Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56099.t1 | XP_013467026.1 | 96 | 473 | 16 | 2 | 1 | 472 | 1 | 471 | 1.50E-164 | 589.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56099.t1 | Q8W4K5 | 55.9 | 469 | 187 | 10 | 13 | 469 | 30 | 490 | 1.2e-88 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56099.t1 | A0A072VHG4 | 96.0 | 473 | 16 | 2 | 1 | 472 | 1 | 471 | 1.1e-164 | 589.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053332 | MS.gene56099 | 0.948217 | 1.46E-106 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053332 | MS.gene56099 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56099.t1 | MTR_1g041395 | 96.406 | 473 | 14 | 2 | 1 | 472 | 1 | 471 | 0.0 | 730 |
| MS.gene56099.t1 | MTR_1g041395 | 96.195 | 473 | 14 | 3 | 1 | 472 | 1 | 470 | 0.0 | 723 |
| MS.gene56099.t1 | MTR_1g041395 | 93.528 | 479 | 22 | 3 | 1 | 472 | 1 | 477 | 0.0 | 723 |
| MS.gene56099.t1 | MTR_1g102980 | 69.628 | 484 | 104 | 10 | 1 | 470 | 1 | 455 | 3.35e-173 | 494 |
| MS.gene56099.t1 | MTR_1g041395 | 96.199 | 342 | 11 | 1 | 131 | 472 | 1 | 340 | 1.07e-164 | 468 |
| MS.gene56099.t1 | MTR_1g071450 | 66.738 | 469 | 133 | 11 | 13 | 469 | 26 | 483 | 2.49e-161 | 465 |
| MS.gene56099.t1 | MTR_7g095500 | 64.035 | 456 | 137 | 9 | 11 | 454 | 18 | 458 | 4.81e-154 | 450 |
| MS.gene56099.t1 | MTR_1g102980 | 81.848 | 303 | 47 | 2 | 169 | 470 | 35 | 330 | 8.30e-127 | 372 |
| MS.gene56099.t1 | MTR_3g110182 | 38.646 | 458 | 195 | 13 | 13 | 464 | 33 | 410 | 6.64e-65 | 215 |
| MS.gene56099.t1 | MTR_4g039910 | 48.855 | 262 | 98 | 5 | 168 | 420 | 99 | 333 | 1.15e-49 | 172 |
| MS.gene56099.t1 | MTR_5g012870 | 37.793 | 299 | 144 | 6 | 170 | 459 | 113 | 378 | 6.92e-46 | 164 |
| MS.gene56099.t1 | MTR_3g110182 | 39.186 | 393 | 154 | 12 | 13 | 399 | 31 | 344 | 1.76e-45 | 162 |
| MS.gene56099.t1 | MTR_4g019730 | 76.596 | 47 | 11 | 0 | 386 | 432 | 1 | 47 | 3.70e-18 | 80.9 |
| MS.gene56099.t1 | MTR_4g129510 | 33.108 | 296 | 153 | 7 | 170 | 462 | 118 | 371 | 1.49e-15 | 78.6 |
| MS.gene56099.t1 | MTR_4g129510 | 33.784 | 296 | 151 | 7 | 170 | 462 | 87 | 340 | 8.53e-15 | 75.9 |
| MS.gene56099.t1 | MTR_4g129510 | 40.000 | 210 | 90 | 3 | 170 | 377 | 118 | 293 | 8.93e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56099.t1 | AT4G14740 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| MS.gene56099.t1 | AT4G14740 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| MS.gene56099.t1 | AT3G22810 | 69.672 | 488 | 113 | 10 | 1 | 470 | 1 | 471 | 0.0 | 576 |
| MS.gene56099.t1 | AT5G43870 | 63.866 | 476 | 126 | 10 | 6 | 468 | 10 | 452 | 1.11e-173 | 496 |
| MS.gene56099.t1 | AT4G14740 | 68.523 | 413 | 112 | 6 | 1 | 401 | 1 | 407 | 2.23e-165 | 473 |
| MS.gene56099.t1 | AT3G22810 | 68.974 | 419 | 95 | 10 | 1 | 401 | 1 | 402 | 7.11e-160 | 459 |
| MS.gene56099.t1 | AT4G14740 | 74.006 | 327 | 78 | 3 | 144 | 465 | 8 | 332 | 6.98e-146 | 420 |
| MS.gene56099.t1 | AT3G22810 | 74.695 | 328 | 73 | 3 | 150 | 470 | 9 | 333 | 1.81e-145 | 419 |
| MS.gene56099.t1 | AT3G63300 | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 5.36e-144 | 422 |
| MS.gene56099.t1 | AT5G43870 | 63.325 | 409 | 104 | 10 | 6 | 401 | 10 | 385 | 7.02e-132 | 387 |
| MS.gene56099.t1 | AT3G63300 | 69.872 | 312 | 86 | 4 | 159 | 469 | 28 | 332 | 4.71e-104 | 314 |
| MS.gene56099.t1 | AT4G32780 | 38.344 | 459 | 174 | 14 | 13 | 460 | 35 | 395 | 1.08e-44 | 161 |
| MS.gene56099.t1 | AT4G32780 | 38.344 | 459 | 174 | 14 | 13 | 460 | 54 | 414 | 1.55e-44 | 161 |
| MS.gene56099.t1 | AT4G17350 | 39.667 | 300 | 140 | 8 | 170 | 459 | 115 | 383 | 1.94e-43 | 158 |
| MS.gene56099.t1 | AT5G47440 | 37.979 | 287 | 146 | 5 | 178 | 461 | 131 | 388 | 1.10e-39 | 148 |
| MS.gene56099.t1 | AT4G16670 | 35.906 | 298 | 162 | 5 | 170 | 459 | 132 | 408 | 8.42e-38 | 143 |
| MS.gene56099.t1 | AT4G16670 | 39.749 | 239 | 116 | 4 | 170 | 400 | 132 | 350 | 1.27e-30 | 122 |
| MS.gene56099.t1 | AT4G16670 | 35.448 | 268 | 116 | 5 | 170 | 400 | 132 | 379 | 6.56e-25 | 106 |
| MS.gene56099.t1 | AT5G57770 | 38.525 | 244 | 114 | 6 | 170 | 410 | 128 | 338 | 2.01e-20 | 93.6 |
| MS.gene56099.t1 | AT5G57770 | 36.177 | 293 | 137 | 8 | 122 | 394 | 63 | 325 | 7.17e-20 | 90.9 |
Find 134 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTCCAAACTTCTTTA+AGG | 0.144092 | 1.1:+25401164 | None:intergenic |
| TGAGAGGAAGCAAAAGAAAA+AGG | 0.166140 | 1.1:+25404052 | None:intergenic |
| ATTGGGTCACGAGGTGTTTC+TGG | 0.168206 | 1.1:+25404247 | None:intergenic |
| GAGTCTATTATAACTGTTTC+TGG | 0.188381 | 1.1:-25404079 | MS.gene56099:CDS |
| TCAAACTTCTCAAATGGTTT+TGG | 0.205061 | 1.1:-25404032 | MS.gene56099:CDS |
| CATGCTGCAGTTTCGGTTGC+TGG | 0.221538 | 1.1:-25401728 | MS.gene56099:CDS |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1.1:-25401035 | MS.gene56099:CDS |
| AATATTCCAAACTTCTTTAA+GGG | 0.302087 | 1.1:+25401165 | None:intergenic |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1.1:-25401134 | MS.gene56099:CDS |
| GGAGAGGAAGGAAAAGAAAA+AGG | 0.308251 | 1.1:-25401780 | MS.gene56099:CDS |
| GATAGTCTTCCTGATGTTCT+TGG | 0.310186 | 1.1:+25403501 | None:intergenic |
| GCCGCAACTGCTGCTTCGTC+AGG | 0.322180 | 1.1:-25401677 | MS.gene56099:CDS |
| CAAGGGCCCTTAAAGAAGTT+TGG | 0.334393 | 1.1:-25401171 | MS.gene56099:CDS |
| TGGAATTCTTGTCACGTTCA+TGG | 0.356920 | 1.1:-25404225 | MS.gene56099:CDS |
| GCCACCGGCGGTGGCGGAGG+CGG | 0.357360 | 1.1:-25401830 | MS.gene56099:CDS |
| TCAGCTCCATGCTGCAGTTT+CGG | 0.359795 | 1.1:-25401735 | MS.gene56099:CDS |
| GAGGGAAGACGGTGGGGAGG+TGG | 0.359935 | 1.1:-25401808 | MS.gene56099:CDS |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.362149 | 1.1:-25401518 | MS.gene56099:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1.1:-25401579 | MS.gene56099:CDS |
| ACCGGCGGTGGCGGAGGCGG+AGG | 0.377516 | 1.1:-25401827 | MS.gene56099:CDS |
| GTCTCTGCCACCGGCGGTGG+CGG | 0.378739 | 1.1:-25401836 | MS.gene56099:CDS |
| TCCATTTCAGATGGTGAAAC+TGG | 0.387626 | 1.1:+25403435 | None:intergenic |
| TTGGGTCACGAGGTGTTTCT+GGG | 0.401162 | 1.1:+25404248 | None:intergenic |
| GAAAGAGGAGGGAGTTGAGC+TGG | 0.402468 | 1.1:+25404166 | None:intergenic |
| AGCATGGAGCTGAGCATTGT+GGG | 0.402854 | 1.1:+25401745 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1.1:+25401060 | None:intergenic |
| ACCAGTTTCACCATCTGAAA+TGG | 0.411730 | 1.1:-25403436 | MS.gene56099:CDS |
| GGTAGCGTCGGCTGCCACAT+TGG | 0.419914 | 1.1:-25401615 | MS.gene56099:CDS |
| TTGAGCTGGAGACAAAGCTT+TGG | 0.431363 | 1.1:+25404180 | None:intergenic |
| TTCCTCTCAAACTTCTCAAA+TGG | 0.431509 | 1.1:-25404038 | MS.gene56099:CDS |
| AAAGAAATGCCGGCTTGGCC+TGG | 0.432592 | 1.1:-25399763 | MS.gene56099:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1.1:-25401034 | MS.gene56099:CDS |
| ATGGTAATGGTAATGGTGGT+GGG | 0.434293 | 1.1:-25401105 | MS.gene56099:CDS |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1.1:-25401578 | MS.gene56099:CDS |
| TGTGGACTCAAGGTGTTTCA+AGG | 0.439083 | 1.1:-25399636 | MS.gene56099:CDS |
| ATCTGAAATGGATGATTTCA+AGG | 0.441945 | 1.1:-25403424 | MS.gene56099:intron |
| AATGGTAATGGTAATGGTGG+TGG | 0.445582 | 1.1:-25401106 | MS.gene56099:CDS |
| GTCACGAGGTGTTTCTGGGT+CGG | 0.446288 | 1.1:+25404252 | None:intergenic |
| TGAGCGTGATCACCTTGCTT+CGG | 0.448852 | 1.1:-25401552 | MS.gene56099:CDS |
| TCTGCCACCGGCGGTGGCGG+AGG | 0.450077 | 1.1:-25401833 | MS.gene56099:CDS |
| TCACGAGGTGTTTCTGGGTC+GGG | 0.454736 | 1.1:+25404253 | None:intergenic |
| CCTGGACGTCACTTGCTAGA+AGG | 0.455426 | 1.1:-25399745 | MS.gene56099:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1.1:-25401811 | MS.gene56099:CDS |
| CCCTCCGCCTCCGCCACCGC+CGG | 0.464687 | 1.1:+25401826 | None:intergenic |
| GAGGTGGCTGAAGGAGAGGA+AGG | 0.465983 | 1.1:-25401792 | MS.gene56099:CDS |
| CCGTGAATGTGAGGTCTGCC+GGG | 0.466362 | 1.1:-25401517 | MS.gene56099:CDS |
| TTGAGTTTGTTTGAAAGAGG+AGG | 0.469011 | 1.1:+25404154 | None:intergenic |
| TTTAAGAAGCTCACAACCTC+TGG | 0.469999 | 1.1:+25400988 | None:intergenic |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1.1:-25401124 | MS.gene56099:CDS |
| CCGGCGGTGGCGGAGGCGGA+GGG | 0.476107 | 1.1:-25401826 | MS.gene56099:CDS |
| GAGGTATCTCCAAGAACATC+AGG | 0.477235 | 1.1:-25403510 | MS.gene56099:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1.1:-25401819 | MS.gene56099:CDS |
| TTGACGGCTGCTGCTGCGAC+AGG | 0.482568 | 1.1:-25401482 | MS.gene56099:intron |
| ATGAAGAGTAGACATGTTGC+TGG | 0.483425 | 1.1:-25400127 | MS.gene56099:CDS |
| GTAGGTAATGGTAATGGTAA+TGG | 0.484250 | 1.1:-25401112 | MS.gene56099:CDS |
| TTGTTGAGTTTGTTTGAAAG+AGG | 0.487700 | 1.1:+25404151 | None:intergenic |
| TGAGTTTGTTTGAAAGAGGA+GGG | 0.490544 | 1.1:+25404155 | None:intergenic |
| TGATTGCAGGTGAACTCCAT+TGG | 0.494096 | 1.1:-25400449 | MS.gene56099:intron |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1.1:-25401814 | MS.gene56099:CDS |
| AGAGTCTCTGCCACCGGCGG+TGG | 0.498489 | 1.1:-25401839 | MS.gene56099:CDS |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1.1:-25401210 | MS.gene56099:intron |
| GGTGACAACCGTCGTTACTT+TGG | 0.503924 | 1.1:-25399721 | MS.gene56099:CDS |
| CCCGGCAGACCTCACATTCA+CGG | 0.504849 | 1.1:+25401517 | None:intergenic |
| TCCGCCTCCGCCACCGCCGG+TGG | 0.505322 | 1.1:+25401829 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1.1:-25401211 | MS.gene56099:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1.1:-25401194 | MS.gene56099:CDS |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1.1:-25401816 | MS.gene56099:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1.1:-25401577 | MS.gene56099:CDS |
| GAACGTGACAAGAATTCCAT+TGG | 0.511728 | 1.1:+25404229 | None:intergenic |
| TGGGGAGGTGGCTGAAGGAG+AGG | 0.513502 | 1.1:-25401796 | MS.gene56099:CDS |
| GACAGACATGGCGGTAGCGT+CGG | 0.513746 | 1.1:-25401627 | MS.gene56099:CDS |
| CACAGCAGTGGACCTCTGAA+TGG | 0.517311 | 1.1:-25403477 | MS.gene56099:CDS |
| GACGGTGGGGAGGTGGCTGA+AGG | 0.519611 | 1.1:-25401801 | MS.gene56099:CDS |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1.1:-25401815 | MS.gene56099:CDS |
| GTCGGCTGCCACATTGGTGG+CGG | 0.524542 | 1.1:-25401609 | MS.gene56099:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1.1:+25401130 | None:intergenic |
| CTTCTTAAACGCACTCGCAC+AGG | 0.525523 | 1.1:-25400974 | MS.gene56099:intron |
| TTCATGGTCTGCTTCTGCCA+TGG | 0.527044 | 1.1:-25404209 | MS.gene56099:CDS |
| TTATCAAAGAAATGCCGGCT+TGG | 0.527997 | 1.1:-25399768 | MS.gene56099:CDS |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1.1:+25401897 | None:intergenic |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1.1:-25401189 | MS.gene56099:CDS |
| CGGGGATATTACAACGTTGA+CGG | 0.533765 | 1.1:-25401498 | MS.gene56099:CDS |
| TGGCGTTATCAAAGAAATGC+CGG | 0.537650 | 1.1:-25399773 | MS.gene56099:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1.1:-25401576 | MS.gene56099:CDS |
| AGCGTCGGCTGCCACATTGG+TGG | 0.546806 | 1.1:-25401612 | MS.gene56099:CDS |
| CAAAGCTTTGGAGACTTCCA+TGG | 0.548578 | 1.1:+25404192 | None:intergenic |
| GCGTGATCACCTTGCTTCGG+TGG | 0.553499 | 1.1:-25401549 | MS.gene56099:CDS |
| TTGAAATCATCCATTTCAGA+TGG | 0.555890 | 1.1:+25403426 | None:intergenic |
| CAGCATGGAGCTGAGCATTG+TGG | 0.557047 | 1.1:+25401744 | None:intergenic |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1.1:+25401697 | None:intergenic |
| CCTTCTAGCAAGTGACGTCC+AGG | 0.563097 | 1.1:+25399745 | None:intergenic |
| AACGTGACAAGAATTCCATT+GGG | 0.572460 | 1.1:+25404230 | None:intergenic |
| ACCTGACGAAGCAGCAGTTG+CGG | 0.576149 | 1.1:+25401676 | None:intergenic |
| AAGTGACGTCCAGGCCAAGC+CGG | 0.581177 | 1.1:+25399754 | None:intergenic |
| GGATCGTATCATGTCTCACT+CGG | 0.582016 | 1.1:-25404011 | MS.gene56099:intron |
| AAGTATAGCAGCATTTGAAG+AGG | 0.585192 | 1.1:+25404126 | None:intergenic |
| GGTAATGGTAATGGTGGTGG+GGG | 0.586229 | 1.1:-25401103 | MS.gene56099:CDS |
| TTATCTCTATTGCTGCTGAA+AGG | 0.588258 | 1.1:-25399612 | MS.gene56099:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1.1:-25401188 | MS.gene56099:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1.1:-25401654 | MS.gene56099:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1.1:-25401130 | MS.gene56099:CDS |
| AATTTGGTAGGTAATGGTAA+TGG | 0.595486 | 1.1:-25401118 | MS.gene56099:CDS |
| CGTCAACGTTGTAATATCCC+CGG | 0.596809 | 1.1:+25401499 | None:intergenic |
| AACCATTTGAGAAGTTTGAG+AGG | 0.597240 | 1.1:+25404036 | None:intergenic |
| ATCAAAGAGAATATGATGTG+TGG | 0.600476 | 1.1:-25399654 | MS.gene56099:CDS |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1.1:+25401846 | None:intergenic |
| TACAGAGTCTCTGCCACCGG+CGG | 0.605030 | 1.1:-25401842 | MS.gene56099:CDS |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1.1:-25401845 | MS.gene56099:CDS |
| GAATATGATGTGTGGACTCA+AGG | 0.605562 | 1.1:-25399646 | MS.gene56099:CDS |
| AGAAACACCTCGTGACCCAA+TGG | 0.606803 | 1.1:-25404245 | MS.gene56099:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1.1:-25401708 | MS.gene56099:CDS |
| ATTTCAGATGGTGAAACTGG+TGG | 0.611155 | 1.1:+25403438 | None:intergenic |
| TGGTAATGGTAATGGTGGTG+GGG | 0.612875 | 1.1:-25401104 | MS.gene56099:CDS |
| GGTAATGGTAATGGTAATGG+TGG | 0.614443 | 1.1:-25401109 | MS.gene56099:CDS |
| CAGAGCTAACCACCGAAGCA+AGG | 0.614663 | 1.1:+25401540 | None:intergenic |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1.1:-25401064 | MS.gene56099:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.620073 | 1.1:-25401585 | MS.gene56099:CDS |
| AGTAGAGAATTGCTTGCCAG+AGG | 0.621265 | 1.1:-25401004 | MS.gene56099:CDS |
| AAGAATTCCATTGGGTCACG+AGG | 0.624678 | 1.1:+25404238 | None:intergenic |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.625902 | 1.1:-25401526 | MS.gene56099:CDS |
| CAGCAACCGAAACTGCAGCA+TGG | 0.627948 | 1.1:+25401729 | None:intergenic |
| TGAAGAGTAGACATGTTGCT+GGG | 0.634135 | 1.1:-25400126 | MS.gene56099:CDS |
| TATTGCTGCTGTAATTCCTG+TGG | 0.643534 | 1.1:-25401146 | MS.gene56099:CDS |
| TTATATAAACAGAATGAACC+AGG | 0.647298 | 1.1:-25400412 | MS.gene56099:intron |
| TCTGTTAAAGATCCATTCAG+AGG | 0.654153 | 1.1:+25403465 | None:intergenic |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1.1:-25401639 | MS.gene56099:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1.1:-25401209 | MS.gene56099:intron |
| GGACGTCACTTGCTAGAAGG+TGG | 0.663656 | 1.1:-25399742 | MS.gene56099:CDS |
| GGAAGACTATCACACAGCAG+TGG | 0.682507 | 1.1:-25403489 | MS.gene56099:CDS |
| CGTGAATGTGAGGTCTGCCG+GGG | 0.682902 | 1.1:-25401516 | MS.gene56099:CDS |
| GGTTTGAAAACAATAACGCG+TGG | 0.695099 | 1.1:-25399700 | MS.gene56099:CDS |
| GGTGGCGGCTCAATGTGTTG+AGG | 0.700934 | 1.1:-25401594 | MS.gene56099:CDS |
| ACATTGAGCCGCCACCAATG+TGG | 0.704591 | 1.1:+25401601 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1.1:-25401636 | MS.gene56099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATACATAATTTATTAA+TGG | - | chr1.1:25401920-25401939 | MS.gene56099:intron | 10.0% |
| !! | AAACTAATCAATAGTTAATA+AGG | - | chr1.1:25401560-25401579 | MS.gene56099:CDS | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1.1:25401569-25401588 | MS.gene56099:CDS | 15.0% |
| !! | AATTGAAATGAAAAAAGAAA+AGG | + | chr1.1:25403504-25403523 | None:intergenic | 15.0% |
| !! | CATGAAATTAATCATAAAAA+AGG | - | chr1.1:25402455-25402474 | MS.gene56099:intron | 15.0% |
| !! | TAAAATACTATATGCAAAAA+TGG | + | chr1.1:25399904-25399923 | None:intergenic | 15.0% |
| !! | TTTAGTAAAATTATAGTCAA+TGG | + | chr1.1:25400833-25400852 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1.1:25401546-25401565 | None:intergenic | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | - | chr1.1:25402628-25402647 | MS.gene56099:intron | 15.0% |
| !!! | TTATTCTTTAAACTTTGAAA+TGG | - | chr1.1:25403894-25403913 | MS.gene56099:intron | 15.0% |
| !!! | TTGAAAATTTTCACTTTTAA+AGG | + | chr1.1:25401193-25401212 | None:intergenic | 15.0% |
| !! | AAAAACAAAACAAACAACAA+TGG | - | chr1.1:25399592-25399611 | MS.gene56099:CDS | 20.0% |
| !! | AATATTCCAAACTTCTTTAA+GGG | + | chr1.1:25402709-25402728 | None:intergenic | 20.0% |
| !! | ACTATAATTACACATAAAAG+AGG | + | chr1.1:25401223-25401242 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr1.1:25401483-25401502 | None:intergenic | 20.0% |
| !! | ATAATTCTCAAATATATACC+TGG | + | chr1.1:25403480-25403499 | None:intergenic | 20.0% |
| !! | CTATAATTACACATAAAAGA+GGG | + | chr1.1:25401222-25401241 | None:intergenic | 20.0% |
| !! | GGTAATAATTTAAGAAACAA+TGG | + | chr1.1:25403264-25403283 | None:intergenic | 20.0% |
| !! | TACATCTTTCTTAATTTCAT+AGG | - | chr1.1:25400474-25400493 | MS.gene56099:intron | 20.0% |
| !! | TGTAAACAATCACAAATAAA+AGG | + | chr1.1:25402437-25402456 | None:intergenic | 20.0% |
| !! | TTATCATACTTTAACTGATT+TGG | - | chr1.1:25403827-25403846 | MS.gene56099:intron | 20.0% |
| !!! | CCAAATTAGCTTTAATTAAA+GGG | - | chr1.1:25400891-25400910 | MS.gene56099:intron | 20.0% |
| !!! | GCATTTTTTGTGATATATAT+TGG | + | chr1.1:25401849-25401868 | None:intergenic | 20.0% |
| !!! | GCTGTTTTATTTTTTGTAAA+GGG | + | chr1.1:25401248-25401267 | None:intergenic | 20.0% |
| !!! | GTGTTTCTTTTTATGTTTAA+AGG | - | chr1.1:25403374-25403393 | MS.gene56099:intron | 20.0% |
| !!! | TCCAAATTAGCTTTAATTAA+AGG | - | chr1.1:25400890-25400909 | MS.gene56099:intron | 20.0% |
| !!! | TCTAATTTGAAACTAGAATT+CGG | + | chr1.1:25403050-25403069 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTATTTTTTGTAA+AGG | + | chr1.1:25401249-25401268 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTCAAAACTTTTT+GGG | - | chr1.1:25400556-25400575 | MS.gene56099:intron | 20.0% |
| !!! | TTCTTTTTATGTTTAAAGGA+TGG | - | chr1.1:25403378-25403397 | MS.gene56099:intron | 20.0% |
| !!! | TTGTTTTTCTCAAAACTTTT+TGG | - | chr1.1:25400555-25400574 | MS.gene56099:intron | 20.0% |
| !!! | TTTAAAATTCAAGTCATGTT+TGG | + | chr1.1:25400743-25400762 | None:intergenic | 20.0% |
| !!! | TTTTTGTGATATATATTGGT+GGG | + | chr1.1:25401845-25401864 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATATATATTGG+TGG | + | chr1.1:25401846-25401865 | None:intergenic | 20.0% |
| ! | AAAAACCATGTTTATCCATA+AGG | + | chr1.1:25401716-25401735 | None:intergenic | 25.0% |
| ! | AAAACCATGTTTATCCATAA+GGG | + | chr1.1:25401715-25401734 | None:intergenic | 25.0% |
| ! | AATTTGGAAGTGACAAAAAA+TGG | + | chr1.1:25400176-25400195 | None:intergenic | 25.0% |
| ! | ACTACAATTTGTAGATTTCT+AGG | + | chr1.1:25403684-25403703 | None:intergenic | 25.0% |
| ! | AGAAAGGAAGAAAAAAACAA+TGG | - | chr1.1:25402591-25402610 | MS.gene56099:intron | 25.0% |
| ! | AGCAATAACAAACTTTGTAT+TGG | + | chr1.1:25401750-25401769 | None:intergenic | 25.0% |
| ! | AGTGCTAAAAACAAAAACTT+TGG | + | chr1.1:25400808-25400827 | None:intergenic | 25.0% |
| ! | AGTTAAAGTATGATAAGAGA+AGG | + | chr1.1:25403823-25403842 | None:intergenic | 25.0% |
| ! | ATCTTTCTTAATTTCATAGG+TGG | - | chr1.1:25400477-25400496 | MS.gene56099:intron | 25.0% |
| ! | ATGACAACATTGATAAATGT+CGG | + | chr1.1:25403214-25403233 | None:intergenic | 25.0% |
| ! | CAATATTCCAAACTTCTTTA+AGG | + | chr1.1:25402710-25402729 | None:intergenic | 25.0% |
| ! | CATAGACTTAAGTCTATAAT+TGG | + | chr1.1:25403154-25403173 | None:intergenic | 25.0% |
| ! | CCCTTTAATTAAAGCTAATT+TGG | + | chr1.1:25400894-25400913 | None:intergenic | 25.0% |
| ! | CTTAACGATTTGATTCTTAA+TGG | + | chr1.1:25401125-25401144 | None:intergenic | 25.0% |
| ! | GTTAAAGTATGATAAGAGAA+GGG | + | chr1.1:25403822-25403841 | None:intergenic | 25.0% |
| ! | TAAAACCTTGGATACAAATT+TGG | + | chr1.1:25400192-25400211 | None:intergenic | 25.0% |
| ! | TGATTAATTTATGGTGTTTG+TGG | - | chr1.1:25402637-25402656 | MS.gene56099:intron | 25.0% |
| ! | TGTGATTCTTTGTAATATCA+AGG | + | chr1.1:25400240-25400259 | None:intergenic | 25.0% |
| ! | TGTTACCAACAAACATAAAT+TGG | - | chr1.1:25400652-25400671 | MS.gene56099:intron | 25.0% |
| ! | TTAAAGTATGATAAGAGAAG+GGG | + | chr1.1:25403821-25403840 | None:intergenic | 25.0% |
| ! | TTATATAAACAGAATGAACC+AGG | - | chr1.1:25403459-25403478 | MS.gene56099:CDS | 25.0% |
| !! | AAATTTCAAAAAGCATGAGT+CGG | + | chr1.1:25404061-25404080 | None:intergenic | 25.0% |
| !! | AGTGACAAAAAATGGAATTT+TGG | + | chr1.1:25400168-25400187 | None:intergenic | 25.0% |
| !! | ATAATTGATGGCCAAATAAT+TGG | + | chr1.1:25403557-25403576 | None:intergenic | 25.0% |
| !! | CTTCAAATTTAAAGTGTGTT+TGG | - | chr1.1:25403185-25403204 | MS.gene56099:intron | 25.0% |
| !! | GTGACAAAAAATGGAATTTT+GGG | + | chr1.1:25400167-25400186 | None:intergenic | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | - | chr1.1:25402575-25402594 | MS.gene56099:intron | 25.0% |
| !! | TTGATTTGATAATTGATTGC+AGG | - | chr1.1:25403409-25403428 | MS.gene56099:intron | 25.0% |
| !!! | AAACTTTGAAATGGATCAAA+AGG | - | chr1.1:25403903-25403922 | MS.gene56099:intron | 25.0% |
| !!! | AAAGTTGATTTTGACATCTT+TGG | + | chr1.1:25403112-25403131 | None:intergenic | 25.0% |
| !!! | ACTCTTTTTCTTTTTTGTGA+TGG | + | chr1.1:25403772-25403791 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGAAAATCGACGT+CGG | + | chr1.1:25401017-25401036 | None:intergenic | 25.0% |
| AAAAACCAAACAAACCAACA+TGG | + | chr1.1:25400536-25400555 | None:intergenic | 30.0% | |
| AAAAGAAAAAGGAGGAAACA+AGG | - | chr1.1:25402102-25402121 | MS.gene56099:intron | 30.0% | |
| AAACAATGGAAGTGATTGAA+TGG | + | chr1.1:25403250-25403269 | None:intergenic | 30.0% | |
| AAACCATGTTTATCCATAAG+GGG | + | chr1.1:25401714-25401733 | None:intergenic | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | - | chr1.1:25402103-25402122 | MS.gene56099:intron | 30.0% | |
| AAAGTGAACTGAATGTAAAG+TGG | - | chr1.1:25402965-25402984 | MS.gene56099:intron | 30.0% | |
| AAGGAAGAAAAAAACAATGG+TGG | - | chr1.1:25402594-25402613 | MS.gene56099:intron | 30.0% | |
| AGTCACAGCTTCATTAAAAT+TGG | - | chr1.1:25401302-25401321 | MS.gene56099:intron | 30.0% | |
| ATCAAAGAGAATATGATGTG+TGG | - | chr1.1:25404217-25404236 | MS.gene56099:CDS | 30.0% | |
| ATCAACTTTGCTTCTTTCAA+TGG | - | chr1.1:25403123-25403142 | MS.gene56099:intron | 30.0% | |
| ATGGCTAAATAAGGAATCAA+AGG | + | chr1.1:25401351-25401370 | None:intergenic | 30.0% | |
| CTTGACTATGACCAATTATT+TGG | - | chr1.1:25403543-25403562 | MS.gene56099:intron | 30.0% | |
| GAATGTAAAGTGGTTTAAAG+TGG | - | chr1.1:25402975-25402994 | MS.gene56099:intron | 30.0% | |
| GAGTCTATTATAACTGTTTC+TGG | - | chr1.1:25399792-25399811 | MS.gene56099:intron | 30.0% | |
| GATGAATAAGAATCTGATAG+TGG | - | chr1.1:25403589-25403608 | MS.gene56099:intron | 30.0% | |
| GCAATTGCATTTATTGCTAA+TGG | - | chr1.1:25401687-25401706 | MS.gene56099:CDS | 30.0% | |
| GTCATCCAATTTATGTTTGT+TGG | + | chr1.1:25400660-25400679 | None:intergenic | 30.0% | |
| TGGCTAAATAAGGAATCAAA+GGG | + | chr1.1:25401350-25401369 | None:intergenic | 30.0% | |
| TTGAAATCATCCATTTCAGA+TGG | + | chr1.1:25400448-25400467 | None:intergenic | 30.0% | |
| TTGTTAGCTGTTACAACTAT+AGG | + | chr1.1:25401791-25401810 | None:intergenic | 30.0% | |
| ! | AAACTGACACAATTTTCCAA+TGG | + | chr1.1:25403441-25403460 | None:intergenic | 30.0% |
| ! | AAATTTAGAGTTCTCCCAAA+AGG | + | chr1.1:25401088-25401107 | None:intergenic | 30.0% |
| ! | AAGGAATCAAAGGGTAATTT+TGG | + | chr1.1:25401341-25401360 | None:intergenic | 30.0% |
| ! | AATTTCAAAAAGCATGAGTC+GGG | + | chr1.1:25404060-25404079 | None:intergenic | 30.0% |
| ! | AATTTGGTAGGTAATGGTAA+TGG | - | chr1.1:25402753-25402772 | MS.gene56099:intron | 30.0% |
| ! | ATCTGAAATGGATGATTTCA+AGG | - | chr1.1:25400447-25400466 | MS.gene56099:intron | 30.0% |
| ! | ATTAGCATTTTCAGTCTCAT+TGG | - | chr1.1:25402522-25402541 | MS.gene56099:intron | 30.0% |
| ! | CTGTATGTGGATTAAAGAAA+AGG | - | chr1.1:25403326-25403345 | MS.gene56099:intron | 30.0% |
| ! | GCAACATCAATTTAAAACCT+TGG | + | chr1.1:25400204-25400223 | None:intergenic | 30.0% |
| ! | TAAAGTGGTTTAAAGTGGTT+TGG | - | chr1.1:25402980-25402999 | MS.gene56099:intron | 30.0% |
| ! | TACTGATTATTACTGTCTCT+GGG | + | chr1.1:25400684-25400703 | None:intergenic | 30.0% |
| ! | TCAAACTTCTCAAATGGTTT+TGG | - | chr1.1:25399839-25399858 | MS.gene56099:intron | 30.0% |
| ! | TTACTGATTATTACTGTCTC+TGG | + | chr1.1:25400685-25400704 | None:intergenic | 30.0% |
| ! | TTGTTGAGTTTGTTTGAAAG+AGG | + | chr1.1:25399723-25399742 | None:intergenic | 30.0% |
| ! | TTTTCAAACCAAAGTAACGA+CGG | + | chr1.1:25404161-25404180 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1.1:25401652-25401671 | MS.gene56099:CDS | 30.0% |
| !! | AATCAAAGGGTAATTTTGGT+TGG | + | chr1.1:25401337-25401356 | None:intergenic | 30.0% |
| !! | TCATACTTTAACTGATTTGG+AGG | - | chr1.1:25403830-25403849 | MS.gene56099:intron | 30.0% |
| !! | TTAGATCCTCTTTTTGTTTC+AGG | - | chr1.1:25403710-25403729 | MS.gene56099:intron | 30.0% |
| !!! | AGCTTTTTTTGTTTCCTTGA+TGG | + | chr1.1:25401370-25401389 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1.1:25401651-25401670 | None:intergenic | 30.0% |
| AAAGCTGAAATTGGTACTAG+TGG | + | chr1.1:25400629-25400648 | None:intergenic | 35.0% | |
| AACCATTTGAGAAGTTTGAG+AGG | + | chr1.1:25399838-25399857 | None:intergenic | 35.0% | |
| AACGTGACAAGAATTCCATT+GGG | + | chr1.1:25399644-25399663 | None:intergenic | 35.0% | |
| AACTTTGCTTCTTTCAATGG+TGG | - | chr1.1:25403126-25403145 | MS.gene56099:intron | 35.0% | |
| AAGTATAGCAGCATTTGAAG+AGG | + | chr1.1:25399748-25399767 | None:intergenic | 35.0% | |
| AATTCCTGTGGAGAAGAATT+TGG | - | chr1.1:25402737-25402756 | MS.gene56099:intron | 35.0% | |
| ACCTTAACAAACAACCATGT+TGG | - | chr1.1:25400519-25400538 | MS.gene56099:intron | 35.0% | |
| ATAACGTTAAGTAAACGTCG+TGG | + | chr1.1:25400281-25400300 | None:intergenic | 35.0% | |
| CACTTCCAAATTTGTATCCA+AGG | - | chr1.1:25400184-25400203 | MS.gene56099:intron | 35.0% | |
| GAAAGAAGTGACTAAAGTGA+GGG | - | chr1.1:25403611-25403630 | MS.gene56099:intron | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | - | chr1.1:25402747-25402766 | MS.gene56099:intron | 35.0% | |
| GAGAGGAAGCAAAAGAAAAA+GGG | + | chr1.1:25399821-25399840 | None:intergenic | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | - | chr1.1:25402837-25402856 | MS.gene56099:intron | 35.0% | |
| GCATAACCTGAAACAAAAAG+AGG | + | chr1.1:25403719-25403738 | None:intergenic | 35.0% | |
| GTAACAGAGAAAGCTGAAAT+TGG | + | chr1.1:25400638-25400657 | None:intergenic | 35.0% | |
| TAAATTGATGTTGCAGTCCA+TGG | - | chr1.1:25400210-25400229 | MS.gene56099:intron | 35.0% | |
| TCTGTTAAAGATCCATTCAG+AGG | + | chr1.1:25400409-25400428 | None:intergenic | 35.0% | |
| TGAGAGGAAGCAAAAGAAAA+AGG | + | chr1.1:25399822-25399841 | None:intergenic | 35.0% | |
| TGCACCTGAAGAAAATTTCT+TGG | - | chr1.1:25402836-25402855 | MS.gene56099:intron | 35.0% | |
| TGTAATATCAAGGATCACCA+TGG | + | chr1.1:25400230-25400249 | None:intergenic | 35.0% | |
| TTATCTCTATTGCTGCTGAA+AGG | - | chr1.1:25404259-25404278 | MS.gene56099:CDS | 35.0% | |
| TTCCTCTCAAACTTCTCAAA+TGG | - | chr1.1:25399833-25399852 | MS.gene56099:intron | 35.0% | |
| TTTCAGTCTCATTGGAATGT+TGG | - | chr1.1:25402530-25402549 | MS.gene56099:intron | 35.0% | |
| ! | ACCAACATGGTTGTTTGTTA+AGG | + | chr1.1:25400523-25400542 | None:intergenic | 35.0% |
| ! | ACTCGACTTTAGTTACCTTT+TGG | - | chr1.1:25401070-25401089 | MS.gene56099:CDS | 35.0% |
| ! | AGAACGATGTGATGATGTTA+AGG | - | chr1.1:25403639-25403658 | MS.gene56099:intron | 35.0% |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | + | chr1.1:25402843-25402862 | None:intergenic | 35.0% |
| ! | CACTCGGTATGTAGTTTTTA+AGG | - | chr1.1:25399876-25399895 | MS.gene56099:intron | 35.0% |
| ! | CTCGACTTTAGTTACCTTTT+GGG | - | chr1.1:25401071-25401090 | MS.gene56099:CDS | 35.0% |
| ! | GAACGATGTGATGATGTTAA+GGG | - | chr1.1:25403640-25403659 | MS.gene56099:intron | 35.0% |
| ! | GATTCCTTATTTAGCCATCA+AGG | - | chr1.1:25401353-25401372 | MS.gene56099:intron | 35.0% |
| ! | GCTATACTTGAAGATTTTGC+TGG | - | chr1.1:25399759-25399778 | MS.gene56099:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr1.1:25401521-25401540 | None:intergenic | 35.0% |
| ! | GTTTCCTTGATGGCTAAATA+AGG | + | chr1.1:25401360-25401379 | None:intergenic | 35.0% |
| ! | TGAGTTTGTTTGAAAGAGGA+GGG | + | chr1.1:25399719-25399738 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr1.1:25401517-25401536 | None:intergenic | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | + | chr1.1:25401977-25401996 | None:intergenic | 35.0% |
| ! | TTGAGTTTGTTTGAAAGAGG+AGG | + | chr1.1:25399720-25399739 | None:intergenic | 35.0% |
| ! | TTTTTCGCAGATGTTGTGAT+TGG | - | chr1.1:25404078-25404097 | MS.gene56099:CDS | 35.0% |
| !! | AACAACCATGTTGGTTTGTT+TGG | - | chr1.1:25400528-25400547 | MS.gene56099:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1.1:25401418-25401437 | None:intergenic | 35.0% |
| !! | ACTTTAACTGATTTGGAGGT+GGG | - | chr1.1:25403834-25403853 | MS.gene56099:intron | 35.0% |
| !! | GTAGGTAATGGTAATGGTAA+TGG | - | chr1.1:25402759-25402778 | MS.gene56099:intron | 35.0% |
| !! | TACTTTAACTGATTTGGAGG+TGG | - | chr1.1:25403833-25403852 | MS.gene56099:intron | 35.0% |
| !! | TTGATCTGAGACAAGTGTTT+TGG | - | chr1.1:25400325-25400344 | MS.gene56099:intron | 35.0% |
| !! | TTTTGGGAGACAAAAGAAAG+TGG | + | chr1.1:25400151-25400170 | None:intergenic | 35.0% |
| ACCAGTTTCACCATCTGAAA+TGG | - | chr1.1:25400435-25400454 | MS.gene56099:CDS | 40.0% | |
| ACTCATCCTTTGATCCATCA+AGG | - | chr1.1:25403955-25403974 | MS.gene56099:intron | 40.0% | |
| ATGAAGAGTAGACATGTTGC+TGG | - | chr1.1:25403744-25403763 | MS.gene56099:intron | 40.0% | |
| ATTTCAGATGGTGAAACTGG+TGG | + | chr1.1:25400436-25400455 | None:intergenic | 40.0% | |
| CAACTATAGGTCCTGAGATT+CGG | + | chr1.1:25401778-25401797 | None:intergenic | 40.0% | |
| CTCATCCTTTGATCCATCAA+GGG | - | chr1.1:25403956-25403975 | MS.gene56099:intron | 40.0% | |
| GAACGTGACAAGAATTCCAT+TGG | + | chr1.1:25399645-25399664 | None:intergenic | 40.0% | |
| GAATATGATGTGTGGACTCA+AGG | - | chr1.1:25404225-25404244 | MS.gene56099:CDS | 40.0% | |
| GAGGAAGGAAAAGAAAAAGG+AGG | - | chr1.1:25402094-25402113 | MS.gene56099:intron | 40.0% | |
| GATAGTCTTCCTGATGTTCT+TGG | + | chr1.1:25400373-25400392 | None:intergenic | 40.0% | |
| GGAAAGAAGTGACTAAAGTG+AGG | - | chr1.1:25403610-25403629 | MS.gene56099:intron | 40.0% | |
| GGAGAGGAAGGAAAAGAAAA+AGG | - | chr1.1:25402091-25402110 | MS.gene56099:intron | 40.0% | |
| GGTTTGAAAACAATAACGCG+TGG | - | chr1.1:25404171-25404190 | MS.gene56099:CDS | 40.0% | |
| GTGTTCTATGCTTCTGTATG+TGG | - | chr1.1:25403313-25403332 | MS.gene56099:intron | 40.0% | |
| TAACAGTACACTGTACAGTG+AGG | + | chr1.1:25400602-25400621 | None:intergenic | 40.0% | |
| TATTGCTGCTGTAATTCCTG+TGG | - | chr1.1:25402725-25402744 | MS.gene56099:intron | 40.0% | |
| TCCATTTCAGATGGTGAAAC+TGG | + | chr1.1:25400439-25400458 | None:intergenic | 40.0% | |
| TGAAGAGTAGACATGTTGCT+GGG | - | chr1.1:25403745-25403764 | MS.gene56099:intron | 40.0% | |
| TGACACTCAGACGTAAATAC+TGG | + | chr1.1:25403285-25403304 | None:intergenic | 40.0% | |
| TGGAATTCTTGTCACGTTCA+TGG | - | chr1.1:25399646-25399665 | MS.gene56099:CDS | 40.0% | |
| TGGCGTTATCAAAGAAATGC+CGG | - | chr1.1:25404098-25404117 | MS.gene56099:CDS | 40.0% | |
| TGGCTGTTTGCATTGAAGAA+AGG | + | chr1.1:25400723-25400742 | None:intergenic | 40.0% | |
| TTACGTCTGAGTGTCATGTT+TGG | - | chr1.1:25403289-25403308 | MS.gene56099:intron | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | - | chr1.1:25402661-25402680 | MS.gene56099:intron | 40.0% | |
| TTTAAGAAGCTCACAACCTC+TGG | + | chr1.1:25402886-25402905 | None:intergenic | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | - | chr1.1:25402660-25402679 | MS.gene56099:intron | 40.0% | |
| ! | ATTGCTTTGTTCCGAATCTC+AGG | - | chr1.1:25401764-25401783 | MS.gene56099:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr1.1:25401518-25401537 | None:intergenic | 40.0% |
| ! | TATTGCTAATGGACCCCTTA+TGG | - | chr1.1:25401698-25401717 | MS.gene56099:CDS | 40.0% |
| ! | TTATCAAAGAAATGCCGGCT+TGG | - | chr1.1:25404103-25404122 | MS.gene56099:CDS | 40.0% |
| ! | TTGATATGCTGAACTGACTC+AGG | - | chr1.1:25399969-25399988 | MS.gene56099:intron | 40.0% |
| !! | AATGGTAATGGTAATGGTGG+TGG | - | chr1.1:25402765-25402784 | MS.gene56099:intron | 40.0% |
| !! | AGGTGGGTCTTGTTTCATTT+GGG | - | chr1.1:25403850-25403869 | MS.gene56099:intron | 40.0% |
| !! | ATGGTAATGGTAATGGTGGT+GGG | - | chr1.1:25402766-25402785 | MS.gene56099:intron | 40.0% |
| !! | GGTAATGGTAATGGTAATGG+TGG | - | chr1.1:25402762-25402781 | MS.gene56099:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1.1:25401656-25401675 | MS.gene56099:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1.1:25401675-25401656 | None:intergenic | 40.0% |
| AAGAATTCCATTGGGTCACG+AGG | + | chr1.1:25399636-25399655 | None:intergenic | 45.0% | |
| ACATTCACACGTGTCAGACA+TGG | + | chr1.1:25400931-25400950 | None:intergenic | 45.0% | |
| AGCTCCAATAGTAGCTTCAG+TGG | - | chr1.1:25402807-25402826 | MS.gene56099:intron | 45.0% | |
| AGTAGAGAATTGCTTGCCAG+AGG | - | chr1.1:25402867-25402886 | MS.gene56099:intron | 45.0% | |
| AGTGTTTGTCAGTTTCGTCG+CGG | + | chr1.1:25399934-25399953 | None:intergenic | 45.0% | |
| CAAGGGCCCTTAAAGAAGTT+TGG | - | chr1.1:25402700-25402719 | MS.gene56099:intron | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | + | chr1.1:25402744-25402763 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | - | chr1.1:25402741-25402760 | MS.gene56099:intron | 45.0% | |
| CGGGGATATTACAACGTTGA+CGG | - | chr1.1:25402373-25402392 | MS.gene56099:intron | 45.0% | |
| CGTCAACGTTGTAATATCCC+CGG | + | chr1.1:25402375-25402394 | None:intergenic | 45.0% | |
| GGACCCCTTATGGATAAACA+TGG | - | chr1.1:25401708-25401727 | MS.gene56099:CDS | 45.0% | |
| GGATCAAAGGATGAGTGTGA+AGG | + | chr1.1:25403951-25403970 | None:intergenic | 45.0% | |
| GGATCGTATCATGTCTCACT+CGG | - | chr1.1:25399860-25399879 | MS.gene56099:intron | 45.0% | |
| GGTTTGGATCGCTAAACACA+AGG | - | chr1.1:25402996-25403015 | MS.gene56099:intron | 45.0% | |
| TCAAAGGATGAGTGTGAAGG+TGG | + | chr1.1:25403948-25403967 | None:intergenic | 45.0% | |
| TCCATCAAGGGTTCGATCAT+TGG | - | chr1.1:25403968-25403987 | MS.gene56099:intron | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | - | chr1.1:25402662-25402681 | MS.gene56099:intron | 45.0% | |
| TGATTGCAGGTGAACTCCAT+TGG | - | chr1.1:25403422-25403441 | MS.gene56099:intron | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | + | chr1.1:25402814-25402833 | None:intergenic | 45.0% | |
| TTGAGCTGGAGACAAAGCTT+TGG | + | chr1.1:25399694-25399713 | None:intergenic | 45.0% | |
| TTGTCTGCAATTGCGTGCAA+AGG | - | chr1.1:25404021-25404040 | MS.gene56099:CDS | 45.0% | |
| ! | GAGGTATCTCCAAGAACATC+AGG | - | chr1.1:25400361-25400380 | MS.gene56099:intron | 45.0% |
| ! | TCGAACCCTTGATGGATCAA+AGG | + | chr1.1:25403964-25403983 | None:intergenic | 45.0% |
| ! | TGTGGACTCAAGGTGTTTCA+AGG | - | chr1.1:25404235-25404254 | MS.gene56099:CDS | 45.0% |
| ! | TTTTGGTATTGTGCAGCAGG+AGG | - | chr1.1:25400342-25400361 | MS.gene56099:intron | 45.0% |
| !! | CAAAGCTTTGGAGACTTCCA+TGG | + | chr1.1:25399682-25399701 | None:intergenic | 45.0% |
| !! | GAGGTGGGTCTTGTTTCATT+TGG | - | chr1.1:25403849-25403868 | MS.gene56099:intron | 45.0% |
| !! | GGTGGGTCTTGTTTCATTTG+GGG | - | chr1.1:25403851-25403870 | MS.gene56099:intron | 45.0% |
| !! | TGGTAATGGTAATGGTGGTG+GGG | - | chr1.1:25402767-25402786 | MS.gene56099:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1.1:25401655-25401674 | MS.gene56099:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1.1:25401674-25401655 | None:intergenic | 45.0% |
| !!! | GTGTTTTGGTATTGTGCAGC+AGG | - | chr1.1:25400339-25400358 | MS.gene56099:intron | 45.0% |
| AGAAACACCTCGTGACCCAA+TGG | - | chr1.1:25399626-25399645 | MS.gene56099:CDS | 50.0% | |
| CATTACAGAGTCTCTGCCAC+CGG | - | chr1.1:25402026-25402045 | MS.gene56099:intron | 50.0% | |
| CTTCTTAAACGCACTCGCAC+AGG | - | chr1.1:25402897-25402916 | MS.gene56099:intron | 50.0% | |
| GCCAATGATCGAACCCTTGA+TGG | + | chr1.1:25403972-25403991 | None:intergenic | 50.0% | |
| GGAAGACTATCACACAGCAG+TGG | - | chr1.1:25400382-25400401 | MS.gene56099:intron | 50.0% | |
| GGCTGCAACATTGAAGGCAA+GGG | - | chr1.1:25402683-25402702 | MS.gene56099:intron | 50.0% | |
| GGTGACAACCGTCGTTACTT+TGG | - | chr1.1:25404150-25404169 | MS.gene56099:CDS | 50.0% | |
| GTGTTTGTCAGTTTCGTCGC+GGG | + | chr1.1:25399933-25399952 | None:intergenic | 50.0% | |
| TCAAGGGTTCGATCATTGGC+TGG | - | chr1.1:25403972-25403991 | MS.gene56099:intron | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | - | chr1.1:25402286-25402305 | MS.gene56099:intron | 50.0% | |
| TCAGCTCCATGCTGCAGTTT+CGG | - | chr1.1:25402136-25402155 | MS.gene56099:intron | 50.0% | |
| TGAGCGTGATCACCTTGCTT+CGG | - | chr1.1:25402319-25402338 | MS.gene56099:intron | 50.0% | |
| TGCTCGTAAAGACGAGCAGA+TGG | - | chr1.1:25402217-25402236 | MS.gene56099:intron | 50.0% | |
| TTCATGGTCTGCTTCTGCCA+TGG | - | chr1.1:25399662-25399681 | MS.gene56099:CDS | 50.0% | |
| ! | AGCATGGAGCTGAGCATTGT+GGG | + | chr1.1:25402129-25402148 | None:intergenic | 50.0% |
| ! | ATTGGGTCACGAGGTGTTTC+TGG | + | chr1.1:25399627-25399646 | None:intergenic | 50.0% |
| ! | TATGCTGAACTGACTCAGGC+TGG | - | chr1.1:25399973-25399992 | MS.gene56099:intron | 50.0% |
| ! | TTGGGTCACGAGGTGTTTCT+GGG | + | chr1.1:25399626-25399645 | None:intergenic | 50.0% |
| !! | GGTAATGGTAATGGTGGTGG+GGG | - | chr1.1:25402768-25402787 | MS.gene56099:intron | 50.0% |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | - | chr1.1:25402345-25402364 | MS.gene56099:intron | 50.0% |
| ACATTGAGCCGCCACCAATG+TGG | + | chr1.1:25402273-25402292 | None:intergenic | 55.0% | |
| ACCTGACGAAGCAGCAGTTG+CGG | + | chr1.1:25402198-25402217 | None:intergenic | 55.0% | |
| CACAGCAGTGGACCTCTGAA+TGG | - | chr1.1:25400394-25400413 | MS.gene56099:intron | 55.0% | |
| CAGAGCTAACCACCGAAGCA+AGG | + | chr1.1:25402334-25402353 | None:intergenic | 55.0% | |
| CAGCAACCGAAACTGCAGCA+TGG | + | chr1.1:25402145-25402164 | None:intergenic | 55.0% | |
| CATGCTGCAGTTTCGGTTGC+TGG | - | chr1.1:25402143-25402162 | MS.gene56099:intron | 55.0% | |
| CCTTCTAGCAAGTGACGTCC+AGG | + | chr1.1:25404129-25404148 | None:intergenic | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | + | chr1.1:25402028-25402047 | None:intergenic | 55.0% | |
| GAAAGAGGAGGGAGTTGAGC+TGG | + | chr1.1:25399708-25399727 | None:intergenic | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | - | chr1.1:25402235-25402254 | MS.gene56099:intron | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | - | chr1.1:25402232-25402251 | MS.gene56099:intron | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | - | chr1.1:25402682-25402701 | MS.gene56099:intron | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | - | chr1.1:25402293-25402312 | MS.gene56099:intron | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | - | chr1.1:25402292-25402311 | MS.gene56099:intron | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | - | chr1.1:25402294-25402313 | MS.gene56099:intron | 55.0% | |
| ! | CAGCATGGAGCTGAGCATTG+TGG | + | chr1.1:25402130-25402149 | None:intergenic | 55.0% |
| ! | CCTGGACGTCACTTGCTAGA+AGG | - | chr1.1:25404126-25404145 | MS.gene56099:CDS | 55.0% |
| ! | CTGAACTGACTCAGGCTGGT+CGG | - | chr1.1:25399977-25399996 | MS.gene56099:intron | 55.0% |
| ! | GGACGTCACTTGCTAGAAGG+TGG | - | chr1.1:25404129-25404148 | MS.gene56099:CDS | 55.0% |
| !! | AAAGAAATGCCGGCTTGGCC+TGG | - | chr1.1:25404108-25404127 | MS.gene56099:CDS | 55.0% |
| !! | GTCACGAGGTGTTTCTGGGT+CGG | + | chr1.1:25399622-25399641 | None:intergenic | 55.0% |
| !! | TCACGAGGTGTTTCTGGGTC+GGG | + | chr1.1:25399621-25399640 | None:intergenic | 55.0% |
| AAGTGACGTCCAGGCCAAGC+CGG | + | chr1.1:25404120-25404139 | None:intergenic | 60.0% | |
| CCCGGCAGACCTCACATTCA+CGG | + | chr1.1:25402357-25402376 | None:intergenic | 60.0% | |
| CCGTGAATGTGAGGTCTGCC+GGG | - | chr1.1:25402354-25402373 | MS.gene56099:intron | 60.0% | |
| CGTGAATGTGAGGTCTGCCG+GGG | - | chr1.1:25402355-25402374 | MS.gene56099:intron | 60.0% | |
| CTGCTGCTGCGACAGGTATG+CGG | - | chr1.1:25402396-25402415 | MS.gene56099:intron | 60.0% | |
| GACAGACATGGCGGTAGCGT+CGG | - | chr1.1:25402244-25402263 | MS.gene56099:intron | 60.0% | |
| GAGGTGGCTGAAGGAGAGGA+AGG | - | chr1.1:25402079-25402098 | MS.gene56099:intron | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | - | chr1.1:25402353-25402372 | MS.gene56099:intron | 60.0% | |
| GCGTGATCACCTTGCTTCGG+TGG | - | chr1.1:25402322-25402341 | MS.gene56099:intron | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | - | chr1.1:25402677-25402696 | MS.gene56099:intron | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | + | chr1.1:25402177-25402196 | None:intergenic | 60.0% | |
| GGTGGGGGCAGTGGTAGTAA+TGG | - | chr1.1:25402783-25402802 | MS.gene56099:intron | 60.0% | |
| TACAGAGTCTCTGCCACCGG+CGG | - | chr1.1:25402029-25402048 | MS.gene56099:intron | 60.0% | |
| TGAGGCTGCTGAGGCTATGG+GGG | - | chr1.1:25402295-25402314 | MS.gene56099:intron | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | - | chr1.1:25402163-25402182 | MS.gene56099:intron | 60.0% | |
| ! | GGTGGCGGCTCAATGTGTTG+AGG | - | chr1.1:25402277-25402296 | MS.gene56099:intron | 60.0% |
| GTCGGCTGCCACATTGGTGG+CGG | - | chr1.1:25402262-25402281 | MS.gene56099:intron | 65.0% | |
| TGGGGAGGTGGCTGAAGGAG+AGG | - | chr1.1:25402075-25402094 | MS.gene56099:intron | 65.0% | |
| TTGACGGCTGCTGCTGCGAC+AGG | - | chr1.1:25402389-25402408 | MS.gene56099:intron | 65.0% | |
| ! | GCCGCAACTGCTGCTTCGTC+AGG | - | chr1.1:25402194-25402213 | MS.gene56099:intron | 65.0% |
| !! | AGCGTCGGCTGCCACATTGG+TGG | - | chr1.1:25402259-25402278 | MS.gene56099:intron | 65.0% |
| !! | GGTAATGGTGGTGGGGGCAG+TGG | - | chr1.1:25402774-25402793 | MS.gene56099:intron | 65.0% |
| !! | GGTAGCGTCGGCTGCCACAT+TGG | - | chr1.1:25402256-25402275 | MS.gene56099:intron | 65.0% |
| AGAGTCTCTGCCACCGGCGG+TGG | - | chr1.1:25402032-25402051 | MS.gene56099:intron | 70.0% | |
| GACGGTGGGGAGGTGGCTGA+AGG | - | chr1.1:25402070-25402089 | MS.gene56099:intron | 70.0% | |
| GAGGCGGAGGGAAGACGGTG+GGG | - | chr1.1:25402057-25402076 | MS.gene56099:intron | 70.0% | |
| GAGGGAAGACGGTGGGGAGG+TGG | - | chr1.1:25402063-25402082 | MS.gene56099:intron | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | - | chr1.1:25402056-25402075 | MS.gene56099:intron | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | - | chr1.1:25402052-25402071 | MS.gene56099:intron | 70.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | - | chr1.1:25402055-25402074 | MS.gene56099:intron | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | - | chr1.1:25402060-25402079 | MS.gene56099:intron | 75.0% | |
| GTCTCTGCCACCGGCGGTGG+CGG | - | chr1.1:25402035-25402054 | MS.gene56099:intron | 75.0% | |
| !! | TCTGCCACCGGCGGTGGCGG+AGG | - | chr1.1:25402038-25402057 | MS.gene56099:intron | 80.0% |
| ! | CCCTCCGCCTCCGCCACCGC+CGG | + | chr1.1:25402048-25402067 | None:intergenic | 85.0% |
| ! | TCCGCCTCCGCCACCGCCGG+TGG | + | chr1.1:25402045-25402064 | None:intergenic | 85.0% |
| !!! | ACCGGCGGTGGCGGAGGCGG+AGG | - | chr1.1:25402044-25402063 | MS.gene56099:intron | 85.0% |
| !!! | CCGGCGGTGGCGGAGGCGGA+GGG | - | chr1.1:25402045-25402064 | MS.gene56099:intron | 85.0% |
| !!! | GCCACCGGCGGTGGCGGAGG+CGG | - | chr1.1:25402041-25402060 | MS.gene56099:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 25399588 | 25404305 | 25399588 | ID=MS.gene56099 |
| chr1.1 | mRNA | 25399588 | 25404305 | 25399588 | ID=MS.gene56099.t1;Parent=MS.gene56099 |
| chr1.1 | exon | 25404012 | 25404305 | 25404012 | ID=MS.gene56099.t1.exon1;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25404012 | 25404305 | 25404012 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25403425 | 25403535 | 25403425 | ID=MS.gene56099.t1.exon2;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25403425 | 25403535 | 25403425 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25401483 | 25401924 | 25401483 | ID=MS.gene56099.t1.exon3;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25401483 | 25401924 | 25401483 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25400975 | 25401220 | 25400975 | ID=MS.gene56099.t1.exon4;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25400975 | 25401220 | 25400975 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25400413 | 25400462 | 25400413 | ID=MS.gene56099.t1.exon5;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25400413 | 25400462 | 25400413 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25400104 | 25400161 | 25400104 | ID=MS.gene56099.t1.exon6;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25400104 | 25400161 | 25400104 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| chr1.1 | exon | 25399588 | 25399805 | 25399588 | ID=MS.gene56099.t1.exon7;Parent=MS.gene56099.t1 |
| chr1.1 | CDS | 25399588 | 25399805 | 25399588 | ID=cds.MS.gene56099.t1;Parent=MS.gene56099.t1 |
| Gene Sequence |
| Protein sequence |
