Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56219.t1 | XP_013459201.1 | 72.8 | 261 | 25 | 3 | 1 | 236 | 1 | 240 | 7.90E-93 | 350.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56219.t1 | Q8VZU9 | 54.2 | 201 | 70 | 1 | 1 | 179 | 1 | 201 | 3.2e-58 | 226.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56219.t1 | A0A072V3Y3 | 72.8 | 261 | 25 | 3 | 1 | 236 | 1 | 240 | 5.7e-93 | 350.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058378 | MS.gene56219 | 0.931255 | 4.95E-94 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56219.t1 | MTR_3g408340 | 74.910 | 279 | 26 | 5 | 1 | 235 | 1 | 279 | 7.00e-140 | 393 |
| MS.gene56219.t1 | MTR_8g102300 | 50.965 | 259 | 90 | 3 | 1 | 236 | 1 | 245 | 8.08e-88 | 260 |
| MS.gene56219.t1 | MTR_8g102300 | 58.911 | 202 | 61 | 1 | 1 | 180 | 1 | 202 | 2.36e-83 | 247 |
| MS.gene56219.t1 | MTR_8g102300 | 58.911 | 202 | 61 | 1 | 1 | 180 | 1 | 202 | 4.12e-83 | 248 |
| MS.gene56219.t1 | MTR_2g022890 | 30.252 | 238 | 130 | 4 | 6 | 207 | 7 | 244 | 1.58e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56219.t1 | AT4G29330 | 46.415 | 265 | 112 | 3 | 1 | 235 | 1 | 265 | 4.39e-76 | 231 |
| MS.gene56219.t1 | AT4G29330 | 54.229 | 201 | 70 | 1 | 1 | 179 | 1 | 201 | 1.29e-74 | 225 |
| MS.gene56219.t1 | AT4G04860 | 29.864 | 221 | 124 | 3 | 6 | 195 | 7 | 227 | 7.29e-26 | 101 |
| MS.gene56219.t1 | AT4G21810 | 29.864 | 221 | 124 | 3 | 6 | 195 | 7 | 227 | 3.10e-25 | 99.8 |
Find 46 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAAGAATCAACATTTA+TGG | 0.126417 | 3.3:-4113829 | MS.gene56219:CDS |
| ATCACAAATTTCTTCTTTCT+TGG | 0.159647 | 3.3:-4114628 | MS.gene56219:CDS |
| GGAAGAGCTTATCGTTTAAA+TGG | 0.247498 | 3.3:-4111970 | MS.gene56219:CDS |
| ATTTGGTGCACTCTCACTTT+TGG | 0.274790 | 3.3:-4114215 | MS.gene56219:intron |
| TGGCTGCTGTGCCATATTTA+TGG | 0.282477 | 3.3:-4113915 | MS.gene56219:CDS |
| TTTAATGTTTCAGATACTTC+TGG | 0.287318 | 3.3:-4114959 | MS.gene56219:intron |
| CTTAGTGTTTAAACGACTTC+AGG | 0.309739 | 3.3:-4114832 | MS.gene56219:intron |
| CCTCCAGTGAGCAAGACTTT+TGG | 0.313821 | 3.3:-4114930 | MS.gene56219:CDS |
| TTTGTTTGGATGTTGATATT+TGG | 0.328018 | 3.3:-4114232 | MS.gene56219:CDS |
| TAAATGTTGATTCTTGCATT+TGG | 0.332736 | 3.3:+4113832 | None:intergenic |
| ATCCTTTAAAGCCAGACATT+AGG | 0.341707 | 3.3:-4112790 | MS.gene56219:intron |
| ACAGTGCTTCATCCTCTTGC+TGG | 0.343953 | 3.3:-4112736 | MS.gene56219:CDS |
| TCCTTTAAAGCCAGACATTA+GGG | 0.347312 | 3.3:-4112789 | MS.gene56219:intron |
| AGCAAAATATGGTGTTTCAT+TGG | 0.351511 | 3.3:-4114287 | MS.gene56219:CDS |
| TTCCCCTCAGCAGCAAAATC+AGG | 0.357984 | 3.3:-4112013 | MS.gene56219:CDS |
| ATGAATGGAGACCATAAATA+TGG | 0.359019 | 3.3:+4113904 | None:intergenic |
| AAGAATCAACATTTATGGTT+TGG | 0.373235 | 3.3:-4113824 | MS.gene56219:CDS |
| ATATTTATGGTCTCCATTCA+TGG | 0.388255 | 3.3:-4113902 | MS.gene56219:CDS |
| ACTGCAAATGGAAATGAAAA+TGG | 0.398146 | 3.3:+4114604 | None:intergenic |
| TTATGGTTTGGTATCATTGA+AGG | 0.428421 | 3.3:-4113812 | MS.gene56219:intron |
| GAATTGTACAGAGCAAAATA+TGG | 0.430905 | 3.3:-4114298 | MS.gene56219:intron |
| TCTGCAGTTCTCTTGTCAAA+TGG | 0.435050 | 3.3:+4114256 | None:intergenic |
| ACTAAAGAAATTCCCATGAA+TGG | 0.439121 | 3.3:+4113889 | None:intergenic |
| TATATCTATTGCAGGTTTGG+AGG | 0.439394 | 3.3:-4114654 | MS.gene56219:intron |
| ATTATCAGACGAACTGCAAA+TGG | 0.441501 | 3.3:+4114592 | None:intergenic |
| CAGACATTAGGGATGGTTGC+AGG | 0.471940 | 3.3:-4112778 | MS.gene56219:CDS |
| ACTCCAAAAGTCTTGCTCAC+TGG | 0.489230 | 3.3:+4114927 | None:intergenic |
| TTAGAAAGAGATTACTCTGC+TGG | 0.504932 | 3.3:+4115566 | None:intergenic |
| TATTTATGGTCTCCATTCAT+GGG | 0.507960 | 3.3:-4113901 | MS.gene56219:CDS |
| TTCTTGCATTTGGAAATTCA+CGG | 0.511989 | 3.3:+4113842 | None:intergenic |
| GGAAGAAGCAACCGTCTTGG+TGG | 0.521063 | 3.3:-4112094 | MS.gene56219:CDS |
| TATGGTGTTTCATTGGAAAG+AGG | 0.521644 | 3.3:-4114280 | MS.gene56219:CDS |
| ACAAGAAACACTTCACTCAC+AGG | 0.548618 | 3.3:-4112055 | MS.gene56219:CDS |
| CAGCAGCAAAATCAGGGTGA+TGG | 0.548774 | 3.3:-4112006 | MS.gene56219:CDS |
| GTGCTTCATCCTCTTGCTGG+TGG | 0.558055 | 3.3:-4112733 | MS.gene56219:CDS |
| AAAGGAAGAAGCAACCGTCT+TGG | 0.560738 | 3.3:-4112097 | MS.gene56219:CDS |
| TCAGCTGGAATTATATTCAA+AGG | 0.564072 | 3.3:-4112115 | MS.gene56219:intron |
| TTGAACTTTCCACCAGCAAG+AGG | 0.576756 | 3.3:+4112724 | None:intergenic |
| TCCCCTCAGCAGCAAAATCA+GGG | 0.580967 | 3.3:-4112012 | MS.gene56219:CDS |
| AGAAAAGGATACACTAAGAG+AGG | 0.581080 | 3.3:+4112691 | None:intergenic |
| TTGTTTGATTTCCACCAAGA+CGG | 0.581460 | 3.3:+4112083 | None:intergenic |
| TTAAAGCCAGACATTAGGGA+TGG | 0.602509 | 3.3:-4112785 | MS.gene56219:intron |
| CCAAAAGTCTTGCTCACTGG+AGG | 0.629915 | 3.3:+4114930 | None:intergenic |
| TCACAGGAAACAAGTGGCAA+TGG | 0.632870 | 3.3:-4112039 | MS.gene56219:CDS |
| ATTCATATAATATGCAGCTG+TGG | 0.634214 | 3.3:+4114890 | None:intergenic |
| CTTCACTCACAGGAAACAAG+TGG | 0.654839 | 3.3:-4112045 | MS.gene56219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATTTATTAATTTT+CGG | + | chr3.3:4112784-4112803 | None:intergenic | 0.0% |
| !!! | ATATTTATTTTCTTTTGTAA+TGG | - | chr3.3:4113210-4113229 | MS.gene56219:intron | 10.0% |
| !!! | TTTTTAAATTTCAATGTTTA+AGG | + | chr3.3:4112755-4112774 | None:intergenic | 10.0% |
| !! | AAATAAAAGGAACAAAAAAA+GGG | + | chr3.3:4113580-4113599 | None:intergenic | 15.0% |
| !! | AAATCATATTCATTTATGAT+TGG | + | chr3.3:4114653-4114672 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr3.3:4113970-4113989 | MS.gene56219:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3.3:4113971-4113990 | None:intergenic | 15.0% |
| !! | ATGCATATATGAAATATAAA+TGG | - | chr3.3:4112073-4112092 | MS.gene56219:CDS | 15.0% |
| !! | GATTGTTTATAACATTTATA+TGG | - | chr3.3:4112033-4112052 | MS.gene56219:CDS | 15.0% |
| !! | GCTAAAAAAAAACATAATAA+TGG | + | chr3.3:4114609-4114628 | None:intergenic | 15.0% |
| !! | TAAATAAAAGGAACAAAAAA+AGG | + | chr3.3:4113581-4113600 | None:intergenic | 15.0% |
| !! | TATTAATTTATTATCCATGA+TGG | - | chr3.3:4112398-4112417 | MS.gene56219:intron | 15.0% |
| !!! | AATATAATTTTGGTGAAATT+TGG | + | chr3.3:4112144-4112163 | None:intergenic | 15.0% |
| !!! | GCATAATCAAAATATAATTT+TGG | + | chr3.3:4112154-4112173 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3.3:4113994-4114013 | MS.gene56219:intron | 15.0% |
| !!! | TTAGCTTATATTTTTACAAT+AGG | - | chr3.3:4115239-4115258 | MS.gene56219:intron | 15.0% |
| !!! | TTTAACTTTTTTTTTTCAGT+TGG | - | chr3.3:4113527-4113546 | MS.gene56219:intron | 15.0% |
| !!! | TTTTTATTTATATCTATTGC+AGG | - | chr3.3:4112879-4112898 | MS.gene56219:intron | 15.0% |
| !! | AAAAAATATATGGTATAGCA+AGG | + | chr3.3:4112515-4112534 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3.3:4113980-4113999 | None:intergenic | 20.0% |
| !! | AAGCTGATATATAATAGAAA+AGG | + | chr3.3:4114868-4114887 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3.3:4113937-4113956 | MS.gene56219:intron | 20.0% |
| !! | AATTACTTATTAATCCTAAG+AGG | + | chr3.3:4113425-4113444 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3.3:4114057-4114076 | MS.gene56219:intron | 20.0% |
| !! | AGTTTAACTAATAATTGTTC+TGG | - | chr3.3:4115094-4115113 | MS.gene56219:intron | 20.0% |
| !! | ATCTAATTGAGATATTCAAA+TGG | + | chr3.3:4114491-4114510 | None:intergenic | 20.0% |
| !! | ATTAATAAGTAATTAGTGTC+CGG | - | chr3.3:4113431-4113450 | MS.gene56219:intron | 20.0% |
| !! | CATTTATATTCTCAAATTGT+TGG | + | chr3.3:4114197-4114216 | None:intergenic | 20.0% |
| !! | GCTTATCATATATCTTATAA+GGG | - | chr3.3:4112183-4112202 | MS.gene56219:intron | 20.0% |
| !! | GGATGAAACTAATAAATAAA+AGG | + | chr3.3:4113593-4113612 | None:intergenic | 20.0% |
| !! | TCTAATTGAGATATTCAAAT+GGG | + | chr3.3:4114490-4114509 | None:intergenic | 20.0% |
| !! | TGCTTATCATATATCTTATA+AGG | - | chr3.3:4112182-4112201 | MS.gene56219:intron | 20.0% |
| !! | TTTATGCATTTGAATTAATG+TGG | - | chr3.3:4114540-4114559 | MS.gene56219:intron | 20.0% |
| !!! | AATGTTTAAGGATAAGTTTT+TGG | + | chr3.3:4112743-4112762 | None:intergenic | 20.0% |
| !!! | ATATCATGAATACTTTTTGT+TGG | - | chr3.3:4114581-4114600 | MS.gene56219:intron | 20.0% |
| !!! | ATTAATACTTTTTGTTCTGT+AGG | - | chr3.3:4114680-4114699 | MS.gene56219:intron | 20.0% |
| !!! | ATTGTCATTTTGTAAATTTG+AGG | - | chr3.3:4113107-4113126 | MS.gene56219:intron | 20.0% |
| !!! | TGACATTTTGAAATGAAATA+TGG | + | chr3.3:4114952-4114971 | None:intergenic | 20.0% |
| !!! | TTAATACTTTTTGTTCTGTA+GGG | - | chr3.3:4114681-4114700 | MS.gene56219:intron | 20.0% |
| !!! | TTGAGAAAATAAAAGTGTAT+TGG | - | chr3.3:4114250-4114269 | MS.gene56219:CDS | 20.0% |
| !!! | TTGTCATTTTGTAAATTTGA+GGG | - | chr3.3:4113108-4113127 | MS.gene56219:intron | 20.0% |
| !!! | TTTATCAACTCTTCAATTTT+GGG | - | chr3.3:4114372-4114391 | MS.gene56219:intron | 20.0% |
| !!! | TTTTATCAACTCTTCAATTT+TGG | - | chr3.3:4114371-4114390 | MS.gene56219:intron | 20.0% |
| !!! | TTTTTTAATCCTCTGATTTT+CGG | - | chr3.3:4115047-4115066 | MS.gene56219:intron | 20.0% |
| ! | AAAAACACATGCTGAAAAAA+AGG | + | chr3.3:4112285-4112304 | None:intergenic | 25.0% |
| ! | AAGAATCAACATTTATGGTT+TGG | - | chr3.3:4113717-4113736 | MS.gene56219:intron | 25.0% |
| ! | AATGCAAGAATCAACATTTA+TGG | - | chr3.3:4113712-4113731 | MS.gene56219:intron | 25.0% |
| ! | ATCACAAATTTCTTCTTTCT+TGG | - | chr3.3:4112913-4112932 | MS.gene56219:intron | 25.0% |
| ! | ATGAATGAGCAGATAAAATT+AGG | - | chr3.3:4114163-4114182 | MS.gene56219:intron | 25.0% |
| ! | ATTATCAAAAGAAGAGTCAT+TGG | + | chr3.3:4113767-4113786 | None:intergenic | 25.0% |
| ! | ATTATGTGATCACAATTTCA+GGG | - | chr3.3:4113079-4113098 | MS.gene56219:intron | 25.0% |
| ! | ATTTATATCTATTGCAGGTT+TGG | - | chr3.3:4112884-4112903 | MS.gene56219:intron | 25.0% |
| ! | CATATATGCATTCAACTAAA+CGG | + | chr3.3:4112064-4112083 | None:intergenic | 25.0% |
| ! | GCAAATGTGACAATTATTAT+AGG | - | chr3.3:4114311-4114330 | MS.gene56219:intron | 25.0% |
| ! | GTTCAAAACTTACAATTTCA+AGG | - | chr3.3:4113138-4113157 | MS.gene56219:intron | 25.0% |
| ! | TATCTCGGGATAAAAAAATT+CGG | + | chr3.3:4112223-4112242 | None:intergenic | 25.0% |
| ! | TATTATATATCAGCTTGCAA+TGG | - | chr3.3:4114872-4114891 | MS.gene56219:CDS | 25.0% |
| ! | TTAATAAGTAATTAGTGTCC+GGG | - | chr3.3:4113432-4113451 | MS.gene56219:intron | 25.0% |
| ! | TTTAATGTTTCAGATACTTC+TGG | - | chr3.3:4112582-4112601 | MS.gene56219:intron | 25.0% |
| ! | TTTGTTTGGATGTTGATATT+TGG | - | chr3.3:4113309-4113328 | MS.gene56219:intron | 25.0% |
| !! | ATGATTGGTTAAAAGCATAA+TGG | + | chr3.3:4114638-4114657 | None:intergenic | 25.0% |
| !! | TTATCAACTCTTCAATTTTG+GGG | - | chr3.3:4114373-4114392 | MS.gene56219:intron | 25.0% |
| !! | TTTAATTTCAAGTAGTCTGA+TGG | - | chr3.3:4113388-4113407 | MS.gene56219:intron | 25.0% |
| !! | TTTTCAGTATTAGTATGCAA+TGG | + | chr3.3:4112812-4112831 | None:intergenic | 25.0% |
| !! | TTTTCATGATTGTCTATGTT+TGG | - | chr3.3:4113674-4113693 | MS.gene56219:intron | 25.0% |
| !! | TTTTTAATCCTCTGATTTTC+GGG | - | chr3.3:4115048-4115067 | MS.gene56219:intron | 25.0% |
| !!! | TAAATGTTGATTCTTGCATT+TGG | + | chr3.3:4113712-4113731 | None:intergenic | 25.0% |
| !!! | TGACTAGTTTACTTAAGTTA+AGG | + | chr3.3:4115345-4115364 | None:intergenic | 25.0% |
| AACTAATAATTGTTCTGGTC+AGG | - | chr3.3:4115099-4115118 | MS.gene56219:intron | 30.0% | |
| ACTAAAGAAATTCCCATGAA+TGG | + | chr3.3:4113655-4113674 | None:intergenic | 30.0% | |
| ACTAATAATTGTTCTGGTCA+GGG | - | chr3.3:4115100-4115119 | MS.gene56219:intron | 30.0% | |
| ACTGCAAATGGAAATGAAAA+TGG | + | chr3.3:4112940-4112959 | None:intergenic | 30.0% | |
| AGAAGCCAGACAAATAATTA+AGG | + | chr3.3:4113834-4113853 | None:intergenic | 30.0% | |
| AGCAAAATATGGTGTTTCAT+TGG | - | chr3.3:4113254-4113273 | MS.gene56219:intron | 30.0% | |
| ATATTGAGACATGCTTAGTA+TGG | - | chr3.3:4112428-4112447 | MS.gene56219:intron | 30.0% | |
| ATATTTATGGTCTCCATTCA+TGG | - | chr3.3:4113639-4113658 | MS.gene56219:intron | 30.0% | |
| ATCTCGGGATAAAAAAATTC+GGG | + | chr3.3:4112222-4112241 | None:intergenic | 30.0% | |
| ATGAATGGAGACCATAAATA+TGG | + | chr3.3:4113640-4113659 | None:intergenic | 30.0% | |
| ATTCATATAATATGCAGCTG+TGG | + | chr3.3:4112654-4112673 | None:intergenic | 30.0% | |
| CAAATAATTAAGGCTATGTG+AGG | + | chr3.3:4113824-4113843 | None:intergenic | 30.0% | |
| CAGTTAAGATTATTCCAACT+CGG | - | chr3.3:4114454-4114473 | MS.gene56219:intron | 30.0% | |
| CATTATGTGATCACAATTTC+AGG | - | chr3.3:4113078-4113097 | MS.gene56219:intron | 30.0% | |
| GAAATGAAATATGGTAAGTG+TGG | + | chr3.3:4114943-4114962 | None:intergenic | 30.0% | |
| GAATTGTACAGAGCAAAATA+TGG | - | chr3.3:4113243-4113262 | MS.gene56219:intron | 30.0% | |
| GACAATTATTATAGGACTCA+TGG | - | chr3.3:4114319-4114338 | MS.gene56219:intron | 30.0% | |
| GCATGATCAAGAAAACTAAA+CGG | + | chr3.3:4112855-4112874 | None:intergenic | 30.0% | |
| GCTCATTCTCAAAACAAAAA+AGG | + | chr3.3:4113794-4113813 | None:intergenic | 30.0% | |
| GTAAACTAGTCACAAAATAG+TGG | - | chr3.3:4115353-4115372 | MS.gene56219:intron | 30.0% | |
| TAACAAAGTCGTGAATATCT+CGG | + | chr3.3:4112238-4112257 | None:intergenic | 30.0% | |
| TATTTATGGTCTCCATTCAT+GGG | - | chr3.3:4113640-4113659 | MS.gene56219:intron | 30.0% | |
| TCACAAAATAGTGGCATATT+GGG | - | chr3.3:4115362-4115381 | MS.gene56219:intron | 30.0% | |
| TCAGCTGGAATTATATTCAA+AGG | - | chr3.3:4115426-4115445 | MS.gene56219:intron | 30.0% | |
| TGTGATCACATAATGTTACA+TGG | + | chr3.3:4113073-4113092 | None:intergenic | 30.0% | |
| TTCTTGCATTTGGAAATTCA+CGG | + | chr3.3:4113702-4113721 | None:intergenic | 30.0% | |
| TTGAATATAATTCCAGCTGA+TGG | + | chr3.3:4115426-4115445 | None:intergenic | 30.0% | |
| ! | ATTAGTTTCATCCTTCTCTT+AGG | - | chr3.3:4113600-4113619 | MS.gene56219:intron | 30.0% |
| ! | CATAGCCTTAATTATTTGTC+TGG | - | chr3.3:4113826-4113845 | MS.gene56219:CDS | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | - | chr3.3:4114019-4114038 | MS.gene56219:intron | 30.0% |
| ! | TATCAACTCTTCAATTTTGG+GGG | - | chr3.3:4114374-4114393 | MS.gene56219:intron | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | - | chr3.3:4114023-4114042 | MS.gene56219:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3.3:4113888-4113907 | None:intergenic | 30.0% |
| !! | CATGTGTTTTTCAACTAAAG+AGG | - | chr3.3:4112294-4112313 | MS.gene56219:intron | 30.0% |
| !! | TGCTTGAGTAACACTTTTTA+TGG | + | chr3.3:4115204-4115223 | None:intergenic | 30.0% |
| !! | TTATGGTTTGGTATCATTGA+AGG | - | chr3.3:4113729-4113748 | MS.gene56219:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3.3:4113889-4113908 | MS.gene56219:CDS | 30.0% |
| AAAGGAAAGAAGTGATAGCA+AGG | + | chr3.3:4112267-4112286 | None:intergenic | 35.0% | |
| AACAAAGTCGTGAATATCTC+GGG | + | chr3.3:4112237-4112256 | None:intergenic | 35.0% | |
| ACTTTGAGTGATACTCTTCA+TGG | + | chr3.3:4115006-4115025 | None:intergenic | 35.0% | |
| AGAAAAGGATACACTAAGAG+AGG | + | chr3.3:4114853-4114872 | None:intergenic | 35.0% | |
| ATTATCAGACGAACTGCAAA+TGG | + | chr3.3:4112952-4112971 | None:intergenic | 35.0% | |
| CAACTAAAGAGGATATCCAA+CGG | - | chr3.3:4112305-4112324 | MS.gene56219:intron | 35.0% | |
| CACAAAATAGTGGCATATTG+GGG | - | chr3.3:4115363-4115382 | MS.gene56219:intron | 35.0% | |
| CTTAGTGTTTAAACGACTTC+AGG | - | chr3.3:4112709-4112728 | MS.gene56219:CDS | 35.0% | |
| GCAACTTGATAGAATCATTG+TGG | + | chr3.3:4114903-4114922 | None:intergenic | 35.0% | |
| GGAAGAGCTTATCGTTTAAA+TGG | - | chr3.3:4115571-4115590 | MS.gene56219:intron | 35.0% | |
| GGACTAAAGAGAATGTAACA+TGG | + | chr3.3:4113052-4113071 | None:intergenic | 35.0% | |
| GTCACAAAATAGTGGCATAT+TGG | - | chr3.3:4115361-4115380 | MS.gene56219:intron | 35.0% | |
| TATATCTATTGCAGGTTTGG+AGG | - | chr3.3:4112887-4112906 | MS.gene56219:intron | 35.0% | |
| TATGGTGTTTCATTGGAAAG+AGG | - | chr3.3:4113261-4113280 | MS.gene56219:intron | 35.0% | |
| TCAATATCTCATAGCCATCA+TGG | + | chr3.3:4112415-4112434 | None:intergenic | 35.0% | |
| TGAGCTTAACTCAATTGGTA+TGG | + | chr3.3:4113494-4113513 | None:intergenic | 35.0% | |
| TGATCAAGAAAACTAAACGG+TGG | + | chr3.3:4112852-4112871 | None:intergenic | 35.0% | |
| TGGTTAAAAATTCGCCTCTT+AGG | - | chr3.3:4113408-4113427 | MS.gene56219:intron | 35.0% | |
| TTAGAAAGAGATTACTCTGC+TGG | + | chr3.3:4111978-4111997 | None:intergenic | 35.0% | |
| ! | AGAGAACTGCAGATTTTGTT+TGG | - | chr3.3:4113295-4113314 | MS.gene56219:intron | 35.0% |
| ! | ATTGCACTGGAGCATTTATT+TGG | + | chr3.3:4115398-4115417 | None:intergenic | 35.0% |
| ! | CTAGCACTGGATTTGATATT+CGG | - | chr3.3:4114726-4114745 | MS.gene56219:intron | 35.0% |
| ! | GTGTGTAGAGTATTAATTGG+AGG | - | chr3.3:4114022-4114041 | MS.gene56219:intron | 35.0% |
| ! | TTGCACTGGAGCATTTATTT+GGG | + | chr3.3:4115397-4115416 | None:intergenic | 35.0% |
| ! | TTGTTTGATTTCCACCAAGA+CGG | + | chr3.3:4115461-4115480 | None:intergenic | 35.0% |
| !! | ATCCTTTAAAGCCAGACATT+AGG | - | chr3.3:4114751-4114770 | MS.gene56219:intron | 35.0% |
| !! | TCCTTTAAAGCCAGACATTA+GGG | - | chr3.3:4114752-4114771 | MS.gene56219:intron | 35.0% |
| !!! | GACACTCATTTTGAAACTGA+GGG | - | chr3.3:4114127-4114146 | MS.gene56219:intron | 35.0% |
| AAAGCAATTCGGGACACTTT+CGG | - | chr3.3:4112331-4112350 | MS.gene56219:intron | 40.0% | |
| ACAAGAAACACTTCACTCAC+AGG | - | chr3.3:4115486-4115505 | MS.gene56219:intron | 40.0% | |
| ACCAATTGAGTTAAGCTCAC+AGG | - | chr3.3:4113495-4113514 | MS.gene56219:intron | 40.0% | |
| CATAACATATACATGAGCCG+AGG | + | chr3.3:4113465-4113484 | None:intergenic | 40.0% | |
| CCAATTGAGTTAAGCTCACA+GGG | - | chr3.3:4113496-4113515 | MS.gene56219:intron | 40.0% | |
| TCTGCAGTTCTCTTGTCAAA+TGG | + | chr3.3:4113288-4113307 | None:intergenic | 40.0% | |
| TTAAAGCCAGACATTAGGGA+TGG | - | chr3.3:4114756-4114775 | MS.gene56219:intron | 40.0% | |
| TTCATCCTTCTCTTAGGTGA+TGG | - | chr3.3:4113606-4113625 | MS.gene56219:intron | 40.0% | |
| ! | GTAGGGTTTTTACCTTCCAT+GGG | - | chr3.3:4114698-4114717 | MS.gene56219:intron | 40.0% |
| ! | TGTAGGGTTTTTACCTTCCA+TGG | - | chr3.3:4114697-4114716 | MS.gene56219:intron | 40.0% |
| !! | ATTTTGGGGGAAATGGACAT+TGG | - | chr3.3:4114387-4114406 | MS.gene56219:intron | 40.0% |
| !! | CTCTTCAATTTTGGGGGAAA+TGG | - | chr3.3:4114380-4114399 | MS.gene56219:intron | 40.0% |
| !! | GAGAGCATAGCACTGTTTTA+TGG | - | chr3.3:4112686-4112705 | MS.gene56219:intron | 40.0% |
| !! | TCCCTAATGTCTGGCTTTAA+AGG | + | chr3.3:4114756-4114775 | None:intergenic | 40.0% |
| !!! | ATTTGGTGCACTCTCACTTT+TGG | - | chr3.3:4113326-4113345 | MS.gene56219:intron | 40.0% |
| !!! | CGACACTCATTTTGAAACTG+AGG | - | chr3.3:4114126-4114145 | MS.gene56219:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.3:4113884-4113903 | None:intergenic | 40.0% |
| AAAGGAAGAAGCAACCGTCT+TGG | - | chr3.3:4115444-4115463 | MS.gene56219:intron | 45.0% | |
| AAGCAATTCGGGACACTTTC+GGG | - | chr3.3:4112332-4112351 | MS.gene56219:intron | 45.0% | |
| ACTCCAAAAGTCTTGCTCAC+TGG | + | chr3.3:4112617-4112636 | None:intergenic | 45.0% | |
| ATAGTGGCATATTGGGGAGA+AGG | - | chr3.3:4115369-4115388 | MS.gene56219:intron | 45.0% | |
| CCCTGTGAGCTTAACTCAAT+TGG | + | chr3.3:4113499-4113518 | None:intergenic | 45.0% | |
| CTTCACTCACAGGAAACAAG+TGG | - | chr3.3:4115496-4115515 | MS.gene56219:intron | 45.0% | |
| GTGCAATCTAATCCATCAGC+TGG | - | chr3.3:4115411-4115430 | MS.gene56219:intron | 45.0% | |
| TCACAGGAAACAAGTGGCAA+TGG | - | chr3.3:4115502-4115521 | MS.gene56219:intron | 45.0% | |
| TCACTTCTCCCGAAAATCAG+AGG | + | chr3.3:4115059-4115078 | None:intergenic | 45.0% | |
| TCCAACGGCTGAAAGCAATT+CGG | - | chr3.3:4112320-4112339 | MS.gene56219:intron | 45.0% | |
| TGGCTGCTGTGCCATATTTA+TGG | - | chr3.3:4113626-4113645 | MS.gene56219:intron | 45.0% | |
| TGGGTCAAGATTATCCGAGT+TGG | + | chr3.3:4114471-4114490 | None:intergenic | 45.0% | |
| TTCTGGTCAGGGTTCAAACT+CGG | - | chr3.3:4115111-4115130 | MS.gene56219:intron | 45.0% | |
| TTGAACTTTCCACCAGCAAG+AGG | + | chr3.3:4114820-4114839 | None:intergenic | 45.0% | |
| !! | AGTGAGCAAGACTTTTGGAG+TGG | - | chr3.3:4112616-4112635 | MS.gene56219:intron | 45.0% |
| !! | GCTGATGGATTAGATTGCAC+TGG | + | chr3.3:4115411-4115430 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.3:4113885-4113904 | None:intergenic | 45.0% |
| !!! | GGTGATGGAATTGCTTTTCG+TGG | - | chr3.3:4115550-4115569 | MS.gene56219:intron | 45.0% |
| !! | TTCATATAATAAAAAATATA+TGG | + | chr3.3:4112525-4112544 | None:intergenic | 5.0% |
| ACAGTGCTTCATCCTCTTGC+TGG | - | chr3.3:4114805-4114824 | MS.gene56219:intron | 50.0% | |
| ACTTTCGGGACAGTGTGCTT+CGG | - | chr3.3:4112346-4112365 | MS.gene56219:intron | 50.0% | |
| AGCAGCCATCACCTAAGAGA+AGG | + | chr3.3:4113614-4113633 | None:intergenic | 50.0% | |
| AGTGTCCGGGATTCAAACCT+CGG | - | chr3.3:4113445-4113464 | MS.gene56219:intron | 50.0% | |
| ATGAGCCGAGGTTTGAATCC+CGG | + | chr3.3:4113453-4113472 | None:intergenic | 50.0% | |
| CAGACATTAGGGATGGTTGC+AGG | - | chr3.3:4114763-4114782 | MS.gene56219:intron | 50.0% | |
| CAGCAGCAAAATCAGGGTGA+TGG | - | chr3.3:4115535-4115554 | MS.gene56219:intron | 50.0% | |
| CCAAAAGTCTTGCTCACTGG+AGG | + | chr3.3:4112614-4112633 | None:intergenic | 50.0% | |
| CCAACGGCTGAAAGCAATTC+GGG | - | chr3.3:4112321-4112340 | MS.gene56219:intron | 50.0% | |
| CTGCAACCATCCCTAATGTC+TGG | + | chr3.3:4114765-4114784 | None:intergenic | 50.0% | |
| TCCCCTCAGCAGCAAAATCA+GGG | - | chr3.3:4115529-4115548 | MS.gene56219:intron | 50.0% | |
| TCTGGTCAGGGTTCAAACTC+GGG | - | chr3.3:4115112-4115131 | MS.gene56219:intron | 50.0% | |
| TTCCCCTCAGCAGCAAAATC+AGG | - | chr3.3:4115528-4115547 | MS.gene56219:intron | 50.0% | |
| ! | ACCCTGATTTTGCTGCTGAG+GGG | + | chr3.3:4115533-4115552 | None:intergenic | 50.0% |
| ! | CACCCTGATTTTGCTGCTGA+GGG | + | chr3.3:4115534-4115553 | None:intergenic | 50.0% |
| ! | CCTCCAGTGAGCAAGACTTT+TGG | - | chr3.3:4112611-4112630 | MS.gene56219:intron | 50.0% |
| ! | TCACCCTGATTTTGCTGCTG+AGG | + | chr3.3:4115535-4115554 | None:intergenic | 50.0% |
| CCCGAATTGCTTTCAGCCGT+TGG | + | chr3.3:4112324-4112343 | None:intergenic | 55.0% | |
| CTTTCGGGACAGTGTGCTTC+GGG | - | chr3.3:4112347-4112366 | MS.gene56219:intron | 55.0% | |
| GGAAGAAGCAACCGTCTTGG+TGG | - | chr3.3:4115447-4115466 | MS.gene56219:intron | 55.0% | |
| GTGCTAGCATAGCCCATGGA+AGG | + | chr3.3:4114713-4114732 | None:intergenic | 55.0% | |
| GTGCTTCATCCTCTTGCTGG+TGG | - | chr3.3:4114808-4114827 | MS.gene56219:intron | 55.0% | |
| TCCAGTGCTAGCATAGCCCA+TGG | + | chr3.3:4114717-4114736 | None:intergenic | 55.0% | |
| ! | TCCATGGGCTATGCTAGCAC+TGG | - | chr3.3:4114713-4114732 | MS.gene56219:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4111966 | 4115597 | 4111966 | ID=MS.gene56219 |
| chr3.3 | mRNA | 4111966 | 4115597 | 4111966 | ID=MS.gene56219.t1;Parent=MS.gene56219 |
| chr3.3 | exon | 4115581 | 4115597 | 4115581 | ID=MS.gene56219.t1.exon1;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4115581 | 4115597 | 4115581 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4114833 | 4114968 | 4114833 | ID=MS.gene56219.t1.exon2;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4114833 | 4114968 | 4114833 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4114589 | 4114662 | 4114589 | ID=MS.gene56219.t1.exon3;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4114589 | 4114662 | 4114589 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4114216 | 4114309 | 4114216 | ID=MS.gene56219.t1.exon4;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4114216 | 4114309 | 4114216 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4113813 | 4113941 | 4113813 | ID=MS.gene56219.t1.exon5;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4113813 | 4113941 | 4113813 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4112705 | 4112797 | 4112705 | ID=MS.gene56219.t1.exon6;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4112705 | 4112797 | 4112705 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| chr3.3 | exon | 4111966 | 4112133 | 4111966 | ID=MS.gene56219.t1.exon7;Parent=MS.gene56219.t1 |
| chr3.3 | CDS | 4111966 | 4112133 | 4111966 | ID=cds.MS.gene56219.t1;Parent=MS.gene56219.t1 |
| Gene Sequence |
| Protein sequence |
