Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058378.t1 | XP_013459201.1 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 4.30E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058378.t1 | Q8VZU9 | 61.0 | 228 | 85 | 1 | 1 | 228 | 1 | 224 | 5.0e-79 | 295.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058378.t1 | A0A072V3Y3 | 97.6 | 254 | 5 | 1 | 1 | 254 | 1 | 253 | 3.1e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050820 | MS.gene058378 | 0.812932 | 3.31E-51 | -1.69E-46 |
| MS.gene051207 | MS.gene058378 | 0.829546 | 4.85E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene058378 | 0.819615 | 1.06E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene058378 | 0.805548 | 1.27E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene058378 | 0.828731 | 7.64E-55 | -1.69E-46 |
| MS.gene054093 | MS.gene058378 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene058378 | 0.816234 | 6.14E-52 | -1.69E-46 |
| MS.gene054826 | MS.gene058378 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene055217 | MS.gene058378 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene058426 | 0.812909 | 3.34E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene065923 | 0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene071059 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene071464 | 0.807994 | 3.85E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene072618 | 0.818772 | 1.65E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene07536 | 0.809322 | 2.00E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene20652 | 0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene25370 | 0.810077 | 1.38E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene27500 | 0.864689 | 1.01E-64 | -1.69E-46 |
| MS.gene058378 | MS.gene29086 | 0.816224 | 6.17E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene29626 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene32231 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene32874 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene34784 | 0.831066 | 2.06E-55 | -1.69E-46 |
| MS.gene058378 | MS.gene37895 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene39666 | 0.829906 | 3.96E-55 | -1.69E-46 |
| MS.gene058378 | MS.gene40119 | 0.802588 | 5.23E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene42548 | 0.811196 | 7.90E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene44461 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene45964 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene48435 | 0.818496 | 1.90E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene48539 | 0.818548 | 1.85E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene49847 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene52059 | 0.806799 | 6.90E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene52061 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene52596 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene53831 | 0.804087 | 2.56E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene53832 | 0.828208 | 1.02E-54 | -1.69E-46 |
| MS.gene058378 | MS.gene54316 | 0.805868 | 1.08E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene56219 | 0.931255 | 4.95E-94 | -1.69E-46 |
| MS.gene058378 | MS.gene60206 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene61139 | 0.812139 | 4.93E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene63153 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene65012 | 0.815878 | 7.38E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene69303 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene70021 | 0.811289 | 7.54E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene70022 | 0.806087 | 9.75E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene70712 | 0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene058378 | MS.gene71495 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene76356 | 0.83451 | 2.87E-56 | -1.69E-46 |
| MS.gene058378 | MS.gene76766 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene058378 | MS.gene79638 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene80082 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene81554 | 0.805597 | 1.24E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene83626 | 0.819881 | 9.20E-53 | -1.69E-46 |
| MS.gene058378 | MS.gene86035 | 0.810965 | 8.87E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene87115 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene87657 | 0.813403 | 2.61E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene87685 | 0.855397 | 6.48E-62 | -1.69E-46 |
| MS.gene058378 | MS.gene87697 | 0.803827 | 2.90E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene88672 | -0.815998 | 6.93E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene89337 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene058378 | MS.gene91005 | 0.827386 | 1.61E-54 | -1.69E-46 |
| MS.gene058378 | MS.gene91428 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene92169 | 0.81838 | 2.02E-52 | -1.69E-46 |
| MS.gene058378 | MS.gene92755 | 0.808491 | 3.02E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene92763 | 0.868264 | 7.43E-66 | -1.69E-46 |
| MS.gene058378 | MS.gene94067 | 0.806555 | 7.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058378.t1 | MTR_3g408340 | 97.143 | 280 | 6 | 2 | 1 | 279 | 1 | 279 | 0.0 | 549 |
| MS.gene058378.t1 | MTR_8g102300 | 63.008 | 246 | 84 | 2 | 1 | 240 | 1 | 245 | 2.78e-110 | 319 |
| MS.gene058378.t1 | MTR_8g102300 | 63.014 | 219 | 81 | 0 | 1 | 219 | 1 | 219 | 2.25e-101 | 296 |
| MS.gene058378.t1 | MTR_8g102300 | 67.327 | 202 | 66 | 0 | 1 | 202 | 1 | 202 | 4.19e-101 | 294 |
| MS.gene058378.t1 | MTR_2g022890 | 34.742 | 213 | 130 | 2 | 6 | 209 | 7 | 219 | 6.46e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058378.t1 | AT4G29330 | 53.405 | 279 | 116 | 3 | 1 | 279 | 1 | 265 | 2.24e-100 | 295 |
| MS.gene058378.t1 | AT4G29330 | 60.476 | 210 | 83 | 0 | 1 | 210 | 1 | 210 | 9.29e-94 | 276 |
| MS.gene058378.t1 | AT4G04860 | 33.333 | 213 | 133 | 2 | 6 | 209 | 7 | 219 | 1.81e-34 | 125 |
| MS.gene058378.t1 | AT4G21810 | 33.333 | 213 | 133 | 2 | 6 | 209 | 7 | 219 | 2.10e-33 | 122 |
Find 61 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAAGAATCAACATTTA+TGG | 0.126417 | 3.2:-2572031 | MS.gene058378:CDS |
| CCTAGAATGTCTGGCTTTAA+AGG | 0.141829 | 3.2:+2571264 | None:intergenic |
| ATCACAAATTTCTTCTTTCT+TGG | 0.159647 | 3.2:-2572833 | MS.gene058378:CDS |
| ATTGCACTGGAGCATTTATT+TGG | 0.195866 | 3.2:+2570620 | None:intergenic |
| GGAAGAGCTTATCGTTTAAA+TGG | 0.247498 | 3.2:-2570448 | MS.gene058378:CDS |
| CCTTTAAAGCCAGACATTCT+AGG | 0.260364 | 3.2:-2571264 | MS.gene058378:CDS |
| ATTTGGTGCACTCTCACTTT+TGG | 0.274790 | 3.2:-2572420 | MS.gene058378:intron |
| TGGCTGCTGTGCCATATTTA+TGG | 0.282477 | 3.2:-2572117 | MS.gene058378:CDS |
| TTTAATGTTTCAGATACTTC+TGG | 0.287318 | 3.2:-2573164 | MS.gene058378:intron |
| TCACAAAATAGTGGCATATT+GGG | 0.287428 | 3.2:-2570653 | MS.gene058378:CDS |
| GTCACAAAATAGTGGCATAT+TGG | 0.296001 | 3.2:-2570654 | MS.gene058378:CDS |
| CTTAGTGTTTAAACGACTTC+AGG | 0.309739 | 3.2:-2573037 | MS.gene058378:intron |
| CCTCCAGTGAGCAAGACTTT+TGG | 0.313821 | 3.2:-2573135 | MS.gene058378:CDS |
| CTAGCACTGGATTTGATATT+CGG | 0.313829 | 3.2:-2571291 | MS.gene058378:CDS |
| TTTGTTTGGATGTTGATATT+TGG | 0.328018 | 3.2:-2572437 | MS.gene058378:CDS |
| TTCCCCTCAGCAGCAAAATC+AGG | 0.331770 | 3.2:-2570491 | MS.gene058378:CDS |
| TAAATGTTGATTCTTGCATT+TGG | 0.332736 | 3.2:+2572034 | None:intergenic |
| ACAGTGCTTCATCCTCTTGC+TGG | 0.343953 | 3.2:-2571210 | MS.gene058378:CDS |
| AGCAAAATATGGTGTTTCAT+TGG | 0.351511 | 3.2:-2572492 | MS.gene058378:CDS |
| ATGAATGGAGACCATAAATA+TGG | 0.359019 | 3.2:+2572106 | None:intergenic |
| AAGAATCAACATTTATGGTT+TGG | 0.373235 | 3.2:-2572026 | MS.gene058378:CDS |
| ATATTTATGGTCTCCATTCA+TGG | 0.388255 | 3.2:-2572104 | MS.gene058378:CDS |
| ACTGCAAATGGAAATGAAAA+TGG | 0.398146 | 3.2:+2572809 | None:intergenic |
| GACATTCTAGGGATGGTTGC+AGG | 0.419213 | 3.2:-2571252 | MS.gene058378:CDS |
| TTGCACTGGAGCATTTATTT+GGG | 0.424481 | 3.2:+2570621 | None:intergenic |
| TTATGGTTTGGTATCATTGA+AGG | 0.428421 | 3.2:-2572014 | MS.gene058378:intron |
| GAATTGTACAGAGCAAAATA+TGG | 0.430905 | 3.2:-2572503 | MS.gene058378:intron |
| TCTGCAGTTCTCTTGTCAAA+TGG | 0.435050 | 3.2:+2572461 | None:intergenic |
| GCAACCATCCCTAGAATGTC+TGG | 0.438466 | 3.2:+2571255 | None:intergenic |
| ACTAAAGAAATTCCCATGAA+TGG | 0.439121 | 3.2:+2572091 | None:intergenic |
| TATATCTATTGCAGGTTTGG+AGG | 0.439394 | 3.2:-2572859 | MS.gene058378:intron |
| ATTATCAGACGAACTGCAAA+TGG | 0.441501 | 3.2:+2572797 | None:intergenic |
| TTGAATATAATTCCAGCTGA+TGG | 0.447371 | 3.2:+2570592 | None:intergenic |
| CTTTAAAGCCAGACATTCTA+GGG | 0.471915 | 3.2:-2571263 | MS.gene058378:CDS |
| ACTCCAAAAGTCTTGCTCAC+TGG | 0.489230 | 3.2:+2573132 | None:intergenic |
| GTGCAATCTAATCCATCAGC+TGG | 0.503029 | 3.2:-2570604 | MS.gene058378:CDS |
| TTAGAAAGAGATTACTCTGC+TGG | 0.504932 | 3.2:+2573579 | None:intergenic |
| TATTTATGGTCTCCATTCAT+GGG | 0.507960 | 3.2:-2572103 | MS.gene058378:CDS |
| TTCTTGCATTTGGAAATTCA+CGG | 0.511989 | 3.2:+2572044 | None:intergenic |
| GTAAACTAGTCACAAAATAG+TGG | 0.512371 | 3.2:-2570662 | MS.gene058378:intron |
| TCCATGGGCTATGCTAGCAC+TGG | 0.517192 | 3.2:-2571304 | MS.gene058378:CDS |
| GGAAGAAGCAACCGTCTTGG+TGG | 0.521063 | 3.2:-2570568 | MS.gene058378:CDS |
| TATGGTGTTTCATTGGAAAG+AGG | 0.521644 | 3.2:-2572485 | MS.gene058378:CDS |
| GCTGATGGATTAGATTGCAC+TGG | 0.546109 | 3.2:+2570607 | None:intergenic |
| CAGCAGCAAAATCAGGGTGA+TGG | 0.548774 | 3.2:-2570484 | MS.gene058378:CDS |
| AAAGCCAGACATTCTAGGGA+TGG | 0.549511 | 3.2:-2571259 | MS.gene058378:CDS |
| GTGCTTCATCCTCTTGCTGG+TGG | 0.558055 | 3.2:-2571207 | MS.gene058378:CDS |
| AAAGGAAGAAGCAACCGTCT+TGG | 0.560738 | 3.2:-2570571 | MS.gene058378:CDS |
| ATAGTGGCATATTGGGGAGA+AGG | 0.563007 | 3.2:-2570646 | MS.gene058378:CDS |
| TCAGCTGGAATTATATTCAA+AGG | 0.564072 | 3.2:-2570589 | MS.gene058378:CDS |
| TTGAACTTTCCACCAGCAAG+AGG | 0.576756 | 3.2:+2571198 | None:intergenic |
| AGCAACAAGAAACACTTCAC+AGG | 0.577690 | 3.2:-2570533 | MS.gene058378:CDS |
| TCCCCTCAGCAGCAAAATCA+GGG | 0.580967 | 3.2:-2570490 | MS.gene058378:CDS |
| AGAAAAGGATACACTAAGAG+AGG | 0.581080 | 3.2:+2571165 | None:intergenic |
| TTGTTTGATTTCCACCAAGA+CGG | 0.581460 | 3.2:+2570557 | None:intergenic |
| TCCAGTGCTAGCATAGCCCA+TGG | 0.608359 | 3.2:+2571303 | None:intergenic |
| CACAAAATAGTGGCATATTG+GGG | 0.612120 | 3.2:-2570652 | MS.gene058378:CDS |
| GTGCTAGCATAGCCCATGGA+AGG | 0.612546 | 3.2:+2571307 | None:intergenic |
| CCAAAAGTCTTGCTCACTGG+AGG | 0.629915 | 3.2:+2573135 | None:intergenic |
| ATTCATATAATATGCAGCTG+TGG | 0.634214 | 3.2:+2573095 | None:intergenic |
| AACACTTCACAGGAAACAAG+TGG | 0.642467 | 3.2:-2570523 | MS.gene058378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATTTATTAATTTT+CGG | + | chr3.2:2571070-2571089 | None:intergenic | 0.0% |
| !!! | ATATTTATTTTCTTTTGTAA+TGG | - | chr3.2:2571496-2571515 | MS.gene058378:intron | 10.0% |
| !!! | TTTTTAAATTTCAATGTTTA+AGG | + | chr3.2:2571041-2571060 | None:intergenic | 10.0% |
| !! | AAATAAAAGGAACAAAAAAA+GGG | + | chr3.2:2571869-2571888 | None:intergenic | 15.0% |
| !! | AAATCATATTCATTTATGAT+TGG | + | chr3.2:2572668-2572687 | None:intergenic | 15.0% |
| !! | ATGCATATATGAAATATAAA+TGG | - | chr3.2:2570551-2570570 | MS.gene058378:CDS | 15.0% |
| !! | GATTGTTTATAACATTTATA+TGG | - | chr3.2:2570511-2570530 | MS.gene058378:CDS | 15.0% |
| !! | TAAATAAAAGGAACAAAAAA+AGG | + | chr3.2:2571870-2571889 | None:intergenic | 15.0% |
| !! | TATTAATTTATTATCCATGA+TGG | - | chr3.2:2570684-2570703 | MS.gene058378:intron | 15.0% |
| !! | TGCTAAAAAAAACATAATAA+TGG | + | chr3.2:2572625-2572644 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTTTTTTTCAGT+TGG | - | chr3.2:2571816-2571835 | MS.gene058378:intron | 15.0% |
| !!! | AATATAATTTTGGTGAAATT+TGG | + | chr3.2:2570622-2570641 | None:intergenic | 15.0% |
| !!! | GCATAATCAAAATATAATTT+TGG | + | chr3.2:2570632-2570651 | None:intergenic | 15.0% |
| !!! | TTAGCTTATATTTTTACAAT+AGG | - | chr3.2:2573256-2573275 | MS.gene058378:intron | 15.0% |
| !!! | TTTTTATTTATATCTATTGC+AGG | - | chr3.2:2571165-2571184 | MS.gene058378:intron | 15.0% |
| !! | AAAAAATATATGGTATAGCA+AGG | + | chr3.2:2570801-2570820 | None:intergenic | 20.0% |
| !! | AAGCTGATATATAATAGAAA+AGG | + | chr3.2:2572885-2572904 | None:intergenic | 20.0% |
| !! | AATTACTTATTAATCCTAAG+AGG | + | chr3.2:2571711-2571730 | None:intergenic | 20.0% |
| !! | AGTTTAACTAATAATTGTTC+TGG | - | chr3.2:2573111-2573130 | MS.gene058378:CDS | 20.0% |
| !! | ATCTAATTGAGATATTCAAA+TGG | + | chr3.2:2572507-2572526 | None:intergenic | 20.0% |
| !! | ATTAATAAGTAATTAGTGTC+CGG | - | chr3.2:2571717-2571736 | MS.gene058378:intron | 20.0% |
| !! | CATTTATATTCTCAAATTGT+TGG | + | chr3.2:2572214-2572233 | None:intergenic | 20.0% |
| !! | GGATGAAACTAATAAATAAA+AGG | + | chr3.2:2571882-2571901 | None:intergenic | 20.0% |
| !! | TCTAATTGAGATATTCAAAT+GGG | + | chr3.2:2572506-2572525 | None:intergenic | 20.0% |
| !! | TTTATGCATTTGAATTAATG+TGG | - | chr3.2:2572556-2572575 | MS.gene058378:intron | 20.0% |
| !!! | AATGTTTAAGGATAAGTTTT+TGG | + | chr3.2:2571029-2571048 | None:intergenic | 20.0% |
| !!! | ATATCATGAATACTTTTTGT+TGG | - | chr3.2:2572597-2572616 | MS.gene058378:intron | 20.0% |
| !!! | ATTAATACTTTTTGTTCTGT+AGG | - | chr3.2:2572695-2572714 | MS.gene058378:intron | 20.0% |
| !!! | ATTGTCATTTTGTAAATTTG+AGG | - | chr3.2:2571393-2571412 | MS.gene058378:intron | 20.0% |
| !!! | TGACATTTTGAAATGAAATA+TGG | + | chr3.2:2572969-2572988 | None:intergenic | 20.0% |
| !!! | TTAATACTTTTTGTTCTGTA+GGG | - | chr3.2:2572696-2572715 | MS.gene058378:intron | 20.0% |
| !!! | TTGAGAAAATAAAAGTGTAT+TGG | - | chr3.2:2572267-2572286 | MS.gene058378:intron | 20.0% |
| !!! | TTGTCATTTTGTAAATTTGA+GGG | - | chr3.2:2571394-2571413 | MS.gene058378:intron | 20.0% |
| !!! | TTTATCAACTCTTCAATTTT+GGG | - | chr3.2:2572389-2572408 | MS.gene058378:intron | 20.0% |
| !!! | TTTTATCAACTCTTCAATTT+TGG | - | chr3.2:2572388-2572407 | MS.gene058378:intron | 20.0% |
| !!! | TTTTTTAATCCTCTGATTTT+CGG | - | chr3.2:2573064-2573083 | MS.gene058378:CDS | 20.0% |
| ! | AAGAATCAACATTTATGGTT+TGG | - | chr3.2:2572006-2572025 | MS.gene058378:intron | 25.0% |
| ! | AATGCAAGAATCAACATTTA+TGG | - | chr3.2:2572001-2572020 | MS.gene058378:intron | 25.0% |
| ! | AGAAGCCAAACAAATAATTA+AGG | + | chr3.2:2572123-2572142 | None:intergenic | 25.0% |
| ! | ATCACAAATTTCTTCTTTCT+TGG | - | chr3.2:2571199-2571218 | MS.gene058378:CDS | 25.0% |
| ! | ATGAATGAGCAGATAAAATT+AGG | - | chr3.2:2572180-2572199 | MS.gene058378:intron | 25.0% |
| ! | ATTATCAAAAGAAGAGTCAT+TGG | + | chr3.2:2572056-2572075 | None:intergenic | 25.0% |
| ! | ATTATGTGATCACAATTTCA+GGG | - | chr3.2:2571365-2571384 | MS.gene058378:intron | 25.0% |
| ! | ATTTATATCTATTGCAGGTT+TGG | - | chr3.2:2571170-2571189 | MS.gene058378:intron | 25.0% |
| ! | CATATATGCATTCAACTAAA+CGG | + | chr3.2:2570542-2570561 | None:intergenic | 25.0% |
| ! | GCAAATGTGACAATTATTAT+AGG | - | chr3.2:2572328-2572347 | MS.gene058378:intron | 25.0% |
| ! | GTTCAAAACTTACAATTTCA+AGG | - | chr3.2:2571424-2571443 | MS.gene058378:intron | 25.0% |
| ! | TATTATATATCAGCTTGCAA+TGG | - | chr3.2:2572889-2572908 | MS.gene058378:intron | 25.0% |
| ! | TTAATAAGTAATTAGTGTCC+GGG | - | chr3.2:2571718-2571737 | MS.gene058378:intron | 25.0% |
| ! | TTTAATGTTTCAGATACTTC+TGG | - | chr3.2:2570868-2570887 | MS.gene058378:intron | 25.0% |
| ! | TTTGTTTGGATGTTGATATT+TGG | - | chr3.2:2571595-2571614 | MS.gene058378:intron | 25.0% |
| !! | ATGATTGGTTAAAAGCATAA+TGG | + | chr3.2:2572653-2572672 | None:intergenic | 25.0% |
| !! | CATAGCCTTAATTATTTGTT+TGG | - | chr3.2:2572115-2572134 | MS.gene058378:CDS | 25.0% |
| !! | TTATCAACTCTTCAATTTTG+GGG | - | chr3.2:2572390-2572409 | MS.gene058378:intron | 25.0% |
| !! | TTTAATTTCAAGTAGTCTGA+TGG | - | chr3.2:2571674-2571693 | MS.gene058378:intron | 25.0% |
| !! | TTTTCAGTATTAGTATGCAA+TGG | + | chr3.2:2571098-2571117 | None:intergenic | 25.0% |
| !! | TTTTCATGATTGTCTATGTT+TGG | - | chr3.2:2571963-2571982 | MS.gene058378:intron | 25.0% |
| !! | TTTTTAATCCTCTGATTTTC+GGG | - | chr3.2:2573065-2573084 | MS.gene058378:CDS | 25.0% |
| !!! | TAAATGTTGATTCTTGCATT+TGG | + | chr3.2:2572001-2572020 | None:intergenic | 25.0% |
| !!! | TGACTAGTTTACTTAAGTTA+AGG | + | chr3.2:2573362-2573381 | None:intergenic | 25.0% |
| ACTAAAGAAATTCCCATGAA+TGG | + | chr3.2:2571944-2571963 | None:intergenic | 30.0% | |
| ACTAATAATTGTTCTGGTCA+AGG | - | chr3.2:2573117-2573136 | MS.gene058378:CDS | 30.0% | |
| ACTGCAAATGGAAATGAAAA+TGG | + | chr3.2:2571226-2571245 | None:intergenic | 30.0% | |
| AGCAAAATATGGTGTTTCAT+TGG | - | chr3.2:2571540-2571559 | MS.gene058378:intron | 30.0% | |
| ATATTGAGACATGCTTAGTA+TGG | - | chr3.2:2570714-2570733 | MS.gene058378:intron | 30.0% | |
| ATATTTATGGTCTCCATTCA+TGG | - | chr3.2:2571928-2571947 | MS.gene058378:intron | 30.0% | |
| ATGAATGGAGACCATAAATA+TGG | + | chr3.2:2571929-2571948 | None:intergenic | 30.0% | |
| ATTCATATAATATGCAGCTG+TGG | + | chr3.2:2570940-2570959 | None:intergenic | 30.0% | |
| CAAATAATTAAGGCTATGTG+AGG | + | chr3.2:2572113-2572132 | None:intergenic | 30.0% | |
| CAGTTAAGATTATTCCAACT+CGG | - | chr3.2:2572471-2572490 | MS.gene058378:CDS | 30.0% | |
| CATTATGTGATCACAATTTC+AGG | - | chr3.2:2571364-2571383 | MS.gene058378:intron | 30.0% | |
| GAAATGAAATATGGTAAGTG+TGG | + | chr3.2:2572960-2572979 | None:intergenic | 30.0% | |
| GAATTGTACAGAGCAAAATA+TGG | - | chr3.2:2571529-2571548 | MS.gene058378:intron | 30.0% | |
| GACAATTATTATAGGACTCA+TGG | - | chr3.2:2572336-2572355 | MS.gene058378:intron | 30.0% | |
| GCATGATCAAGAAAACTAAA+CGG | + | chr3.2:2571141-2571160 | None:intergenic | 30.0% | |
| GCTCATTCTCAAAACAAAAA+AGG | + | chr3.2:2572083-2572102 | None:intergenic | 30.0% | |
| GTAAACTAGTCACAAAATAG+TGG | - | chr3.2:2573370-2573389 | MS.gene058378:intron | 30.0% | |
| TATTTATGGTCTCCATTCAT+GGG | - | chr3.2:2571929-2571948 | MS.gene058378:intron | 30.0% | |
| TCACAAAATAGTGGCATATT+GGG | - | chr3.2:2573379-2573398 | MS.gene058378:intron | 30.0% | |
| TCAGCTGGAATTATATTCAA+AGG | - | chr3.2:2573443-2573462 | MS.gene058378:intron | 30.0% | |
| TGGTTAAAAATTTGCCTCTT+AGG | - | chr3.2:2571694-2571713 | MS.gene058378:intron | 30.0% | |
| TGTGATCACATAATGTTACA+TGG | + | chr3.2:2571359-2571378 | None:intergenic | 30.0% | |
| TTCTTGCATTTGGAAATTCA+CGG | + | chr3.2:2571991-2572010 | None:intergenic | 30.0% | |
| TTGAATATAATTCCAGCTGA+TGG | + | chr3.2:2573443-2573462 | None:intergenic | 30.0% | |
| ! | ATTAGTTTCATCCTTCTCTT+AGG | - | chr3.2:2571889-2571908 | MS.gene058378:intron | 30.0% |
| ! | TATCAACTCTTCAATTTTGG+GGG | - | chr3.2:2572391-2572410 | MS.gene058378:intron | 30.0% |
| !! | TGCTTGAGTAACACTTTTTA+TGG | + | chr3.2:2573221-2573240 | None:intergenic | 30.0% |
| !! | TTATGGTTTGGTATCATTGA+AGG | - | chr3.2:2572018-2572037 | MS.gene058378:CDS | 30.0% |
| ACTTTGAGTGATACTCTTCA+TGG | + | chr3.2:2573023-2573042 | None:intergenic | 35.0% | |
| AGAAAAGGATACACTAAGAG+AGG | + | chr3.2:2572870-2572889 | None:intergenic | 35.0% | |
| ATTATCAGACGAACTGCAAA+TGG | + | chr3.2:2571238-2571257 | None:intergenic | 35.0% | |
| CACAAAATAGTGGCATATTG+GGG | - | chr3.2:2573380-2573399 | MS.gene058378:intron | 35.0% | |
| CTTAGTGTTTAAACGACTTC+AGG | - | chr3.2:2570995-2571014 | MS.gene058378:intron | 35.0% | |
| GCAACTTGATAGAATCATTG+TGG | + | chr3.2:2572920-2572939 | None:intergenic | 35.0% | |
| GGAAGAGCTTATCGTTTAAA+TGG | - | chr3.2:2573584-2573603 | MS.gene058378:intron | 35.0% | |
| GGACTAAAGAGAATGTAACA+TGG | + | chr3.2:2571338-2571357 | None:intergenic | 35.0% | |
| GTCACAAAATAGTGGCATAT+TGG | - | chr3.2:2573378-2573397 | MS.gene058378:intron | 35.0% | |
| TATAACATATACATGAGCCG+AGG | + | chr3.2:2571751-2571770 | None:intergenic | 35.0% | |
| TATATCTATTGCAGGTTTGG+AGG | - | chr3.2:2571173-2571192 | MS.gene058378:intron | 35.0% | |
| TATGGTGTTTCATTGGAAAG+AGG | - | chr3.2:2571547-2571566 | MS.gene058378:intron | 35.0% | |
| TCAATATCTCATAGCCATCA+TGG | + | chr3.2:2570701-2570720 | None:intergenic | 35.0% | |
| TGAGCTTAACTCAATTGGTA+TGG | + | chr3.2:2571780-2571799 | None:intergenic | 35.0% | |
| TTAGAAAGAGATTACTCTGC+TGG | + | chr3.2:2570456-2570475 | None:intergenic | 35.0% | |
| ! | AGAGAACTGCAGATTTTGTT+TGG | - | chr3.2:2571581-2571600 | MS.gene058378:intron | 35.0% |
| ! | ATTGCACTGGAGCATTTATT+TGG | + | chr3.2:2573415-2573434 | None:intergenic | 35.0% |
| ! | CTAGCACTGGATTTGATATT+CGG | - | chr3.2:2572741-2572760 | MS.gene058378:intron | 35.0% |
| ! | TTGCACTGGAGCATTTATTT+GGG | + | chr3.2:2573414-2573433 | None:intergenic | 35.0% |
| ! | TTGTTTGATTTCCACCAAGA+CGG | + | chr3.2:2573478-2573497 | None:intergenic | 35.0% |
| !! | CTTTAAAGCCAGACATTCTA+GGG | - | chr3.2:2572769-2572788 | MS.gene058378:intron | 35.0% |
| AACACTTCACAGGAAACAAG+TGG | - | chr3.2:2573509-2573528 | MS.gene058378:intron | 40.0% | |
| ACCAATTGAGTTAAGCTCAC+AGG | - | chr3.2:2571781-2571800 | MS.gene058378:intron | 40.0% | |
| AGCAACAAGAAACACTTCAC+AGG | - | chr3.2:2573499-2573518 | MS.gene058378:intron | 40.0% | |
| CCAATTGAGTTAAGCTCACA+GGG | - | chr3.2:2571782-2571801 | MS.gene058378:intron | 40.0% | |
| TCTGCAGTTCTCTTGTCAAA+TGG | + | chr3.2:2571574-2571593 | None:intergenic | 40.0% | |
| TTCATCCTTCTCTTAGGTGA+TGG | - | chr3.2:2571895-2571914 | MS.gene058378:intron | 40.0% | |
| TTCTGGTCAAGGTTCAAACT+CGG | - | chr3.2:2573128-2573147 | MS.gene058378:CDS | 40.0% | |
| ! | GTAGGGTTTTTACCTTCCAT+GGG | - | chr3.2:2572713-2572732 | MS.gene058378:intron | 40.0% |
| ! | TGTAGGGTTTTTACCTTCCA+TGG | - | chr3.2:2572712-2572731 | MS.gene058378:intron | 40.0% |
| !! | ATTTTGGGGGAAATGGACAT+TGG | - | chr3.2:2572404-2572423 | MS.gene058378:intron | 40.0% |
| !! | CCTAGAATGTCTGGCTTTAA+AGG | + | chr3.2:2572771-2572790 | None:intergenic | 40.0% |
| !! | CCTTTAAAGCCAGACATTCT+AGG | - | chr3.2:2572768-2572787 | MS.gene058378:intron | 40.0% |
| !! | CTCTTCAATTTTGGGGGAAA+TGG | - | chr3.2:2572397-2572416 | MS.gene058378:intron | 40.0% |
| !! | GAGAGCATAGCACTGTTTTA+TGG | - | chr3.2:2570972-2570991 | MS.gene058378:intron | 40.0% |
| !!! | ATTTGGTGCACTCTCACTTT+TGG | - | chr3.2:2571612-2571631 | MS.gene058378:intron | 40.0% |
| AAAGGAAGAAGCAACCGTCT+TGG | - | chr3.2:2573461-2573480 | MS.gene058378:intron | 45.0% | |
| ACTCCAAAAGTCTTGCTCAC+TGG | + | chr3.2:2570903-2570922 | None:intergenic | 45.0% | |
| ATAGTGGCATATTGGGGAGA+AGG | - | chr3.2:2573386-2573405 | MS.gene058378:intron | 45.0% | |
| ATGGGCAAGATTATCCGAGT+TGG | + | chr3.2:2572488-2572507 | None:intergenic | 45.0% | |
| CCCTGTGAGCTTAACTCAAT+TGG | + | chr3.2:2571785-2571804 | None:intergenic | 45.0% | |
| GTGCAATCTAATCCATCAGC+TGG | - | chr3.2:2573428-2573447 | MS.gene058378:intron | 45.0% | |
| TCACTTCTCCCGAAAATCAG+AGG | + | chr3.2:2573076-2573095 | None:intergenic | 45.0% | |
| TCTGGTCAAGGTTCAAACTC+GGG | - | chr3.2:2573129-2573148 | MS.gene058378:CDS | 45.0% | |
| TGGCTGCTGTGCCATATTTA+TGG | - | chr3.2:2571915-2571934 | MS.gene058378:intron | 45.0% | |
| TTGAACTTTCCACCAGCAAG+AGG | + | chr3.2:2572837-2572856 | None:intergenic | 45.0% | |
| ! | AAAGCCAGACATTCTAGGGA+TGG | - | chr3.2:2572773-2572792 | MS.gene058378:intron | 45.0% |
| !! | AGTGAGCAAGACTTTTGGAG+TGG | - | chr3.2:2570902-2570921 | MS.gene058378:intron | 45.0% |
| !! | GCTGATGGATTAGATTGCAC+TGG | + | chr3.2:2573428-2573447 | None:intergenic | 45.0% |
| !!! | GGTGATGGAATTGCTTTTCG+TGG | - | chr3.2:2573563-2573582 | MS.gene058378:intron | 45.0% |
| !! | TTCATATAATAAAAAATATA+TGG | + | chr3.2:2570811-2570830 | None:intergenic | 5.0% |
| ACAGTGCTTCATCCTCTTGC+TGG | - | chr3.2:2572822-2572841 | MS.gene058378:CDS | 50.0% | |
| AGCAGCCATCACCTAAGAGA+AGG | + | chr3.2:2571903-2571922 | None:intergenic | 50.0% | |
| AGTGTCCGGGATTCAAACCT+CGG | - | chr3.2:2571731-2571750 | MS.gene058378:intron | 50.0% | |
| ATGAGCCGAGGTTTGAATCC+CGG | + | chr3.2:2571739-2571758 | None:intergenic | 50.0% | |
| CAGCAGCAAAATCAGGGTGA+TGG | - | chr3.2:2573548-2573567 | MS.gene058378:intron | 50.0% | |
| CCAAAAGTCTTGCTCACTGG+AGG | + | chr3.2:2570900-2570919 | None:intergenic | 50.0% | |
| GCAACCATCCCTAGAATGTC+TGG | + | chr3.2:2572780-2572799 | None:intergenic | 50.0% | |
| TCCCCTCAGCAGCAAAATCA+GGG | - | chr3.2:2573542-2573561 | MS.gene058378:intron | 50.0% | |
| TTCCCCTCAGCAGCAAAATC+AGG | - | chr3.2:2573541-2573560 | MS.gene058378:intron | 50.0% | |
| ! | ACCCTGATTTTGCTGCTGAG+GGG | + | chr3.2:2573546-2573565 | None:intergenic | 50.0% |
| ! | CACCCTGATTTTGCTGCTGA+GGG | + | chr3.2:2573547-2573566 | None:intergenic | 50.0% |
| ! | CCTCCAGTGAGCAAGACTTT+TGG | - | chr3.2:2570897-2570916 | MS.gene058378:intron | 50.0% |
| ! | GACATTCTAGGGATGGTTGC+AGG | - | chr3.2:2572780-2572799 | MS.gene058378:intron | 50.0% |
| ! | TCACCCTGATTTTGCTGCTG+AGG | + | chr3.2:2573548-2573567 | None:intergenic | 50.0% |
| GGAAGAAGCAACCGTCTTGG+TGG | - | chr3.2:2573464-2573483 | MS.gene058378:intron | 55.0% | |
| GTGCTAGCATAGCCCATGGA+AGG | + | chr3.2:2572728-2572747 | None:intergenic | 55.0% | |
| GTGCTTCATCCTCTTGCTGG+TGG | - | chr3.2:2572825-2572844 | MS.gene058378:CDS | 55.0% | |
| TCCAGTGCTAGCATAGCCCA+TGG | + | chr3.2:2572732-2572751 | None:intergenic | 55.0% | |
| ! | TCCATGGGCTATGCTAGCAC+TGG | - | chr3.2:2572728-2572747 | MS.gene058378:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2570444 | 2573610 | 2570444 | ID=MS.gene058378 |
| chr3.2 | mRNA | 2570444 | 2573610 | 2570444 | ID=MS.gene058378.t1;Parent=MS.gene058378 |
| chr3.2 | exon | 2573594 | 2573610 | 2573594 | ID=MS.gene058378.t1.exon1;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2573594 | 2573610 | 2573594 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2573038 | 2573173 | 2573038 | ID=MS.gene058378.t1.exon2;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2573038 | 2573173 | 2573038 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2572794 | 2572867 | 2572794 | ID=MS.gene058378.t1.exon3;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2572794 | 2572867 | 2572794 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2572421 | 2572514 | 2572421 | ID=MS.gene058378.t1.exon4;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2572421 | 2572514 | 2572421 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2572015 | 2572143 | 2572015 | ID=MS.gene058378.t1.exon5;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2572015 | 2572143 | 2572015 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2571177 | 2571337 | 2571177 | ID=MS.gene058378.t1.exon6;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2571177 | 2571337 | 2571177 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| chr3.2 | exon | 2570444 | 2570675 | 2570444 | ID=MS.gene058378.t1.exon7;Parent=MS.gene058378.t1 |
| chr3.2 | CDS | 2570444 | 2570675 | 2570444 | ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1 |
| Gene Sequence |
| Protein sequence |
