Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55846.t1 | XP_013447274.1 | 99.7 | 1182 | 4 | 0 | 1 | 1182 | 1 | 1182 | 0.00E+00 | 2209.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55846.t1 | Q54TB8 | 24.5 | 286 | 175 | 9 | 83 | 364 | 41 | 289 | 3.0e-08 | 62.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55846.t1 | A0A072TVW4 | 99.7 | 1182 | 4 | 0 | 1 | 1182 | 1 | 1182 | 0.0e+00 | 2209.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056700 | MS.gene55846 | 0.809743 | 1.63E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55846.t1 | MTR_8g100105 | 99.662 | 1182 | 4 | 0 | 1 | 1182 | 1 | 1182 | 0.0 | 2407 |
MS.gene55846.t1 | MTR_8g100105 | 99.239 | 1182 | 4 | 1 | 1 | 1182 | 1 | 1177 | 0.0 | 2389 |
MS.gene55846.t1 | MTR_8g100105 | 98.273 | 1158 | 13 | 1 | 1 | 1158 | 1 | 1151 | 0.0 | 2311 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55846.t1 | AT2G07360 | 77.171 | 1209 | 236 | 13 | 1 | 1182 | 1 | 1196 | 0.0 | 1829 |
MS.gene55846.t1 | AT2G07360 | 77.126 | 1211 | 235 | 14 | 1 | 1182 | 1 | 1198 | 0.0 | 1825 |
Find 303 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGATCTGGTGAACCTTTC+AGG | 0.130798 | 4.3:-4007418 | MS.gene55846:CDS |
TTAATAATTCAGTACCTTAT+TGG | 0.145614 | 4.3:+4006994 | None:intergenic |
GCATTAGGTAAACGAATTTC+TGG | 0.180162 | 4.3:-4005028 | MS.gene55846:intron |
GCGGGATACCCACCCCTAAT+TGG | 0.209371 | 4.3:-4019742 | MS.gene55846:CDS |
AGGACTGAGGAGCGTGCTTC+TGG | 0.219446 | 4.3:-4013723 | MS.gene55846:CDS |
CTCAGCAGCAGCTGGTGTTT+TGG | 0.230689 | 4.3:+4005356 | None:intergenic |
TCATCTGGAAATCCACAATT+TGG | 0.233818 | 4.3:-4004197 | MS.gene55846:CDS |
AACTTTAGTTGCAAATATTC+TGG | 0.251081 | 4.3:+4008455 | None:intergenic |
AGATTGTACGAAATTGTATT+TGG | 0.253370 | 4.3:-4018790 | MS.gene55846:CDS |
ACATCAATATCATCCCATTT+TGG | 0.255264 | 4.3:-4004742 | MS.gene55846:CDS |
TTTGAAGGCTTCTCCGGATA+TGG | 0.259514 | 4.3:-4008499 | MS.gene55846:intron |
CTTTGCATGCCAGGAGAGTA+TGG | 0.260877 | 4.3:+4004293 | None:intergenic |
TCAGCCAGAGCATCCCAATT+AGG | 0.280359 | 4.3:+4019728 | None:intergenic |
GGTAGCTCATTCCACCAAAA+TGG | 0.287186 | 4.3:+4004728 | None:intergenic |
GGGTATGTTGGCTTCATTAA+TGG | 0.294750 | 4.3:-4012638 | MS.gene55846:CDS |
CGATTTATGCAGGACTCTTC+CGG | 0.309176 | 4.3:-4020776 | MS.gene55846:intron |
TTTATTAAGTCCTATGATAA+AGG | 0.310031 | 4.3:-4007279 | MS.gene55846:CDS |
GAATTATAAACTGCAAGTTT+TGG | 0.314073 | 4.3:+4020134 | None:intergenic |
CAGCCAGAGCATCCCAATTA+GGG | 0.324396 | 4.3:+4019729 | None:intergenic |
TGTAGAAATGCTGGATTTCC+AGG | 0.327121 | 4.3:+4016397 | None:intergenic |
ATATTCTCCTCGTCAACGTC+TGG | 0.328261 | 4.3:+4004985 | None:intergenic |
CGCCGATCCAACTCCGTTGC+CGG | 0.344088 | 4.3:-4020729 | MS.gene55846:CDS |
CAGATCCATTAGCGTGGTTC+CGG | 0.346035 | 4.3:+4020757 | None:intergenic |
TCCCGTAATCCTACTCTTGC+TGG | 0.348755 | 4.3:-4007781 | MS.gene55846:CDS |
TAATTCTGTGGATCCTTCAT+TGG | 0.349201 | 4.3:-4020117 | MS.gene55846:CDS |
TCAACTGATCCAGTTGAATC+TGG | 0.352645 | 4.3:+4004766 | None:intergenic |
CAGACTTGTCTTGTTGGAGC+TGG | 0.352694 | 4.3:-4008179 | MS.gene55846:CDS |
CCCTCTATTTATGAGGGTCT+TGG | 0.357476 | 4.3:-4004414 | MS.gene55846:CDS |
AAGTCCTATGATAAAGGTTC+TGG | 0.365932 | 4.3:-4007273 | MS.gene55846:CDS |
TATGCTGTTGCAATGGCCTT+AGG | 0.366166 | 4.3:-4014754 | MS.gene55846:intron |
AGTTCATCAAATGAGTCAAT+TGG | 0.366179 | 4.3:+4012535 | None:intergenic |
CTTCAGAGGTGTGCATTCAT+TGG | 0.366681 | 4.3:-4007745 | MS.gene55846:CDS |
CAGGATTTCATCTGCTGATC+CGG | 0.374152 | 4.3:-4014830 | MS.gene55846:CDS |
ATGATACACCAGCAATGAAT+AGG | 0.376094 | 4.3:-4005281 | MS.gene55846:CDS |
CTCTTGCTGGTGCCTTGACC+AGG | 0.377640 | 4.3:-4007768 | MS.gene55846:CDS |
AGCAGATTCCCAAGCATATT+CGG | 0.378150 | 4.3:+4007864 | None:intergenic |
AAGGCCATTGCAACAGCATA+AGG | 0.379690 | 4.3:+4014757 | None:intergenic |
GCGATATGTCTATTACTATC+TGG | 0.380471 | 4.3:-4019810 | MS.gene55846:CDS |
ACCAAGACCCTCATAAATAG+AGG | 0.383711 | 4.3:+4004413 | None:intergenic |
GGCAGGGATGGCAAGATGGC+TGG | 0.383770 | 4.3:-4003569 | MS.gene55846:CDS |
AGTTCACGGCCCAATTCATA+TGG | 0.387103 | 4.3:-4004694 | MS.gene55846:CDS |
CAAGGTCTAGCAGCCTTTCA+TGG | 0.388295 | 4.3:+4007064 | None:intergenic |
GATTGATTAACATACAAAAC+AGG | 0.389043 | 4.3:+4003539 | None:intergenic |
ACATTCTACATCAGCATTTG+TGG | 0.389142 | 4.3:+4019634 | None:intergenic |
ATCTACCATTGGGTCCAATA+AGG | 0.393377 | 4.3:-4007008 | MS.gene55846:intron |
ACATCAGCATCAACCTTTCC+TGG | 0.393454 | 4.3:+4008432 | None:intergenic |
TTGAACTGGGATCTAATATC+TGG | 0.394420 | 4.3:+4013978 | None:intergenic |
CTCTTCCGGAACCACGCTAA+TGG | 0.395108 | 4.3:-4020762 | MS.gene55846:CDS |
GATAGAGCACTGTATTGAAC+TGG | 0.395803 | 4.3:+4013964 | None:intergenic |
CACCAGCAAGAGTAGGATTA+CGG | 0.396943 | 4.3:+4007779 | None:intergenic |
CGGGATACCCACCCCTAATT+GGG | 0.402516 | 4.3:-4019741 | MS.gene55846:CDS |
ACCAGTGTCAGATAAAATTC+TGG | 0.406331 | 4.3:+4019787 | None:intergenic |
ATTGGCTCCTTCTCTTCTCA+TGG | 0.408815 | 4.3:-4020099 | MS.gene55846:intron |
TTGTGATGCTCCATATGAAT+TGG | 0.411593 | 4.3:+4004684 | None:intergenic |
GGACTGAGGAGCGTGCTTCT+GGG | 0.411679 | 4.3:-4013722 | MS.gene55846:CDS |
ATTCATACCCTATTCATTGC+TGG | 0.411815 | 4.3:+4005273 | None:intergenic |
ATATTTGCAACTAAAGTTCC+AGG | 0.412516 | 4.3:-4008450 | MS.gene55846:CDS |
TGCTTTCGCTGTGGGCATAC+AGG | 0.414514 | 4.3:-4013361 | MS.gene55846:CDS |
AAGCGAAAGAAAGGCATACT+TGG | 0.415420 | 4.3:-4018051 | MS.gene55846:CDS |
GGAAGATGATGCGAAGTCAT+TGG | 0.419718 | 4.3:-4004800 | MS.gene55846:CDS |
CACAATATTAGTGCATCAAC+TGG | 0.420225 | 4.3:-4005432 | MS.gene55846:CDS |
CTCAAAACAGACTCTTTCAC+TGG | 0.420259 | 4.3:+4013926 | None:intergenic |
CACCCCTAATTGGGATGCTC+TGG | 0.420630 | 4.3:-4019732 | MS.gene55846:CDS |
CTTTCCTTCGATGATGCATC+TGG | 0.422614 | 4.3:+4013666 | None:intergenic |
ATAGTTCAGTTACCTTAAAA+CGG | 0.425579 | 4.3:+4012431 | None:intergenic |
CTTGTTGGAGCTGGTCCTGA+TGG | 0.425701 | 4.3:-4008170 | MS.gene55846:CDS |
TTTGTCTTTGAAGGCTTCTC+CGG | 0.427908 | 4.3:-4008505 | MS.gene55846:intron |
TCGGAGACTGCAATCCTTGA+AGG | 0.429909 | 4.3:-4018854 | MS.gene55846:CDS |
TCATTTGAGAATCCCTTAGC+TGG | 0.430514 | 4.3:-4004263 | MS.gene55846:CDS |
TGCTGCTTCCGAATATGCTT+GGG | 0.430878 | 4.3:-4007872 | MS.gene55846:CDS |
GGTTCCCAAGGTTTGAGCTC+TGG | 0.431409 | 4.3:-4019767 | MS.gene55846:CDS |
GAGGATGAACGAATTTCATC+TGG | 0.431957 | 4.3:-4004212 | MS.gene55846:CDS |
AAAGCTTTATGTTTCCCATC+AGG | 0.432665 | 4.3:+4008155 | None:intergenic |
TGCAGCAGCTAGAGTTGTAC+AGG | 0.434117 | 4.3:-4013406 | MS.gene55846:CDS |
CGCCACCAGAGCTCAAACCT+TGG | 0.434158 | 4.3:+4019762 | None:intergenic |
TTATGAGGGTCTTGGTTCTC+CGG | 0.435066 | 4.3:-4004406 | MS.gene55846:intron |
CACTAATATTGTGGCGTGTA+CGG | 0.435266 | 4.3:+4005442 | None:intergenic |
GCAAGTTGTGAATACGAAAC+TGG | 0.436238 | 4.3:+4020329 | None:intergenic |
TCATCCAGAACCTTTATCAT+AGG | 0.440070 | 4.3:+4007269 | None:intergenic |
TGGGAATCTGCTACCCCTCC+TGG | 0.440912 | 4.3:-4007853 | MS.gene55846:CDS |
GATTCGAATCATTGCTGCTC+AGG | 0.441734 | 4.3:-4007459 | MS.gene55846:CDS |
AAATACAATTTCGTACAATC+TGG | 0.444054 | 4.3:+4018792 | None:intergenic |
AATGGTAGATACTTTGCTCT+TGG | 0.444908 | 4.3:+4007021 | None:intergenic |
CTGGGTGGTACCGTTTGACC+AGG | 0.446745 | 4.3:-4013704 | MS.gene55846:CDS |
CTGATGTGCATCTTAGCAAT+GGG | 0.447109 | 4.3:-4007337 | MS.gene55846:CDS |
GACAAGGCTGGCCGAGGTAG+CGG | 0.447537 | 4.3:-4004438 | MS.gene55846:CDS |
TCGAGAGCTAGATCTTTAGA+TGG | 0.447647 | 4.3:-4014096 | MS.gene55846:intron |
ATAAAATAACATTACTTTCA+GGG | 0.447690 | 4.3:+4013265 | None:intergenic |
GATCAAGGAGCAAGTGGTAC+AGG | 0.448271 | 4.3:-4007311 | MS.gene55846:CDS |
TGTAATGCAAGAGCTGACTT+TGG | 0.448725 | 4.3:+4008041 | None:intergenic |
TGTGATGCTCCATATGAATT+GGG | 0.450841 | 4.3:+4004685 | None:intergenic |
AGGAGCAAGTGGTACAGGCC+TGG | 0.451051 | 4.3:-4007306 | MS.gene55846:CDS |
TGGTGATCAAGGCATTAATC+TGG | 0.451951 | 4.3:-4012567 | MS.gene55846:CDS |
ATATCATCATAGCTAATAGA+AGG | 0.452525 | 4.3:+4004952 | None:intergenic |
GAGATTGAGTACGAAGTAGA+TGG | 0.452803 | 4.3:-4003752 | MS.gene55846:CDS |
TCATCATCTCCAGATTCAAC+TGG | 0.454367 | 4.3:-4004775 | MS.gene55846:CDS |
GAAGATGATGCGAAGTCATT+GGG | 0.454992 | 4.3:-4004799 | MS.gene55846:CDS |
CGGGCCGCTGCTTTCGCTGT+GGG | 0.456700 | 4.3:-4013369 | MS.gene55846:CDS |
GGATGGCAAGATGGCTGGAC+TGG | 0.458867 | 4.3:-4003564 | MS.gene55846:CDS |
TAGTTCAGTTACCTTAAAAC+GGG | 0.459095 | 4.3:+4012432 | None:intergenic |
AGAGCATTCCTCACAGCAAC+CGG | 0.460875 | 4.3:+4014811 | None:intergenic |
AACGAATTTCTGGCGGGTGC+AGG | 0.462504 | 4.3:-4005018 | MS.gene55846:CDS |
TAGCAAGAACATCGTGCAAA+TGG | 0.462573 | 4.3:+4014151 | None:intergenic |
GCCATCTTGCCATCCCTGCC+AGG | 0.462668 | 4.3:+4003572 | None:intergenic |
ATGCTGCTTCCGAATATGCT+TGG | 0.462847 | 4.3:-4007873 | MS.gene55846:CDS |
GTTCATCAAATGAGTCAATT+GGG | 0.463005 | 4.3:+4012536 | None:intergenic |
ACCCTTCACTGTTCAGTTCA+CGG | 0.464278 | 4.3:-4004708 | MS.gene55846:CDS |
GCTGGTAGAGATACCATTGC+GGG | 0.465161 | 4.3:-4012658 | MS.gene55846:CDS |
AAAAGAGCTGCTGACCAAGC+TGG | 0.469461 | 4.3:+4012481 | None:intergenic |
AGAAGACTCCCTCTAGATCC+TGG | 0.469587 | 4.3:-4016415 | MS.gene55846:CDS |
GGAGCAAGTGGTACAGGCCT+GGG | 0.471316 | 4.3:-4007305 | MS.gene55846:CDS |
GCATCAGGCTCAGCAGCAGC+TGG | 0.471598 | 4.3:+4005348 | None:intergenic |
AGCTAGAGTTGTACAGGAGA+TGG | 0.472011 | 4.3:-4013400 | MS.gene55846:CDS |
AGGTCATCATCAAGGGCATC+AGG | 0.475537 | 4.3:+4005333 | None:intergenic |
ATAGATCCTGGTTGTGGAGG+TGG | 0.475938 | 4.3:+4008104 | None:intergenic |
ACATCTCAATCTTCAACGTT+AGG | 0.476740 | 4.3:-4020656 | MS.gene55846:CDS |
ATCTCTACCAGCAGTTCCAT+TGG | 0.478504 | 4.3:+4012669 | None:intergenic |
GTGCCTTGACCAGGCTTCAG+AGG | 0.478650 | 4.3:-4007759 | MS.gene55846:CDS |
TAGCATATTGTAGATTGCTT+CGG | 0.481952 | 4.3:+4016452 | None:intergenic |
ACGAGATCCCGTCCCAGCTA+AGG | 0.483990 | 4.3:+4004250 | None:intergenic |
TTTCTACATTATGCGGTACT+CGG | 0.484089 | 4.3:-4016382 | MS.gene55846:CDS |
CTGAGCTGTTTAATTATTCG+CGG | 0.484298 | 4.3:+4019665 | None:intergenic |
ACCAGCAAGAGTAGGATTAC+GGG | 0.485700 | 4.3:+4007780 | None:intergenic |
GATATACCAGTGGCAACAGC+TGG | 0.487463 | 4.3:+4005399 | None:intergenic |
TAAAGTGCACTTCCAAATTG+TGG | 0.490386 | 4.3:+4004185 | None:intergenic |
ACCGCATAATGTAGAAATGC+TGG | 0.491048 | 4.3:+4016388 | None:intergenic |
CTGATGTGCTACAACTACTT+TGG | 0.492226 | 4.3:-4008416 | MS.gene55846:CDS |
GATTCATTTCTTTGCATGCC+AGG | 0.493560 | 4.3:+4004284 | None:intergenic |
TTAAGAAGAAACGTCCTGGC+AGG | 0.493979 | 4.3:-4003586 | MS.gene55846:CDS |
ACTAGCTGCTACTTCTGATC+AGG | 0.494331 | 4.3:-4020291 | MS.gene55846:intron |
AGCATATGTAAGCGCCTTCA+AGG | 0.496924 | 4.3:+4018840 | None:intergenic |
GTTGGCTTCATTAATGGAAG+TGG | 0.497905 | 4.3:-4012632 | MS.gene55846:CDS |
TAGCGGTCCCTCTATTTATG+AGG | 0.498125 | 4.3:-4004421 | MS.gene55846:CDS |
GCCACCAGAGCTCAAACCTT+GGG | 0.498236 | 4.3:+4019763 | None:intergenic |
CCTTCGCAAAAGCGAAAGAA+AGG | 0.499168 | 4.3:-4018060 | MS.gene55846:CDS |
CAAGGTTTGAGCTCTGGTGG+CGG | 0.499594 | 4.3:-4019761 | MS.gene55846:CDS |
TATTCTCCTCGTCAACGTCT+GGG | 0.499727 | 4.3:+4004986 | None:intergenic |
GATGACGCCGGCAACGGAGT+TGG | 0.502111 | 4.3:+4020722 | None:intergenic |
TCAGTATCCAATGGAACTGC+TGG | 0.502280 | 4.3:-4012676 | MS.gene55846:CDS |
GAGAATCCCTTAGCTGGGAC+GGG | 0.502543 | 4.3:-4004257 | MS.gene55846:CDS |
ACAACAATGGCAATTAGATC+TGG | 0.503215 | 4.3:-4007431 | MS.gene55846:CDS |
ATAAAGCACAGAAGATAAAA+CGG | 0.505289 | 4.3:-4013635 | MS.gene55846:CDS |
GCCTCAAAAGCAGAAGAAGA+AGG | 0.506543 | 4.3:-4020534 | MS.gene55846:intron |
AGAAGAGTAACAGCCATATC+CGG | 0.506921 | 4.3:+4008486 | None:intergenic |
CATTTACGAGGTCATCATCA+AGG | 0.508246 | 4.3:+4005325 | None:intergenic |
CGCCGGCAACGGAGTTGGAT+CGG | 0.508476 | 4.3:+4020727 | None:intergenic |
CGTCCATGGCAGGACAAGGC+TGG | 0.509251 | 4.3:-4004450 | MS.gene55846:intron |
ATGATGACCTCGTAAATGCT+TGG | 0.509349 | 4.3:-4005320 | MS.gene55846:CDS |
AGCGATCCAGCTGTTGCCAC+TGG | 0.509409 | 4.3:-4005405 | MS.gene55846:CDS |
AGCAGCTTTAGCAGCGGAGA+TGG | 0.509758 | 4.3:+4020574 | None:intergenic |
GTAGCTCATTCCACCAAAAT+GGG | 0.509823 | 4.3:+4004729 | None:intergenic |
TGTATTTGGCATACTAGAGA+AGG | 0.511143 | 4.3:-4018776 | MS.gene55846:intron |
TTATAAAACTTGTAATGAGA+AGG | 0.511355 | 4.3:-4013602 | MS.gene55846:intron |
GGTGTGCATTCATTGGAAGC+TGG | 0.511807 | 4.3:-4007738 | MS.gene55846:CDS |
GTGTGCATTCATTGGAAGCT+GGG | 0.513404 | 4.3:-4007737 | MS.gene55846:CDS |
AGCGAAAGAAAGGCATACTT+GGG | 0.513636 | 4.3:-4018050 | MS.gene55846:CDS |
CTTAGCAATGGGGAAGATCA+AGG | 0.514847 | 4.3:-4007326 | MS.gene55846:CDS |
AAGAGCAAAGTATCTACCAT+TGG | 0.515690 | 4.3:-4007019 | MS.gene55846:CDS |
ATATGGAGCATCACAAAATA+CGG | 0.515986 | 4.3:-4004677 | MS.gene55846:intron |
TTTGCATGCCAGGAGAGTAT+GGG | 0.516282 | 4.3:+4004294 | None:intergenic |
TTCTACATTATGCGGTACTC+GGG | 0.517710 | 4.3:-4016381 | MS.gene55846:intron |
AAGGTTTGAGCTCTGGTGGC+GGG | 0.518866 | 4.3:-4019760 | MS.gene55846:CDS |
TGGATACTGAGGAAGTTCTT+CGG | 0.520951 | 4.3:+4012689 | None:intergenic |
GCAGGAAAGCAAGTGCAGCC+TGG | 0.520990 | 4.3:-4014601 | MS.gene55846:intron |
AGAGCAAAGTATCTACCATT+GGG | 0.521700 | 4.3:-4007018 | MS.gene55846:CDS |
TGGCAGGACAAGGCTGGCCG+AGG | 0.522319 | 4.3:-4004444 | MS.gene55846:intron |
TCCTGGCAGGGATGGCAAGA+TGG | 0.526731 | 4.3:-4003573 | MS.gene55846:CDS |
AAGGTCTAGCAGCCTTTCAT+GGG | 0.527022 | 4.3:+4007065 | None:intergenic |
CTATTAGCTATGATGATATG+TGG | 0.527416 | 4.3:-4004948 | MS.gene55846:CDS |
TCGGGCCGCTGCTTTCGCTG+TGG | 0.528030 | 4.3:-4013370 | MS.gene55846:CDS |
GCACTTTATGACTTCACGGC+AGG | 0.528163 | 4.3:-4004170 | MS.gene55846:CDS |
TAACAATGCTTACAGCAGCT+TGG | 0.528203 | 4.3:+4008009 | None:intergenic |
CGAGATCCCGTCCCAGCTAA+GGG | 0.528299 | 4.3:+4004251 | None:intergenic |
TTGTTGGAGCTGGTCCTGAT+GGG | 0.529502 | 4.3:-4008169 | MS.gene55846:CDS |
CTGGCTGACATCGATGCAGT+TGG | 0.529802 | 4.3:-4019713 | MS.gene55846:CDS |
TGAGAATCTCCCTGGTCAAA+CGG | 0.529964 | 4.3:+4013694 | None:intergenic |
TGTACGAGCGATGGTGATCA+AGG | 0.530253 | 4.3:-4012578 | MS.gene55846:CDS |
TGCAACTAAAGTTCCAGGAA+AGG | 0.531382 | 4.3:-4008445 | MS.gene55846:CDS |
AAGTGCACTTTATGACTTCA+CGG | 0.531440 | 4.3:-4004174 | MS.gene55846:CDS |
AACATCATCAACGCAGTACC+AGG | 0.531971 | 4.3:+4007835 | None:intergenic |
GTTGAAGATTGAGATGTTGA+CGG | 0.532217 | 4.3:+4020662 | None:intergenic |
TGAGAATCCCTTAGCTGGGA+CGG | 0.532369 | 4.3:-4004258 | MS.gene55846:CDS |
GAATGCACACCTCTGAAGCC+TGG | 0.534020 | 4.3:+4007750 | None:intergenic |
TCCCAAGGTTTGAGCTCTGG+TGG | 0.534781 | 4.3:-4019764 | MS.gene55846:CDS |
AGTGCTCTATCAACTTCTGT+TGG | 0.534992 | 4.3:-4013952 | MS.gene55846:CDS |
GACGGCGTTGCTGACGGAGT+TGG | 0.535035 | 4.3:+4020680 | None:intergenic |
GGCTGCAGATTTGAATGACT+CGG | 0.536006 | 4.3:-4013301 | MS.gene55846:CDS |
CCAAGCATAGATCCTGGTTG+TGG | 0.536523 | 4.3:+4008098 | None:intergenic |
AACGTTAGGTAAACCTGCTA+CGG | 0.536527 | 4.3:-4020642 | MS.gene55846:CDS |
GATGTTAGACGCTGACAAAA+TGG | 0.536682 | 4.3:-4007818 | MS.gene55846:CDS |
GGTTGCTGTGAGGAATGCTC+TGG | 0.538477 | 4.3:-4014809 | MS.gene55846:CDS |
GTTGTGGAGGTGGTAGATCA+AGG | 0.541508 | 4.3:+4008114 | None:intergenic |
AGATACCATTGCGGGTATGT+TGG | 0.542528 | 4.3:-4012650 | MS.gene55846:CDS |
AGGCCATTGCAACAGCATAA+GGG | 0.543844 | 4.3:+4014758 | None:intergenic |
ACGAGGAGAATATAATCTCT+AGG | 0.547828 | 4.3:-4004975 | MS.gene55846:CDS |
GTCAGACCAAGCATAGATCC+TGG | 0.549122 | 4.3:+4008092 | None:intergenic |
GCTAGAGTTGTACAGGAGAT+GGG | 0.549363 | 4.3:-4013399 | MS.gene55846:CDS |
GACAAAACATCAGAGTCTGT+TGG | 0.550001 | 4.3:+4018814 | None:intergenic |
ACTTGCAGTTTATAATTCTG+TGG | 0.550701 | 4.3:-4020129 | MS.gene55846:CDS |
TTATCTGACACTGGTTCCCA+AGG | 0.551286 | 4.3:-4019779 | MS.gene55846:CDS |
GAGCATACCATGAGAAGAGA+AGG | 0.552347 | 4.3:+4020092 | None:intergenic |
CCACAACCAGGATCTATGCT+TGG | 0.552834 | 4.3:-4008098 | MS.gene55846:CDS |
TCGTACATAAACACATTCAC+AGG | 0.553572 | 4.3:+4012594 | None:intergenic |
TCTGATGTGCATCTTAGCAA+TGG | 0.554508 | 4.3:-4007338 | MS.gene55846:CDS |
CAGAACTCTCTGATCCAGCT+TGG | 0.554901 | 4.3:-4012495 | MS.gene55846:CDS |
TTGAGTACGAAGTAGATGGC+TGG | 0.555913 | 4.3:-4003748 | MS.gene55846:CDS |
TGATACACCAGCAATGAATA+GGG | 0.556239 | 4.3:-4005280 | MS.gene55846:intron |
GCTGACATCGATGCAGTTGG+AGG | 0.556989 | 4.3:-4019710 | MS.gene55846:CDS |
AATGCTTGGGCAGCAAACCT+TGG | 0.557166 | 4.3:-4005306 | MS.gene55846:CDS |
AAGAAACGTCCTGGCAGGGA+TGG | 0.561026 | 4.3:-4003581 | MS.gene55846:CDS |
ACGGTAGATGTCAATGAGCT+TGG | 0.561903 | 4.3:+4005461 | None:intergenic |
TCTAGCTGCTGCATGAAGCA+CGG | 0.562243 | 4.3:+4013416 | None:intergenic |
TGATGACCTCGTAAATGCTT+GGG | 0.562574 | 4.3:-4005319 | MS.gene55846:CDS |
CTAGCTGCTGCATGAAGCAC+GGG | 0.562753 | 4.3:+4013417 | None:intergenic |
TTGCATGCCAGGAGAGTATG+GGG | 0.566515 | 4.3:+4004295 | None:intergenic |
CATTTGAGAATCCCTTAGCT+GGG | 0.567299 | 4.3:-4004262 | MS.gene55846:CDS |
TTGCTAGAGTTTCTCTAGCG+AGG | 0.568429 | 4.3:-4014134 | MS.gene55846:CDS |
CTTCATTAATGGAAGTGGTA+CGG | 0.569012 | 4.3:-4012627 | MS.gene55846:CDS |
AGCATAGATCCTGGTTGTGG+AGG | 0.572151 | 4.3:+4008101 | None:intergenic |
TATTAGCTATGATGATATGT+GGG | 0.573436 | 4.3:-4004947 | MS.gene55846:CDS |
GGCCGTGAACTGAACAGTGA+AGG | 0.575264 | 4.3:+4004706 | None:intergenic |
CAGTACCTTATTGGACCCAA+TGG | 0.576224 | 4.3:+4007003 | None:intergenic |
AGAAGAGAAGGAGCCAATGA+AGG | 0.579848 | 4.3:+4020104 | None:intergenic |
GATGAAGATGACGCCGGCAA+CGG | 0.582642 | 4.3:+4020716 | None:intergenic |
CTTTATGACTTCACGGCAGG+AGG | 0.584311 | 4.3:-4004167 | MS.gene55846:CDS |
GCTGGATTTCCAGGATCTAG+AGG | 0.585066 | 4.3:+4016406 | None:intergenic |
TGGTAACTTGAGAATCTCCC+TGG | 0.587150 | 4.3:+4013686 | None:intergenic |
TCGTATATCTGTAACCTGAA+AGG | 0.589752 | 4.3:+4007404 | None:intergenic |
TCCAGCATTTCTACATTATG+CGG | 0.591784 | 4.3:-4016389 | MS.gene55846:CDS |
GCACGGGTCTAGAAAAGCTA+CGG | 0.593575 | 4.3:+4013433 | None:intergenic |
CAGTTGATGCACTAATATTG+TGG | 0.594390 | 4.3:+4005433 | None:intergenic |
CAGGTTAAGAAGAAACGTCC+TGG | 0.595777 | 4.3:-4003590 | MS.gene55846:CDS |
TAGGTAAACGAATTTCTGGC+GGG | 0.595891 | 4.3:-4005024 | MS.gene55846:CDS |
AATTATATGAAACCCATGAA+AGG | 0.596823 | 4.3:-4007077 | MS.gene55846:CDS |
TGGCAGTTGAGTTTAACCGC+TGG | 0.597343 | 4.3:-4003785 | MS.gene55846:intron |
CAGAGCATCCCAATTAGGGG+TGG | 0.597872 | 4.3:+4019733 | None:intergenic |
TGTTTCTGAGATAGCAGCAA+GGG | 0.599840 | 4.3:-4014782 | MS.gene55846:CDS |
TTGTTTACATTTCAGGACTG+AGG | 0.604534 | 4.3:-4013736 | MS.gene55846:intron |
ACACCTCTGAAGCCTGGTCA+AGG | 0.604648 | 4.3:+4007756 | None:intergenic |
TAAGAAGAAACGTCCTGGCA+GGG | 0.606131 | 4.3:-4003585 | MS.gene55846:CDS |
GATCTACCACCTCCACAACC+AGG | 0.606596 | 4.3:-4008110 | MS.gene55846:CDS |
GGACCCTTATGCTGTTGCAA+TGG | 0.608824 | 4.3:-4014761 | MS.gene55846:CDS |
ACGACAATGCTAAGAAAGAG+TGG | 0.610661 | 4.3:-4007119 | MS.gene55846:CDS |
AAATAGAGGGACCGCTACCT+CGG | 0.610862 | 4.3:+4004427 | None:intergenic |
ATTCTCCTCGTCAACGTCTG+GGG | 0.614886 | 4.3:+4004987 | None:intergenic |
AAGGCATTAATCTGGATGCA+AGG | 0.614905 | 4.3:-4012559 | MS.gene55846:CDS |
GCCGTGAACTGAACAGTGAA+GGG | 0.615232 | 4.3:+4004707 | None:intergenic |
GTTACCAGATGCATCATCGA+AGG | 0.615618 | 4.3:-4013670 | MS.gene55846:CDS |
GGGGAAGATCAAGGAGCAAG+TGG | 0.617359 | 4.3:-4007317 | MS.gene55846:CDS |
CTGGATTTCCAGGATCTAGA+GGG | 0.617840 | 4.3:+4016407 | None:intergenic |
AGCGGTCCCTCTATTTATGA+GGG | 0.617904 | 4.3:-4004420 | MS.gene55846:CDS |
TCTAGAAACTACAGAACTAG+AGG | 0.618218 | 4.3:-4004914 | MS.gene55846:intron |
TGAAGCCAACATACCCGCAA+TGG | 0.618517 | 4.3:+4012645 | None:intergenic |
AGAACTTCCTCAGTATCCAA+TGG | 0.618546 | 4.3:-4012685 | MS.gene55846:CDS |
GATGTTGACGGCGTTGCTGA+CGG | 0.621236 | 4.3:+4020674 | None:intergenic |
AATCTCTACTTCTTCTCCAG+CGG | 0.621949 | 4.3:+4003769 | None:intergenic |
AAAACATCAGAGTCTGTTGG+AGG | 0.622045 | 4.3:+4018817 | None:intergenic |
GGCATACAGGATGTTGATGA+AGG | 0.622927 | 4.3:-4013348 | MS.gene55846:CDS |
TCATCAACGCAGTACCAGGA+GGG | 0.624778 | 4.3:+4007839 | None:intergenic |
TTTCTGCACACTTTAGCACA+AGG | 0.627658 | 4.3:-4007380 | MS.gene55846:CDS |
TGATGCCCCAGACGTTGACG+AGG | 0.628598 | 4.3:-4004992 | MS.gene55846:CDS |
ATTTACGAGGTCATCATCAA+GGG | 0.629069 | 4.3:+4005326 | None:intergenic |
TAGGACTTAATAAAACTCCC+AGG | 0.630135 | 4.3:+4007288 | None:intergenic |
AGAGCATCCCAATTAGGGGT+GGG | 0.631815 | 4.3:+4019734 | None:intergenic |
TTAGGTAAACGAATTTCTGG+CGG | 0.633136 | 4.3:-4005025 | MS.gene55846:intron |
TCAAAACAGACTCTTTCACT+GGG | 0.636018 | 4.3:+4013927 | None:intergenic |
TTGCTGCCCAAGCATTTACG+AGG | 0.636285 | 4.3:+4005313 | None:intergenic |
TGCTCAGGCTCTTACAACAA+TGG | 0.636701 | 4.3:-4007444 | MS.gene55846:CDS |
CTGCTGATCCGGTTGCTGTG+AGG | 0.637181 | 4.3:-4014819 | MS.gene55846:CDS |
CCAAGACCCTCATAAATAGA+GGG | 0.638533 | 4.3:+4004414 | None:intergenic |
AGCAGTTCCATTGGATACTG+AGG | 0.639227 | 4.3:+4012678 | None:intergenic |
TGCTGACGGAGTTGGAGCAG+CGG | 0.640315 | 4.3:+4020688 | None:intergenic |
TATGCCCACAGCGAAAGCAG+CGG | 0.644277 | 4.3:+4013365 | None:intergenic |
TTGCTGGTGTATCATCACCA+AGG | 0.644675 | 4.3:+4005289 | None:intergenic |
ATAGAGCACTGTATTGAACT+GGG | 0.645493 | 4.3:+4013965 | None:intergenic |
GTAGCTTAATCAGCAGTGTG+AGG | 0.650929 | 4.3:-4019846 | MS.gene55846:intron |
GAGTCTTCTCAAAGCACTCA+AGG | 0.654594 | 4.3:+4016429 | None:intergenic |
TGGGTGGTACCGTTTGACCA+GGG | 0.663267 | 4.3:-4013703 | MS.gene55846:CDS |
CATCAACGCAGTACCAGGAG+GGG | 0.663538 | 4.3:+4007840 | None:intergenic |
CTGAGGAGCGTGCTTCTGGG+TGG | 0.664102 | 4.3:-4013719 | MS.gene55846:CDS |
CATAACAAAACAATGAGACA+AGG | 0.664793 | 4.3:+4007046 | None:intergenic |
GTCAAGGCACCAGCAAGAGT+AGG | 0.664973 | 4.3:+4007772 | None:intergenic |
CTGCACACTTTAGCACAAGG+TGG | 0.665968 | 4.3:-4007377 | MS.gene55846:CDS |
TCGAACAGCAGCTTTAGCAG+CGG | 0.667433 | 4.3:+4020568 | None:intergenic |
ACATGTCAATACATTTGCTG+AGG | 0.669031 | 4.3:-4013322 | MS.gene55846:CDS |
ATCATCAACGCAGTACCAGG+AGG | 0.675971 | 4.3:+4007838 | None:intergenic |
TGCATTCATTGGAAGCTGGG+AGG | 0.676072 | 4.3:-4007734 | MS.gene55846:intron |
GCGAAAGAAAGGCATACTTG+GGG | 0.679284 | 4.3:-4018049 | MS.gene55846:CDS |
ATTGATTAACATACAAAACA+GGG | 0.680643 | 4.3:+4003540 | None:intergenic |
CGAAAGAAAGGCATACTTGG+GGG | 0.681525 | 4.3:-4018048 | MS.gene55846:CDS |
GTCGAAGATGAAGATGACGC+CGG | 0.687968 | 4.3:+4020710 | None:intergenic |
AGCCAGAGCATCCCAATTAG+GGG | 0.688173 | 4.3:+4019730 | None:intergenic |
TTGTTTCTGAGATAGCAGCA+AGG | 0.692944 | 4.3:-4014783 | MS.gene55846:CDS |
GGAAAGCAAGTGCAGCCTGG+AGG | 0.695657 | 4.3:-4014598 | MS.gene55846:intron |
GAAAATATGATAGCGCCGAG+AGG | 0.695917 | 4.3:-4013884 | MS.gene55846:intron |
GGTTATCAGATCCATTAGCG+TGG | 0.700850 | 4.3:+4020751 | None:intergenic |
CGGCAACGGAGTTGGATCGG+CGG | 0.702752 | 4.3:+4020730 | None:intergenic |
TGCTGGTAGAGATACCATTG+CGG | 0.709001 | 4.3:-4012659 | MS.gene55846:CDS |
ATGTGTTTATGTACGAGCGA+TGG | 0.721947 | 4.3:-4012587 | MS.gene55846:CDS |
GGTTTCAGAGAAGTTCTCAG+AGG | 0.723516 | 4.3:-4020178 | MS.gene55846:intron |
GATGAGATCAGATATACCAG+TGG | 0.724428 | 4.3:+4005389 | None:intergenic |
TGATGTGCATCTTAGCAATG+GGG | 0.732907 | 4.3:-4007336 | MS.gene55846:CDS |
TGCATGCCAGGAGAGTATGG+GGG | 0.739570 | 4.3:+4004296 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 4003535 | 4020869 | 4003535 | ID=MS.gene55846 |
chr4.3 | mRNA | 4003535 | 4020869 | 4003535 | ID=MS.gene55846.t1;Parent=MS.gene55846 |
chr4.3 | exon | 4020864 | 4020869 | 4020864 | ID=MS.gene55846.t1.exon1;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4020864 | 4020869 | 4020864 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4020535 | 4020786 | 4020535 | ID=MS.gene55846.t1.exon2;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4020535 | 4020786 | 4020535 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4020292 | 4020351 | 4020292 | ID=MS.gene55846.t1.exon3;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4020292 | 4020351 | 4020292 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4020100 | 4020192 | 4020100 | ID=MS.gene55846.t1.exon4;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4020100 | 4020192 | 4020100 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4019636 | 4019864 | 4019636 | ID=MS.gene55846.t1.exon5;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4019636 | 4019864 | 4019636 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4018777 | 4018883 | 4018777 | ID=MS.gene55846.t1.exon6;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4018777 | 4018883 | 4018777 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4018029 | 4018091 | 4018029 | ID=MS.gene55846.t1.exon7;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4018029 | 4018091 | 4018029 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4016382 | 4016482 | 4016382 | ID=MS.gene55846.t1.exon8;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4016382 | 4016482 | 4016382 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4014755 | 4014849 | 4014755 | ID=MS.gene55846.t1.exon9;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4014755 | 4014849 | 4014755 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4014599 | 4014619 | 4014599 | ID=MS.gene55846.t1.exon10;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4014599 | 4014619 | 4014599 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4014097 | 4014192 | 4014097 | ID=MS.gene55846.t1.exon11;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4014097 | 4014192 | 4014097 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4013885 | 4014005 | 4013885 | ID=MS.gene55846.t1.exon12;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4013885 | 4014005 | 4013885 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4013603 | 4013743 | 4013603 | ID=MS.gene55846.t1.exon13;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4013603 | 4013743 | 4013603 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4013280 | 4013470 | 4013280 | ID=MS.gene55846.t1.exon14;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4013280 | 4013470 | 4013280 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4012444 | 4012715 | 4012444 | ID=MS.gene55846.t1.exon15;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4012444 | 4012715 | 4012444 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4008413 | 4008514 | 4008413 | ID=MS.gene55846.t1.exon16;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4008413 | 4008514 | 4008413 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4008022 | 4008198 | 4008022 | ID=MS.gene55846.t1.exon17;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4008022 | 4008198 | 4008022 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4007735 | 4007923 | 4007735 | ID=MS.gene55846.t1.exon18;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4007735 | 4007923 | 4007735 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4007239 | 4007480 | 4007239 | ID=MS.gene55846.t1.exon19;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4007239 | 4007480 | 4007239 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4007009 | 4007155 | 4007009 | ID=MS.gene55846.t1.exon20;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4007009 | 4007155 | 4007009 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4005281 | 4005485 | 4005281 | ID=MS.gene55846.t1.exon21;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4005281 | 4005485 | 4005281 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4004915 | 4005043 | 4004915 | ID=MS.gene55846.t1.exon22;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4004915 | 4005043 | 4004915 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4004678 | 4004821 | 4004678 | ID=MS.gene55846.t1.exon23;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4004678 | 4004821 | 4004678 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4004407 | 4004460 | 4004407 | ID=MS.gene55846.t1.exon24;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4004407 | 4004460 | 4004407 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4004157 | 4004333 | 4004157 | ID=MS.gene55846.t1.exon25;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4004157 | 4004333 | 4004157 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4003742 | 4003801 | 4003742 | ID=MS.gene55846.t1.exon26;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4003742 | 4003801 | 4003742 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
chr4.3 | exon | 4003535 | 4003609 | 4003535 | ID=MS.gene55846.t1.exon27;Parent=MS.gene55846.t1 |
chr4.3 | CDS | 4003535 | 4003609 | 4003535 | ID=cds.MS.gene55846.t1;Parent=MS.gene55846.t1 |
Gene Sequence |
Protein sequence |