Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053332.t1 | XP_013467026.1 | 96 | 473 | 16 | 2 | 1 | 472 | 1 | 471 | 1.50E-164 | 589.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053332.t1 | Q8W4K5 | 55.9 | 469 | 187 | 10 | 13 | 469 | 30 | 490 | 1.2e-88 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053332.t1 | A0A072VHG4 | 96.0 | 473 | 16 | 2 | 1 | 472 | 1 | 471 | 1.1e-164 | 589.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053332 | MS.gene054473 | 0.808985 | 2.37E-50 | -1.69E-46 |
| MS.gene053332 | MS.gene063197 | 0.929989 | 3.14E-93 | -1.69E-46 |
| MS.gene053332 | MS.gene37213 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene053332 | MS.gene56099 | 0.948217 | 1.46E-106 | -1.69E-46 |
| MS.gene053332 | MS.gene66923 | 0.838014 | 3.70E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053332 | MS.gene56099 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053332.t1 | MTR_1g041395 | 96.406 | 473 | 14 | 2 | 1 | 472 | 1 | 471 | 0.0 | 730 |
| MS.gene053332.t1 | MTR_1g041395 | 96.195 | 473 | 14 | 3 | 1 | 472 | 1 | 470 | 0.0 | 723 |
| MS.gene053332.t1 | MTR_1g041395 | 93.528 | 479 | 22 | 3 | 1 | 472 | 1 | 477 | 0.0 | 723 |
| MS.gene053332.t1 | MTR_1g102980 | 69.628 | 484 | 104 | 10 | 1 | 470 | 1 | 455 | 3.35e-173 | 494 |
| MS.gene053332.t1 | MTR_1g041395 | 96.199 | 342 | 11 | 1 | 131 | 472 | 1 | 340 | 1.07e-164 | 468 |
| MS.gene053332.t1 | MTR_1g071450 | 66.738 | 469 | 133 | 11 | 13 | 469 | 26 | 483 | 2.49e-161 | 465 |
| MS.gene053332.t1 | MTR_7g095500 | 64.035 | 456 | 137 | 9 | 11 | 454 | 18 | 458 | 4.81e-154 | 450 |
| MS.gene053332.t1 | MTR_1g102980 | 81.848 | 303 | 47 | 2 | 169 | 470 | 35 | 330 | 8.30e-127 | 372 |
| MS.gene053332.t1 | MTR_3g110182 | 38.646 | 458 | 195 | 13 | 13 | 464 | 33 | 410 | 6.64e-65 | 215 |
| MS.gene053332.t1 | MTR_4g039910 | 48.855 | 262 | 98 | 5 | 168 | 420 | 99 | 333 | 1.15e-49 | 172 |
| MS.gene053332.t1 | MTR_5g012870 | 37.793 | 299 | 144 | 6 | 170 | 459 | 113 | 378 | 6.92e-46 | 164 |
| MS.gene053332.t1 | MTR_3g110182 | 39.186 | 393 | 154 | 12 | 13 | 399 | 31 | 344 | 1.76e-45 | 162 |
| MS.gene053332.t1 | MTR_4g019730 | 76.596 | 47 | 11 | 0 | 386 | 432 | 1 | 47 | 3.70e-18 | 80.9 |
| MS.gene053332.t1 | MTR_4g129510 | 33.108 | 296 | 153 | 7 | 170 | 462 | 118 | 371 | 1.49e-15 | 78.6 |
| MS.gene053332.t1 | MTR_4g129510 | 33.784 | 296 | 151 | 7 | 170 | 462 | 87 | 340 | 8.53e-15 | 75.9 |
| MS.gene053332.t1 | MTR_4g129510 | 40.000 | 210 | 90 | 3 | 170 | 377 | 118 | 293 | 8.93e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053332.t1 | AT4G14740 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| MS.gene053332.t1 | AT4G14740 | 69.182 | 477 | 129 | 6 | 1 | 465 | 1 | 471 | 0.0 | 580 |
| MS.gene053332.t1 | AT3G22810 | 69.672 | 488 | 113 | 10 | 1 | 470 | 1 | 471 | 0.0 | 576 |
| MS.gene053332.t1 | AT5G43870 | 63.866 | 476 | 126 | 10 | 6 | 468 | 10 | 452 | 1.11e-173 | 496 |
| MS.gene053332.t1 | AT4G14740 | 68.523 | 413 | 112 | 6 | 1 | 401 | 1 | 407 | 2.23e-165 | 473 |
| MS.gene053332.t1 | AT3G22810 | 68.974 | 419 | 95 | 10 | 1 | 401 | 1 | 402 | 7.11e-160 | 459 |
| MS.gene053332.t1 | AT4G14740 | 74.006 | 327 | 78 | 3 | 144 | 465 | 8 | 332 | 6.98e-146 | 420 |
| MS.gene053332.t1 | AT3G22810 | 74.695 | 328 | 73 | 3 | 150 | 470 | 9 | 333 | 1.81e-145 | 419 |
| MS.gene053332.t1 | AT3G63300 | 62.979 | 470 | 152 | 11 | 13 | 469 | 30 | 490 | 5.36e-144 | 422 |
| MS.gene053332.t1 | AT5G43870 | 63.325 | 409 | 104 | 10 | 6 | 401 | 10 | 385 | 7.02e-132 | 387 |
| MS.gene053332.t1 | AT3G63300 | 69.872 | 312 | 86 | 4 | 159 | 469 | 28 | 332 | 4.71e-104 | 314 |
| MS.gene053332.t1 | AT4G32780 | 38.344 | 459 | 174 | 14 | 13 | 460 | 35 | 395 | 1.08e-44 | 161 |
| MS.gene053332.t1 | AT4G32780 | 38.344 | 459 | 174 | 14 | 13 | 460 | 54 | 414 | 1.55e-44 | 161 |
| MS.gene053332.t1 | AT4G17350 | 39.667 | 300 | 140 | 8 | 170 | 459 | 115 | 383 | 1.94e-43 | 158 |
| MS.gene053332.t1 | AT5G47440 | 37.979 | 287 | 146 | 5 | 178 | 461 | 131 | 388 | 1.10e-39 | 148 |
| MS.gene053332.t1 | AT4G16670 | 35.906 | 298 | 162 | 5 | 170 | 459 | 132 | 408 | 8.42e-38 | 143 |
| MS.gene053332.t1 | AT4G16670 | 39.749 | 239 | 116 | 4 | 170 | 400 | 132 | 350 | 1.27e-30 | 122 |
| MS.gene053332.t1 | AT4G16670 | 35.448 | 268 | 116 | 5 | 170 | 400 | 132 | 379 | 6.56e-25 | 106 |
| MS.gene053332.t1 | AT5G57770 | 38.525 | 244 | 114 | 6 | 170 | 410 | 128 | 338 | 2.01e-20 | 93.6 |
| MS.gene053332.t1 | AT5G57770 | 36.177 | 293 | 137 | 8 | 122 | 394 | 63 | 325 | 7.17e-20 | 90.9 |
Find 133 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTCCAAACTTCTTTA+AGG | 0.144092 | 1.4:+25899639 | None:intergenic |
| TGAGAGGAAGCAAAAGAAAA+AGG | 0.166140 | 1.4:+25902247 | None:intergenic |
| ATTGGGTCACGAGGTGTTTC+TGG | 0.168206 | 1.4:+25902442 | None:intergenic |
| GAGTCTATTATAACTGTTTC+TGG | 0.188381 | 1.4:-25902274 | MS.gene053332:CDS |
| TCAAACTTCTCAAATGGTTT+TGG | 0.205061 | 1.4:-25902227 | MS.gene053332:CDS |
| CATGCTGCAGTTTCGGTTGC+TGG | 0.221538 | 1.4:-25900203 | MS.gene053332:CDS |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1.4:-25899510 | MS.gene053332:CDS |
| AATATTCCAAACTTCTTTAA+GGG | 0.302087 | 1.4:+25899640 | None:intergenic |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1.4:-25899609 | MS.gene053332:CDS |
| GGAGAGGAAGGAAAAGAAAA+AGG | 0.308251 | 1.4:-25900255 | MS.gene053332:CDS |
| GATAGTCTTCCTGATGTTCT+TGG | 0.310186 | 1.4:+25901690 | None:intergenic |
| GCCGCAACTGCTGCTTCGTC+AGG | 0.322180 | 1.4:-25900152 | MS.gene053332:CDS |
| CAAGGGCCCTTAAAGAAGTT+TGG | 0.334393 | 1.4:-25899646 | MS.gene053332:CDS |
| TGGAATTCTTGTCACGTTCA+TGG | 0.356920 | 1.4:-25902420 | MS.gene053332:CDS |
| GCCACCGGCGGTGGCGGAGG+CGG | 0.357360 | 1.4:-25900305 | MS.gene053332:CDS |
| TCAGCTCCATGCTGCAGTTT+CGG | 0.359795 | 1.4:-25900210 | MS.gene053332:CDS |
| GAGGGAAGACGGTGGGGAGG+TGG | 0.359935 | 1.4:-25900283 | MS.gene053332:CDS |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.362149 | 1.4:-25899993 | MS.gene053332:CDS |
| ACCAGTTTCACCTTCTGAAA+TGG | 0.365421 | 1.4:-25901625 | MS.gene053332:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1.4:-25900054 | MS.gene053332:CDS |
| ACCGGCGGTGGCGGAGGCGG+AGG | 0.377516 | 1.4:-25900302 | MS.gene053332:CDS |
| GTCTCTGCCACCGGCGGTGG+CGG | 0.378739 | 1.4:-25900311 | MS.gene053332:CDS |
| TTCTGAAATGGATGATTTCA+AGG | 0.395872 | 1.4:-25901613 | MS.gene053332:intron |
| TTGGGTCACGAGGTGTTTCT+GGG | 0.401162 | 1.4:+25902443 | None:intergenic |
| GAAAGAGGAGGGAGTTGAGC+TGG | 0.402468 | 1.4:+25902361 | None:intergenic |
| AGCATGGAGCTGAGCATTGT+GGG | 0.402854 | 1.4:+25900220 | None:intergenic |
| TCCATTTCAGAAGGTGAAAC+TGG | 0.405672 | 1.4:+25901624 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1.4:+25899535 | None:intergenic |
| GGTAGCGTCGGCTGCCACAT+TGG | 0.419914 | 1.4:-25900090 | MS.gene053332:CDS |
| TTGAGCTGGAGACAAAGCTT+TGG | 0.431363 | 1.4:+25902375 | None:intergenic |
| TTCCTCTCAAACTTCTCAAA+TGG | 0.431509 | 1.4:-25902233 | MS.gene053332:CDS |
| AAAGAAATGCCGGCTTGGCC+TGG | 0.432592 | 1.4:-25898134 | MS.gene053332:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1.4:-25899509 | MS.gene053332:CDS |
| ATGGTAATGGTAATGGTGGT+GGG | 0.434293 | 1.4:-25899580 | MS.gene053332:CDS |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1.4:-25900053 | MS.gene053332:CDS |
| TGTGGACTCAAGGTGTTTCA+AGG | 0.439083 | 1.4:-25898007 | MS.gene053332:CDS |
| AATGGTAATGGTAATGGTGG+TGG | 0.445582 | 1.4:-25899581 | MS.gene053332:CDS |
| TGCTTTCAGGTGAACTCCAT+TGG | 0.445858 | 1.4:-25898848 | MS.gene053332:intron |
| GTCACGAGGTGTTTCTGGGT+CGG | 0.446288 | 1.4:+25902447 | None:intergenic |
| TCTGCCACCGGCGGTGGCGG+AGG | 0.450077 | 1.4:-25900308 | MS.gene053332:CDS |
| TCACGAGGTGTTTCTGGGTC+GGG | 0.454736 | 1.4:+25902448 | None:intergenic |
| CCTGGACGTCACTTGCTAGA+AGG | 0.455426 | 1.4:-25898116 | MS.gene053332:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1.4:-25900286 | MS.gene053332:CDS |
| CCCTCCGCCTCCGCCACCGC+CGG | 0.464687 | 1.4:+25900301 | None:intergenic |
| GAGGTGGCTGAAGGAGAGGA+AGG | 0.465983 | 1.4:-25900267 | MS.gene053332:CDS |
| CCGTGAATGTGAGGTCTGCC+GGG | 0.466362 | 1.4:-25899992 | MS.gene053332:CDS |
| TTGAGTTTGTTTGAAAGAGG+AGG | 0.469011 | 1.4:+25902349 | None:intergenic |
| TTTAAGAAGCTCACAACCTC+TGG | 0.469999 | 1.4:+25899463 | None:intergenic |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1.4:-25899599 | MS.gene053332:CDS |
| CCGGCGGTGGCGGAGGCGGA+GGG | 0.476107 | 1.4:-25900301 | MS.gene053332:CDS |
| GAGGTATCTCCAAGAACATC+AGG | 0.477235 | 1.4:-25901699 | MS.gene053332:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1.4:-25900294 | MS.gene053332:CDS |
| TTGACGGCTGCTGCTGCGAC+AGG | 0.482568 | 1.4:-25899957 | MS.gene053332:intron |
| ATGAAGAGTAGACATGTTGC+TGG | 0.483425 | 1.4:-25898526 | MS.gene053332:CDS |
| GTAGGTAATGGTAATGGTAA+TGG | 0.484250 | 1.4:-25899587 | MS.gene053332:CDS |
| TTGTTGAGTTTGTTTGAAAG+AGG | 0.487700 | 1.4:+25902346 | None:intergenic |
| TGAGTTTGTTTGAAAGAGGA+GGG | 0.490544 | 1.4:+25902350 | None:intergenic |
| TGAGCGTGATCACCTTGCTT+CGG | 0.492692 | 1.4:-25900027 | MS.gene053332:CDS |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1.4:-25900289 | MS.gene053332:CDS |
| AGAGTCTCTGCCACCGGCGG+TGG | 0.498489 | 1.4:-25900314 | MS.gene053332:CDS |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1.4:-25899685 | MS.gene053332:intron |
| GGTGACAACCGTCGTTACTT+TGG | 0.503924 | 1.4:-25898092 | MS.gene053332:CDS |
| CCCGGCAGACCTCACATTCA+CGG | 0.504849 | 1.4:+25899992 | None:intergenic |
| TCCGCCTCCGCCACCGCCGG+TGG | 0.505322 | 1.4:+25900304 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1.4:-25899686 | MS.gene053332:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1.4:-25899669 | MS.gene053332:CDS |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1.4:-25900291 | MS.gene053332:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1.4:-25900052 | MS.gene053332:CDS |
| GAACGTGACAAGAATTCCAT+TGG | 0.511728 | 1.4:+25902424 | None:intergenic |
| TGGGGAGGTGGCTGAAGGAG+AGG | 0.513502 | 1.4:-25900271 | MS.gene053332:CDS |
| GACAGACATGGCGGTAGCGT+CGG | 0.513746 | 1.4:-25900102 | MS.gene053332:CDS |
| CACAGCAGTGGACCTCTGAA+TGG | 0.517311 | 1.4:-25901666 | MS.gene053332:CDS |
| GACGGTGGGGAGGTGGCTGA+AGG | 0.519611 | 1.4:-25900276 | MS.gene053332:CDS |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1.4:-25900290 | MS.gene053332:CDS |
| GTCGGCTGCCACATTGGTGG+CGG | 0.524542 | 1.4:-25900084 | MS.gene053332:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1.4:+25899605 | None:intergenic |
| CTTCTTAAACGCACTCGCAC+AGG | 0.525523 | 1.4:-25899449 | MS.gene053332:intron |
| TTCATGGTCTGCTTCTGCCA+TGG | 0.527044 | 1.4:-25902404 | MS.gene053332:CDS |
| TTATCAAAGAAATGCCGGCT+TGG | 0.527997 | 1.4:-25898139 | MS.gene053332:CDS |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1.4:+25900372 | None:intergenic |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1.4:-25899664 | MS.gene053332:CDS |
| CGGGGATATTACAACGTTGA+CGG | 0.533765 | 1.4:-25899973 | MS.gene053332:CDS |
| TGGCGTTATCAAAGAAATGC+CGG | 0.537650 | 1.4:-25898144 | MS.gene053332:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1.4:-25900051 | MS.gene053332:CDS |
| AGCGTCGGCTGCCACATTGG+TGG | 0.546806 | 1.4:-25900087 | MS.gene053332:CDS |
| CAAAGCTTTGGAGACTTCCA+TGG | 0.548578 | 1.4:+25902387 | None:intergenic |
| CAGCATGGAGCTGAGCATTG+TGG | 0.557047 | 1.4:+25900219 | None:intergenic |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1.4:+25900172 | None:intergenic |
| CCTTCTAGCAAGTGACGTCC+AGG | 0.563097 | 1.4:+25898116 | None:intergenic |
| TTGAAATCATCCATTTCAGA+AGG | 0.569576 | 1.4:+25901615 | None:intergenic |
| AACGTGACAAGAATTCCATT+GGG | 0.572460 | 1.4:+25902425 | None:intergenic |
| ACCTGACGAAGCAGCAGTTG+CGG | 0.576149 | 1.4:+25900151 | None:intergenic |
| AAGTGACGTCCAGGCCAAGC+CGG | 0.581177 | 1.4:+25898125 | None:intergenic |
| GGATCGTATCATGTCTCACT+CGG | 0.582016 | 1.4:-25902206 | MS.gene053332:intron |
| AAGTATAGCAGCATTTGAAG+AGG | 0.585192 | 1.4:+25902321 | None:intergenic |
| GGTAATGGTAATGGTGGTGG+GGG | 0.586229 | 1.4:-25899578 | MS.gene053332:CDS |
| TTATCTCTATTGCTGCTGAA+AGG | 0.588258 | 1.4:-25897983 | MS.gene053332:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1.4:-25899663 | MS.gene053332:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1.4:-25900129 | MS.gene053332:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1.4:-25899605 | MS.gene053332:CDS |
| AATTTGGTAGGTAATGGTAA+TGG | 0.595486 | 1.4:-25899593 | MS.gene053332:CDS |
| CGTCAACGTTGTAATATCCC+CGG | 0.596809 | 1.4:+25899974 | None:intergenic |
| AACCATTTGAGAAGTTTGAG+AGG | 0.597240 | 1.4:+25902231 | None:intergenic |
| ATCAAAGAGAATATGATGTG+TGG | 0.600476 | 1.4:-25898025 | MS.gene053332:CDS |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.602071 | 1.4:-25900001 | MS.gene053332:CDS |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1.4:+25900321 | None:intergenic |
| TACAGAGTCTCTGCCACCGG+CGG | 0.605030 | 1.4:-25900317 | MS.gene053332:CDS |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1.4:-25900320 | MS.gene053332:CDS |
| GAATATGATGTGTGGACTCA+AGG | 0.605562 | 1.4:-25898017 | MS.gene053332:CDS |
| AGAAACACCTCGTGACCCAA+TGG | 0.606803 | 1.4:-25902440 | MS.gene053332:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1.4:-25900183 | MS.gene053332:CDS |
| TGGTAATGGTAATGGTGGTG+GGG | 0.612875 | 1.4:-25899579 | MS.gene053332:CDS |
| CAGAGCTAACGACCGAAGCA+AGG | 0.613746 | 1.4:+25900015 | None:intergenic |
| GGTAATGGTAATGGTAATGG+TGG | 0.614443 | 1.4:-25899584 | MS.gene053332:CDS |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1.4:-25899539 | MS.gene053332:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.620073 | 1.4:-25900060 | MS.gene053332:CDS |
| AGTAGAGAATTGCTTGCCAG+AGG | 0.621265 | 1.4:-25899479 | MS.gene053332:CDS |
| AAGAATTCCATTGGGTCACG+AGG | 0.624678 | 1.4:+25902433 | None:intergenic |
| CAGCAACCGAAACTGCAGCA+TGG | 0.627948 | 1.4:+25900204 | None:intergenic |
| TGAAGAGTAGACATGTTGCT+GGG | 0.634135 | 1.4:-25898525 | MS.gene053332:CDS |
| ATTTCAGAAGGTGAAACTGG+TGG | 0.639220 | 1.4:+25901627 | None:intergenic |
| TATTGCTGCTGTAATTCCTG+TGG | 0.643534 | 1.4:-25899621 | MS.gene053332:CDS |
| TTATATAAACAGAATGAACC+AGG | 0.647298 | 1.4:-25898811 | MS.gene053332:intron |
| TCTGTTAAAGATCCATTCAG+AGG | 0.654153 | 1.4:+25901654 | None:intergenic |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1.4:-25900114 | MS.gene053332:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1.4:-25899684 | MS.gene053332:intron |
| GGACGTCACTTGCTAGAAGG+TGG | 0.663656 | 1.4:-25898113 | MS.gene053332:CDS |
| GGAAGACTATCACACAGCAG+TGG | 0.682507 | 1.4:-25901678 | MS.gene053332:CDS |
| CGTGAATGTGAGGTCTGCCG+GGG | 0.682902 | 1.4:-25899991 | MS.gene053332:CDS |
| GGTTTGAAAACAATAACGCG+TGG | 0.695099 | 1.4:-25898071 | MS.gene053332:CDS |
| GGTGGCGGCTCAATGTGTTG+AGG | 0.700934 | 1.4:-25900069 | MS.gene053332:CDS |
| ACATTGAGCCGCCACCAATG+TGG | 0.704591 | 1.4:+25900076 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1.4:-25900111 | MS.gene053332:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATACATAATTTATTAA+TGG | - | chr1.4:25900011-25900030 | MS.gene053332:CDS | 10.0% |
| !! | TTTAGTAAAATTATAATCAA+TGG | + | chr1.4:25899215-25899234 | None:intergenic | 10.0% |
| !! | ATAATTGAAATGAAAAGAAA+AGG | + | chr1.4:25901673-25901692 | None:intergenic | 15.0% |
| !! | ATTAAAACTCTTATAATTGA+TGG | + | chr1.4:25901736-25901755 | None:intergenic | 15.0% |
| !! | CATGAAATTAATCATAAAAA+AGG | - | chr1.4:25900546-25900565 | MS.gene053332:intron | 15.0% |
| !! | TAAAATACTATATGCAAAAA+TGG | + | chr1.4:25898275-25898294 | None:intergenic | 15.0% |
| !! | TCAATATATATAACAATATG+TGG | + | chr1.4:25899345-25899364 | None:intergenic | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | - | chr1.4:25900719-25900738 | MS.gene053332:intron | 15.0% |
| !!! | TTAAATTTTTGTTTTTCAGT+TGG | - | chr1.4:25901440-25901459 | MS.gene053332:intron | 15.0% |
| !!! | TTATTCTTTAAACTTTGAAA+TGG | - | chr1.4:25902058-25902077 | MS.gene053332:intron | 15.0% |
| !!! | TTGAAATTTTTCACTTTTAA+AGG | + | chr1.4:25899558-25899577 | None:intergenic | 15.0% |
| !!! | TTTAAAATTCAAGTTATGTT+TGG | + | chr1.4:25899123-25899142 | None:intergenic | 15.0% |
| !! | AAAAACAAAACAAACAACAA+TGG | - | chr1.4:25897963-25897982 | MS.gene053332:CDS | 20.0% |
| !! | AAAGATATCAACTGTTTAAA+TGG | - | chr1.4:25902180-25902199 | MS.gene053332:intron | 20.0% |
| !! | AATATTCCAAACTTCTTTAA+GGG | + | chr1.4:25900800-25900819 | None:intergenic | 20.0% |
| !! | AATTCTCAAATATATATACC+TGG | + | chr1.4:25901647-25901666 | None:intergenic | 20.0% |
| !! | ACTATAATTACACATAAAAG+AGG | + | chr1.4:25899588-25899607 | None:intergenic | 20.0% |
| !! | AGAAAGGAAAAAAAAAACAA+TGG | - | chr1.4:25900682-25900701 | MS.gene053332:intron | 20.0% |
| !! | CACTTTAATTAAAGCTAATT+TGG | + | chr1.4:25899276-25899295 | None:intergenic | 20.0% |
| !! | CTATAATTACACATAAAAGA+GGG | + | chr1.4:25899587-25899606 | None:intergenic | 20.0% |
| !! | TACATCTTTCTTAATTTCAT+AGG | - | chr1.4:25898851-25898870 | MS.gene053332:intron | 20.0% |
| !! | TGTAAACAATCACAAATAAA+AGG | + | chr1.4:25900528-25900547 | None:intergenic | 20.0% |
| !!! | AAAAGCATAGAGTATATAAT+GGG | + | chr1.4:25901474-25901493 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTAAGTTATTAC+CGG | - | chr1.4:25901349-25901368 | MS.gene053332:intron | 20.0% |
| !!! | GCATTTTTTGTGATATATAT+TGG | + | chr1.4:25899940-25899959 | None:intergenic | 20.0% |
| !!! | GCTGTTTTATTTTTTGTAAA+GGG | + | chr1.4:25899613-25899632 | None:intergenic | 20.0% |
| !!! | GTGTTTCTTTTTATGTTTAA+AGG | - | chr1.4:25901541-25901560 | MS.gene053332:intron | 20.0% |
| !!! | TCTAATTTGAAACTAGAATT+CGG | + | chr1.4:25901141-25901160 | None:intergenic | 20.0% |
| !!! | TGCTGTTTTATTTTTTGTAA+AGG | + | chr1.4:25899614-25899633 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTCAAAACTTTTT+GGG | - | chr1.4:25898933-25898952 | MS.gene053332:intron | 20.0% |
| !!! | TTGTTTTTCTCAAAACTTTT+TGG | - | chr1.4:25898932-25898951 | MS.gene053332:intron | 20.0% |
| !!! | TTTTTGTGATATATATTGGT+GGG | + | chr1.4:25899936-25899955 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATATATATTGG+TGG | + | chr1.4:25899937-25899956 | None:intergenic | 20.0% |
| ! | AAAAACCATGTTTATCCATA+AGG | + | chr1.4:25899807-25899826 | None:intergenic | 25.0% |
| ! | AAAACCATGTTTATCCATAA+GGG | + | chr1.4:25899806-25899825 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAAACAATGG+TGG | - | chr1.4:25900685-25900704 | MS.gene053332:intron | 25.0% |
| ! | AATTTGGAAGTGACAAAAAA+TGG | + | chr1.4:25898553-25898572 | None:intergenic | 25.0% |
| ! | ACTACAATTTGTAGATTTCT+AGG | + | chr1.4:25901851-25901870 | None:intergenic | 25.0% |
| ! | AGCAATAACAAACTTTGTAT+TGG | + | chr1.4:25899841-25899860 | None:intergenic | 25.0% |
| ! | AGGCTAAAATTCAATTATAG+AGG | - | chr1.4:25901107-25901126 | MS.gene053332:intron | 25.0% |
| ! | AGTGCTAAAAACAAAAACTT+TGG | + | chr1.4:25899190-25899209 | None:intergenic | 25.0% |
| ! | ATCAGTTAAAGTATAAGAGA+AGG | + | chr1.4:25901990-25902009 | None:intergenic | 25.0% |
| ! | ATCTTTCTTAATTTCATAGG+TGG | - | chr1.4:25898854-25898873 | MS.gene053332:intron | 25.0% |
| ! | ATGACAACATTGATAAATGT+TGG | + | chr1.4:25901305-25901324 | None:intergenic | 25.0% |
| ! | CAATATTCCAAACTTCTTTA+AGG | + | chr1.4:25900801-25900820 | None:intergenic | 25.0% |
| ! | CATAGACTTAAGTCTATAAT+TGG | + | chr1.4:25901245-25901264 | None:intergenic | 25.0% |
| ! | CTCTTATACTTTAACTGATT+TGG | - | chr1.4:25901991-25902010 | MS.gene053332:intron | 25.0% |
| ! | CTTAACCATTTGATTCTTAA+AGG | + | chr1.4:25899491-25899510 | None:intergenic | 25.0% |
| ! | GGTAATAACTTAAGAAACAA+TGG | + | chr1.4:25901350-25901369 | None:intergenic | 25.0% |
| ! | TAAAACCTTGGATACAAATT+TGG | + | chr1.4:25898569-25898588 | None:intergenic | 25.0% |
| ! | TATCAAATGTTCTTTGTGTT+TGG | + | chr1.4:25898326-25898345 | None:intergenic | 25.0% |
| ! | TCAGTTAAAGTATAAGAGAA+GGG | + | chr1.4:25901989-25902008 | None:intergenic | 25.0% |
| ! | TGATTAATTTATGGTGTTTG+TGG | - | chr1.4:25900728-25900747 | MS.gene053332:intron | 25.0% |
| ! | TGTGATTCTTTGTAATATCA+AGG | + | chr1.4:25898617-25898636 | None:intergenic | 25.0% |
| ! | TGTTACCAACAAACATAAAT+TGG | - | chr1.4:25899032-25899051 | MS.gene053332:intron | 25.0% |
| ! | TTATATAAACAGAATGAACC+AGG | - | chr1.4:25901626-25901645 | MS.gene053332:CDS | 25.0% |
| !! | AAATTTCAAAAAGCATGAGT+CGG | + | chr1.4:25902256-25902275 | None:intergenic | 25.0% |
| !! | AGTGACAAAAAATGGAATTT+TGG | + | chr1.4:25898545-25898564 | None:intergenic | 25.0% |
| !! | AGTTACCTTTAAGAATCAAA+TGG | - | chr1.4:25899483-25899502 | MS.gene053332:CDS | 25.0% |
| !! | ATAATTGATGGCCAAATAAT+TGG | + | chr1.4:25901724-25901743 | None:intergenic | 25.0% |
| !! | CAAAAGCATAGAGTATATAA+TGG | + | chr1.4:25901475-25901494 | None:intergenic | 25.0% |
| !! | CTTCAAATTTAAAGTGTGTT+TGG | - | chr1.4:25901276-25901295 | MS.gene053332:intron | 25.0% |
| !! | CTTCTCAGTATATGTTTTAT+TGG | - | chr1.4:25901408-25901427 | MS.gene053332:intron | 25.0% |
| !! | GTGACAAAAAATGGAATTTT+GGG | + | chr1.4:25898544-25898563 | None:intergenic | 25.0% |
| !! | TCATTGTTTCTTATGAAACA+TGG | + | chr1.4:25899426-25899445 | None:intergenic | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | - | chr1.4:25900666-25900685 | MS.gene053332:intron | 25.0% |
| !! | TTGATTTGATAATTGCTTTC+AGG | - | chr1.4:25901576-25901595 | MS.gene053332:intron | 25.0% |
| !! | TTGTATGTGGATTAAAGAAA+AGG | - | chr1.4:25901492-25901511 | MS.gene053332:intron | 25.0% |
| !!! | AAACTTTGAAATGGATCAAA+AGG | - | chr1.4:25902067-25902086 | MS.gene053332:intron | 25.0% |
| !!! | AAAGTTGATTTTGACATCTT+TGG | + | chr1.4:25901203-25901222 | None:intergenic | 25.0% |
| !!! | AAGGTTTTAAATTGATGTTG+CGG | - | chr1.4:25898580-25898599 | MS.gene053332:intron | 25.0% |
| !!! | ACTCTTTTTCTTTTTTGTGA+TGG | + | chr1.4:25901939-25901958 | None:intergenic | 25.0% |
| !!! | GATATCTTTTTCATATTGAC+CGG | + | chr1.4:25902169-25902188 | None:intergenic | 25.0% |
| !!! | TTATACTTTAACTGATTTGG+AGG | - | chr1.4:25901994-25902013 | MS.gene053332:intron | 25.0% |
| AAAAACCAAACAAACCAACA+TGG | + | chr1.4:25898913-25898932 | None:intergenic | 30.0% | |
| AAAAGAAAAAGGAGGAAACA+AGG | - | chr1.4:25900193-25900212 | MS.gene053332:CDS | 30.0% | |
| AAACCATGTTTATCCATAAG+GGG | + | chr1.4:25899805-25899824 | None:intergenic | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | - | chr1.4:25900194-25900213 | MS.gene053332:CDS | 30.0% | |
| AAAGTGAACTGAATGTAAAG+TGG | - | chr1.4:25901056-25901075 | MS.gene053332:intron | 30.0% | |
| AGTCACAGCTTCATTAAAAT+TGG | - | chr1.4:25899667-25899686 | MS.gene053332:CDS | 30.0% | |
| ATCAAAGAGAATATGATGTG+TGG | - | chr1.4:25902412-25902431 | MS.gene053332:CDS | 30.0% | |
| ATCAACTTTGCTTCTTTCAA+TGG | - | chr1.4:25901214-25901233 | MS.gene053332:intron | 30.0% | |
| ATGGCTAAATAAGGAATCAA+AGG | + | chr1.4:25899716-25899735 | None:intergenic | 30.0% | |
| CAGTTAAAGTATAAGAGAAG+GGG | + | chr1.4:25901988-25902007 | None:intergenic | 30.0% | |
| CTTGACTATGACCAATTATT+TGG | - | chr1.4:25901710-25901729 | MS.gene053332:intron | 30.0% | |
| GAATGTAAAGTGGTTTAAAG+TGG | - | chr1.4:25901066-25901085 | MS.gene053332:intron | 30.0% | |
| GAGTCTATTATAACTGTTTC+TGG | - | chr1.4:25898163-25898182 | MS.gene053332:intron | 30.0% | |
| GATGAATAAGAATCTGATAG+TGG | - | chr1.4:25901756-25901775 | MS.gene053332:intron | 30.0% | |
| GCAATTGCATTTATTGCTAA+TGG | - | chr1.4:25899778-25899797 | MS.gene053332:intron | 30.0% | |
| GTCATCCAATTTATGTTTGT+TGG | + | chr1.4:25899040-25899059 | None:intergenic | 30.0% | |
| TGGCTAAATAAGGAATCAAA+GGG | + | chr1.4:25899715-25899734 | None:intergenic | 30.0% | |
| TTGAAATCATCCATTTCAGA+AGG | + | chr1.4:25898825-25898844 | None:intergenic | 30.0% | |
| TTGTTAGCTGTTACAACTAT+AGG | + | chr1.4:25899882-25899901 | None:intergenic | 30.0% | |
| ! | AAACTGACACAATTTTCCAA+TGG | + | chr1.4:25901608-25901627 | None:intergenic | 30.0% |
| ! | AAGGAATCAAAGGGTAATTT+TGG | + | chr1.4:25899706-25899725 | None:intergenic | 30.0% |
| ! | AATTTCAAAAAGCATGAGTC+GGG | + | chr1.4:25902255-25902274 | None:intergenic | 30.0% |
| ! | AATTTGGTAGGTAATGGTAA+TGG | - | chr1.4:25900844-25900863 | MS.gene053332:intron | 30.0% |
| ! | ATACTCTATGCTTTTGTATG+TGG | - | chr1.4:25901479-25901498 | MS.gene053332:intron | 30.0% |
| ! | ATTAGCATTTTCAGTCTCAT+TGG | - | chr1.4:25900613-25900632 | MS.gene053332:intron | 30.0% |
| ! | GCAACATCAATTTAAAACCT+TGG | + | chr1.4:25898581-25898600 | None:intergenic | 30.0% |
| ! | TAAAGTGGTTTAAAGTGGTT+TGG | - | chr1.4:25901071-25901090 | MS.gene053332:intron | 30.0% |
| ! | TACTGATTATTACTGTCTCT+GGG | + | chr1.4:25899064-25899083 | None:intergenic | 30.0% |
| ! | TCAAACTTCTCAAATGGTTT+TGG | - | chr1.4:25898210-25898229 | MS.gene053332:intron | 30.0% |
| ! | TTACTGATTATTACTGTCTC+TGG | + | chr1.4:25899065-25899084 | None:intergenic | 30.0% |
| ! | TTGTTGAGTTTGTTTGAAAG+AGG | + | chr1.4:25898094-25898113 | None:intergenic | 30.0% |
| ! | TTTTCAAACCAAAGTAACGA+CGG | + | chr1.4:25902356-25902375 | None:intergenic | 30.0% |
| !! | AATCAAAGGGTAATTTTGGT+TGG | + | chr1.4:25899702-25899721 | None:intergenic | 30.0% |
| !! | TTAGATCCTCTTTTTGTTTC+AGG | - | chr1.4:25901877-25901896 | MS.gene053332:intron | 30.0% |
| !! | TTCTGAAATGGATGATTTCA+AGG | - | chr1.4:25898824-25898843 | MS.gene053332:CDS | 30.0% |
| !!! | AGCTTTTTTTGTTTCCTTGA+TGG | + | chr1.4:25899735-25899754 | None:intergenic | 30.0% |
| AACCATTTGAGAAGTTTGAG+AGG | + | chr1.4:25898209-25898228 | None:intergenic | 35.0% | |
| AACGTGACAAGAATTCCATT+GGG | + | chr1.4:25898015-25898034 | None:intergenic | 35.0% | |
| AACTTTGCTTCTTTCAATGG+TGG | - | chr1.4:25901217-25901236 | MS.gene053332:intron | 35.0% | |
| AAGTATAGCAGCATTTGAAG+AGG | + | chr1.4:25898119-25898138 | None:intergenic | 35.0% | |
| AATTCCTGTGGAGAAGAATT+TGG | - | chr1.4:25900828-25900847 | MS.gene053332:intron | 35.0% | |
| ACCTTAACAAACAACCATGT+TGG | - | chr1.4:25898896-25898915 | MS.gene053332:intron | 35.0% | |
| ATAACGTTAAGTAAACGTCG+TGG | + | chr1.4:25898658-25898677 | None:intergenic | 35.0% | |
| CACTTCCAAATTTGTATCCA+AGG | - | chr1.4:25898561-25898580 | MS.gene053332:intron | 35.0% | |
| GAAAGAAGTGACTAAAGTGA+GGG | - | chr1.4:25901778-25901797 | MS.gene053332:intron | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | - | chr1.4:25900838-25900857 | MS.gene053332:intron | 35.0% | |
| GAGAGGAAGCAAAAGAAAAA+GGG | + | chr1.4:25898192-25898211 | None:intergenic | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | - | chr1.4:25900928-25900947 | MS.gene053332:intron | 35.0% | |
| GCATAACCTGAAACAAAAAG+AGG | + | chr1.4:25901886-25901905 | None:intergenic | 35.0% | |
| GTAACAGAGAAAGCTGAAAT+TGG | + | chr1.4:25899018-25899037 | None:intergenic | 35.0% | |
| TCTGTTAAAGATCCATTCAG+AGG | + | chr1.4:25898786-25898805 | None:intergenic | 35.0% | |
| TGAGAGGAAGCAAAAGAAAA+AGG | + | chr1.4:25898193-25898212 | None:intergenic | 35.0% | |
| TGCACCTGAAGAAAATTTCT+TGG | - | chr1.4:25900927-25900946 | MS.gene053332:intron | 35.0% | |
| TGTAATATCAAGGATCACGA+TGG | + | chr1.4:25898607-25898626 | None:intergenic | 35.0% | |
| TTATCTCTATTGCTGCTGAA+AGG | - | chr1.4:25902454-25902473 | MS.gene053332:CDS | 35.0% | |
| TTCCTCTCAAACTTCTCAAA+TGG | - | chr1.4:25898204-25898223 | MS.gene053332:intron | 35.0% | |
| TTTCAGTCTCATTGGAATGT+TGG | - | chr1.4:25900621-25900640 | MS.gene053332:intron | 35.0% | |
| TTTGGGAGACAAAAGAAAGT+GGG | + | chr1.4:25898527-25898546 | None:intergenic | 35.0% | |
| ! | ACCAACATGGTTGTTTGTTA+AGG | + | chr1.4:25898900-25898919 | None:intergenic | 35.0% |
| ! | AGAACGATGTGATGATGTTA+AGG | - | chr1.4:25901806-25901825 | MS.gene053332:intron | 35.0% |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | + | chr1.4:25900934-25900953 | None:intergenic | 35.0% |
| ! | ATTGCTTTGTTCAGAATCTC+AGG | - | chr1.4:25899855-25899874 | MS.gene053332:intron | 35.0% |
| ! | CACTCGGTATGTAGTTTTTA+AGG | - | chr1.4:25898247-25898266 | MS.gene053332:intron | 35.0% |
| ! | GAACGATGTGATGATGTTAA+GGG | - | chr1.4:25901807-25901826 | MS.gene053332:intron | 35.0% |
| ! | GATTCCTTATTTAGCCATCA+AGG | - | chr1.4:25899718-25899737 | MS.gene053332:intron | 35.0% |
| ! | GCTATACTTGAAGATTTTGC+TGG | - | chr1.4:25898130-25898149 | MS.gene053332:CDS | 35.0% |
| ! | GTTTCCTTGATGGCTAAATA+AGG | + | chr1.4:25899725-25899744 | None:intergenic | 35.0% |
| ! | TGAGTTTGTTTGAAAGAGGA+GGG | + | chr1.4:25898090-25898109 | None:intergenic | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | + | chr1.4:25900068-25900087 | None:intergenic | 35.0% |
| ! | TTGAGTTTGTTTGAAAGAGG+AGG | + | chr1.4:25898091-25898110 | None:intergenic | 35.0% |
| ! | TTTTTCGCAGATGTTGTGAT+TGG | - | chr1.4:25902273-25902292 | MS.gene053332:CDS | 35.0% |
| !! | AACAACCATGTTGGTTTGTT+TGG | - | chr1.4:25898905-25898924 | MS.gene053332:intron | 35.0% |
| !! | ACTTTAACTGATTTGGAGGT+GGG | - | chr1.4:25901998-25902017 | MS.gene053332:intron | 35.0% |
| !! | GTAGGTAATGGTAATGGTAA+TGG | - | chr1.4:25900850-25900869 | MS.gene053332:intron | 35.0% |
| !! | TACTTTAACTGATTTGGAGG+TGG | - | chr1.4:25901997-25902016 | MS.gene053332:intron | 35.0% |
| !! | TTGATCTGAGACAAGTGTTT+TGG | - | chr1.4:25898702-25898721 | MS.gene053332:intron | 35.0% |
| !! | TTTTGGGAGACAAAAGAAAG+TGG | + | chr1.4:25898528-25898547 | None:intergenic | 35.0% |
| ATGAAGAGTAGACATGTTGC+TGG | - | chr1.4:25901911-25901930 | MS.gene053332:intron | 40.0% | |
| ATTTCAGAAGGTGAAACTGG+TGG | + | chr1.4:25898813-25898832 | None:intergenic | 40.0% | |
| CTTCACACTCATCCTTTGAT+CGG | - | chr1.4:25902113-25902132 | MS.gene053332:intron | 40.0% | |
| GAACGTGACAAGAATTCCAT+TGG | + | chr1.4:25898016-25898035 | None:intergenic | 40.0% | |
| GAATATGATGTGTGGACTCA+AGG | - | chr1.4:25902420-25902439 | MS.gene053332:CDS | 40.0% | |
| GAGGAAGGAAAAGAAAAAGG+AGG | - | chr1.4:25900185-25900204 | MS.gene053332:CDS | 40.0% | |
| GATAGTCTTCCTGATGTTCT+TGG | + | chr1.4:25898750-25898769 | None:intergenic | 40.0% | |
| GCTGAAATTGGTACTACTAG+TGG | + | chr1.4:25899006-25899025 | None:intergenic | 40.0% | |
| GGAAAGAAGTGACTAAAGTG+AGG | - | chr1.4:25901777-25901796 | MS.gene053332:intron | 40.0% | |
| GGAGAGGAAGGAAAAGAAAA+AGG | - | chr1.4:25900182-25900201 | MS.gene053332:CDS | 40.0% | |
| GGTTTGAAAACAATAACGCG+TGG | - | chr1.4:25902366-25902385 | MS.gene053332:CDS | 40.0% | |
| TAACAGTACACTGTACAGTG+AGG | + | chr1.4:25898979-25898998 | None:intergenic | 40.0% | |
| TATTGCTGCTGTAATTCCTG+TGG | - | chr1.4:25900816-25900835 | MS.gene053332:intron | 40.0% | |
| TCCATTTCAGAAGGTGAAAC+TGG | + | chr1.4:25898816-25898835 | None:intergenic | 40.0% | |
| TGAAGAGTAGACATGTTGCT+GGG | - | chr1.4:25901912-25901931 | MS.gene053332:intron | 40.0% | |
| TGGAATTCTTGTCACGTTCA+TGG | - | chr1.4:25898017-25898036 | MS.gene053332:CDS | 40.0% | |
| TGGCGTTATCAAAGAAATGC+CGG | - | chr1.4:25902293-25902312 | MS.gene053332:CDS | 40.0% | |
| TGGCTGTTTGCATTGAAGAA+AGG | + | chr1.4:25899103-25899122 | None:intergenic | 40.0% | |
| TTACGTCTGAGTGTCATGTT+CGG | - | chr1.4:25901375-25901394 | MS.gene053332:intron | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | - | chr1.4:25900752-25900771 | MS.gene053332:intron | 40.0% | |
| TTTAAGAAGCTCACAACCTC+TGG | + | chr1.4:25900977-25900996 | None:intergenic | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | - | chr1.4:25900751-25900770 | MS.gene053332:intron | 40.0% | |
| ! | ACCAGTTTCACCTTCTGAAA+TGG | - | chr1.4:25898812-25898831 | MS.gene053332:CDS | 40.0% |
| ! | TATTGCTAATGGACCCCTTA+TGG | - | chr1.4:25899789-25899808 | MS.gene053332:intron | 40.0% |
| ! | TTATCAAAGAAATGCCGGCT+TGG | - | chr1.4:25902298-25902317 | MS.gene053332:CDS | 40.0% |
| !! | AATGGTAATGGTAATGGTGG+TGG | - | chr1.4:25900856-25900875 | MS.gene053332:intron | 40.0% |
| !! | AGGTGGGTCTTGTTTCATTT+GGG | - | chr1.4:25902014-25902033 | MS.gene053332:intron | 40.0% |
| !! | ATGGTAATGGTAATGGTGGT+GGG | - | chr1.4:25900857-25900876 | MS.gene053332:intron | 40.0% |
| !! | GGTAATGGTAATGGTAATGG+TGG | - | chr1.4:25900853-25900872 | MS.gene053332:intron | 40.0% |
| AAGAATTCCATTGGGTCACG+AGG | + | chr1.4:25898007-25898026 | None:intergenic | 45.0% | |
| AGCTCCAATAGTAGCTTCAG+TGG | - | chr1.4:25900898-25900917 | MS.gene053332:intron | 45.0% | |
| AGTAGAGAATTGCTTGCCAG+AGG | - | chr1.4:25900958-25900977 | MS.gene053332:intron | 45.0% | |
| ATCGGCGTTTGATCCATCAA+GGG | - | chr1.4:25902131-25902150 | MS.gene053332:intron | 45.0% | |
| ATGGATCAAACGCCGATCAA+AGG | + | chr1.4:25902128-25902147 | None:intergenic | 45.0% | |
| CAAGGGCCCTTAAAGAAGTT+TGG | - | chr1.4:25900791-25900810 | MS.gene053332:intron | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | + | chr1.4:25900835-25900854 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | - | chr1.4:25900832-25900851 | MS.gene053332:intron | 45.0% | |
| CGATCAAAGGATGAGTGTGA+AGG | + | chr1.4:25902115-25902134 | None:intergenic | 45.0% | |
| CGGGGATATTACAACGTTGA+CGG | - | chr1.4:25900464-25900483 | MS.gene053332:intron | 45.0% | |
| CGTCAACGTTGTAATATCCC+CGG | + | chr1.4:25900466-25900485 | None:intergenic | 45.0% | |
| GGACCCCTTATGGATAAACA+TGG | - | chr1.4:25899799-25899818 | MS.gene053332:intron | 45.0% | |
| GGATCGTATCATGTCTCACT+CGG | - | chr1.4:25898231-25898250 | MS.gene053332:intron | 45.0% | |
| GGTTTGGATCGCTAAACACA+AGG | - | chr1.4:25901087-25901106 | MS.gene053332:intron | 45.0% | |
| TCAAAGGATGAGTGTGAAGG+TGG | + | chr1.4:25902112-25902131 | None:intergenic | 45.0% | |
| TCCATCAAGGGTTCGATCAT+TGG | - | chr1.4:25902143-25902162 | MS.gene053332:intron | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | - | chr1.4:25900753-25900772 | MS.gene053332:intron | 45.0% | |
| TGACACTCAGACGTAAACAC+CGG | + | chr1.4:25901371-25901390 | None:intergenic | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | + | chr1.4:25900905-25900924 | None:intergenic | 45.0% | |
| TTGAGCTGGAGACAAAGCTT+TGG | + | chr1.4:25898065-25898084 | None:intergenic | 45.0% | |
| TTTGATATGCTGAACCGACC+AGG | + | chr1.4:25898365-25898384 | None:intergenic | 45.0% | |
| ! | GAGGTATCTCCAAGAACATC+AGG | - | chr1.4:25898738-25898757 | MS.gene053332:intron | 45.0% |
| ! | TGCTTTCAGGTGAACTCCAT+TGG | - | chr1.4:25901589-25901608 | MS.gene053332:intron | 45.0% |
| ! | TGTGGACTCAAGGTGTTTCA+AGG | - | chr1.4:25902430-25902449 | MS.gene053332:CDS | 45.0% |
| ! | TTTTGGTATTGTGCAGCAGG+AGG | - | chr1.4:25898719-25898738 | MS.gene053332:intron | 45.0% |
| !! | ACATTGACTCGTGTGAGACA+TGG | + | chr1.4:25899313-25899332 | None:intergenic | 45.0% |
| !! | CAAAGCTTTGGAGACTTCCA+TGG | + | chr1.4:25898053-25898072 | None:intergenic | 45.0% |
| !! | GAGGTGGGTCTTGTTTCATT+TGG | - | chr1.4:25902013-25902032 | MS.gene053332:intron | 45.0% |
| !! | GGTGGGTCTTGTTTCATTTG+GGG | - | chr1.4:25902015-25902034 | MS.gene053332:intron | 45.0% |
| !! | TGGTAATGGTAATGGTGGTG+GGG | - | chr1.4:25900858-25900877 | MS.gene053332:intron | 45.0% |
| !!! | GTGTTTTGGTATTGTGCAGC+AGG | - | chr1.4:25898716-25898735 | MS.gene053332:intron | 45.0% |
| ACGTCGACGTTTCAGTGTTC+AGG | - | chr1.4:25899393-25899412 | MS.gene053332:intron | 50.0% | |
| AGAAACACCTCGTGACCCAA+TGG | - | chr1.4:25897997-25898016 | MS.gene053332:CDS | 50.0% | |
| CATTACAGAGTCTCTGCCAC+CGG | - | chr1.4:25900117-25900136 | MS.gene053332:CDS | 50.0% | |
| CTTCTTAAACGCACTCGCAC+AGG | - | chr1.4:25900988-25901007 | MS.gene053332:intron | 50.0% | |
| GATCGGCGTTTGATCCATCA+AGG | - | chr1.4:25902130-25902149 | MS.gene053332:intron | 50.0% | |
| GCCAATGATCGAACCCTTGA+TGG | + | chr1.4:25902147-25902166 | None:intergenic | 50.0% | |
| GGAAGACTATCACACAGCAG+TGG | - | chr1.4:25898759-25898778 | MS.gene053332:intron | 50.0% | |
| GGCTGCAACATTGAAGGCAA+GGG | - | chr1.4:25900774-25900793 | MS.gene053332:intron | 50.0% | |
| GGTGACAACCGTCGTTACTT+TGG | - | chr1.4:25902345-25902364 | MS.gene053332:CDS | 50.0% | |
| GTGTTTGTGAGTTTCGTCGC+AGG | + | chr1.4:25898304-25898323 | None:intergenic | 50.0% | |
| TCAAGGGTTCGATCATTGGC+CGG | - | chr1.4:25902147-25902166 | MS.gene053332:intron | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | - | chr1.4:25900377-25900396 | MS.gene053332:CDS | 50.0% | |
| TCAGCTCCATGCTGCAGTTT+CGG | - | chr1.4:25900227-25900246 | MS.gene053332:CDS | 50.0% | |
| TGAGCGTGATCACCTTGCTT+CGG | - | chr1.4:25900410-25900429 | MS.gene053332:intron | 50.0% | |
| TGCTCGTAAAGACGAGCAGA+TGG | - | chr1.4:25900308-25900327 | MS.gene053332:CDS | 50.0% | |
| TTCATGGTCTGCTTCTGCCA+TGG | - | chr1.4:25898033-25898052 | MS.gene053332:CDS | 50.0% | |
| ! | AGCATGGAGCTGAGCATTGT+GGG | + | chr1.4:25900220-25900239 | None:intergenic | 50.0% |
| ! | ATTGGGTCACGAGGTGTTTC+TGG | + | chr1.4:25897998-25898017 | None:intergenic | 50.0% |
| ! | TATGCTGAACTGACTCAGCC+TGG | - | chr1.4:25898344-25898363 | MS.gene053332:intron | 50.0% |
| ! | TTGGGTCACGAGGTGTTTCT+GGG | + | chr1.4:25897997-25898016 | None:intergenic | 50.0% |
| !! | GGTAATGGTAATGGTGGTGG+GGG | - | chr1.4:25900859-25900878 | MS.gene053332:intron | 50.0% |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | - | chr1.4:25900436-25900455 | MS.gene053332:intron | 50.0% |
| ACATTGAGCCGCCACCAATG+TGG | + | chr1.4:25900364-25900383 | None:intergenic | 55.0% | |
| ACCTGACGAAGCAGCAGTTG+CGG | + | chr1.4:25900289-25900308 | None:intergenic | 55.0% | |
| CACAGCAGTGGACCTCTGAA+TGG | - | chr1.4:25898771-25898790 | MS.gene053332:intron | 55.0% | |
| CAGAGCTAACGACCGAAGCA+AGG | + | chr1.4:25900425-25900444 | None:intergenic | 55.0% | |
| CAGCAACCGAAACTGCAGCA+TGG | + | chr1.4:25900236-25900255 | None:intergenic | 55.0% | |
| CATGCTGCAGTTTCGGTTGC+TGG | - | chr1.4:25900234-25900253 | MS.gene053332:CDS | 55.0% | |
| CCTTCTAGCAAGTGACGTCC+AGG | + | chr1.4:25902324-25902343 | None:intergenic | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | + | chr1.4:25900119-25900138 | None:intergenic | 55.0% | |
| GAAAGAGGAGGGAGTTGAGC+TGG | + | chr1.4:25898079-25898098 | None:intergenic | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | - | chr1.4:25900326-25900345 | MS.gene053332:CDS | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | - | chr1.4:25900323-25900342 | MS.gene053332:CDS | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | - | chr1.4:25900773-25900792 | MS.gene053332:intron | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | - | chr1.4:25900384-25900403 | MS.gene053332:intron | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | - | chr1.4:25900383-25900402 | MS.gene053332:intron | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | - | chr1.4:25900385-25900404 | MS.gene053332:intron | 55.0% | |
| ! | CAGCATGGAGCTGAGCATTG+TGG | + | chr1.4:25900221-25900240 | None:intergenic | 55.0% |
| ! | CCTGGACGTCACTTGCTAGA+AGG | - | chr1.4:25902321-25902340 | MS.gene053332:CDS | 55.0% |
| ! | CTGAACTGACTCAGCCTGGT+CGG | - | chr1.4:25898348-25898367 | MS.gene053332:intron | 55.0% |
| ! | GGACGTCACTTGCTAGAAGG+TGG | - | chr1.4:25902324-25902343 | MS.gene053332:CDS | 55.0% |
| !! | AAAGAAATGCCGGCTTGGCC+TGG | - | chr1.4:25902303-25902322 | MS.gene053332:CDS | 55.0% |
| !! | GTCACGAGGTGTTTCTGGGT+CGG | + | chr1.4:25897993-25898012 | None:intergenic | 55.0% |
| !! | TCACGAGGTGTTTCTGGGTC+GGG | + | chr1.4:25897992-25898011 | None:intergenic | 55.0% |
| AAGTGACGTCCAGGCCAAGC+CGG | + | chr1.4:25902315-25902334 | None:intergenic | 60.0% | |
| CCCGGCAGACCTCACATTCA+CGG | + | chr1.4:25900448-25900467 | None:intergenic | 60.0% | |
| CCGTGAATGTGAGGTCTGCC+GGG | - | chr1.4:25900445-25900464 | MS.gene053332:intron | 60.0% | |
| CGTGAATGTGAGGTCTGCCG+GGG | - | chr1.4:25900446-25900465 | MS.gene053332:intron | 60.0% | |
| CTGCTGCTGCGACAGGTATG+CGG | - | chr1.4:25900487-25900506 | MS.gene053332:intron | 60.0% | |
| GACAGACATGGCGGTAGCGT+CGG | - | chr1.4:25900335-25900354 | MS.gene053332:CDS | 60.0% | |
| GAGGTGGCTGAAGGAGAGGA+AGG | - | chr1.4:25900170-25900189 | MS.gene053332:CDS | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | - | chr1.4:25900444-25900463 | MS.gene053332:intron | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | - | chr1.4:25900768-25900787 | MS.gene053332:intron | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | + | chr1.4:25900268-25900287 | None:intergenic | 60.0% | |
| GGTGGGGGCAGTGGTAGTAA+TGG | - | chr1.4:25900874-25900893 | MS.gene053332:intron | 60.0% | |
| TACAGAGTCTCTGCCACCGG+CGG | - | chr1.4:25900120-25900139 | MS.gene053332:CDS | 60.0% | |
| TGAGGCTGCTGAGGCTATGG+GGG | - | chr1.4:25900386-25900405 | MS.gene053332:intron | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | - | chr1.4:25900254-25900273 | MS.gene053332:CDS | 60.0% | |
| ! | GGTGGCGGCTCAATGTGTTG+AGG | - | chr1.4:25900368-25900387 | MS.gene053332:CDS | 60.0% |
| GTCGGCTGCCACATTGGTGG+CGG | - | chr1.4:25900353-25900372 | MS.gene053332:CDS | 65.0% | |
| TGGGGAGGTGGCTGAAGGAG+AGG | - | chr1.4:25900166-25900185 | MS.gene053332:CDS | 65.0% | |
| TTGACGGCTGCTGCTGCGAC+AGG | - | chr1.4:25900480-25900499 | MS.gene053332:intron | 65.0% | |
| ! | GCCGCAACTGCTGCTTCGTC+AGG | - | chr1.4:25900285-25900304 | MS.gene053332:CDS | 65.0% |
| !! | AGCGTCGGCTGCCACATTGG+TGG | - | chr1.4:25900350-25900369 | MS.gene053332:CDS | 65.0% |
| !! | GGTAATGGTGGTGGGGGCAG+TGG | - | chr1.4:25900865-25900884 | MS.gene053332:intron | 65.0% |
| !! | GGTAGCGTCGGCTGCCACAT+TGG | - | chr1.4:25900347-25900366 | MS.gene053332:CDS | 65.0% |
| AGAGTCTCTGCCACCGGCGG+TGG | - | chr1.4:25900123-25900142 | MS.gene053332:CDS | 70.0% | |
| GACGGTGGGGAGGTGGCTGA+AGG | - | chr1.4:25900161-25900180 | MS.gene053332:CDS | 70.0% | |
| GAGGCGGAGGGAAGACGGTG+GGG | - | chr1.4:25900148-25900167 | MS.gene053332:CDS | 70.0% | |
| GAGGGAAGACGGTGGGGAGG+TGG | - | chr1.4:25900154-25900173 | MS.gene053332:CDS | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | - | chr1.4:25900147-25900166 | MS.gene053332:CDS | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | - | chr1.4:25900143-25900162 | MS.gene053332:CDS | 70.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | - | chr1.4:25900146-25900165 | MS.gene053332:CDS | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | - | chr1.4:25900151-25900170 | MS.gene053332:CDS | 75.0% | |
| GTCTCTGCCACCGGCGGTGG+CGG | - | chr1.4:25900126-25900145 | MS.gene053332:CDS | 75.0% | |
| !! | TCTGCCACCGGCGGTGGCGG+AGG | - | chr1.4:25900129-25900148 | MS.gene053332:CDS | 80.0% |
| ! | CCCTCCGCCTCCGCCACCGC+CGG | + | chr1.4:25900139-25900158 | None:intergenic | 85.0% |
| ! | TCCGCCTCCGCCACCGCCGG+TGG | + | chr1.4:25900136-25900155 | None:intergenic | 85.0% |
| !!! | ACCGGCGGTGGCGGAGGCGG+AGG | - | chr1.4:25900135-25900154 | MS.gene053332:CDS | 85.0% |
| !!! | CCGGCGGTGGCGGAGGCGGA+GGG | - | chr1.4:25900136-25900155 | MS.gene053332:CDS | 85.0% |
| !!! | GCCACCGGCGGTGGCGGAGG+CGG | - | chr1.4:25900132-25900151 | MS.gene053332:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 25897959 | 25902500 | 25897959 | ID=MS.gene053332 |
| chr1.4 | mRNA | 25897959 | 25902500 | 25897959 | ID=MS.gene053332.t1;Parent=MS.gene053332 |
| chr1.4 | exon | 25902207 | 25902500 | 25902207 | ID=MS.gene053332.t1.exon1;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25902207 | 25902500 | 25902207 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25901614 | 25901724 | 25901614 | ID=MS.gene053332.t1.exon2;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25901614 | 25901724 | 25901614 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25899958 | 25900399 | 25899958 | ID=MS.gene053332.t1.exon3;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25899958 | 25900399 | 25899958 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25899450 | 25899695 | 25899450 | ID=MS.gene053332.t1.exon4;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25899450 | 25899695 | 25899450 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25898812 | 25898861 | 25898812 | ID=MS.gene053332.t1.exon5;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25898812 | 25898861 | 25898812 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25898503 | 25898560 | 25898503 | ID=MS.gene053332.t1.exon6;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25898503 | 25898560 | 25898503 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| chr1.4 | exon | 25897959 | 25898176 | 25897959 | ID=MS.gene053332.t1.exon7;Parent=MS.gene053332.t1 |
| chr1.4 | CDS | 25897959 | 25898176 | 25897959 | ID=cds.MS.gene053332.t1;Parent=MS.gene053332.t1 |
| Gene Sequence |
| Protein sequence |
