Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55811.t1 | XP_004503608.1 | 75.8 | 211 | 50 | 1 | 1 | 210 | 5 | 215 | 5.90E-76 | 293.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55811.t1 | Q3HRP0 | 54.8 | 210 | 95 | 0 | 1 | 210 | 1 | 210 | 8.5e-55 | 214.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55811.t1 | A0A1S2YEF0 | 75.8 | 211 | 50 | 1 | 1 | 210 | 5 | 215 | 4.3e-76 | 293.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061044 | MS.gene55811 | 0.801048 | 1.08E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55811.t1 | MTR_8g099575 | 98.571 | 210 | 3 | 0 | 1 | 210 | 1 | 210 | 1.51e-151 | 419 |
| MS.gene55811.t1 | MTR_3g091440 | 64.455 | 211 | 74 | 1 | 1 | 210 | 1 | 211 | 3.71e-98 | 284 |
| MS.gene55811.t1 | MTR_3g091440 | 66.486 | 185 | 62 | 0 | 26 | 210 | 28 | 212 | 4.37e-91 | 266 |
| MS.gene55811.t1 | MTR_4g099210 | 54.762 | 210 | 95 | 0 | 1 | 210 | 1 | 210 | 2.60e-86 | 254 |
| MS.gene55811.t1 | MTR_8g027620 | 62.564 | 195 | 73 | 0 | 16 | 210 | 39 | 233 | 2.41e-85 | 255 |
| MS.gene55811.t1 | MTR_5g096420 | 55.714 | 210 | 93 | 0 | 1 | 210 | 16 | 225 | 8.07e-83 | 246 |
| MS.gene55811.t1 | MTR_4g134250 | 57.949 | 195 | 82 | 0 | 16 | 210 | 32 | 226 | 1.66e-82 | 245 |
| MS.gene55811.t1 | MTR_3g060730 | 58.462 | 195 | 81 | 0 | 16 | 210 | 31 | 225 | 5.46e-82 | 243 |
| MS.gene55811.t1 | MTR_1g016430 | 63.102 | 187 | 69 | 0 | 21 | 207 | 60 | 246 | 7.40e-82 | 244 |
| MS.gene55811.t1 | MTR_1g016430 | 62.778 | 180 | 67 | 0 | 28 | 207 | 1 | 180 | 8.97e-80 | 236 |
| MS.gene55811.t1 | MTR_3g060730 | 59.016 | 183 | 75 | 0 | 28 | 210 | 5 | 187 | 3.57e-79 | 235 |
| MS.gene55811.t1 | MTR_1g016430 | 62.778 | 180 | 67 | 0 | 28 | 207 | 99 | 278 | 3.70e-78 | 236 |
| MS.gene55811.t1 | MTR_8g099570 | 51.429 | 210 | 99 | 1 | 1 | 210 | 46 | 252 | 5.03e-78 | 234 |
| MS.gene55811.t1 | MTR_2g027500 | 52.404 | 208 | 99 | 0 | 3 | 210 | 16 | 223 | 1.19e-77 | 232 |
| MS.gene55811.t1 | MTR_5g013560 | 50.952 | 210 | 91 | 2 | 1 | 210 | 1 | 198 | 1.11e-73 | 221 |
| MS.gene55811.t1 | MTR_2g027440 | 53.500 | 200 | 93 | 0 | 11 | 210 | 29 | 228 | 3.61e-73 | 221 |
| MS.gene55811.t1 | MTR_2g027480 | 51.429 | 210 | 100 | 1 | 3 | 210 | 19 | 228 | 2.21e-72 | 219 |
| MS.gene55811.t1 | MTR_2g027520 | 55.615 | 187 | 83 | 0 | 24 | 210 | 44 | 230 | 5.06e-70 | 213 |
| MS.gene55811.t1 | MTR_8g016170 | 56.842 | 190 | 82 | 0 | 21 | 210 | 66 | 255 | 5.91e-69 | 211 |
| MS.gene55811.t1 | MTR_3g091440 | 64.331 | 157 | 55 | 1 | 1 | 156 | 1 | 157 | 2.27e-67 | 204 |
| MS.gene55811.t1 | MTR_4g113505 | 47.568 | 185 | 97 | 0 | 26 | 210 | 5 | 189 | 7.84e-64 | 197 |
| MS.gene55811.t1 | MTR_8g016170 | 57.803 | 173 | 73 | 0 | 21 | 193 | 47 | 219 | 7.19e-63 | 194 |
| MS.gene55811.t1 | MTR_4g107490 | 30.488 | 164 | 96 | 5 | 16 | 175 | 360 | 509 | 2.24e-12 | 65.5 |
| MS.gene55811.t1 | MTR_1g076650 | 36.719 | 128 | 68 | 5 | 49 | 173 | 25 | 142 | 1.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55811.t1 | AT1G64480 | 66.190 | 210 | 71 | 0 | 1 | 210 | 5 | 214 | 1.45e-93 | 272 |
| MS.gene55811.t1 | AT1G64480 | 66.190 | 210 | 71 | 0 | 1 | 210 | 5 | 214 | 1.45e-93 | 272 |
| MS.gene55811.t1 | AT1G64480 | 66.190 | 210 | 71 | 0 | 1 | 210 | 5 | 214 | 1.45e-93 | 272 |
| MS.gene55811.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 16 | 210 | 20 | 214 | 6.39e-87 | 256 |
| MS.gene55811.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 16 | 210 | 20 | 214 | 6.39e-87 | 256 |
| MS.gene55811.t1 | AT5G24270 | 63.077 | 195 | 72 | 0 | 16 | 210 | 20 | 214 | 6.39e-87 | 256 |
| MS.gene55811.t1 | AT4G17615 | 56.190 | 210 | 92 | 0 | 1 | 210 | 1 | 210 | 7.61e-86 | 253 |
| MS.gene55811.t1 | AT4G17615 | 56.190 | 210 | 92 | 0 | 1 | 210 | 1 | 210 | 7.61e-86 | 253 |
| MS.gene55811.t1 | AT4G17615 | 56.190 | 210 | 92 | 0 | 1 | 210 | 1 | 210 | 7.61e-86 | 253 |
| MS.gene55811.t1 | AT5G47100 | 55.238 | 210 | 94 | 0 | 1 | 210 | 1 | 210 | 5.27e-85 | 251 |
| MS.gene55811.t1 | AT5G24270 | 63.978 | 186 | 67 | 0 | 25 | 210 | 4 | 189 | 1.58e-84 | 249 |
| MS.gene55811.t1 | AT1G64480 | 65.803 | 193 | 66 | 0 | 1 | 193 | 5 | 197 | 1.06e-83 | 247 |
| MS.gene55811.t1 | AT4G26570 | 55.769 | 208 | 92 | 0 | 3 | 210 | 18 | 225 | 2.58e-81 | 242 |
| MS.gene55811.t1 | AT5G55990 | 53.810 | 210 | 97 | 0 | 1 | 210 | 16 | 225 | 1.55e-79 | 237 |
| MS.gene55811.t1 | AT5G55990 | 53.810 | 210 | 97 | 0 | 1 | 210 | 16 | 225 | 1.55e-79 | 237 |
| MS.gene55811.t1 | AT4G33000 | 55.981 | 209 | 91 | 1 | 3 | 210 | 38 | 246 | 3.71e-79 | 237 |
| MS.gene55811.t1 | AT4G26570 | 57.949 | 195 | 78 | 1 | 20 | 210 | 35 | 229 | 5.00e-79 | 236 |
| MS.gene55811.t1 | AT4G33000 | 55.981 | 209 | 91 | 1 | 3 | 210 | 48 | 256 | 5.83e-79 | 237 |
| MS.gene55811.t1 | AT4G17615 | 55.612 | 196 | 87 | 0 | 1 | 196 | 1 | 196 | 3.42e-76 | 229 |
| MS.gene55811.t1 | AT4G16350 | 50.485 | 206 | 97 | 2 | 5 | 210 | 19 | 219 | 2.24e-69 | 211 |
| MS.gene55811.t1 | AT4G16350 | 50.485 | 206 | 97 | 2 | 5 | 210 | 19 | 219 | 2.24e-69 | 211 |
| MS.gene55811.t1 | AT5G24270 | 60.510 | 157 | 62 | 0 | 54 | 210 | 11 | 167 | 2.23e-68 | 207 |
| MS.gene55811.t1 | AT4G17615 | 57.962 | 157 | 66 | 0 | 54 | 210 | 12 | 168 | 8.08e-68 | 206 |
| MS.gene55811.t1 | AT4G01420 | 47.317 | 205 | 103 | 2 | 1 | 203 | 1 | 202 | 2.80e-61 | 190 |
| MS.gene55811.t1 | AT4G01420 | 47.668 | 193 | 100 | 1 | 1 | 193 | 1 | 192 | 5.81e-57 | 179 |
| MS.gene55811.t1 | AT5G47100 | 52.564 | 156 | 74 | 0 | 1 | 156 | 1 | 156 | 7.33e-57 | 178 |
| MS.gene55811.t1 | AT4G26560 | 44.503 | 191 | 93 | 2 | 33 | 210 | 23 | 213 | 5.01e-53 | 169 |
| MS.gene55811.t1 | AT4G33000 | 52.903 | 155 | 72 | 1 | 3 | 156 | 38 | 192 | 1.88e-50 | 162 |
| MS.gene55811.t1 | AT4G33000 | 52.903 | 155 | 72 | 1 | 3 | 156 | 38 | 192 | 1.88e-50 | 162 |
| MS.gene55811.t1 | AT4G33000 | 52.564 | 156 | 73 | 1 | 3 | 157 | 38 | 193 | 2.08e-50 | 163 |
| MS.gene55811.t1 | AT4G33000 | 55.963 | 109 | 47 | 1 | 3 | 110 | 38 | 146 | 1.39e-33 | 118 |
Find 33 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAACGGAGTAATTGAATT+TGG | 0.204781 | 4.3:+4453115 | MS.gene55811:CDS |
| TTCTTCTCTTCAGATGTCTT+TGG | 0.273008 | 4.3:-4453169 | None:intergenic |
| TGTTGAATCCATTGTGGAAA+AGG | 0.373453 | 4.3:+4454011 | MS.gene55811:CDS |
| AAGGAAACCTACTTTAGATA+TGG | 0.376068 | 4.3:-4454236 | None:intergenic |
| AGGAGATGGGAAGATTGATA+TGG | 0.412059 | 4.3:+4454157 | MS.gene55811:CDS |
| CTCGGTGTGCAAAACAAAGC+TGG | 0.421434 | 4.3:-4454390 | None:intergenic |
| CATTTAAACTGTTTGACCTT+GGG | 0.422487 | 4.3:+4453289 | MS.gene55811:CDS |
| GCCTGTCAGGGATATAACTA+TGG | 0.426019 | 4.3:+4454361 | MS.gene55811:intron |
| AGTAGTTCAATTATTGATGA+TGG | 0.437437 | 4.3:+4452589 | MS.gene55811:CDS |
| CTGTTTGACCTTGGGAAGAC+AGG | 0.454872 | 4.3:+4453297 | MS.gene55811:CDS |
| TAAGTTGAAGGAGATGGTCT+TGG | 0.456945 | 4.3:+4453948 | MS.gene55811:intron |
| GCATTTAAACTGTTTGACCT+TGG | 0.472507 | 4.3:+4453288 | MS.gene55811:CDS |
| ACAATCCTCCATTCTTGCAT+TGG | 0.478856 | 4.3:+4452133 | MS.gene55811:CDS |
| AGCAGAATCTACTAGCAAGC+AGG | 0.484788 | 4.3:+4452863 | MS.gene55811:CDS |
| TATTTCTGAAAAGTGCGAGT+TGG | 0.503450 | 4.3:-4452834 | None:intergenic |
| ATGGAGGAGGTTGACTCAAA+AGG | 0.503493 | 4.3:+4454137 | MS.gene55811:CDS |
| TGATGTCTCCAATGCAAGAA+TGG | 0.505051 | 4.3:-4452141 | None:intergenic |
| GAGGTTGACTCAAAAGGAGA+TGG | 0.510798 | 4.3:+4454143 | MS.gene55811:CDS |
| GTCATGATCTTAAGAAGAGA+AGG | 0.521718 | 4.3:-4454209 | None:intergenic |
| TTTGACAGTTACTGTGAATG+AGG | 0.571808 | 4.3:+4452534 | MS.gene55811:intron |
| CGATATTGTTGAATCCATTG+TGG | 0.573614 | 4.3:+4454005 | MS.gene55811:CDS |
| CACACTTAAGTTGAAGGAGA+TGG | 0.574192 | 4.3:+4453942 | MS.gene55811:intron |
| TCGGTGTGCAAAACAAAGCT+GGG | 0.576484 | 4.3:-4454389 | None:intergenic |
| GGAAGATTGATATGGAAGAG+TGG | 0.580086 | 4.3:+4454165 | MS.gene55811:CDS |
| AGTTACTGTGAATGAGGTTG+AGG | 0.584753 | 4.3:+4452540 | MS.gene55811:intron |
| AGGTTGACTCAAAAGGAGAT+GGG | 0.599352 | 4.3:+4454144 | MS.gene55811:CDS |
| ATGTTTGATATTAAGCGTAA+CGG | 0.599376 | 4.3:+4453100 | MS.gene55811:CDS |
| TGATGATGGCTGCATTCACA+AGG | 0.608057 | 4.3:+4452603 | MS.gene55811:CDS |
| CAATGTATCCTGTCTTCCCA+AGG | 0.609387 | 4.3:-4453305 | None:intergenic |
| GCAGAATCTACTAGCAAGCA+GGG | 0.624093 | 4.3:+4452864 | MS.gene55811:CDS |
| TTGTTGCTAATCTTCCACCT+CGG | 0.643102 | 4.3:-4454408 | None:intergenic |
| TGTCTCCAATGCAAGAATGG+AGG | 0.670674 | 4.3:-4452138 | None:intergenic |
| AGGATACATTGAGCATAGTG+AGG | 0.693274 | 4.3:+4453317 | MS.gene55811:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATGTCAATTTTTAT+AGG | - | chr4.3:4453767-4453786 | None:intergenic | 10.0% |
| !!! | TTTTAAATGAAATTTTATAG+TGG | + | chr4.3:4452982-4453001 | MS.gene55811:intron | 10.0% |
| !! | AAATAAATAAATGACTAACT+CGG | - | chr4.3:4452905-4452924 | None:intergenic | 15.0% |
| !!! | TTCATAGTTACTATTATTTT+TGG | + | chr4.3:4454263-4454282 | MS.gene55811:intron | 15.0% |
| !! | AACTGTAAGAACAAAATAAA+TGG | - | chr4.3:4453268-4453287 | None:intergenic | 20.0% |
| !! | AAGAGATAAGAATTAAATTG+AGG | - | chr4.3:4454088-4454107 | None:intergenic | 20.0% |
| !! | AATAGTAACTATGAAATTGA+AGG | - | chr4.3:4454258-4454277 | None:intergenic | 20.0% |
| !! | GATAAAGATTGACATAATTA+TGG | + | chr4.3:4453638-4453657 | MS.gene55811:intron | 20.0% |
| !! | TTAACAGTAAAAGATTAGAA+TGG | - | chr4.3:4454304-4454323 | None:intergenic | 20.0% |
| !! | TTGACATTAAAATCTCAAAA+TGG | + | chr4.3:4453774-4453793 | MS.gene55811:intron | 20.0% |
| !! | TTTGTATTAATTTACCCTTT+AGG | + | chr4.3:4453442-4453461 | MS.gene55811:intron | 20.0% |
| !!! | TCAAAATGGTCTTATATTTA+AGG | + | chr4.3:4453788-4453807 | MS.gene55811:intron | 20.0% |
| ! | AAAGTGAAATTGATGAACAA+TGG | - | chr4.3:4453362-4453381 | None:intergenic | 25.0% |
| ! | AGTAGTTCAATTATTGATGA+TGG | + | chr4.3:4452589-4452608 | MS.gene55811:CDS | 25.0% |
| ! | ATGTTTGATATTAAGCGTAA+CGG | + | chr4.3:4453100-4453119 | MS.gene55811:CDS | 25.0% |
| ! | GATAAATGTATGGTTTCATA+TGG | - | chr4.3:4454044-4454063 | None:intergenic | 25.0% |
| ! | TTCTTATCTCTTATACTTCT+TGG | + | chr4.3:4454096-4454115 | MS.gene55811:intron | 25.0% |
| ! | TTGTTCATCAATTTCACTTT+AGG | + | chr4.3:4453362-4453381 | MS.gene55811:intron | 25.0% |
| !!! | TGAACCTTTTTTGTACATAA+TGG | + | chr4.3:4453919-4453938 | MS.gene55811:intron | 25.0% |
| AAGGAAACCTACTTTAGATA+TGG | - | chr4.3:4454239-4454258 | None:intergenic | 30.0% | |
| ACTACTAAAGTTACATGAGA+AGG | - | chr4.3:4453847-4453866 | None:intergenic | 30.0% | |
| ATGAACAATGGAAAGGTTAA+AGG | - | chr4.3:4453350-4453369 | None:intergenic | 30.0% | |
| ATTGAAGGAGGATAAATGTA+TGG | - | chr4.3:4454054-4454073 | None:intergenic | 30.0% | |
| CATTTAAACTGTTTGACCTT+GGG | + | chr4.3:4453289-4453308 | MS.gene55811:CDS | 30.0% | |
| GAAACTATAGAAATTGAAGG+AGG | - | chr4.3:4454066-4454085 | None:intergenic | 30.0% | |
| GAAATTGATGAACAATGGAA+AGG | - | chr4.3:4453357-4453376 | None:intergenic | 30.0% | |
| GAGGAAACTATAGAAATTGA+AGG | - | chr4.3:4454069-4454088 | None:intergenic | 30.0% | |
| TAATCATATATGAGCCTGTT+TGG | - | chr4.3:4452445-4452464 | None:intergenic | 30.0% | |
| TATACATGTCAGATTTCTTG+TGG | + | chr4.3:4452480-4452499 | MS.gene55811:intron | 30.0% | |
| TCCATTGTCTAAAAAAGATC+AGG | - | chr4.3:4454122-4454141 | None:intergenic | 30.0% | |
| TGAAACATGGATGAAATTCA+TGG | + | chr4.3:4452959-4452978 | MS.gene55811:intron | 30.0% | |
| TGCAATATCAGTTCATATAG+AGG | - | chr4.3:4452690-4452709 | None:intergenic | 30.0% | |
| ! | CACATCTTCAATCTAAAGTA+TGG | + | chr4.3:4452321-4452340 | MS.gene55811:intron | 30.0% |
| ! | TGTGCCATTATGTACAAAAA+AGG | - | chr4.3:4453926-4453945 | None:intergenic | 30.0% |
| !! | CAACAAAAATCTCTGAAACA+TGG | + | chr4.3:4452946-4452965 | MS.gene55811:intron | 30.0% |
| !! | GATTGTTCTTGCTTAGTTTT+TGG | - | chr4.3:4452119-4452138 | None:intergenic | 30.0% |
| !!! | TGATCTTTTTTAGACAATGG+AGG | + | chr4.3:4454121-4454140 | MS.gene55811:intron | 30.0% |
| !!! | TTGTGGTTTTAACTCTGAAT+TGG | + | chr4.3:4452497-4452516 | MS.gene55811:intron | 30.0% |
| AAAATCAAGTGAGTTTGGCA+AGG | - | chr4.3:4453498-4453517 | None:intergenic | 35.0% | |
| AACATTTGCTCAAACCAAAC+AGG | + | chr4.3:4452428-4452447 | MS.gene55811:intron | 35.0% | |
| AAGCTAAGAAAACTGAATGC+AGG | + | chr4.3:4453069-4453088 | MS.gene55811:intron | 35.0% | |
| CATTCACAGTAACTGTCAAA+TGG | - | chr4.3:4452534-4452553 | None:intergenic | 35.0% | |
| CGATATTGTTGAATCCATTG+TGG | + | chr4.3:4454005-4454024 | MS.gene55811:CDS | 35.0% | |
| CTCAATTGAATCTCTCTTCT+CGG | + | chr4.3:4452364-4452383 | MS.gene55811:intron | 35.0% | |
| CTTCAAGACAATTTATCTGC+AGG | + | chr4.3:4452804-4452823 | MS.gene55811:intron | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | - | chr4.3:4452319-4452338 | None:intergenic | 35.0% | |
| GCATTTAAACTGTTTGACCT+TGG | + | chr4.3:4453288-4453307 | MS.gene55811:CDS | 35.0% | |
| GTCATGATCTTAAGAAGAGA+AGG | - | chr4.3:4454212-4454231 | None:intergenic | 35.0% | |
| TCACCAAAATCAAGTGAGTT+TGG | - | chr4.3:4453503-4453522 | None:intergenic | 35.0% | |
| TGTTGAATCCATTGTGGAAA+AGG | + | chr4.3:4454011-4454030 | MS.gene55811:CDS | 35.0% | |
| TTCTTCTCTTCAGATGTCTT+TGG | - | chr4.3:4453172-4453191 | None:intergenic | 35.0% | |
| TTTGACAGTTACTGTGAATG+AGG | + | chr4.3:4452534-4452553 | MS.gene55811:intron | 35.0% | |
| ! | CGTAACGGAGTAATTGAATT+TGG | + | chr4.3:4453115-4453134 | MS.gene55811:CDS | 35.0% |
| ! | GGTCTTATATTTAAGGACAG+AGG | + | chr4.3:4453795-4453814 | MS.gene55811:intron | 35.0% |
| ! | GTTAAGAACCTTTTCCACAA+TGG | - | chr4.3:4454022-4454041 | None:intergenic | 35.0% |
| ! | TATTTCTGAAAAGTGCGAGT+TGG | - | chr4.3:4452837-4452856 | None:intergenic | 35.0% |
| ! | TTGCCAAACTCACTTGATTT+TGG | + | chr4.3:4453497-4453516 | MS.gene55811:intron | 35.0% |
| !! | TAATGGCACACTTAAGTTGA+AGG | + | chr4.3:4453936-4453955 | MS.gene55811:intron | 35.0% |
| !!! | AGCTGTTTTTGCTTGATGAA+AGG | + | chr4.3:4452089-4452108 | MS.gene55811:CDS | 35.0% |
| !!! | GCCTGATCTTTTTTAGACAA+TGG | + | chr4.3:4454118-4454137 | MS.gene55811:intron | 35.0% |
| !!! | TCTTTTTTAGACAATGGAGG+AGG | + | chr4.3:4454124-4454143 | MS.gene55811:intron | 35.0% |
| AAATGAATGTTGTGCCTGTC+AGG | + | chr4.3:4454348-4454367 | MS.gene55811:intron | 40.0% | |
| AATGAATGTTGTGCCTGTCA+GGG | + | chr4.3:4454349-4454368 | MS.gene55811:intron | 40.0% | |
| ACAATCCTCCATTCTTGCAT+TGG | + | chr4.3:4452133-4452152 | MS.gene55811:CDS | 40.0% | |
| AGGAGATGGGAAGATTGATA+TGG | + | chr4.3:4454157-4454176 | MS.gene55811:CDS | 40.0% | |
| AGGATACATTGAGCATAGTG+AGG | + | chr4.3:4453317-4453336 | MS.gene55811:CDS | 40.0% | |
| AGTTACTGTGAATGAGGTTG+AGG | + | chr4.3:4452540-4452559 | MS.gene55811:intron | 40.0% | |
| CAAGACAATTTATCTGCAGG+AGG | + | chr4.3:4452807-4452826 | MS.gene55811:intron | 40.0% | |
| CATGTATAGAGCTATAGCAG+CGG | - | chr4.3:4452468-4452487 | None:intergenic | 40.0% | |
| GGAAGATTGATATGGAAGAG+TGG | + | chr4.3:4454165-4454184 | MS.gene55811:CDS | 40.0% | |
| TGATGTCTCCAATGCAAGAA+TGG | - | chr4.3:4452144-4452163 | None:intergenic | 40.0% | |
| ! | AAGTTGATTCTGTGCAGGTT+TGG | - | chr4.3:4453585-4453604 | None:intergenic | 40.0% |
| ! | AGGTTGACTCAAAAGGAGAT+GGG | + | chr4.3:4454144-4454163 | MS.gene55811:CDS | 40.0% |
| ! | GACTCTGCCATATCTAAAGT+AGG | + | chr4.3:4454229-4454248 | MS.gene55811:intron | 40.0% |
| ! | GCAGCTTTGACAAAATCACA+TGG | + | chr4.3:4453395-4453414 | MS.gene55811:intron | 40.0% |
| ! | TAAGTTGAAGGAGATGGTCT+TGG | + | chr4.3:4453948-4453967 | MS.gene55811:intron | 40.0% |
| !! | ATTCTGTGCAGGTTTGGTTT+TGG | - | chr4.3:4453579-4453598 | None:intergenic | 40.0% |
| !! | CACACTTAAGTTGAAGGAGA+TGG | + | chr4.3:4453942-4453961 | MS.gene55811:intron | 40.0% |
| !! | GACATAAGTTGATTCTGTGC+AGG | - | chr4.3:4453590-4453609 | None:intergenic | 40.0% |
| !!! | TTCTGTGCAGGTTTGGTTTT+GGG | - | chr4.3:4453578-4453597 | None:intergenic | 40.0% |
| AGCAGAATCTACTAGCAAGC+AGG | + | chr4.3:4452863-4452882 | MS.gene55811:CDS | 45.0% | |
| CAATGTATCCTGTCTTCCCA+AGG | - | chr4.3:4453308-4453327 | None:intergenic | 45.0% | |
| GCAGAATCTACTAGCAAGCA+GGG | + | chr4.3:4452864-4452883 | MS.gene55811:CDS | 45.0% | |
| GCCATAGTTATATCCCTGAC+AGG | - | chr4.3:4454365-4454384 | None:intergenic | 45.0% | |
| GCCTGTCAGGGATATAACTA+TGG | + | chr4.3:4454361-4454380 | MS.gene55811:intron | 45.0% | |
| TCGGTGTGCAAAACAAAGCT+GGG | - | chr4.3:4454392-4454411 | None:intergenic | 45.0% | |
| TGTCTCCAATGCAAGAATGG+AGG | - | chr4.3:4452141-4452160 | None:intergenic | 45.0% | |
| ! | ACCCTTTAGGAGATAGAGTG+CGG | + | chr4.3:4453455-4453474 | MS.gene55811:intron | 45.0% |
| ! | ATGGAGGAGGTTGACTCAAA+AGG | + | chr4.3:4454137-4454156 | MS.gene55811:CDS | 45.0% |
| ! | GAGGTTGACTCAAAAGGAGA+TGG | + | chr4.3:4454143-4454162 | MS.gene55811:CDS | 45.0% |
| !! | TGATGATGGCTGCATTCACA+AGG | + | chr4.3:4452603-4452622 | MS.gene55811:CDS | 45.0% |
| !!! | TCTGTGCAGGTTTGGTTTTG+GGG | - | chr4.3:4453577-4453596 | None:intergenic | 45.0% |
| !!! | TTTGGTTTTGGGGGTAGCAT+TGG | - | chr4.3:4453567-4453586 | None:intergenic | 45.0% |
| ACCCGCACTCTATCTCCTAA+AGG | - | chr4.3:4453460-4453479 | None:intergenic | 50.0% | |
| AGAGTGCGGGTTTGGATTCA+CGG | + | chr4.3:4453469-4453488 | MS.gene55811:intron | 50.0% | |
| CCCGCACTCTATCTCCTAAA+GGG | - | chr4.3:4453459-4453478 | None:intergenic | 50.0% | |
| CTGTTTGACCTTGGGAAGAC+AGG | + | chr4.3:4453297-4453316 | MS.gene55811:CDS | 50.0% | |
| TAGGAGATAGAGTGCGGGTT+TGG | + | chr4.3:4453461-4453480 | MS.gene55811:intron | 50.0% | |
| ! | CCCTTTAGGAGATAGAGTGC+GGG | + | chr4.3:4453456-4453475 | MS.gene55811:intron | 50.0% |
| ! | CTCGGTGTGCAAAACAAAGC+TGG | - | chr4.3:4454393-4454412 | None:intergenic | 50.0% |
| !!! | CAGCTTTGTTTTGCACACCG+AGG | + | chr4.3:4454391-4454410 | MS.gene55811:CDS | 50.0% |
| !!! | CTGTGCAGGTTTGGTTTTGG+GGG | - | chr4.3:4453576-4453595 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCACACCGAGG+TGG | + | chr4.3:4454394-4454413 | MS.gene55811:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4452086 | 4454424 | 4452086 | ID=MS.gene55811 |
| chr4.3 | mRNA | 4452086 | 4454424 | 4452086 | ID=MS.gene55811.t1;Parent=MS.gene55811 |
| chr4.3 | exon | 4452086 | 4452164 | 4452086 | ID=MS.gene55811.t1.exon1;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4452086 | 4452164 | 4452086 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4452542 | 4452624 | 4452542 | ID=MS.gene55811.t1.exon2;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4452542 | 4452624 | 4452542 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4452826 | 4452885 | 4452826 | ID=MS.gene55811.t1.exon3;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4452826 | 4452885 | 4452826 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4453091 | 4453199 | 4453091 | ID=MS.gene55811.t1.exon4;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4453091 | 4453199 | 4453091 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4453286 | 4453338 | 4453286 | ID=MS.gene55811.t1.exon5;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4453286 | 4453338 | 4453286 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4453952 | 4454032 | 4453952 | ID=MS.gene55811.t1.exon6;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4453952 | 4454032 | 4453952 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4454134 | 4454246 | 4454134 | ID=MS.gene55811.t1.exon7;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4454134 | 4454246 | 4454134 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| chr4.3 | exon | 4454370 | 4454424 | 4454370 | ID=MS.gene55811.t1.exon8;Parent=MS.gene55811.t1 |
| chr4.3 | CDS | 4454370 | 4454424 | 4454370 | ID=cds.MS.gene55811.t1;Parent=MS.gene55811.t1 |
| Gene Sequence |
| Protein sequence |
