Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55833.t1 | XP_024628370.1 | 98.3 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.10E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55833.t1 | Q8QZZ7 | 32.3 | 161 | 105 | 2 | 14 | 172 | 17 | 175 | 2.2e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55833.t1 | I3S9S0 | 98.3 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 2.3e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06114 | MS.gene55833 | 0.944204 | 3.00E-103 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55833.t1 | MTR_8g099835 | 100.000 | 148 | 0 | 0 | 25 | 172 | 5 | 152 | 1.46e-105 | 299 |
| MS.gene55833.t1 | MTR_2g105210 | 75.610 | 123 | 21 | 1 | 47 | 169 | 3 | 116 | 9.16e-58 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55833.t1 | AT4G34412 | 72.674 | 172 | 47 | 0 | 1 | 172 | 1 | 172 | 1.70e-86 | 251 |
Find 38 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCTTGCAGGGAACTAT+TGG | 0.280671 | 4.3:+4199297 | MS.gene55833:intron |
| TAAATACATAATTACATGTT+TGG | 0.329858 | 4.3:-4199681 | None:intergenic |
| GCTAGAACAGGGAAAATATC+TGG | 0.361800 | 4.3:-4199569 | None:intergenic |
| TCCAATGACGAGTTTCTCTA+TGG | 0.365136 | 4.3:-4199941 | None:intergenic |
| GAGAAAGACTAACTTTGAAT+TGG | 0.376103 | 4.3:-4197898 | None:intergenic |
| AAGATATCTGCCTTGGAACT+TGG | 0.384569 | 4.3:+4200102 | MS.gene55833:CDS |
| GCGTTGAGGAATGCAACTTC+TGG | 0.407224 | 4.3:-4199346 | None:intergenic |
| AAGCATGCAAGCTGGGACAT+TGG | 0.416752 | 4.3:+4199321 | MS.gene55833:CDS |
| CTCTCCCTTTCAGCTCCTCT+AGG | 0.421727 | 4.3:-4199975 | None:intergenic |
| TTGTGTGCAGCTGCTAGAAC+AGG | 0.422005 | 4.3:-4199581 | None:intergenic |
| GCCATAGAGAAACTCGTCAT+TGG | 0.436847 | 4.3:+4199940 | MS.gene55833:CDS |
| TAGAATCTTCTCACCTCATC+AGG | 0.444275 | 4.3:-4199844 | None:intergenic |
| AAGCATCACGAGCAGCTATT+CGG | 0.464580 | 4.3:-4200155 | None:intergenic |
| AAATCGAGCAGCAAGGATAT+AGG | 0.479316 | 4.3:-4199812 | None:intergenic |
| GCATTACAAGATATCTGCCT+TGG | 0.484266 | 4.3:+4200095 | MS.gene55833:intron |
| AAGCTCATCGACGACATCAA+TGG | 0.499776 | 4.3:+4197840 | MS.gene55833:CDS |
| TTGACCTAGAGGAGCTGAAA+GGG | 0.500088 | 4.3:+4199971 | MS.gene55833:CDS |
| GATGTCGTCGATGAGCTTCA+TGG | 0.510473 | 4.3:-4197835 | None:intergenic |
| TATTGGAAAGCATGCAAGCT+GGG | 0.540353 | 4.3:+4199314 | MS.gene55833:CDS |
| CTATTGGAAAGCATGCAAGC+TGG | 0.542148 | 4.3:+4199313 | MS.gene55833:CDS |
| AAACCTGCCCCAGATACAAA+AGG | 0.559565 | 4.3:+4199999 | MS.gene55833:CDS |
| GGTCAAAGAGTCCCGTGACT+TGG | 0.561465 | 4.3:-4199615 | None:intergenic |
| GAGCTCGTTTACAACTACTC+AGG | 0.561880 | 4.3:+4199656 | MS.gene55833:CDS |
| GACACTTGTAACCAAGTCAC+GGG | 0.585819 | 4.3:+4199604 | MS.gene55833:CDS |
| TGAGTAGTTGTAAACGAGCT+CGG | 0.589663 | 4.3:-4199654 | None:intergenic |
| ATTGACCTAGAGGAGCTGAA+AGG | 0.592410 | 4.3:+4199970 | MS.gene55833:CDS |
| TGATGATATTCCAAGTTCCA+AGG | 0.603203 | 4.3:-4200112 | None:intergenic |
| TGGAAAAGAGATTGACCTAG+AGG | 0.624141 | 4.3:+4199960 | MS.gene55833:CDS |
| AATTGGTGACGTCTGTGTAG+AGG | 0.624172 | 4.3:-4197881 | None:intergenic |
| AGACACTTGTAACCAAGTCA+CGG | 0.624915 | 4.3:+4199603 | MS.gene55833:CDS |
| ATTATACAAGTGAAGCGTTG+AGG | 0.626795 | 4.3:-4199360 | None:intergenic |
| AGCTCGTTTACAACTACTCA+GGG | 0.627963 | 4.3:+4199657 | MS.gene55833:CDS |
| ATTGGTGACGTCTGTGTAGA+GGG | 0.634042 | 4.3:-4197880 | None:intergenic |
| CTCGGAATGAAGAGTGCGTG+TGG | 0.636758 | 4.3:-4199636 | None:intergenic |
| ATTTGATGCTACTCCTGATG+AGG | 0.656826 | 4.3:+4199831 | MS.gene55833:CDS |
| TGTGTGCAGCTGCTAGAACA+GGG | 0.668610 | 4.3:-4199580 | None:intergenic |
| TAGCATCAAATCGAGCAGCA+AGG | 0.669820 | 4.3:-4199819 | None:intergenic |
| GTAGAGGGAGAGACAGAGAG+TGG | 0.695759 | 4.3:-4197865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATTAACTTAAAAC+GGG | - | chr4.3:4198094-4198113 | None:intergenic | 10.0% |
| !!! | TATTTATATTTAACTTGTTA+TGG | + | chr4.3:4199698-4199717 | MS.gene55833:intron | 10.0% |
| !! | AAAAAATTAAAAATTGGGTT+TGG | - | chr4.3:4198646-4198665 | None:intergenic | 15.0% |
| !! | TAAATACATAATTACATGTT+TGG | - | chr4.3:4199684-4199703 | None:intergenic | 15.0% |
| !!! | GAGAAAATGATAATTTTTAT+AGG | - | chr4.3:4197966-4197985 | None:intergenic | 15.0% |
| !! | AAATTATTGAATATGCTAGT+TGG | - | chr4.3:4200064-4200083 | None:intergenic | 20.0% |
| !! | ATAAGAGCAATATATGAATT+TGG | + | chr4.3:4198137-4198156 | MS.gene55833:intron | 20.0% |
| !! | TCAAGTAAGTTCTTTAAATT+TGG | - | chr4.3:4198186-4198205 | None:intergenic | 20.0% |
| !! | TGACAGTTTGAAAAATATTA+AGG | - | chr4.3:4198767-4198786 | None:intergenic | 20.0% |
| !! | TGTAATTGATCCATAAAATT+AGG | + | chr4.3:4199241-4199260 | MS.gene55833:intron | 20.0% |
| !!! | GTATATCTACTTTTATAGAT+TGG | - | chr4.3:4199189-4199208 | None:intergenic | 20.0% |
| ! | ATGTTCTATTGTTATACTTG+TGG | - | chr4.3:4198486-4198505 | None:intergenic | 25.0% |
| ! | CTGAAATTAGAAACTTTAAC+TGG | - | chr4.3:4199733-4199752 | None:intergenic | 25.0% |
| ! | GAAGATTCTACAGTAAAATA+TGG | + | chr4.3:4199857-4199876 | MS.gene55833:intron | 25.0% |
| ! | TATATGTAACTATGCAACAT+AGG | + | chr4.3:4198799-4198818 | MS.gene55833:intron | 25.0% |
| !! | ACTGAATCTTTAAAAAGATG+TGG | + | chr4.3:4199772-4199791 | MS.gene55833:CDS | 25.0% |
| !!! | GTAATATTTTCAAGTGTTAG+TGG | + | chr4.3:4198210-4198229 | MS.gene55833:intron | 25.0% |
| ACACTATAAATAAGAGCTCA+TGG | + | chr4.3:4198283-4198302 | MS.gene55833:intron | 30.0% | |
| ACTATGGTAAATGGTTATCA+GGG | + | chr4.3:4198903-4198922 | MS.gene55833:intron | 30.0% | |
| AGATCCTCTATAATTGAATG+TGG | - | chr4.3:4199396-4199415 | None:intergenic | 30.0% | |
| ATAACATGATCCTCTTATGT+CGG | + | chr4.3:4199441-4199460 | MS.gene55833:intron | 30.0% | |
| ATGTAACTATGTTTCTTGCA+GGG | + | chr4.3:4199288-4199307 | MS.gene55833:intron | 30.0% | |
| CAATTCACAAGAGAATATGT+AGG | + | chr4.3:4198335-4198354 | MS.gene55833:intron | 30.0% | |
| CACTCAATAGCAATATTTGA+TGG | - | chr4.3:4198949-4198968 | None:intergenic | 30.0% | |
| CCAAATGTTGTGAATAGTTA+TGG | - | chr4.3:4199055-4199074 | None:intergenic | 30.0% | |
| CCATAACTATTCACAACATT+TGG | + | chr4.3:4199052-4199071 | MS.gene55833:intron | 30.0% | |
| CTACATATTCTCTTGTGAAT+TGG | - | chr4.3:4198337-4198356 | None:intergenic | 30.0% | |
| GAGAAAGACTAACTTTGAAT+TGG | - | chr4.3:4197901-4197920 | None:intergenic | 30.0% | |
| GATCCTCTATAATTGAATGT+GGG | - | chr4.3:4199395-4199414 | None:intergenic | 30.0% | |
| GATGAGAAACACTTAATTCT+CGG | - | chr4.3:4198072-4198091 | None:intergenic | 30.0% | |
| GGAGAAATTATAGGAACATT+TGG | + | chr4.3:4198236-4198255 | MS.gene55833:intron | 30.0% | |
| TATAAATAAGAGCTCATGGA+TGG | + | chr4.3:4198287-4198306 | MS.gene55833:intron | 30.0% | |
| TATACTTGTGGTAAGTACAA+GGG | - | chr4.3:4198474-4198493 | None:intergenic | 30.0% | |
| TATGTAACTATGTTTCTTGC+AGG | + | chr4.3:4199287-4199306 | MS.gene55833:intron | 30.0% | |
| TTATACTTGTGGTAAGTACA+AGG | - | chr4.3:4198475-4198494 | None:intergenic | 30.0% | |
| ! | ATGAGCTCTTATTTATAGTG+TGG | - | chr4.3:4198284-4198303 | None:intergenic | 30.0% |
| !!! | AACTGACTTTTGAGATTAAG+TGG | - | chr4.3:4198982-4199001 | None:intergenic | 30.0% |
| !!! | ACTTTTTCACTTCTTTGGTA+TGG | + | chr4.3:4198879-4198898 | MS.gene55833:intron | 30.0% |
| !!! | TCAACACTTTTTCACTTCTT+TGG | + | chr4.3:4198874-4198893 | MS.gene55833:intron | 30.0% |
| ACATAGGATAACTATCAACG+AGG | + | chr4.3:4198815-4198834 | MS.gene55833:intron | 35.0% | |
| ATACAAGTCCTAGCATCATT+CGG | - | chr4.3:4199479-4199498 | None:intergenic | 35.0% | |
| ATGTAGCTAATCCCATTTAG+TGG | + | chr4.3:4198524-4198543 | MS.gene55833:intron | 35.0% | |
| CACTATGGTAAATGGTTATC+AGG | + | chr4.3:4198902-4198921 | MS.gene55833:intron | 35.0% | |
| CAGATACAAAAGGTTTGTCA+GGG | + | chr4.3:4200009-4200028 | MS.gene55833:intron | 35.0% | |
| TATGCTAGTTGGCACAAAAA+AGG | - | chr4.3:4200053-4200072 | None:intergenic | 35.0% | |
| TGACCCACATTCAATTATAG+AGG | + | chr4.3:4199389-4199408 | MS.gene55833:intron | 35.0% | |
| TGATGATATTCCAAGTTCCA+AGG | - | chr4.3:4200115-4200134 | None:intergenic | 35.0% | |
| TGTAGCTAATCCCATTTAGT+GGG | + | chr4.3:4198525-4198544 | MS.gene55833:intron | 35.0% | |
| TTATAGTGTGGAGAGTTAGT+GGG | - | chr4.3:4198272-4198291 | None:intergenic | 35.0% | |
| TTTATAGTGTGGAGAGTTAG+TGG | - | chr4.3:4198273-4198292 | None:intergenic | 35.0% | |
| ! | CAAGTCTTATCCCACTAAAT+GGG | - | chr4.3:4198538-4198557 | None:intergenic | 35.0% |
| ! | CTGACAAACCTTTTGTATCT+GGG | - | chr4.3:4200010-4200029 | None:intergenic | 35.0% |
| ! | TGACAAACCTTTTGTATCTG+GGG | - | chr4.3:4200009-4200028 | None:intergenic | 35.0% |
| ! | TTATCATTTTCTCTTACCGC+CGG | + | chr4.3:4197973-4197992 | MS.gene55833:intron | 35.0% |
| !! | AGAGCTGGTTCCTAATTTTA+TGG | - | chr4.3:4199254-4199273 | None:intergenic | 35.0% |
| !! | ATTATACAAGTGAAGCGTTG+AGG | - | chr4.3:4199363-4199382 | None:intergenic | 35.0% |
| !! | TAGTGGACTGGAGAAATTAT+AGG | + | chr4.3:4198227-4198246 | MS.gene55833:intron | 35.0% |
| !!! | ATTTTCAAGTGTTAGTGGAC+TGG | + | chr4.3:4198215-4198234 | MS.gene55833:intron | 35.0% |
| !!! | GTTGCTTTGCATTTTTAGTC+CGG | + | chr4.3:4198027-4198046 | MS.gene55833:intron | 35.0% |
| AAATCGAGCAGCAAGGATAT+AGG | - | chr4.3:4199815-4199834 | None:intergenic | 40.0% | |
| AAGATATCTGCCTTGGAACT+TGG | + | chr4.3:4200102-4200121 | MS.gene55833:CDS | 40.0% | |
| ACAAGAGAATATGTAGGACG+AGG | + | chr4.3:4198341-4198360 | MS.gene55833:intron | 40.0% | |
| ACTGAAGCAATACAGTAAGC+CGG | - | chr4.3:4197995-4198014 | None:intergenic | 40.0% | |
| ACTTAATTCTCGGTCTGGAT+TGG | - | chr4.3:4198062-4198081 | None:intergenic | 40.0% | |
| ACTTCTTTGGTATGGCACTA+TGG | + | chr4.3:4198887-4198906 | MS.gene55833:intron | 40.0% | |
| AGACACTTGTAACCAAGTCA+CGG | + | chr4.3:4199603-4199622 | MS.gene55833:CDS | 40.0% | |
| AGCTCGTTTACAACTACTCA+GGG | + | chr4.3:4199657-4199676 | MS.gene55833:CDS | 40.0% | |
| ATTTGATGCTACTCCTGATG+AGG | + | chr4.3:4199831-4199850 | MS.gene55833:CDS | 40.0% | |
| CAAGAGAATATGTAGGACGA+GGG | + | chr4.3:4198342-4198361 | MS.gene55833:intron | 40.0% | |
| CCAGATACAAAAGGTTTGTC+AGG | + | chr4.3:4200008-4200027 | MS.gene55833:intron | 40.0% | |
| CCATCTTGATTAGGAGGAAT+CGG | - | chr4.3:4199130-4199149 | None:intergenic | 40.0% | |
| CCATTTAGTGGGATAAGACT+TGG | + | chr4.3:4198536-4198555 | MS.gene55833:intron | 40.0% | |
| GAAACACTTAATTCTCGGTC+TGG | - | chr4.3:4198067-4198086 | None:intergenic | 40.0% | |
| GCATTACAAGATATCTGCCT+TGG | + | chr4.3:4200095-4200114 | MS.gene55833:intron | 40.0% | |
| GCTAGAACAGGGAAAATATC+TGG | - | chr4.3:4199572-4199591 | None:intergenic | 40.0% | |
| TAAACACTTCAGCTAAGAGC+TGG | - | chr4.3:4199269-4199288 | None:intergenic | 40.0% | |
| TAGAATCTTCTCACCTCATC+AGG | - | chr4.3:4199847-4199866 | None:intergenic | 40.0% | |
| TCCAATGACGAGTTTCTCTA+TGG | - | chr4.3:4199944-4199963 | None:intergenic | 40.0% | |
| TCTCTCATTACCGACATAAG+AGG | - | chr4.3:4199454-4199473 | None:intergenic | 40.0% | |
| TGAGTAGTTGTAAACGAGCT+CGG | - | chr4.3:4199657-4199676 | None:intergenic | 40.0% | |
| TGGAAAAGAGATTGACCTAG+AGG | + | chr4.3:4199960-4199979 | MS.gene55833:CDS | 40.0% | |
| TGGTATGGCACTATGGTAAA+TGG | + | chr4.3:4198894-4198913 | MS.gene55833:intron | 40.0% | |
| TGTTTCTTGCAGGGAACTAT+TGG | + | chr4.3:4199297-4199316 | MS.gene55833:intron | 40.0% | |
| TTGCAATCGCCATCTTGATT+AGG | - | chr4.3:4199139-4199158 | None:intergenic | 40.0% | |
| ! | CAGGGAAAATATCTGGAATC+TGG | - | chr4.3:4199565-4199584 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCCCACTAAA+TGG | - | chr4.3:4198539-4198558 | None:intergenic | 40.0% |
| ! | CCTGACAAACCTTTTGTATC+TGG | - | chr4.3:4200011-4200030 | None:intergenic | 40.0% |
| ! | TATTGGAAAGCATGCAAGCT+GGG | + | chr4.3:4199314-4199333 | MS.gene55833:CDS | 40.0% |
| !! | CTATTCACAACATTTGGTGC+TGG | + | chr4.3:4199058-4199077 | MS.gene55833:intron | 40.0% |
| !!! | ATTTTGATTGTAGCGCGACA+GGG | - | chr4.3:4198372-4198391 | None:intergenic | 40.0% |
| !!! | TATTTTGATTGTAGCGCGAC+AGG | - | chr4.3:4198373-4198392 | None:intergenic | 40.0% |
| !!! | TTTGCATTTTTAGTCCGGAC+TGG | + | chr4.3:4198032-4198051 | MS.gene55833:intron | 40.0% |
| AAACCTGCCCCAGATACAAA+AGG | + | chr4.3:4199999-4200018 | MS.gene55833:CDS | 45.0% | |
| AAGCATCACGAGCAGCTATT+CGG | - | chr4.3:4200158-4200177 | None:intergenic | 45.0% | |
| AAGCTCATCGACGACATCAA+TGG | + | chr4.3:4197840-4197859 | MS.gene55833:CDS | 45.0% | |
| ATTGACCTAGAGGAGCTGAA+AGG | + | chr4.3:4199970-4199989 | MS.gene55833:CDS | 45.0% | |
| CAATCGCCATCTTGATTAGG+AGG | - | chr4.3:4199136-4199155 | None:intergenic | 45.0% | |
| CCGATTCCTCCTAATCAAGA+TGG | + | chr4.3:4199127-4199146 | MS.gene55833:intron | 45.0% | |
| CTCTTGTGAATTGGCGATGT+GGG | - | chr4.3:4198328-4198347 | None:intergenic | 45.0% | |
| GACACTTGTAACCAAGTCAC+GGG | + | chr4.3:4199604-4199623 | MS.gene55833:CDS | 45.0% | |
| GAGAGAATCCGAATGATGCT+AGG | + | chr4.3:4199468-4199487 | MS.gene55833:intron | 45.0% | |
| GAGCTCGTTTACAACTACTC+AGG | + | chr4.3:4199656-4199675 | MS.gene55833:CDS | 45.0% | |
| GATTAGGAGGAATCGGCATA+CGG | - | chr4.3:4199123-4199142 | None:intergenic | 45.0% | |
| GCCATAGAGAAACTCGTCAT+TGG | + | chr4.3:4199940-4199959 | MS.gene55833:CDS | 45.0% | |
| TAGCATCAAATCGAGCAGCA+AGG | - | chr4.3:4199822-4199841 | None:intergenic | 45.0% | |
| TCTCTTGTGAATTGGCGATG+TGG | - | chr4.3:4198329-4198348 | None:intergenic | 45.0% | |
| TCTTGTGAATTGGCGATGTG+GGG | - | chr4.3:4198327-4198346 | None:intergenic | 45.0% | |
| TTGACCTAGAGGAGCTGAAA+GGG | + | chr4.3:4199971-4199990 | MS.gene55833:CDS | 45.0% | |
| ! | CTATTGGAAAGCATGCAAGC+TGG | + | chr4.3:4199313-4199332 | MS.gene55833:CDS | 45.0% |
| ! | GCTTTGAGCTAAAGGGATCT+TGG | - | chr4.3:4198419-4198438 | None:intergenic | 45.0% |
| !! | AAACCTTTTGTATCTGGGGC+AGG | - | chr4.3:4200005-4200024 | None:intergenic | 45.0% |
| !! | AATTGGTGACGTCTGTGTAG+AGG | - | chr4.3:4197884-4197903 | None:intergenic | 45.0% |
| !! | ATTGGTGACGTCTGTGTAGA+GGG | - | chr4.3:4197883-4197902 | None:intergenic | 45.0% |
| !! | GAGAGGAGCTTTGAGCTAAA+GGG | - | chr4.3:4198426-4198445 | None:intergenic | 45.0% |
| !! | GGGAGTGTGCTTGATTTTAG+TGG | + | chr4.3:4198923-4198942 | MS.gene55833:intron | 45.0% |
| !! | TGAGAGGAGCTTTGAGCTAA+AGG | - | chr4.3:4198427-4198446 | None:intergenic | 45.0% |
| !! | AAGTTTAAAAAATTAAAAAT+TGG | - | chr4.3:4198652-4198671 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAATTAAAAATT+GGG | - | chr4.3:4198651-4198670 | None:intergenic | 5.0% |
| !! | TAATAATAATTAACTTAAAA+CGG | - | chr4.3:4198095-4198114 | None:intergenic | 5.0% |
| AAAGCTCCTCTCACCACCAA+GGG | + | chr4.3:4198434-4198453 | MS.gene55833:intron | 50.0% | |
| AAGCATGCAAGCTGGGACAT+TGG | + | chr4.3:4199321-4199340 | MS.gene55833:CDS | 50.0% | |
| CAGCAGTGAGCAGTAAGGTT+GGG | - | chr4.3:4198396-4198415 | None:intergenic | 50.0% | |
| GAAGCAATACAGTAAGCCGG+CGG | - | chr4.3:4197992-4198011 | None:intergenic | 50.0% | |
| GCGTTGAGGAATGCAACTTC+TGG | - | chr4.3:4199349-4199368 | None:intergenic | 50.0% | |
| TCTGGTGCAGTTGAGAACAG+TGG | - | chr4.3:4199547-4199566 | None:intergenic | 50.0% | |
| TGTGTGCAGCTGCTAGAACA+GGG | - | chr4.3:4199583-4199602 | None:intergenic | 50.0% | |
| TTGTGTGCAGCTGCTAGAAC+AGG | - | chr4.3:4199584-4199603 | None:intergenic | 50.0% | |
| !! | AATTCTCGGTCTGGATTGGC+CGG | - | chr4.3:4198058-4198077 | None:intergenic | 50.0% |
| !!! | CATTTTTAGTCCGGACTGGC+CGG | + | chr4.3:4198036-4198055 | MS.gene55833:intron | 50.0% |
| AAGCTCCTCTCACCACCAAG+GGG | + | chr4.3:4198435-4198454 | MS.gene55833:intron | 55.0% | |
| CAAAGCTCCTCTCACCACCA+AGG | + | chr4.3:4198433-4198452 | MS.gene55833:intron | 55.0% | |
| CTCTCCCTTTCAGCTCCTCT+AGG | - | chr4.3:4199978-4199997 | None:intergenic | 55.0% | |
| CTTGGCAGCAGTGAGCAGTA+AGG | - | chr4.3:4198401-4198420 | None:intergenic | 55.0% | |
| GAGAGTTAGTGGGAGTGGTG+AGG | - | chr4.3:4198262-4198281 | None:intergenic | 55.0% | |
| GCAGCAGTGAGCAGTAAGGT+TGG | - | chr4.3:4198397-4198416 | None:intergenic | 55.0% | |
| GGTCAAAGAGTCCCGTGACT+TGG | - | chr4.3:4199618-4199637 | None:intergenic | 55.0% | |
| GTAGAGGGAGAGACAGAGAG+TGG | - | chr4.3:4197868-4197887 | None:intergenic | 55.0% | |
| GTGTGGAGAGTTAGTGGGAG+TGG | - | chr4.3:4198267-4198286 | None:intergenic | 55.0% | |
| TTGATTGTAGCGCGACAGGG+AGG | - | chr4.3:4198369-4198388 | None:intergenic | 55.0% | |
| ! | CTCGGAATGAAGAGTGCGTG+TGG | - | chr4.3:4199639-4199658 | None:intergenic | 55.0% |
| AGCTCCTCTCACCACCAAGG+GGG | + | chr4.3:4198436-4198455 | MS.gene55833:intron | 60.0% | |
| CCTCTCACCACCAAGGGGGA+GGG | + | chr4.3:4198440-4198459 | MS.gene55833:intron | 65.0% | |
| CTCTCACCACCAAGGGGGAG+GGG | + | chr4.3:4198441-4198460 | MS.gene55833:intron | 65.0% | |
| TCCTCTCACCACCAAGGGGG+AGG | + | chr4.3:4198439-4198458 | MS.gene55833:intron | 65.0% | |
| TCTCACCACCAAGGGGGAGG+GGG | + | chr4.3:4198442-4198461 | MS.gene55833:intron | 65.0% | |
| !! | TCTGGATTGGCCGGCCAGTC+CGG | - | chr4.3:4198049-4198068 | None:intergenic | 65.0% |
| ATCGACCCCCTCCCCCTTGG+TGG | - | chr4.3:4198450-4198469 | None:intergenic | 70.0% | |
| !! | CCCTCCCCCTTGGTGGTGAG+AGG | - | chr4.3:4198443-4198462 | None:intergenic | 70.0% |
| !! | GGCATCGACCCCCTCCCCCT+TGG | - | chr4.3:4198453-4198472 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4197837 | 4200182 | 4197837 | ID=MS.gene55833 |
| chr4.3 | mRNA | 4197837 | 4200182 | 4197837 | ID=MS.gene55833.t1;Parent=MS.gene55833 |
| chr4.3 | exon | 4197837 | 4197907 | 4197837 | ID=MS.gene55833.t1.exon1;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4197837 | 4197907 | 4197837 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| chr4.3 | exon | 4199309 | 4199375 | 4199309 | ID=MS.gene55833.t1.exon2;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4199309 | 4199375 | 4199309 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| chr4.3 | exon | 4199566 | 4199688 | 4199566 | ID=MS.gene55833.t1.exon3;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4199566 | 4199688 | 4199566 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| chr4.3 | exon | 4199769 | 4199852 | 4199769 | ID=MS.gene55833.t1.exon4;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4199769 | 4199852 | 4199769 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| chr4.3 | exon | 4199934 | 4200020 | 4199934 | ID=MS.gene55833.t1.exon5;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4199934 | 4200020 | 4199934 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| chr4.3 | exon | 4200096 | 4200182 | 4200096 | ID=MS.gene55833.t1.exon6;Parent=MS.gene55833.t1 |
| chr4.3 | CDS | 4200096 | 4200182 | 4200096 | ID=cds.MS.gene55833.t1;Parent=MS.gene55833.t1 |
| Gene Sequence |
| Protein sequence |
