |
| ! | ATTTTATCTGCAAACATGGG+GGG | + | chr4.1:5351839-5351858 | None:intergenic | 35.0% |
| ! | CAATTTGTTTCACTGCGTAA+AGG | - | chr4.1:5350444-5350463 | MS.gene06007:CDS | 35.0% |
| ! | CCAGATTGTTTGAAATGGAA+TGG | - | chr4.1:5349235-5349254 | MS.gene06007:intron | 35.0% |
| ! | GCAAAAGCATGATAATAGTC+AGG | + | chr4.1:5350611-5350630 | None:intergenic | 35.0% |
| ! | TCAAGGGTTTTTGAATACGA+AGG | - | chr4.1:5352340-5352359 | MS.gene06007:intron | 35.0% |
| ! | TTGTCAAAGTATCCATGCAT+GGG | + | chr4.1:5350700-5350719 | None:intergenic | 35.0% |
| ! | TTTTTGGATTGAATCCGGTA+AGG | - | chr4.1:5352600-5352619 | MS.gene06007:intron | 35.0% |
| !! | AACAACTAATTTCAGGTTGC+AGG | + | chr4.1:5352247-5352266 | None:intergenic | 35.0% |
| !! | AATGAGAGTGAAGTTGATGA+AGG | + | chr4.1:5348229-5348248 | None:intergenic | 35.0% |
| !! | AGGGTTTGCTTTTGAAAGAA+TGG | + | chr4.1:5350249-5350268 | None:intergenic | 35.0% |
| !! | AGTTTGGAAGCTAGTTCTAA+TGG | - | chr4.1:5351328-5351347 | MS.gene06007:intron | 35.0% |
| !! | ATTCCTGTTTCTGGAAAACT+AGG | - | chr4.1:5352048-5352067 | MS.gene06007:intron | 35.0% |
| !! | GAAGCTAGTTCTAATGGTAA+CGG | - | chr4.1:5351334-5351353 | MS.gene06007:intron | 35.0% |
| !! | TTCACAATGAGTGTCGTTTA+AGG | + | chr4.1:5351190-5351209 | None:intergenic | 35.0% |
| !! | TTTCCTTTAGTATTGATGCG+TGG | - | chr4.1:5352635-5352654 | MS.gene06007:intron | 35.0% |
| !!! | AAAGTATGGTGGCAGTTTTT+TGG | - | chr4.1:5352373-5352392 | MS.gene06007:intron | 35.0% |
| !!! | GCTACTTTTTGGATTGAATC+CGG | - | chr4.1:5352595-5352614 | MS.gene06007:intron | 35.0% |
| !!! | TGAGGTTGCATTTTGAAGTT+TGG | + | chr4.1:5353092-5353111 | None:intergenic | 35.0% |
| AAAATTGGCGGAAACCTATC+TGG | - | chr4.1:5349645-5349664 | MS.gene06007:CDS | 40.0% | |
| AAACAACAGAAGGTGAACTG+GGG | + | chr4.1:5349565-5349584 | None:intergenic | 40.0% | |
| AACAATACAAAGACGGCCAT+CGG | + | chr4.1:5348444-5348463 | None:intergenic | 40.0% | |
| AAGGAAGCCCTAGAAAAGTA+TGG | - | chr4.1:5352359-5352378 | MS.gene06007:intron | 40.0% | |
| AAGGGAGTTCTTGTTGAAAG+TGG | - | chr4.1:5352796-5352815 | MS.gene06007:intron | 40.0% | |
| ACTTCAAAATGCAACCTCAG+TGG | - | chr4.1:5353093-5353112 | MS.gene06007:CDS | 40.0% | |
| AGGGAGTTCTTGTTGAAAGT+GGG | - | chr4.1:5352797-5352816 | MS.gene06007:intron | 40.0% | |
| ATAGTGTGCTAATACTGCAC+AGG | - | chr4.1:5352766-5352785 | MS.gene06007:intron | 40.0% | |
| ATATTCCAGGAATGCTTGTC+CGG | + | chr4.1:5351941-5351960 | None:intergenic | 40.0% | |
| ATCTGGTGTTCACTATGTTC+GGG | - | chr4.1:5349662-5349681 | MS.gene06007:CDS | 40.0% | |
| ATGATAATAGTCAGGGTCCT+TGG | + | chr4.1:5350603-5350622 | None:intergenic | 40.0% | |
| ATTAAGACACAGCTCTACCA+AGG | - | chr4.1:5350583-5350602 | MS.gene06007:intron | 40.0% | |
| ATTCCTGGAATATTTGCCGT+TGG | - | chr4.1:5351948-5351967 | MS.gene06007:intron | 40.0% | |
| CCTTTCTCTTTATACCACTC+CGG | + | chr4.1:5348812-5348831 | None:intergenic | 40.0% | |
| CCTTTGAACAGTTGGAGAAA+CGG | - | chr4.1:5352543-5352562 | MS.gene06007:intron | 40.0% | |
| CGGAGTGGTATAAAGAGAAA+GGG | - | chr4.1:5348810-5348829 | MS.gene06007:intron | 40.0% | |
| CGTCTTCATTAGAGAAGAAG+AGG | - | chr4.1:5351512-5351531 | MS.gene06007:intron | 40.0% | |
| GAAAACAACAGAAGGTGAAC+TGG | + | chr4.1:5349567-5349586 | None:intergenic | 40.0% | |
| GAACATAGTGAACACCAGAT+AGG | + | chr4.1:5349662-5349681 | None:intergenic | 40.0% | |
| GCGAAAAAGGTTGTAGTAGT+TGG | - | chr4.1:5350078-5350097 | MS.gene06007:intron | 40.0% | |
| GCGACTAGAAAGACTTAATG+TGG | + | chr4.1:5350537-5350556 | None:intergenic | 40.0% | |
| GGACACCAGATTGTTTGAAA+TGG | - | chr4.1:5349230-5349249 | MS.gene06007:intron | 40.0% | |
| GGTTTGAATACTGATGTTGG+TGG | - | chr4.1:5351625-5351644 | MS.gene06007:CDS | 40.0% | |
| GTAGTTGGAGGTGGTTATAT+AGG | - | chr4.1:5350093-5350112 | MS.gene06007:intron | 40.0% | |
| GTATACCTTCAAAGGGAAAG+CGG | + | chr4.1:5351982-5352001 | None:intergenic | 40.0% | |
| GTGGGTTTGAATACTGATGT+TGG | - | chr4.1:5351622-5351641 | MS.gene06007:CDS | 40.0% | |
| GTTGGAGAAACGGTTGAAAT+TGG | - | chr4.1:5352553-5352572 | MS.gene06007:intron | 40.0% | |
| TAGGGGTTTCATACTTGTGT+TGG | - | chr4.1:5348764-5348783 | MS.gene06007:intron | 40.0% | |
| TCAATGGGACTGTGATACAA+TGG | - | chr4.1:5349209-5349228 | MS.gene06007:intron | 40.0% | |
| TGATCAGACATTCCTGTTTC+TGG | - | chr4.1:5352039-5352058 | MS.gene06007:intron | 40.0% | |
| TGGAGGTGGTTATATAGGAA+TGG | - | chr4.1:5350098-5350117 | MS.gene06007:intron | 40.0% | |
| TGGATCGCTTATTATCGCTA+CGG | - | chr4.1:5349508-5349527 | MS.gene06007:intron | 40.0% | |
| TGGATTATCTCTGAGCTTGA+GGG | - | chr4.1:5352655-5352674 | MS.gene06007:CDS | 40.0% | |
| TGTAATCAAAACCAACAGCG+TGG | + | chr4.1:5349407-5349426 | None:intergenic | 40.0% | |
| ! | AAACGGAGACATTTTACCGT+AGG | - | chr4.1:5349291-5349310 | MS.gene06007:intron | 40.0% |
| ! | AACTGCCACCATACTTTTCT+AGG | + | chr4.1:5352370-5352389 | None:intergenic | 40.0% |
| ! | ACTGCCACCATACTTTTCTA+GGG | + | chr4.1:5352369-5352388 | None:intergenic | 40.0% |
| ! | AGGTTTCCGCCAATTTTATC+TGG | + | chr4.1:5349642-5349661 | None:intergenic | 40.0% |
| ! | ATACCTTGAACTCGCTGTTT+TGG | + | chr4.1:5351872-5351891 | None:intergenic | 40.0% |
| ! | GGGTTCTAACAAAGGAAACA+CGG | + | chr4.1:5351819-5351838 | None:intergenic | 40.0% |
| !! | AGTTTGGCTTTATCAATCGG+AGG | + | chr4.1:5353076-5353095 | None:intergenic | 40.0% |
| !! | TACTGATGTTGGTGGTATAC+AGG | - | chr4.1:5351633-5351652 | MS.gene06007:CDS | 40.0% |
| !! | TATCCTGCATTTCAGGTTGA+TGG | - | chr4.1:5351909-5351928 | MS.gene06007:intron | 40.0% |
| !!! | CAACCTTTTTCGCTTTTTCC+TGG | + | chr4.1:5350071-5350090 | None:intergenic | 40.0% |
| !!! | TGGCAGTTTTTTGGAGACAA+TGG | - | chr4.1:5352382-5352401 | MS.gene06007:intron | 40.0% |
| AAGATTCCCGAGCAATGTCT+AGG | + | chr4.1:5353126-5353145 | None:intergenic | 45.0% | |
| AAGGTTGTAGTAGTTGGAGG+TGG | - | chr4.1:5350084-5350103 | MS.gene06007:intron | 45.0% | |
| AATGCTGAATTCCACGCTGT+TGG | - | chr4.1:5349393-5349412 | MS.gene06007:intron | 45.0% | |
| ACGGAGGGAGTAAGTAGTAA+TGG | - | chr4.1:5351210-5351229 | MS.gene06007:intron | 45.0% | |
| AGACCATCAACCTGAAATGC+AGG | + | chr4.1:5351915-5351934 | None:intergenic | 45.0% | |
| AGATTCCCGAGCAATGTCTA+GGG | + | chr4.1:5353125-5353144 | None:intergenic | 45.0% | |
| ATACTGCACAGGTAAGCTGA+AGG | - | chr4.1:5352777-5352796 | MS.gene06007:intron | 45.0% | |
| ATTCAAACCCACCCTCTCAA+AGG | + | chr4.1:5351614-5351633 | None:intergenic | 45.0% | |
| ATTCTTACAGGAAGACGTGC+TGG | + | chr4.1:5348639-5348658 | None:intergenic | 45.0% | |
| CATGTTCCACTCGAGAAATC+CGG | + | chr4.1:5352142-5352161 | None:intergenic | 45.0% | |
| CCGGAGTGGTATAAAGAGAA+AGG | - | chr4.1:5348809-5348828 | MS.gene06007:intron | 45.0% | |
| CCGTTTCTCCAACTGTTCAA+AGG | + | chr4.1:5352546-5352565 | None:intergenic | 45.0% | |
| CGGAGGGAGTAAGTAGTAAT+GGG | - | chr4.1:5351211-5351230 | MS.gene06007:intron | 45.0% | |
| GAAAGATTGAAGAACGGGGA+TGG | + | chr4.1:5350948-5350967 | None:intergenic | 45.0% | |
| GACACTCATTGTGAAACGGA+GGG | - | chr4.1:5351195-5351214 | MS.gene06007:CDS | 45.0% | |
| GACACTCATTGTGAAACGGA+GGG | + | chr4.1:5351214-5351195 | None:intergenic | 45.0% | |
| GAGAAGAAGAGGTCAATGGA+TGG | - | chr4.1:5351523-5351542 | MS.gene06007:intron | 45.0% | |
| GGATCGCTTATTATCGCTAC+GGG | - | chr4.1:5349509-5349528 | MS.gene06007:intron | 45.0% | |
| GGATTATCTCTGAGCTTGAG+GGG | - | chr4.1:5352656-5352675 | MS.gene06007:CDS | 45.0% | |
| GGGTGCCTCCATTAAAAGTT+TGG | - | chr4.1:5351312-5351331 | MS.gene06007:intron | 45.0% | |
| GTTAAAGCAGGACGCTCATA+AGG | + | chr4.1:5348585-5348604 | None:intergenic | 45.0% | |
| TACTGCACAGGTAAGCTGAA+GGG | - | chr4.1:5352778-5352797 | MS.gene06007:intron | 45.0% | |
| TAGCCAAAACAGCGAGTTCA+AGG | - | chr4.1:5351866-5351885 | MS.gene06007:intron | 45.0% | |
| TCAAAATGCAACCTCAGTGG+AGG | - | chr4.1:5353096-5353115 | MS.gene06007:CDS | 45.0% | |
| TCACCAACGGCAAATATTCC+AGG | + | chr4.1:5351954-5351973 | None:intergenic | 45.0% | |
| TCATATCTCCGTGCAAGAGA+AGG | + | chr4.1:5350879-5350898 | None:intergenic | 45.0% | |
| TGACACTCATTGTGAAACGG+AGG | + | chr4.1:5351002-5351021 | None:intergenic | 45.0% | |
| TGTAGATCATGCTCGCAGAT+CGG | - | chr4.1:5352160-5352179 | MS.gene06007:intron | 45.0% | |
| TGTAGGTATGTGATCGTTGG+CGG | - | chr4.1:5348368-5348387 | MS.gene06007:intron | 45.0% | |
| TGTTCACTCCTTCTCTTGCA+CGG | - | chr4.1:5350868-5350887 | MS.gene06007:intron | 45.0% | |
| TTCAAACCCACCCTCTCAAA+GGG | + | chr4.1:5351613-5351632 | None:intergenic | 45.0% | |
| ! | AACATGGGGGGTTCTAACAA+AGG | + | chr4.1:5351827-5351846 | None:intergenic | 45.0% |
| ! | AGAGGCGTAACATCTATGGA+AGG | + | chr4.1:5348257-5348276 | None:intergenic | 45.0% |
| ! | CGTAAGAGGCGTAACATCTA+TGG | + | chr4.1:5348261-5348280 | None:intergenic | 45.0% |
| ! | GAAGCCCTAGAAAAGTATGG+TGG | - | chr4.1:5352362-5352381 | MS.gene06007:intron | 45.0% |
| ! | GCGATTTTCATTCGCGTAAG+AGG | + | chr4.1:5348275-5348294 | None:intergenic | 45.0% |
| ! | GTGGATTATCTCTGAGCTTG+AGG | - | chr4.1:5352654-5352673 | MS.gene06007:CDS | 45.0% |
| !! | ATGTTGGTGGTATACAGGTG+AGG | - | chr4.1:5351638-5351657 | MS.gene06007:CDS | 45.0% |
| !! | CTGCCTAGTTTTCCAGAAAC+AGG | + | chr4.1:5352054-5352073 | None:intergenic | 45.0% |
| !! | GCTAGTTCTAATGGTAACGG+AGG | - | chr4.1:5351337-5351356 | MS.gene06007:intron | 45.0% |
| !! | TTCAGGTTGATGGTCTGTTC+CGG | - | chr4.1:5351919-5351938 | MS.gene06007:intron | 45.0% |
| AAATGCAACCTCAGTGGAGG+AGG | - | chr4.1:5353099-5353118 | MS.gene06007:CDS | 50.0% | |
| AGATTGAAGAACGGGGATGG+AGG | + | chr4.1:5350945-5350964 | None:intergenic | 50.0% | |
| ATCAATCGGAGGCTGTCTTC+TGG | + | chr4.1:5353065-5353084 | None:intergenic | 50.0% | |
| CAAAGCTTACTTGTTCCCGC+CGG | - | chr4.1:5348605-5348624 | MS.gene06007:intron | 50.0% | |
| CATACTTGTGTTGGATCCGG+TGG | - | chr4.1:5348773-5348792 | MS.gene06007:intron | 50.0% | |
| CCATGCATGGGTTTAACTCC+CGG | + | chr4.1:5350688-5350707 | None:intergenic | 50.0% | |
| CGACACTCATTGTGAAACGG+AGG | - | chr4.1:5351194-5351213 | MS.gene06007:CDS | 50.0% | |
| GAAAGCGGCTACATCACCAA+CGG | + | chr4.1:5351967-5351986 | None:intergenic | 50.0% | |
| GCTGCTGTGAAACTTGGAGA+TGG | - | chr4.1:5351364-5351383 | MS.gene06007:intron | 50.0% | |
| GGACCAAATCAGCAGAAGCA+TGG | + | chr4.1:5352734-5352753 | None:intergenic | 50.0% | |
| GTTCTCTCAAACAGACTCGC+AGG | + | chr4.1:5348899-5348918 | None:intergenic | 50.0% | |
| ! | GCACCATGCTTCTGCTGATT+TGG | - | chr4.1:5352728-5352747 | MS.gene06007:intron | 50.0% |
| ! | TGTAGCCGCTTTCCCTTTGA+AGG | - | chr4.1:5351974-5351993 | MS.gene06007:intron | 50.0% |
| !! | AGACGTGCTGGCTTCTTATC+CGG | + | chr4.1:5348627-5348646 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGCTGTGAAACT+TGG | - | chr4.1:5351358-5351377 | MS.gene06007:intron | 50.0% |
| !! | TGATGCGCTGGTTTCATCGT+TGG | - | chr4.1:5349698-5349717 | MS.gene06007:CDS | 50.0% |
| AGGAGGCCCTAGACATTGCT+CGG | - | chr4.1:5353116-5353135 | MS.gene06007:CDS | 55.0% | |
| AGGTATGTGATCGTTGGCGG+AGG | - | chr4.1:5348371-5348390 | MS.gene06007:intron | 55.0% | |
| ATTGGAGCGAAGCCTGCTGT+GGG | - | chr4.1:5351586-5351605 | MS.gene06007:CDS | 55.0% | |
| CCGGGAGTTAAACCCATGCA+TGG | - | chr4.1:5350685-5350704 | MS.gene06007:intron | 55.0% | |
| CGGAGTTTGCCTTTCTCCAC+CGG | + | chr4.1:5348792-5348811 | None:intergenic | 55.0% | |
| CGGCGGGAACAAGTAAGCTT+TGG | + | chr4.1:5348607-5348626 | None:intergenic | 55.0% | |
| CGGTGGAGAAAGGCAAACTC+CGG | - | chr4.1:5348790-5348809 | MS.gene06007:intron | 55.0% | |
| CTACGGGATGTACAGCCTCA+AGG | - | chr4.1:5349525-5349544 | MS.gene06007:intron | 55.0% | |
| CTGTTCCGGACAAGCATTCC+TGG | - | chr4.1:5351933-5351952 | MS.gene06007:intron | 55.0% | |
| GAGAAAGGCAAACTCCGGAG+TGG | - | chr4.1:5348795-5348814 | MS.gene06007:intron | 55.0% | |
| GGCTGTCTTCTGGCAAGTTC+AGG | + | chr4.1:5353055-5353074 | None:intergenic | 55.0% | |
| GTCTTCTGGCAAGTTCAGGC+AGG | + | chr4.1:5353051-5353070 | None:intergenic | 55.0% | |
| GTGTTGGATCCGGTGGAGAA+AGG | - | chr4.1:5348780-5348799 | MS.gene06007:intron | 55.0% | |
| TGGTATACAGGTGAGGCCAG+TGG | - | chr4.1:5351645-5351664 | MS.gene06007:intron | 55.0% | |
| TGTTGAAAGTGGGAGCCCTG+AGG | - | chr4.1:5352807-5352826 | MS.gene06007:intron | 55.0% | |
| TGTTGCAGATGCTGATGCGC+TGG | - | chr4.1:5349686-5349705 | MS.gene06007:CDS | 55.0% | |
| TTGCTGCTGCAGCTGTTGCT+TGG | - | chr4.1:5350124-5350143 | MS.gene06007:intron | 55.0% | |
| ! | TGCTGTGGGTCCCTTTGAGA+GGG | - | chr4.1:5351600-5351619 | MS.gene06007:CDS | 55.0% |
| CATTGGAGCGAAGCCTGCTG+TGG | - | chr4.1:5351585-5351604 | MS.gene06007:CDS | 60.0% | |
| CTCTCAAAGGGACCCACAGC+AGG | + | chr4.1:5351601-5351620 | None:intergenic | 60.0% | |
| CTGCTGTGGGTCCCTTTGAG+AGG | - | chr4.1:5351599-5351618 | MS.gene06007:CDS | 60.0% | |
| GATCGTTGGCGGAGGAAACG+CGG | - | chr4.1:5348379-5348398 | MS.gene06007:intron | 60.0% | |
| GCTCGCACTTTCGTCGAGCA+TGG | - | chr4.1:5348413-5348432 | MS.gene06007:intron | 60.0% | |
| GGAGGCCCTAGACATTGCTC+GGG | - | chr4.1:5353117-5353136 | MS.gene06007:CDS | 60.0% | |
| ! | GTGGGTCCCTTTGAGAGGGT+GGG | - | chr4.1:5351604-5351623 | MS.gene06007:CDS | 60.0% |
| ! | TGTGGGTCCCTTTGAGAGGG+TGG | - | chr4.1:5351603-5351622 | MS.gene06007:CDS | 60.0% |
| !! | CGTGCTGGCTTCTTATCCGG+CGG | + | chr4.1:5348624-5348643 | None:intergenic | 60.0% |
| !! | GTGCTGGCTTCTTATCCGGC+GGG | + | chr4.1:5348623-5348642 | None:intergenic | 60.0% |
| ! | GTCTAGGGCCTCCTCCACTG+AGG | + | chr4.1:5353110-5353129 | None:intergenic | 65.0% |
| CGTTGGCGGAGGAAACGCGG+CGG | - | chr4.1:5348382-5348401 | MS.gene06007:intron | 70.0% | |
| GTCGAGCATGGCGTCGCCGA+TGG | - | chr4.1:5348425-5348444 | MS.gene06007:intron | 70.0% | |
| GTTGGCGGAGGAAACGCGGC+GGG | - | chr4.1:5348383-5348402 | MS.gene06007:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 5348136 | 5353162 | 5348136 | ID=MS.gene06007 |
| chr4.1 | mRNA | 5348136 | 5353162 | 5348136 | ID=MS.gene06007.t1;Parent=MS.gene06007 |
| chr4.1 | exon | 5353002 | 5353162 | 5353002 | ID=MS.gene06007.t1.exon1;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5353002 | 5353162 | 5353002 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5352826 | 5352925 | 5352826 | ID=MS.gene06007.t1.exon2;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5352826 | 5352925 | 5352826 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5352648 | 5352725 | 5352648 | ID=MS.gene06007.t1.exon3;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5352648 | 5352725 | 5352648 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5352460 | 5352531 | 5352460 | ID=MS.gene06007.t1.exon4;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5352460 | 5352531 | 5352460 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5351752 | 5351870 | 5351752 | ID=MS.gene06007.t1.exon5;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5351752 | 5351870 | 5351752 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5351579 | 5351663 | 5351579 | ID=MS.gene06007.t1.exon6;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5351579 | 5351663 | 5351579 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5351137 | 5351226 | 5351137 | ID=MS.gene06007.t1.exon7;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5351137 | 5351226 | 5351137 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5350363 | 5350464 | 5350363 | ID=MS.gene06007.t1.exon8;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5350363 | 5350464 | 5350363 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5349890 | 5349985 | 5349890 | ID=MS.gene06007.t1.exon9;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5349890 | 5349985 | 5349890 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5349644 | 5349724 | 5349644 | ID=MS.gene06007.t1.exon10;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5349644 | 5349724 | 5349644 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5349303 | 5349374 | 5349303 | ID=MS.gene06007.t1.exon11;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5349303 | 5349374 | 5349303 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5349073 | 5349167 | 5349073 | ID=MS.gene06007.t1.exon12;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5349073 | 5349167 | 5349073 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5348895 | 5348983 | 5348895 | ID=MS.gene06007.t1.exon13;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5348895 | 5348983 | 5348895 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5348682 | 5348744 | 5348682 | ID=MS.gene06007.t1.exon14;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5348682 | 5348744 | 5348682 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5348470 | 5348510 | 5348470 | ID=MS.gene06007.t1.exon15;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5348470 | 5348510 | 5348470 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| chr4.1 | exon | 5348136 | 5348261 | 5348136 | ID=MS.gene06007.t1.exon16;Parent=MS.gene06007.t1 |
| chr4.1 | CDS | 5348136 | 5348261 | 5348136 | ID=cds.MS.gene06007.t1;Parent=MS.gene06007.t1 |
| Gene Sequence |
| Protein sequence |
