AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55783

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55783.t1 MTR_8g099320 98.135 429 8 0 23 451 25 453 0.0 858
MS.gene55783.t1 MTR_4g055610 49.173 423 214 1 23 445 38 459 2.07e-147 428
MS.gene55783.t1 MTR_1g492640 46.224 437 225 4 20 448 47 481 1.74e-132 391
MS.gene55783.t1 MTR_1g492640 44.729 351 191 3 99 448 1 349 9.13e-100 302
MS.gene55783.t1 MTR_1g492640 46.562 320 161 4 20 331 47 364 1.11e-92 285
MS.gene55783.t1 MTR_1g492640 46.562 320 161 4 20 331 29 346 1.18e-92 285
MS.gene55783.t1 MTR_1g070470 32.710 428 271 6 24 445 21 437 7.24e-71 231
MS.gene55783.t1 MTR_4g033275 97.826 92 2 0 323 414 7 98 4.27e-59 189
MS.gene55783.t1 MTR_6g022790 28.477 453 298 10 5 446 18 455 2.96e-56 193
MS.gene55783.t1 MTR_4g055637 46.535 202 100 3 244 445 182 375 5.84e-55 187
MS.gene55783.t1 MTR_2g101920 28.472 432 288 8 21 445 43 460 2.04e-52 183
MS.gene55783.t1 MTR_7g038910 28.904 429 283 9 25 446 30 443 2.89e-48 171
MS.gene55783.t1 MTR_1g492640 46.907 194 94 3 20 205 29 221 2.96e-48 166
MS.gene55783.t1 MTR_1g492640 46.907 194 94 3 20 205 47 239 3.45e-48 167
MS.gene55783.t1 MTR_6g022780 28.868 433 287 8 21 446 10 428 2.81e-47 168
MS.gene55783.t1 MTR_6g023075 27.854 438 295 8 16 446 5 428 1.11e-45 164
MS.gene55783.t1 MTR_8g080120 26.545 437 291 9 21 446 19 436 1.36e-45 164
MS.gene55783.t1 MTR_7g038910 29.513 349 224 9 25 366 30 363 2.77e-43 157
MS.gene55783.t1 MTR_2g096830 28.176 433 290 8 21 446 10 428 2.38e-42 155
MS.gene55783.t1 MTR_7g038910 29.446 343 220 9 25 360 30 357 2.44e-42 154
MS.gene55783.t1 MTR_6g023065 27.416 445 297 11 13 446 34 463 2.86e-42 155
MS.gene55783.t1 MTR_4g103890 26.977 430 286 9 25 444 10 421 7.98e-40 148
MS.gene55783.t1 MTR_4g104510 28.934 394 257 12 56 445 71 445 1.23e-39 148
MS.gene55783.t1 MTR_3g069960 29.301 372 227 11 87 445 32 380 2.34e-39 146
MS.gene55783.t1 MTR_4g104510 28.788 396 257 12 56 445 71 447 3.16e-39 147
MS.gene55783.t1 MTR_5g081630 28.571 399 254 10 56 445 4 380 4.64e-39 145
MS.gene55783.t1 MTR_3g069960 29.301 372 227 11 87 445 85 433 5.55e-39 146
MS.gene55783.t1 MTR_3g005740 26.077 441 298 10 18 446 45 469 6.82e-39 146
MS.gene55783.t1 MTR_1g093020 28.345 441 268 12 25 445 24 436 7.34e-38 143
MS.gene55783.t1 MTR_3g085820 28.531 354 231 9 21 367 29 367 1.60e-37 141
MS.gene55783.t1 MTR_1g093020 29.353 402 250 10 25 413 24 404 5.16e-37 140
MS.gene55783.t1 MTR_5g054730 28.222 450 277 13 15 445 16 438 2.77e-36 139
MS.gene55783.t1 MTR_3g115090 27.387 398 263 11 31 413 90 476 1.44e-35 138
MS.gene55783.t1 MTR_2g096830 27.378 347 231 8 21 360 10 342 1.89e-34 132
MS.gene55783.t1 MTR_1g093030 27.945 433 272 12 29 445 28 436 2.19e-34 133
MS.gene55783.t1 MTR_1g106000 25.427 468 297 13 24 448 14 472 6.65e-34 132
MS.gene55783.t1 MTR_1g105980 25.926 459 297 13 24 448 21 470 7.58e-34 132
MS.gene55783.t1 MTR_0531s0020 29.630 297 192 6 27 317 51 336 1.52e-33 129
MS.gene55783.t1 MTR_3g096800 27.273 451 282 16 31 448 39 476 2.15e-32 129
MS.gene55783.t1 MTR_3g088455 28.635 447 280 15 31 447 40 477 7.97e-31 124
MS.gene55783.t1 MTR_1g105995 25.708 459 296 15 23 446 19 467 9.64e-31 124
MS.gene55783.t1 MTR_3g088475 28.348 448 281 15 31 447 40 478 4.48e-30 122
MS.gene55783.t1 MTR_3g096830 25.995 427 281 11 16 416 17 434 1.61e-29 120
MS.gene55783.t1 MTR_1g029750 26.291 426 277 12 24 419 34 452 2.56e-29 120
MS.gene55783.t1 MTR_1g105990 25.463 432 279 12 24 420 20 443 8.50e-29 118
MS.gene55783.t1 MTR_3g110660 25.053 475 302 16 20 448 15 481 3.96e-28 116
MS.gene55783.t1 MTR_5g023260 24.648 426 287 12 8 413 88 499 7.10e-28 116
MS.gene55783.t1 MTR_2g012470 26.667 435 281 14 32 446 102 518 1.30e-27 115
MS.gene55783.t1 MTR_4g073520 24.516 465 300 16 24 448 58 511 5.81e-27 113
MS.gene55783.t1 MTR_4g073520 24.516 465 300 16 24 448 58 511 7.43e-27 113
MS.gene55783.t1 MTR_5g023240 24.893 466 314 14 2 448 64 512 9.19e-26 110
MS.gene55783.t1 MTR_1g007240 24.609 447 296 13 31 446 18 454 9.72e-26 109
MS.gene55783.t1 MTR_4g075750 24.711 433 294 11 33 443 78 500 1.11e-25 109
MS.gene55783.t1 MTR_3g096840 24.499 449 291 15 31 445 45 479 3.56e-25 108
MS.gene55783.t1 MTR_8g094290 24.609 447 299 13 31 448 37 474 4.67e-25 107
MS.gene55783.t1 MTR_1g007380 25.219 456 298 16 27 448 25 471 1.15e-24 106
MS.gene55783.t1 MTR_1g007270 24.505 404 273 9 31 410 39 434 5.41e-24 104
MS.gene55783.t1 MTR_3g069960 28.870 239 143 7 87 316 85 305 7.86e-23 99.4
MS.gene55783.t1 MTR_3g110430 25.971 412 264 9 31 411 67 468 1.13e-22 100
MS.gene55783.t1 MTR_5g096840 26.415 424 267 14 22 412 26 437 2.75e-22 99.4
MS.gene55783.t1 MTR_3g461440 25.641 390 255 13 36 397 34 416 5.82e-21 95.5
MS.gene55783.t1 MTR_1g007180 23.094 446 302 12 31 445 18 453 1.51e-20 94.0
MS.gene55783.t1 MTR_3g461430 25.635 394 260 12 36 402 41 428 4.33e-20 93.2
MS.gene55783.t1 MTR_3g110420 23.094 459 311 11 16 445 22 467 6.41e-20 92.4
MS.gene55783.t1 MTR_3g061390 26.376 436 267 18 36 432 34 454 9.85e-20 91.7
MS.gene55783.t1 MTR_3g461470 24.942 429 282 15 36 432 34 454 4.92e-19 89.7
MS.gene55783.t1 MTR_2g031750 23.111 450 297 14 31 445 18 453 2.51e-18 87.4
MS.gene55783.t1 MTR_5g096850 23.250 400 263 10 31 397 31 419 3.35e-17 84.0
MS.gene55783.t1 MTR_3g110660 24.924 329 209 11 20 317 15 336 3.80e-15 77.4
MS.gene55783.t1 MTR_1g007180 24.510 306 199 9 163 445 73 369 3.24e-14 74.3
MS.gene55783.t1 MTR_3g088465 26.006 323 215 11 31 337 40 354 6.77e-14 73.6
MS.gene55783.t1 MTR_4g415390 24.887 442 276 16 31 445 49 461 2.43e-13 72.0
MS.gene55783.t1 MTR_5g082220 24.945 453 268 22 31 445 42 460 1.29e-12 70.1
MS.gene55783.t1 MTR_5g082220 24.945 453 268 22 31 445 32 450 1.46e-12 69.7
MS.gene55783.t1 MTR_3g072870 24.558 452 279 16 27 445 32 454 6.03e-12 67.8
MS.gene55783.t1 MTR_4g073770 24.078 461 262 20 31 445 39 457 8.03e-12 67.4
MS.gene55783.t1 MTR_2g031750 24.194 310 195 11 163 445 90 386 3.26e-11 65.1
MS.gene55783.t1 MTR_4g415390 24.611 386 253 12 31 406 49 406 3.65e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55783.t1 AT5G41800 80.653 429 83 0 23 451 24 452 0.0 721
MS.gene55783.t1 AT1G08230 45.047 424 232 1 23 445 25 448 3.83e-134 394
MS.gene55783.t1 AT1G08230 43.391 348 196 1 99 445 1 348 8.28e-101 305
MS.gene55783.t1 AT1G08230 43.902 328 183 1 119 445 2 329 6.98e-98 297
MS.gene55783.t1 AT1G08230 43.902 328 183 1 119 445 2 329 6.98e-98 297
MS.gene55783.t1 AT1G08230 43.902 328 183 1 119 445 2 329 6.98e-98 297
MS.gene55783.t1 AT5G40780 27.233 459 302 11 2 446 6 446 2.20e-51 180
MS.gene55783.t1 AT1G48640 27.391 460 300 12 2 446 13 453 9.10e-45 162
MS.gene55783.t1 AT1G24400 27.816 435 288 10 21 446 24 441 3.14e-44 160
MS.gene55783.t1 AT5G40780 27.885 416 272 10 41 446 1 398 4.47e-44 159
MS.gene55783.t1 AT5G40780 27.885 416 272 10 41 446 1 398 4.47e-44 159
MS.gene55783.t1 AT2G39890 28.904 429 275 10 26 445 32 439 5.19e-44 160
MS.gene55783.t1 AT2G39890 28.904 429 275 10 26 445 32 439 5.19e-44 160
MS.gene55783.t1 AT1G67640 28.406 433 288 9 21 446 24 441 2.09e-42 155
MS.gene55783.t1 AT2G39890 29.188 394 258 8 56 445 4 380 2.49e-42 154
MS.gene55783.t1 AT3G55740 28.904 429 275 10 26 445 29 436 6.91e-42 154
MS.gene55783.t1 AT2G36590 28.802 434 269 11 26 445 26 433 6.22e-41 151
MS.gene55783.t1 AT3G55740 29.188 394 258 8 56 445 4 380 3.62e-40 148
MS.gene55783.t1 AT3G55740 29.188 394 258 8 56 445 4 380 3.62e-40 148
MS.gene55783.t1 AT1G61270 27.363 402 268 10 21 413 29 415 1.64e-38 145
MS.gene55783.t1 AT1G25530 29.062 437 284 12 18 445 20 439 6.45e-36 138
MS.gene55783.t1 AT1G71680 27.021 433 295 9 21 446 30 448 7.44e-36 138
MS.gene55783.t1 AT3G01760 25.622 402 276 8 21 413 27 414 3.75e-33 130
MS.gene55783.t1 AT1G71680 27.378 347 231 9 21 360 30 362 1.18e-29 119
MS.gene55783.t1 AT1G10010 25.829 422 276 10 27 418 30 444 1.26e-27 115
MS.gene55783.t1 AT1G10010 25.829 422 276 10 27 418 29 443 1.31e-27 115
MS.gene55783.t1 AT1G44100 25.435 460 288 16 31 448 33 479 3.37e-27 114
MS.gene55783.t1 AT5G09220 25.167 449 296 13 31 447 51 491 1.33e-26 112
MS.gene55783.t1 AT2G36590 28.808 302 182 8 26 316 26 305 1.66e-26 109
MS.gene55783.t1 AT5G49630 25.000 456 298 13 27 447 34 480 1.03e-25 109
MS.gene55783.t1 AT5G63850 23.684 456 308 13 24 447 17 464 5.25e-25 107
MS.gene55783.t1 AT1G77380 24.703 421 269 12 31 416 35 442 8.05e-25 107
MS.gene55783.t1 AT1G47670 24.711 433 277 11 32 435 100 512 3.53e-24 105
MS.gene55783.t1 AT1G58360 24.781 456 297 14 27 447 38 482 3.61e-24 105
MS.gene55783.t1 AT5G23810 25.416 421 264 14 12 394 12 420 1.87e-18 87.8
MS.gene55783.t1 AT4G35180 23.235 439 289 13 21 439 53 463 7.31e-17 83.2
MS.gene55783.t1 AT4G35180 24.904 261 178 7 33 283 65 317 2.96e-12 68.2
MS.gene55783.t1 AT2G38120 25.505 396 237 15 31 406 49 406 4.70e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACTCTGCTGCAGTTTC+TGG 0.055926 4.3:-4777660 MS.gene55783:CDS
CAAAATCATCATTGACTTAT+TGG 0.111694 4.3:-4777013 MS.gene55783:CDS
GTTTCTGGGTATTGGGTATT+TGG 0.176881 4.3:-4777645 MS.gene55783:CDS
CACTATCAAACAGCTTAAAT+TGG 0.193422 4.3:+4776904 None:intergenic
CAATAAGTCAATGATGATTT+TGG 0.212437 4.3:+4777014 None:intergenic
TTTATCATCTTTCCAGTTGC+AGG 0.255166 4.3:+4777720 None:intergenic
CTGCTGCAGTTTCTGGGTAT+TGG 0.260317 4.3:-4777653 MS.gene55783:CDS
TGTAGCCCAAGCTGAGAAAA+AGG 0.265214 4.3:+4778101 None:intergenic
TGCTGCAGTTTCTGGGTATT+GGG 0.278167 4.3:-4777652 MS.gene55783:CDS
GCCAGATGATGGACCTTCTT+TGG 0.282256 4.3:-4777586 MS.gene55783:CDS
TTGGCTCCAACTTGGGTCCT+TGG 0.286614 4.3:-4777567 MS.gene55783:CDS
GCGAGGAAGAAGATTTCTTT+TGG 0.301221 4.3:+4777190 None:intergenic
TGCTGTTGGTTTCATTCCTC+TGG 0.308064 4.3:-4777081 MS.gene55783:CDS
GCAACTGGAAAGATGATAAA+AGG 0.310014 4.3:-4777717 MS.gene55783:CDS
CCGTACGCATTCAGAGGATT+AGG 0.313937 4.3:-4780344 MS.gene55783:CDS
TCAAGTTGCTTATGAGATAA+TGG 0.316818 4.3:-4777249 MS.gene55783:CDS
ACCTTCTTTGGCTCCAACTT+GGG 0.338327 4.3:-4777574 MS.gene55783:CDS
ATCAAGAACTAATTTCCTTA+TGG 0.340524 4.3:+4776932 None:intergenic
GGCTACACCTTCCTTGTAGT+TGG 0.342809 4.3:-4778085 MS.gene55783:CDS
TGCTCCATGTGGTGCAATAT+TGG 0.345478 4.3:+4778222 None:intergenic
CGAGTTCTCGGAAACGGATA+TGG 0.345658 4.3:+4780216 None:intergenic
GAACTCGCCGCCGATGTCTT+AGG 0.352198 4.3:-4780200 MS.gene55783:intron
TCTACTCTGCTGCAGTTTCT+GGG 0.376927 4.3:-4777659 MS.gene55783:CDS
CATTTAACAACGGCGATTGT+AGG 0.384219 4.3:-4780386 MS.gene55783:CDS
TATGTGTTATGCTGTAATTT+TGG 0.385650 4.3:-4777688 MS.gene55783:CDS
GACCTTCTTTGGCTCCAACT+TGG 0.385739 4.3:-4777575 MS.gene55783:CDS
CGCCGGTATTGATTGCCGTT+TGG 0.387244 4.3:+4779512 None:intergenic
CTTCTTCAACTCTTCGCAAT+CGG 0.392514 4.3:-4777525 MS.gene55783:CDS
AATTGCTGCAATTATGGAAA+TGG 0.392812 4.3:+4777877 None:intergenic
CATGAGGCAGTAAGAGTAGA+AGG 0.394794 4.3:+4780277 None:intergenic
GTAGGGGCAATCCTGCTTGC+TGG 0.394857 4.3:-4779484 MS.gene55783:CDS
TGGTGATTCTGATTCTCCTT+AGG 0.405695 4.3:+4780596 None:intergenic
TGTAAAGTGTTCGAAGAATC+AGG 0.407219 4.3:+4777168 None:intergenic
TTGGATCAACATTTCAATCA+TGG 0.409998 4.3:-4776994 MS.gene55783:CDS
ACTCTAGCACCTCCTGCAAC+TGG 0.420616 4.3:-4777732 MS.gene55783:CDS
CGGCGTCATCTTCATCTTGA+GGG 0.427559 4.3:+4780573 None:intergenic
AGACATCGGCGGCGAGTTCT+CGG 0.429362 4.3:+4780204 None:intergenic
ATGTTATGCCTAACAGTTAT+GGG 0.431198 4.3:-4780308 MS.gene55783:CDS
CGTACGCATTCAGAGGATTA+GGG 0.431714 4.3:-4780343 MS.gene55783:CDS
CATCAAACTCTTCAAAATGT+TGG 0.435510 4.3:+4777608 None:intergenic
TCAACTCTTCGCAATCGGTT+TGG 0.438376 4.3:-4777520 MS.gene55783:intron
TCAATCATGGTGGCATTCAC+TGG 0.438826 4.3:-4776981 MS.gene55783:CDS
AAAATGGTTACTTGTATCTC+AGG 0.442563 4.3:+4777836 None:intergenic
TGAGATAATGGAGAAGAAAT+CGG 0.444629 4.3:-4777237 MS.gene55783:CDS
ATCCAAACGGCAATCAATAC+CGG 0.447790 4.3:-4779514 MS.gene55783:CDS
CTCCTTAGGTGGGTTTGCCA+TGG 0.450574 4.3:+4780610 None:intergenic
ACTCTTCAAAATGTTGGAGT+TGG 0.450754 4.3:+4777614 None:intergenic
AAGACCCTTGAGGATTCCTT+AGG 0.451852 4.3:+4777914 None:intergenic
AATGTTATGCCTAACAGTTA+TGG 0.453009 4.3:-4780309 MS.gene55783:CDS
GCCAAAGAAGGTCCATCATC+TGG 0.458042 4.3:+4777585 None:intergenic
TTACAGCATAACACATAGTA+AGG 0.461900 4.3:+4777694 None:intergenic
TCAATACCGGCGTTGGCGTA+GGG 0.464596 4.3:-4779501 MS.gene55783:CDS
GGACTATTCCTTGGAACCTA+AGG 0.470002 4.3:-4777930 MS.gene55783:CDS
ATTCACTGGTGCAGGAATCA+TGG 0.473389 4.3:-4776967 MS.gene55783:CDS
CTGGAGGACGAAAGCAGCTC+CGG 0.474259 4.3:+4780553 None:intergenic
ATTTAACAACGGCGATTGTA+GGG 0.474479 4.3:-4780385 MS.gene55783:CDS
TGATTCTGATTCTCCTTAGG+TGG 0.479279 4.3:+4780599 None:intergenic
AAGAGTTTGATGCCAGATGA+TGG 0.482621 4.3:-4777597 MS.gene55783:CDS
GCTTGCTGGTCAATGCCTCC+AGG 0.485762 4.3:-4779470 MS.gene55783:intron
GATTCTGATTCTCCTTAGGT+GGG 0.485762 4.3:+4780600 None:intergenic
CTTGATCATTGCGAAAATGC+CGG 0.487042 4.3:-4780245 MS.gene55783:CDS
TGGGTGCATTCTCGTCCATA+AGG 0.489029 4.3:-4776947 MS.gene55783:CDS
AATGGCGTGGTTGGTGCTGT+TGG 0.491300 4.3:-4777095 MS.gene55783:CDS
TTACAAGACCCATAACTGTT+AGG 0.492363 4.3:+4780300 None:intergenic
AGTTGATGTGTCGTAGGGAA+TGG 0.492712 4.3:+4778131 None:intergenic
ATGGTGGCATTCACTGGTGC+AGG 0.497413 4.3:-4776975 MS.gene55783:CDS
CCGGCGTCATCTTCATCTTG+AGG 0.503188 4.3:+4780572 None:intergenic
CCCTCCAAGGGACTATTCCT+TGG 0.507686 4.3:-4777939 MS.gene55783:CDS
TGAGGATTCCTTAGGTTCCA+AGG 0.508139 4.3:+4777922 None:intergenic
ATCAATACCGGCGTTGGCGT+AGG 0.512369 4.3:-4779502 MS.gene55783:CDS
CATTGATGACAGGGTCGGGT+TGG 0.517341 4.3:-4779558 MS.gene55783:intron
GAAACGGATATGGCGGCGAC+CGG 0.520639 4.3:+4780226 None:intergenic
TTCACTGGTGCAGGAATCAT+GGG 0.520800 4.3:-4776966 MS.gene55783:CDS
CATTCAGAGGATTAGGGTGG+GGG 0.524963 4.3:-4780337 MS.gene55783:CDS
TGTTGTATAAAATCATAGGC+AGG 0.525971 4.3:+4777051 None:intergenic
GTGTCGTAGGGAATGGAAAG+TGG 0.532912 4.3:+4778138 None:intergenic
GGTTCCAAGGAATAGTCCCT+TGG 0.544138 4.3:+4777935 None:intergenic
TGTCGTAGGGAATGGAAAGT+GGG 0.547788 4.3:+4778139 None:intergenic
TACGGCAGCGTTAGTATCGT+TGG 0.548155 4.3:+4780362 None:intergenic
ACCCAAGTTGGAGCCAAAGA+AGG 0.550451 4.3:+4777573 None:intergenic
TGCCATGGCAAACCCACCTA+AGG 0.551622 4.3:-4780612 MS.gene55783:CDS
CGGCGGCGAGTTCTCGGAAA+CGG 0.551808 4.3:+4780210 None:intergenic
GCGAGTCCAAGGACCCAAGT+TGG 0.554753 4.3:+4777561 None:intergenic
GGAGACATCAATGGCGTGGT+TGG 0.554958 4.3:-4777104 MS.gene55783:CDS
GCATTCAGAGGATTAGGGTG+GGG 0.556854 4.3:-4780338 MS.gene55783:CDS
GTTGGTGCTTGTATTCATGC+AGG 0.557410 4.3:-4778067 MS.gene55783:intron
TCCAAGGAATAGTCCCTTGG+AGG 0.563185 4.3:+4777938 None:intergenic
ACGGCAATCAATACCGGCGT+TGG 0.565368 4.3:-4779508 MS.gene55783:CDS
CGCATTCAGAGGATTAGGGT+GGG 0.565491 4.3:-4780339 MS.gene55783:CDS
ATCATCTTTCCAGTTGCAGG+AGG 0.565721 4.3:+4777723 None:intergenic
GGAGGCATTGACCAGCAAGC+AGG 0.567407 4.3:+4779473 None:intergenic
CAAAGACGATAGCGAGTCCA+AGG 0.572437 4.3:+4777550 None:intergenic
GAATACAAGCACCAACTACA+AGG 0.578514 4.3:+4778074 None:intergenic
GCTGTTTGATAGTGAAGTTG+TGG 0.589328 4.3:-4776895 MS.gene55783:CDS
CCTAATCCTCTGAATGCGTA+CGG 0.589330 4.3:+4780344 None:intergenic
CAATACCGGCGTTGGCGTAG+GGG 0.590022 4.3:-4779500 MS.gene55783:CDS
GATTACATCACCTAAGACAT+CGG 0.591318 4.3:+4780190 None:intergenic
ACGCTGCCGTACGCATTCAG+AGG 0.593272 4.3:-4780350 MS.gene55783:CDS
AATTATGGAAATGGCAGTGA+AGG 0.596045 4.3:+4777886 None:intergenic
CCAAGGAATAGTCCCTTGGA+GGG 0.596394 4.3:+4777939 None:intergenic
AATTGATTGATATAGGTGAA+TGG 0.604073 4.3:-4780424 MS.gene55783:intron
TACTCCAATATTGCACCACA+TGG 0.605379 4.3:-4778226 MS.gene55783:CDS
AACACAAGTTGATGTGTCGT+AGG 0.607210 4.3:+4778125 None:intergenic
GATTGCCCCTACGCCAACGC+CGG 0.613136 4.3:+4779495 None:intergenic
AAATCGGCAGATGTGAAGCA+AGG 0.618331 4.3:-4777221 MS.gene55783:CDS
ACACAAGTTGATGTGTCGTA+GGG 0.621227 4.3:+4778126 None:intergenic
ACTGTACGACTTCATAGCAA+TGG 0.624920 4.3:-4778194 MS.gene55783:CDS
ACAAGCACCAACTACAAGGA+AGG 0.626871 4.3:+4778078 None:intergenic
TGGAACCTAAGGAATCCTCA+AGG 0.628374 4.3:-4777919 MS.gene55783:CDS
TATAGGTGAATGGTGGCACG+CGG 0.632366 4.3:-4780414 MS.gene55783:intron
ACGCATTCAGAGGATTAGGG+TGG 0.633907 4.3:-4780340 MS.gene55783:CDS
GCGTGGCTAAACTCATGCCA+TGG 0.638366 4.3:-4780627 None:intergenic
CGTCATCTTCATCTTGAGGG+TGG 0.638459 4.3:+4780576 None:intergenic
TAGGTGAATGGTGGCACGCG+GGG 0.647836 4.3:-4780412 MS.gene55783:CDS
ATAGGTGAATGGTGGCACGC+GGG 0.648320 4.3:-4780413 MS.gene55783:intron
GGAACCTAAGGAATCCTCAA+GGG 0.649619 4.3:-4777918 MS.gene55783:CDS
AATCGGCAGATGTGAAGCAA+GGG 0.649745 4.3:-4777220 MS.gene55783:CDS
GATCAACATTTCAATCATGG+TGG 0.650071 4.3:-4776991 MS.gene55783:CDS
TACAGTTTCAATGCTCCATG+TGG 0.654464 4.3:+4778211 None:intergenic
CAAGGAATAGTCCCTTGGAG+GGG 0.654932 4.3:+4777940 None:intergenic
GATCAAGAACTTTAGACATG+AGG 0.658137 4.3:+4780261 None:intergenic
GTTCTCGGAAACGGATATGG+CGG 0.683221 4.3:+4780219 None:intergenic
CCTCAAGATGAAGATGACGC+CGG 0.694783 4.3:-4780572 MS.gene55783:CDS
GAAGGCACTGAAGACCCTTG+AGG 0.696373 4.3:+4777904 None:intergenic
CGCGGGGTATCATTTAACAA+CGG 0.699944 4.3:-4780396 MS.gene55783:CDS
ATAGGCAGGACAAAATCCAG+AGG 0.715818 4.3:+4777065 None:intergenic
TGATTGATATAGGTGAATGG+TGG 0.718250 4.3:-4780421 MS.gene55783:intron
TACATCACCTAAGACATCGG+CGG 0.726868 4.3:+4780193 None:intergenic
AGTGTTCGAAGAATCAGGCG+AGG 0.728618 4.3:+4777173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTTAATATTGCA+CGG - chr4.3:4778119-4778138 MS.gene55783:CDS 10.0%
!! AATTAAGAACAAAAAAAAAT+CGG + chr4.3:4779106-4779125 None:intergenic 10.0%
!! ACTATTTATCTTATAAAATA+TGG + chr4.3:4777691-4777710 None:intergenic 10.0%
!! GTAAAATTACTAAAAATAAT+TGG + chr4.3:4778067-4778086 None:intergenic 10.0%
!! TAATTATTAATGTTTGAAAA+TGG + chr4.3:4777428-4777447 None:intergenic 10.0%
!! AAAATGTATTCTATAAAAAG+AGG - chr4.3:4778981-4779000 MS.gene55783:intron 15.0%
!! AAATAAATAAGGGTAAAATA+GGG - chr4.3:4778146-4778165 MS.gene55783:CDS 15.0%
!! AAATAATTTCCACAATTATT+TGG - chr4.3:4777611-4777630 MS.gene55783:CDS 15.0%
!! AATTATTTCAATTTAGAAAG+AGG + chr4.3:4779695-4779714 None:intergenic 15.0%
!! GACAAATATGTAAAATAAAT+AGG - chr4.3:4778927-4778946 MS.gene55783:intron 15.0%
!! TAAATAAATAAGGGTAAAAT+AGG - chr4.3:4778145-4778164 MS.gene55783:CDS 15.0%
!! TAATATTTCAATTTGTGATT+TGG - chr4.3:4779235-4779254 MS.gene55783:intron 15.0%
!! TCATTATGAATTAATTGTAT+AGG - chr4.3:4779746-4779765 MS.gene55783:intron 15.0%
!! TTGTTCTTAATTAGTAATAT+AGG - chr4.3:4779114-4779133 MS.gene55783:intron 15.0%
!!! ATCAATAATTGTTTTTTTAG+AGG - chr4.3:4777509-4777528 MS.gene55783:intron 15.0%
!!! ATTTAAGATTTTCTATATTC+AGG - chr4.3:4777397-4777416 MS.gene55783:intron 15.0%
!!! ATTTAGAATGTTAAAATACT+TGG - chr4.3:4779190-4779209 MS.gene55783:intron 15.0%
!!! TAAACAAAAAACAACTTTTT+AGG - chr4.3:4778679-4778698 MS.gene55783:intron 15.0%
!!! TATGAATTATGATAACTTTT+AGG - chr4.3:4778584-4778603 MS.gene55783:intron 15.0%
!!! TGAATTTTCTTAAATTTTGT+TGG - chr4.3:4777919-4777938 MS.gene55783:CDS 15.0%
!!! TTTAGTCTTATCATATTTAT+AGG - chr4.3:4780224-4780243 MS.gene55783:CDS 15.0%
!! AAAGTTATCATAATTCATAC+AGG + chr4.3:4778583-4778602 None:intergenic 20.0%
!! AATAAATAAGGGTAAAATAG+GGG - chr4.3:4778147-4778166 MS.gene55783:CDS 20.0%
!! ACAATTAATTCATAATGACA+TGG + chr4.3:4779744-4779763 None:intergenic 20.0%
!! AGATATGAATTGATTGATAT+AGG - chr4.3:4777072-4777091 MS.gene55783:CDS 20.0%
!! ATTAGATTACCAAATAATTG+TGG + chr4.3:4777623-4777642 None:intergenic 20.0%
!! ATTCAATACTAGTATGAAAT+AGG - chr4.3:4778499-4778518 MS.gene55783:intron 20.0%
!! CATTGAATATTTGATGTATT+TGG + chr4.3:4778742-4778761 None:intergenic 20.0%
!! TATCTTGTAGTAATAAAACT+TGG + chr4.3:4777785-4777804 None:intergenic 20.0%
!! TCAAGATAATTAAGAAAAAC+TGG - chr4.3:4778846-4778865 MS.gene55783:intron 20.0%
!! TGTAACATAAATGTAATCAA+GGG + chr4.3:4779494-4779513 None:intergenic 20.0%
!! TTGTAACATAAATGTAATCA+AGG + chr4.3:4779495-4779514 None:intergenic 20.0%
!!! AAACAATTATTGATTGATAG+AGG + chr4.3:4777503-4777522 None:intergenic 20.0%
!!! AGTTTTATTACTACAAGATA+TGG - chr4.3:4777785-4777804 MS.gene55783:intron 20.0%
!!! GACTTTAATTTCAATTTGTA+CGG + chr4.3:4777472-4777491 None:intergenic 20.0%
!!! GTTTTGTTGTATAAAATCAT+AGG + chr4.3:4780459-4780478 None:intergenic 20.0%
!!! TATTTTAGAACCATTATTTG+TGG + chr4.3:4778640-4778659 None:intergenic 20.0%
!!! TCTAGTATTTTTCTTGTATA+TGG + chr4.3:4778244-4778263 None:intergenic 20.0%
!!! TTCTTTTCTAATTCTTTTTC+TGG - chr4.3:4777373-4777392 MS.gene55783:intron 20.0%
!!! TTTTGTAATCTTTATCCAAA+CGG - chr4.3:4777976-4777995 MS.gene55783:intron 20.0%
!!! TTTTTGTTTATAAATGTGAC+CGG + chr4.3:4778669-4778688 None:intergenic 20.0%
!!! TTTTTTTCTGCTTTTTTTGA+GGG - chr4.3:4778328-4778347 MS.gene55783:intron 20.0%
!!! TTTTTTTTCTGCTTTTTTTG+AGG - chr4.3:4778327-4778346 MS.gene55783:intron 20.0%
! AATCTAGCAATATATTTGTC+TGG + chr4.3:4779719-4779738 None:intergenic 25.0%
! AATTGATTGATATAGGTGAA+TGG - chr4.3:4777079-4777098 MS.gene55783:CDS 25.0%
! AATTTAGAAAGAGGACAAAA+TGG + chr4.3:4779686-4779705 None:intergenic 25.0%
! ACAAATATAAGGGATTGAAT+TGG - chr4.3:4780019-4780038 MS.gene55783:intron 25.0%
! ATCAAGAACTAATTTCCTTA+TGG + chr4.3:4780574-4780593 None:intergenic 25.0%
! GCACGGATTTAAATAAATAA+GGG - chr4.3:4778136-4778155 MS.gene55783:CDS 25.0%
! GTAACATAAATGTAATCAAG+GGG + chr4.3:4779493-4779512 None:intergenic 25.0%
! TAACATAAATGTAATCAAGG+GGG + chr4.3:4779492-4779511 None:intergenic 25.0%
! TAATTACAAGTTTGTAATCG+CGG + chr4.3:4780057-4780076 None:intergenic 25.0%
! TACTGTAATTGTTGATATTG+CGG - chr4.3:4780077-4780096 MS.gene55783:intron 25.0%
! TATATTCTCTCCACAAATAA+TGG - chr4.3:4778627-4778646 MS.gene55783:intron 25.0%
! TGAGTAATAAGTTAGTAACA+AGG - chr4.3:4777857-4777876 MS.gene55783:CDS 25.0%
! TGCACGGATTTAAATAAATA+AGG - chr4.3:4778135-4778154 MS.gene55783:CDS 25.0%
! TTAATTATCTTGATCTAGCA+TGG + chr4.3:4778839-4778858 None:intergenic 25.0%
! TTTATTACTACAAGATATGG+TGG - chr4.3:4777788-4777807 MS.gene55783:intron 25.0%
!! CAATAAGTCAATGATGATTT+TGG + chr4.3:4780492-4780511 None:intergenic 25.0%
!! TATATGGAACTTTTCACATT+TGG - chr4.3:4778542-4778561 MS.gene55783:intron 25.0%
!! TATGTGTTATGCTGTAATTT+TGG - chr4.3:4779815-4779834 MS.gene55783:intron 25.0%
!! TTTCATACTAGTATTGAATG+TGG + chr4.3:4778498-4778517 None:intergenic 25.0%
!! TTTGTACGGTTTTTCTAATT+AGG + chr4.3:4777458-4777477 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr4.3:4778777-4778796 MS.gene55783:intron 25.0%
!!! AAGTGGGGTATTATATTTTT+TGG + chr4.3:4778274-4778293 None:intergenic 25.0%
!!! AGGCAAGAATTTTTTTCTAT+AGG - chr4.3:4779001-4779020 MS.gene55783:intron 25.0%
!!! ATATCATTGATTCTAAGCAT+TGG + chr4.3:4777762-4777781 None:intergenic 25.0%
!!! CAAAATCATCATTGACTTAT+TGG - chr4.3:4780490-4780509 MS.gene55783:intron 25.0%
AAAAAACTAGTTGCTCTCAT+TGG + chr4.3:4778312-4778331 None:intergenic 30.0%
AAAATGGTTACTTGTATCTC+AGG + chr4.3:4779670-4779689 None:intergenic 30.0%
AAATAATTGGAAAGCTAACC+TGG + chr4.3:4778054-4778073 None:intergenic 30.0%
AAATACTTGGCTCAAGAAAA+TGG - chr4.3:4779203-4779222 MS.gene55783:intron 30.0%
AACGCATATCAGATAATGAA+TGG + chr4.3:4777558-4777577 None:intergenic 30.0%
AATGTTATGCCTAACAGTTA+TGG - chr4.3:4777194-4777213 MS.gene55783:CDS 30.0%
AATTGCTGCAATTATGGAAA+TGG + chr4.3:4779629-4779648 None:intergenic 30.0%
AGCTCACAAACACAAATATA+AGG - chr4.3:4780008-4780027 MS.gene55783:intron 30.0%
ATAGAAAAATTGCATGCCTT+TGG + chr4.3:4776977-4776996 None:intergenic 30.0%
ATCGTACAAATCTAGAAATG+CGG + chr4.3:4777898-4777917 None:intergenic 30.0%
ATGTTATGCCTAACAGTTAT+GGG - chr4.3:4777195-4777214 MS.gene55783:CDS 30.0%
CACTATCAAACAGCTTAAAT+TGG + chr4.3:4780602-4780621 None:intergenic 30.0%
CATCAAACTCTTCAAAATGT+TGG + chr4.3:4779898-4779917 None:intergenic 30.0%
GCGATTAAACTTGATATTGT+AGG - chr4.3:4779526-4779545 MS.gene55783:CDS 30.0%
GCTCACAAACACAAATATAA+GGG - chr4.3:4780009-4780028 MS.gene55783:intron 30.0%
TGTTGTATAAAATCATAGGC+AGG + chr4.3:4780455-4780474 None:intergenic 30.0%
TTACAGCATAACACATAGTA+AGG + chr4.3:4779812-4779831 None:intergenic 30.0%
TTGGATCAACATTTCAATCA+TGG - chr4.3:4780509-4780528 MS.gene55783:intron 30.0%
! ACACTTTACATGATTTTCTG+TGG - chr4.3:4780348-4780367 MS.gene55783:CDS 30.0%
! ATACTAGTATTGAATGTGGA+TGG + chr4.3:4778494-4778513 None:intergenic 30.0%
! CCATAATTGCAGCAATTTTT+GGG - chr4.3:4779632-4779651 MS.gene55783:intron 30.0%
! TAAGTCAATGATGATTTTGG+AGG + chr4.3:4780489-4780508 None:intergenic 30.0%
! TCAAGTTGCTTATGAGATAA+TGG - chr4.3:4780254-4780273 MS.gene55783:CDS 30.0%
! TCCATAATTGCAGCAATTTT+TGG - chr4.3:4779631-4779650 MS.gene55783:intron 30.0%
! TGGTTTTCATTCAACATAGA+CGG - chr4.3:4778385-4778404 MS.gene55783:intron 30.0%
!! ATTGTAAAGGCTTTGGAAAT+TGG + chr4.3:4780147-4780166 None:intergenic 30.0%
!! GATTGAATTGGTTTGAACTA+TGG - chr4.3:4780031-4780050 MS.gene55783:intron 30.0%
!! TGAGATAATGGAGAAGAAAT+CGG - chr4.3:4780266-4780285 MS.gene55783:CDS 30.0%
!!! TTTTATTTTGCTTCCGATAG+TGG - chr4.3:4779051-4779070 MS.gene55783:intron 30.0%
AAAGATCAGACATCCACTAT+CGG + chr4.3:4779067-4779086 None:intergenic 35.0%
AATTATGGAAATGGCAGTGA+AGG + chr4.3:4779620-4779639 None:intergenic 35.0%
ACTCTTCAAAATGTTGGAGT+TGG + chr4.3:4779892-4779911 None:intergenic 35.0%
AGTGAGTGACAATCTGAAAA+CGG - chr4.3:4778432-4778451 MS.gene55783:intron 35.0%
ATTTAACAACGGCGATTGTA+GGG - chr4.3:4777118-4777137 MS.gene55783:CDS 35.0%
CATATACACCATAGTGATAG+GGG + chr4.3:4778528-4778547 None:intergenic 35.0%
CCATATACACCATAGTGATA+GGG + chr4.3:4778529-4778548 None:intergenic 35.0%
CCATTGATGTCTCCAAAAAA+CGG + chr4.3:4780393-4780412 None:intergenic 35.0%
CCCAAAAATTGCTGCAATTA+TGG + chr4.3:4779635-4779654 None:intergenic 35.0%
GAGAAGAAACACTCAACAAA+AGG + chr4.3:4777728-4777747 None:intergenic 35.0%
GATCAACATTTCAATCATGG+TGG - chr4.3:4780512-4780531 MS.gene55783:intron 35.0%
GATCAAGAACTTTAGACATG+AGG + chr4.3:4777245-4777264 None:intergenic 35.0%
GATTACATCACCTAAGACAT+CGG + chr4.3:4777316-4777335 None:intergenic 35.0%
GCAACTGGAAAGATGATAAA+AGG - chr4.3:4779786-4779805 MS.gene55783:intron 35.0%
TCCATATACACCATAGTGAT+AGG + chr4.3:4778530-4778549 None:intergenic 35.0%
TGATTGATATAGGTGAATGG+TGG - chr4.3:4777082-4777101 MS.gene55783:CDS 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr4.3:4778665-4778684 None:intergenic 35.0%
TTACAAGACCCATAACTGTT+AGG + chr4.3:4777206-4777225 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr4.3:4778666-4778685 None:intergenic 35.0%
TTTATCATCTTTCCAGTTGC+AGG + chr4.3:4779786-4779805 None:intergenic 35.0%
! AGTGGATGTCTGATCTTTTA+TGG - chr4.3:4779069-4779088 MS.gene55783:intron 35.0%
! GTCTGATCTTTTATGGAACA+GGG - chr4.3:4779076-4779095 MS.gene55783:intron 35.0%
! TCTGATCTTTTATGGAACAG+GGG - chr4.3:4779077-4779096 MS.gene55783:intron 35.0%
! TGTAAAGTGTTCGAAGAATC+AGG + chr4.3:4780338-4780357 None:intergenic 35.0%
! TGTCTGATCTTTTATGGAAC+AGG - chr4.3:4779075-4779094 MS.gene55783:intron 35.0%
!! ATTGCAGCAATTTTTGGGAA+TGG - chr4.3:4779637-4779656 MS.gene55783:intron 35.0%
!! TGTTGGTTTCATTGATGACA+GGG - chr4.3:4777936-4777955 MS.gene55783:CDS 35.0%
!! TTGTTGGTTTCATTGATGAC+AGG - chr4.3:4777935-4777954 MS.gene55783:CDS 35.0%
AAAATTGCATGCCTTTGGAC+TGG + chr4.3:4776972-4776991 None:intergenic 40.0%
AAGAGTTTGATGCCAGATGA+TGG - chr4.3:4779906-4779925 MS.gene55783:intron 40.0%
ACATTGTACAATACTCCCTC+CGG + chr4.3:4778799-4778818 None:intergenic 40.0%
ACTGTACGACTTCATAGCAA+TGG - chr4.3:4779309-4779328 MS.gene55783:intron 40.0%
AGTGTTTCTTCTCTCTCGTA+AGG - chr4.3:4777735-4777754 MS.gene55783:CDS 40.0%
ATCAAAAAATGCCCCTCCAA+GGG - chr4.3:4779552-4779571 MS.gene55783:intron 40.0%
ATCCAAACGGCAATCAATAC+CGG - chr4.3:4777989-4778008 MS.gene55783:intron 40.0%
CAAAGACCGTCACATTGTAA+AGG + chr4.3:4780160-4780179 None:intergenic 40.0%
CACATTTGGTCCACTTTGTT+TGG - chr4.3:4778556-4778575 MS.gene55783:intron 40.0%
CATTTAACAACGGCGATTGT+AGG - chr4.3:4777117-4777136 MS.gene55783:CDS 40.0%
CCAAAGCCTTTACAATGTGA+CGG - chr4.3:4780151-4780170 MS.gene55783:intron 40.0%
CCCTATCACTATGGTGTATA+TGG - chr4.3:4778526-4778545 MS.gene55783:intron 40.0%
CTTCTTCAACTCTTCGCAAT+CGG - chr4.3:4779978-4779997 MS.gene55783:intron 40.0%
CTTGATCATTGCGAAAATGC+CGG - chr4.3:4777258-4777277 MS.gene55783:CDS 40.0%
GAATACAAGCACCAACTACA+AGG + chr4.3:4779432-4779451 None:intergenic 40.0%
GATTCTGATTCTCCTTAGGT+GGG + chr4.3:4776906-4776925 None:intergenic 40.0%
GTAGTTGCTATAAGTCGTAG+AGG - chr4.3:4780118-4780137 MS.gene55783:intron 40.0%
GTCTTTGCAGGTTGCAATTT+AGG - chr4.3:4780173-4780192 MS.gene55783:intron 40.0%
GTGAGTGACAATCTGAAAAC+GGG - chr4.3:4778433-4778452 MS.gene55783:intron 40.0%
TAATTGGAAAGCTAACCTGG+AGG + chr4.3:4778051-4778070 None:intergenic 40.0%
TACAGTTTCAATGCTCCATG+TGG + chr4.3:4779295-4779314 None:intergenic 40.0%
TACTCCAATATTGCACCACA+TGG - chr4.3:4779277-4779296 MS.gene55783:intron 40.0%
TCATACAGGTCCAAACAAAG+TGG + chr4.3:4778569-4778588 None:intergenic 40.0%
TGATTCTGATTCTCCTTAGG+TGG + chr4.3:4776907-4776926 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr4.3:4778781-4778800 MS.gene55783:intron 40.0%
TGCTTGTATTCATGCAGGTA+TGG - chr4.3:4779441-4779460 MS.gene55783:intron 40.0%
TGGTGATTCTGATTCTCCTT+AGG + chr4.3:4776910-4776929 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr4.3:4778780-4778799 MS.gene55783:intron 40.0%
! GCGAGGAAGAAGATTTCTTT+TGG + chr4.3:4780316-4780335 None:intergenic 40.0%
! GTTGTTATTGTAGACACGCA+TGG - chr4.3:4778365-4778384 MS.gene55783:intron 40.0%
! TGTTCCCTTTTTCTCAGCTT+GGG - chr4.3:4779397-4779416 MS.gene55783:intron 40.0%
!! AACACAAGTTGATGTGTCGT+AGG + chr4.3:4779381-4779400 None:intergenic 40.0%
!! ACACAAGTTGATGTGTCGTA+GGG + chr4.3:4779380-4779399 None:intergenic 40.0%
!! CTCATTGGTGTCACTATCAT+GGG + chr4.3:4778297-4778316 None:intergenic 40.0%
!! GCTGTTTGATAGTGAAGTTG+TGG - chr4.3:4780608-4780627 MS.gene55783:CDS 40.0%
!! GTTTCTGGGTATTGGGTATT+TGG - chr4.3:4779858-4779877 MS.gene55783:intron 40.0%
!! TCTCATTGGTGTCACTATCA+TGG + chr4.3:4778298-4778317 None:intergenic 40.0%
!! TGGTTCTAAAATACTCCCTC+CGG - chr4.3:4778647-4778666 MS.gene55783:intron 40.0%
!!! CCGTTTTTTGGAGACATCAA+TGG - chr4.3:4780390-4780409 MS.gene55783:CDS 40.0%
AAATCGGCAGATGTGAAGCA+AGG - chr4.3:4780282-4780301 MS.gene55783:CDS 45.0%
AAGACCCTTGAGGATTCCTT+AGG + chr4.3:4779592-4779611 None:intergenic 45.0%
AATCGGCAGATGTGAAGCAA+GGG - chr4.3:4780283-4780302 MS.gene55783:CDS 45.0%
ACAAGCACCAACTACAAGGA+AGG + chr4.3:4779428-4779447 None:intergenic 45.0%
AGCATGGACAAGCTAACAAG+TGG + chr4.3:4778823-4778842 None:intergenic 45.0%
ATAGGCAGGACAAAATCCAG+AGG + chr4.3:4780441-4780460 None:intergenic 45.0%
ATAGGTGACCCCTATCACTA+TGG - chr4.3:4778517-4778536 MS.gene55783:intron 45.0%
ATCATCTTTCCAGTTGCAGG+AGG + chr4.3:4779783-4779802 None:intergenic 45.0%
ATTCACTGGTGCAGGAATCA+TGG - chr4.3:4780536-4780555 MS.gene55783:intron 45.0%
CATCAAAAAATGCCCCTCCA+AGG - chr4.3:4779551-4779570 MS.gene55783:intron 45.0%
CATGAGGCAGTAAGAGTAGA+AGG + chr4.3:4777229-4777248 None:intergenic 45.0%
CCGTCACATTGTAAAGGCTT+TGG + chr4.3:4780154-4780173 None:intergenic 45.0%
CCTAATCCTCTGAATGCGTA+CGG + chr4.3:4777162-4777181 None:intergenic 45.0%
CGTACGCATTCAGAGGATTA+GGG - chr4.3:4777160-4777179 MS.gene55783:CDS 45.0%
GACAATCTGAAAACGGGTGA+TGG - chr4.3:4778439-4778458 MS.gene55783:intron 45.0%
GGAACCTAAGGAATCCTCAA+GGG - chr4.3:4779585-4779604 MS.gene55783:intron 45.0%
GGACTATTCCTTGGAACCTA+AGG - chr4.3:4779573-4779592 MS.gene55783:intron 45.0%
GTAGCCCAAGCTGAGAAAAA+GGG + chr4.3:4779404-4779423 None:intergenic 45.0%
TACAATGTGACGGTCTTTGC+AGG - chr4.3:4780161-4780180 MS.gene55783:intron 45.0%
TACATCACCTAAGACATCGG+CGG + chr4.3:4777313-4777332 None:intergenic 45.0%
TCAACTCTTCGCAATCGGTT+TGG - chr4.3:4779983-4780002 MS.gene55783:intron 45.0%
TCAATCATGGTGGCATTCAC+TGG - chr4.3:4780522-4780541 MS.gene55783:intron 45.0%
TCTACTCTGCTGCAGTTTCT+GGG - chr4.3:4779844-4779863 MS.gene55783:intron 45.0%
TGAGGATTCCTTAGGTTCCA+AGG + chr4.3:4779584-4779603 None:intergenic 45.0%
TGCTCCATGTGGTGCAATAT+TGG + chr4.3:4779284-4779303 None:intergenic 45.0%
TGGAACCTAAGGAATCCTCA+AGG - chr4.3:4779584-4779603 MS.gene55783:intron 45.0%
TGTAGCCCAAGCTGAGAAAA+AGG + chr4.3:4779405-4779424 None:intergenic 45.0%
TGTCACTATCATGGGAAGTG+GGG + chr4.3:4778289-4778308 None:intergenic 45.0%
TGTCGTAGGGAATGGAAAGT+GGG + chr4.3:4779367-4779386 None:intergenic 45.0%
TTCACTGGTGCAGGAATCAT+GGG - chr4.3:4780537-4780556 MS.gene55783:intron 45.0%
TTCTACTCTGCTGCAGTTTC+TGG - chr4.3:4779843-4779862 MS.gene55783:intron 45.0%
! ACCTTCTTTGGCTCCAACTT+GGG - chr4.3:4779929-4779948 MS.gene55783:intron 45.0%
! AGTTGATGTGTCGTAGGGAA+TGG + chr4.3:4779375-4779394 None:intergenic 45.0%
! CGCGGGGTATCATTTAACAA+CGG - chr4.3:4777107-4777126 MS.gene55783:CDS 45.0%
! GGTTTCATTGATGACAGGGT+CGG - chr4.3:4777940-4777959 MS.gene55783:CDS 45.0%
! GTGTCACTATCATGGGAAGT+GGG + chr4.3:4778290-4778309 None:intergenic 45.0%
! GTGTTCCCTTTTTCTCAGCT+TGG - chr4.3:4779396-4779415 MS.gene55783:intron 45.0%
! GTTGGTGCTTGTATTCATGC+AGG - chr4.3:4779436-4779455 MS.gene55783:intron 45.0%
! GTTTCATTGATGACAGGGTC+GGG - chr4.3:4777941-4777960 MS.gene55783:CDS 45.0%
! TGCTGCAGTTTCTGGGTATT+GGG - chr4.3:4779851-4779870 MS.gene55783:intron 45.0%
!! TGCTGTTGGTTTCATTCCTC+TGG - chr4.3:4780422-4780441 MS.gene55783:intron 45.0%
!! TTTTGGAGACATCAATGGCG+TGG - chr4.3:4780395-4780414 MS.gene55783:CDS 45.0%
!!! GCAGCTATGTTGCCGTTTTT+TGG - chr4.3:4780378-4780397 MS.gene55783:CDS 45.0%
ACGCATTCAGAGGATTAGGG+TGG - chr4.3:4777163-4777182 MS.gene55783:CDS 50.0%
AGTGTTCGAAGAATCAGGCG+AGG + chr4.3:4780333-4780352 None:intergenic 50.0%
CAAAGACGATAGCGAGTCCA+AGG + chr4.3:4779956-4779975 None:intergenic 50.0%
CAAGGAATAGTCCCTTGGAG+GGG + chr4.3:4779566-4779585 None:intergenic 50.0%
CATTCAGAGGATTAGGGTGG+GGG - chr4.3:4777166-4777185 MS.gene55783:CDS 50.0%
CCAAGGAATAGTCCCTTGGA+GGG + chr4.3:4779567-4779586 None:intergenic 50.0%
CCGTACGCATTCAGAGGATT+AGG - chr4.3:4777159-4777178 MS.gene55783:CDS 50.0%
CCTCAAGATGAAGATGACGC+CGG - chr4.3:4776931-4776950 MS.gene55783:CDS 50.0%
CGAGTTCTCGGAAACGGATA+TGG + chr4.3:4777290-4777309 None:intergenic 50.0%
CGCATTCAGAGGATTAGGGT+GGG - chr4.3:4777164-4777183 MS.gene55783:CDS 50.0%
CGGCGTCATCTTCATCTTGA+GGG + chr4.3:4776933-4776952 None:intergenic 50.0%
CGTCATCTTCATCTTGAGGG+TGG + chr4.3:4776930-4776949 None:intergenic 50.0%
GAAATGCGGTTCTGCACGAT+TGG + chr4.3:4777884-4777903 None:intergenic 50.0%
GCATTCAGAGGATTAGGGTG+GGG - chr4.3:4777165-4777184 MS.gene55783:CDS 50.0%
GCCAAAGAAGGTCCATCATC+TGG + chr4.3:4779921-4779940 None:intergenic 50.0%
GGCTACACCTTCCTTGTAGT+TGG - chr4.3:4779418-4779437 MS.gene55783:intron 50.0%
GGTTCCAAGGAATAGTCCCT+TGG + chr4.3:4779571-4779590 None:intergenic 50.0%
GTGTCGTAGGGAATGGAAAG+TGG + chr4.3:4779368-4779387 None:intergenic 50.0%
GTTCTCGGAAACGGATATGG+CGG + chr4.3:4777287-4777306 None:intergenic 50.0%
TACGGCAGCGTTAGTATCGT+TGG + chr4.3:4777144-4777163 None:intergenic 50.0%
TATAGGTGAATGGTGGCACG+CGG - chr4.3:4777089-4777108 MS.gene55783:CDS 50.0%
TCCAAGGAATAGTCCCTTGG+AGG + chr4.3:4779568-4779587 None:intergenic 50.0%
TGGGTGCATTCTCGTCCATA+AGG - chr4.3:4780556-4780575 MS.gene55783:CDS 50.0%
! ACCCAAGTTGGAGCCAAAGA+AGG + chr4.3:4779933-4779952 None:intergenic 50.0%
! ATTGCATGCCTTTGGACTGG+AGG + chr4.3:4776969-4776988 None:intergenic 50.0%
! CTGCTGCAGTTTCTGGGTAT+TGG - chr4.3:4779850-4779869 MS.gene55783:intron 50.0%
! GACCTTCTTTGGCTCCAACT+TGG - chr4.3:4779928-4779947 MS.gene55783:intron 50.0%
!! GCCAGATGATGGACCTTCTT+TGG - chr4.3:4779917-4779936 MS.gene55783:intron 50.0%
!! GGTGTCACTATCATGGGAAG+TGG + chr4.3:4778291-4778310 None:intergenic 50.0%
ACGGCAATCAATACCGGCGT+TGG - chr4.3:4777995-4778014 MS.gene55783:intron 55.0%
ACTCTAGCACCTCCTGCAAC+TGG - chr4.3:4779771-4779790 MS.gene55783:intron 55.0%
AGAGGATTAGGGTGGGGGAT+TGG - chr4.3:4777171-4777190 MS.gene55783:CDS 55.0%
ATAGGTGAATGGTGGCACGC+GGG - chr4.3:4777090-4777109 MS.gene55783:CDS 55.0%
ATGGTGGCATTCACTGGTGC+AGG - chr4.3:4780528-4780547 MS.gene55783:intron 55.0%
CCCTCCAAGGGACTATTCCT+TGG - chr4.3:4779564-4779583 MS.gene55783:intron 55.0%
CCGGCGTCATCTTCATCTTG+AGG + chr4.3:4776934-4776953 None:intergenic 55.0%
GCTTTCGTCCTCCAGTCCAA+AGG - chr4.3:4776958-4776977 MS.gene55783:CDS 55.0%
GGAGACATCAATGGCGTGGT+TGG - chr4.3:4780399-4780418 MS.gene55783:CDS 55.0%
TGCCATGGCAAACCCACCTA+AGG - chr4.3:4776891-4776910 MS.gene55783:CDS 55.0%
TTGGCTCCAACTTGGGTCCT+TGG - chr4.3:4779936-4779955 MS.gene55783:intron 55.0%
! CATTGATGACAGGGTCGGGT+TGG - chr4.3:4777945-4777964 MS.gene55783:CDS 55.0%
! CTCCTTAGGTGGGTTTGCCA+TGG + chr4.3:4776896-4776915 None:intergenic 55.0%
!! AATGGCGTGGTTGGTGCTGT+TGG - chr4.3:4780408-4780427 MS.gene55783:CDS 55.0%
!! ATCAATACCGGCGTTGGCGT+AGG - chr4.3:4778001-4778020 MS.gene55783:intron 55.0%
!! CGCCGGTATTGATTGCCGTT+TGG + chr4.3:4777994-4778013 None:intergenic 55.0%
!! GAAGGCACTGAAGACCCTTG+AGG + chr4.3:4779602-4779621 None:intergenic 55.0%
!! TCAATACCGGCGTTGGCGTA+GGG - chr4.3:4778002-4778021 MS.gene55783:intron 55.0%
ACGCTGCCGTACGCATTCAG+AGG - chr4.3:4777153-4777172 MS.gene55783:CDS 60.0%
AGACATCGGCGGCGAGTTCT+CGG + chr4.3:4777302-4777321 None:intergenic 60.0%
CTGGAGGACGAAAGCAGCTC+CGG + chr4.3:4776953-4776972 None:intergenic 60.0%
GAAACGGATATGGCGGCGAC+CGG + chr4.3:4777280-4777299 None:intergenic 60.0%
GAACTCGCCGCCGATGTCTT+AGG - chr4.3:4777303-4777322 MS.gene55783:intron 60.0%
GCGAGTCCAAGGACCCAAGT+TGG + chr4.3:4779945-4779964 None:intergenic 60.0%
GTAGGGGCAATCCTGCTTGC+TGG - chr4.3:4778019-4778038 MS.gene55783:intron 60.0%
TAGGTGAATGGTGGCACGCG+GGG - chr4.3:4777091-4777110 MS.gene55783:CDS 60.0%
! GCTTGCTGGTCAATGCCTCC+AGG - chr4.3:4778033-4778052 MS.gene55783:intron 60.0%
!! CAATACCGGCGTTGGCGTAG+GGG - chr4.3:4778003-4778022 MS.gene55783:intron 60.0%
!! GGAGGCATTGACCAGCAAGC+AGG + chr4.3:4778033-4778052 None:intergenic 60.0%
CGGCGGCGAGTTCTCGGAAA+CGG + chr4.3:4777296-4777315 None:intergenic 65.0%
GATTGCCCCTACGCCAACGC+CGG + chr4.3:4778011-4778030 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 4776890 4780635 4776890 ID=MS.gene55783
chr4.3 mRNA 4776890 4780635 4776890 ID=MS.gene55783.t1;Parent=MS.gene55783
chr4.3 exon 4780554 4780635 4780554 ID=MS.gene55783.t1.exon1;Parent=MS.gene55783.t1
chr4.3 CDS 4780554 4780635 4780554 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4780201 4780431 4780201 ID=MS.gene55783.t1.exon2;Parent=MS.gene55783.t1
chr4.3 CDS 4780201 4780431 4780201 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4779471 4779568 4779471 ID=MS.gene55783.t1.exon3;Parent=MS.gene55783.t1
chr4.3 CDS 4779471 4779568 4779471 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4778068 4778254 4778068 ID=MS.gene55783.t1.exon4;Parent=MS.gene55783.t1
chr4.3 CDS 4778068 4778254 4778068 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4777847 4777977 4777847 ID=MS.gene55783.t1.exon5;Parent=MS.gene55783.t1
chr4.3 CDS 4777847 4777977 4777847 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4777521 4777757 4777521 ID=MS.gene55783.t1.exon6;Parent=MS.gene55783.t1
chr4.3 CDS 4777521 4777757 4777521 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
chr4.3 exon 4776890 4777279 4776890 ID=MS.gene55783.t1.exon7;Parent=MS.gene55783.t1
chr4.3 CDS 4776890 4777279 4776890 ID=cds.MS.gene55783.t1;Parent=MS.gene55783.t1
Gene Sequence

>MS.gene55783

ATGCCATGGCAAACCCACCTAAGGAGAATCAGAATCACCACCCTCAAGATGAAGATGACGCCGGAGCTGCTTTCGTCCTCCAGTCCAAAGGCATGCAATTTTTCTATACTCTTCAACATTTAATTTTTCTCTTCTTTAAATTCATCTTTAATAATTCATTAAATATCTATCTATCTATCTAAAGATATGAATTGATTGATATAGGTGAATGGTGGCACGCGGGGTATCATTTAACAACGGCGATTGTAGGGCCAACGATACTAACGCTGCCGTACGCATTCAGAGGATTAGGGTGGGGGATTGGAATGTTATGCCTAACAGTTATGGGTCTTGTAACCTTCTACTCTTACTGCCTCATGTCTAAAGTTCTTGATCATTGCGAAAATGCCGGTCGCCGCCATATCCGTTTCCGAGAACTCGCCGCCGATGTCTTAGGTGATGTAATCTTTACTTTGCACGTTTGCATTGTGTTCATCTTGCATTTTCTTTTCTAATTCTTTTTCTGGTATTTAAGATTTTCTATATTCAGGATATGCCATTTTCAAACATTAATAATTACTACTTACCTAATTAGAAAAACCGTACAAATTGAAATTAAAGTCAAACTGTTCCTCTATCAATCAATAATTGTTTTTTTAGAGGATCAATCAATAATTGTTATTTCACCATTCATTATCTGATATGCGTTAATAGTTGATTTATTCATCTACATGTTATATTAAAATAATTTCCACAATTATTTGGTAATCTAATCTCATTTAATTAATTAAAAAATGTATATGAAAATTAAAATATGCACCATATTTTATAAGATAAATAGTTTTTTTTTTTTTTTCCTTTTGTTGAGTGTTTCTTCTCTCTCGTAAGGACCAATGCTTAGAATCAATGATATCCAAGTTTTATTACTACAAGATATGGTGGTGTGTACTGTGTACATAACATAACACAACACAAGTGATATTTTTAATGAGTAATAAGTTAGTAACAAGGACCAATCGTGCAGAACCGCATTTCTAGATTTGTACGATATGAATTTTCTTAAATTTTGTTGGTTTCATTGATGACAGGGTCGGGTTGGATGTTCTATTTTGTAATCTTTATCCAAACGGCAATCAATACCGGCGTTGGCGTAGGGGCAATCCTGCTTGCTGGTCAATGCCTCCAGGTTAGCTTTCCAATTATTTTTAGTAATTTTACTTTACTAATATACTTTAATATTTGCTCAAAATAAAAAAAATTTAATATTGCACGGATTTAAATAAATAAGGGTAAAATAGGGGAAATTCTTTGTCTTTTTCTATCATTTGACATACATTTTATTTTATATAGTGTCATTCTCAAATCAAAGATACCATATACAAGAAAAATACTAGAATTTTTACCAAAAAATATAATACCCCACTTCCCATGATAGTGACACCAATGAGAGCAACTAGTTTTTTTTTCTGCTTTTTTTGAGGGATTGAAAGCAACTAGTTGTTATTGTAGACACGCATGGTTTTCATTCAACATAGACGGACACATAATGATCATATTGATCATAGTGAGTGACAATCTGAAAACGGGTGATGGTTGTCGTTGCGAAGATGACAAGTTAAATTCCATCCACATTCAATACTAGTATGAAATAGGTGACCCCTATCACTATGGTGTATATGGAACTTTTCACATTTGGTCCACTTTGTTTGGACCTGTATGAATTATGATAACTTTTAGGTTCAGCTAAGTTCGTATATCTATATTCTCTCCACAAATAATGGTTCTAAAATACTCCCTCCGGTCACATTTATAAACAAAAAACAACTTTTTAGGTTCATTGAATGATTAACGTATCTAGTCTATATAAAGACCAAATACATCAAATATTCAATGAATCTAATAAAGTGATTTTTGCTTATAAATGTGACCGGAGGGAGTATTGTACAATGTACCACTTGTTAGCTTGTCCATGCTAGATCAAGATAATTAAGAAAAACTGGTAATGTTATTTATTAAATTTAATAACAATTTTGTATTTAATATTTATTGTTGATTATAGACAAATATGTAAAATAAATAGGAGCATGTAAGTAAAATGCAATTAAAATTATTAAAATGTATTCTATAAAAAGAGGCAAGAATTTTTTTCTATAGGTTCTAGATTTGAGAACACAGCAGTCATTTTTATTTTGCTTCCGATAGTGGATGTCTGATCTTTTATGGAACAGGGGAGTCCGATTTTTTTTTGTTCTTAATTAGTAATATAGGTATGTATAATGTATATACACATTTTGTAGCTAAAAAATCACTAATAAACAATGATTTAGAATGTTAAAATACTTGGCTCAAGAAAATGGCGTTCGTTTTAATATTTCAATTTGTGATTTGGTATTTTCTTTTAGATCGTGTACTCCAATATTGCACCACATGGAGCATTGAAACTGTACGACTTCATAGCAATGGTGACAGTAGTCATGATAATTTTGTCTCAGCTTCCCACTTTCCATTCCCTACGACACATCAACTTGTGTTCCCTTTTTCTCAGCTTGGGCTACACCTTCCTTGTAGTTGGTGCTTGTATTCATGCAGGTATGGACTAGTATATATTACAAAATTATTACCCCCTTGATTACATTTATGTTACAAATATTCATTATGCGATTAAACTTGATATTGTAGGTACATCAAAAAATGCCCCTCCAAGGGACTATTCCTTGGAACCTAAGGAATCCTCAAGGGTCTTCAGTGCCTTCACTGCCATTTCCATAATTGCAGCAATTTTTGGGAATGGCATATTACCTGAGATACAAGTAACCATTTTGTCCTCTTTCTAAATTGAAATAATTACCAGACAAATATATTGCTAGATTAACCATGTCATTATGAATTAATTGTATAGGCAACTCTAGCACCTCCTGCAACTGGAAAGATGATAAAAGGCCTTACTATGTGTTATGCTGTAATTTTGGTGACATTCTACTCTGCTGCAGTTTCTGGGTATTGGGTATTTGGAAACAAGTCCAACTCCAACATTTTGAAGAGTTTGATGCCAGATGATGGACCTTCTTTGGCTCCAACTTGGGTCCTTGGACTCGCTATCGTCTTTGTTCTTCTTCAACTCTTCGCAATCGGTTTGGTAAGCTCACAAACACAAATATAAGGGATTGAATTGGTTTGAACTATGGCCGCGATTACAAACTTGTAATTATACTGTAATTGTTGATATTGCGGATAAATGCAACTACAATTGTAGTTGCTATAAGTCGTAGAGGTTTCCAATTTCCAAAGCCTTTACAATGTGACGGTCTTTGCAGGTTGCAATTTAGGACTATACTAAATAATAAGCAATAATAATTTTAGTCTTATCATATTTATAGGTTTATTCTCAAGTTGCTTATGAGATAATGGAGAAGAAATCGGCAGATGTGAAGCAAGGGATGTTTTCCAAAAGAAATCTTCTTCCTCGCCTGATTCTTCGAACACTTTACATGATTTTCTGTGGATTTCTAGCAGCTATGTTGCCGTTTTTTGGAGACATCAATGGCGTGGTTGGTGCTGTTGGTTTCATTCCTCTGGATTTTGTCCTGCCTATGATTTTATACAACAAAACACACAAGCCTCCAAAATCATCATTGACTTATTGGATCAACATTTCAATCATGGTGGCATTCACTGGTGCAGGAATCATGGGTGCATTCTCGTCCATAAGGAAATTAGTTCTTGATGCTAACCAATTTAAGCTGTTTGATAGTGAAGTTGTGGATTGA
Protein sequence

>MS.gene55783.t1

MPWQTHLRRIRITTLKMKMTPELLSSSSEWWHAGYHLTTAIVGPTILTLPYAFRGLGWGIGMLCLTVMGLVTFYSYCLMSKVLDHCENAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGVGAILLAGQCLQIVYSNIAPHGALKLYDFIAMVTVVMIILSQLPTFHSLRHINLCSLFLSLGYTFLVVGACIHAGTSKNAPPRDYSLEPKESSRVFSAFTAISIIAAIFGNGILPEIQATLAPPATGKMIKGLTMCYAVILVTFYSAAVSGYWVFGNKSNSNILKSLMPDDGPSLAPTWVLGLAIVFVLLQLFAIGLVYSQVAYEIMEKKSADVKQGMFSKRNLLPRLILRTLYMIFCGFLAAMLPFFGDINGVVGAVGFIPLDFVLPMILYNKTHKPPKSSLTYWINISIMVAFTGAGIMGAFSSIRKLVLDANQFKLFDSEVVD