AlfalfaGEDB | MS.gene058378

M. sativa cultivar XinJiangDaYe / MS.gene058378

KEGG: K13989
GO: -
PFAM: PF04511.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058378.t1	XP_013459201.1	97.6	254	5	1	1	254	1	253	4.30E-138	500.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058378.t1	Q8VZU9	61.0	228	85	1	1	228	1	224	5.0e-79	295.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058378.t1	A0A072V3Y3	97.6	254	5	1	1	254	1	253	3.1e-138	500.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050820	MS.gene058378	0.812932	3.31E-51	-1.69E-46
MS.gene051207	MS.gene058378	0.829546	4.85E-55	-1.69E-46
MS.gene052176	MS.gene058378	0.819615	1.06E-52	-1.69E-46
MS.gene052333	MS.gene058378	0.805548	1.27E-49	-1.69E-46
MS.gene052389	MS.gene058378	0.828731	7.64E-55	-1.69E-46
MS.gene054093	MS.gene058378	0.806667	7.36E-50	-1.69E-46
MS.gene054468	MS.gene058378	0.816234	6.14E-52	-1.69E-46
MS.gene054826	MS.gene058378	0.808132	3.60E-50	-1.69E-46
MS.gene055217	MS.gene058378	0.800632	1.32E-48	-1.69E-46
MS.gene058378	MS.gene058426	0.812909	3.34E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058378.t1	MTR_3g408340	97.143	280	6	2	1	279	1	279	0.0	549
MS.gene058378.t1	MTR_8g102300	63.008	246	84	2	1	240	1	245	2.78e-110	319
MS.gene058378.t1	MTR_8g102300	63.014	219	81	0	1	219	1	219	2.25e-101	296
MS.gene058378.t1	MTR_8g102300	67.327	202	66	0	1	202	1	202	4.19e-101	294
MS.gene058378.t1	MTR_2g022890	34.742	213	130	2	6	209	7	219	6.46e-35	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058378.t1	AT4G29330	53.405	279	116	3	1	279	1	265	2.24e-100	295
MS.gene058378.t1	AT4G29330	60.476	210	83	0	1	210	1	210	9.29e-94	276
MS.gene058378.t1	AT4G04860	33.333	213	133	2	6	209	7	219	1.81e-34	125
MS.gene058378.t1	AT4G21810	33.333	213	133	2	6	209	7	219	2.10e-33	122

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Find 61 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAGACATTCTAGGGA+TGG	0.549511	3.2:-2571259	MS.gene058378:CDS
AAAGGAAGAAGCAACCGTCT+TGG	0.560738	3.2:-2570571	MS.gene058378:CDS
AACACTTCACAGGAAACAAG+TGG	0.642467	3.2:-2570523	MS.gene058378:CDS
AAGAATCAACATTTATGGTT+TGG	0.373235	3.2:-2572026	MS.gene058378:CDS
AATGCAAGAATCAACATTTA+TGG	0.126417	3.2:-2572031	MS.gene058378:CDS
ACAGTGCTTCATCCTCTTGC+TGG	0.343953	3.2:-2571210	MS.gene058378:CDS
ACTAAAGAAATTCCCATGAA+TGG	0.439121	3.2:+2572091	None:intergenic
ACTCCAAAAGTCTTGCTCAC+TGG	0.489230	3.2:+2573132	None:intergenic
ACTGCAAATGGAAATGAAAA+TGG	0.398146	3.2:+2572809	None:intergenic
AGAAAAGGATACACTAAGAG+AGG	0.581080	3.2:+2571165	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAAAGAAATTCCCATGAA+TGG	+	chr3.2:2571944-2571963	None:intergenic	30.0%
ACTAATAATTGTTCTGGTCA+AGG	-	chr3.2:2573117-2573136	MS.gene058378:CDS	30.0%
ACTGCAAATGGAAATGAAAA+TGG	+	chr3.2:2571226-2571245	None:intergenic	30.0%
AGCAAAATATGGTGTTTCAT+TGG	-	chr3.2:2571540-2571559	MS.gene058378:intron	30.0%
ATATTGAGACATGCTTAGTA+TGG	-	chr3.2:2570714-2570733	MS.gene058378:intron	30.0%
ATATTTATGGTCTCCATTCA+TGG	-	chr3.2:2571928-2571947	MS.gene058378:intron	30.0%
ATGAATGGAGACCATAAATA+TGG	+	chr3.2:2571929-2571948	None:intergenic	30.0%
ATTCATATAATATGCAGCTG+TGG	+	chr3.2:2570940-2570959	None:intergenic	30.0%
CAAATAATTAAGGCTATGTG+AGG	+	chr3.2:2572113-2572132	None:intergenic	30.0%
CAGTTAAGATTATTCCAACT+CGG	-	chr3.2:2572471-2572490	MS.gene058378:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	2570444	2573610	2570444	ID=MS.gene058378
chr3.2	mRNA	2570444	2573610	2570444	ID=MS.gene058378.t1;Parent=MS.gene058378
chr3.2	exon	2573594	2573610	2573594	ID=MS.gene058378.t1.exon1;Parent=MS.gene058378.t1
chr3.2	CDS	2573594	2573610	2573594	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2573038	2573173	2573038	ID=MS.gene058378.t1.exon2;Parent=MS.gene058378.t1
chr3.2	CDS	2573038	2573173	2573038	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2572794	2572867	2572794	ID=MS.gene058378.t1.exon3;Parent=MS.gene058378.t1
chr3.2	CDS	2572794	2572867	2572794	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2572421	2572514	2572421	ID=MS.gene058378.t1.exon4;Parent=MS.gene058378.t1
chr3.2	CDS	2572421	2572514	2572421	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2572015	2572143	2572015	ID=MS.gene058378.t1.exon5;Parent=MS.gene058378.t1
chr3.2	CDS	2572015	2572143	2572015	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2571177	2571337	2571177	ID=MS.gene058378.t1.exon6;Parent=MS.gene058378.t1
chr3.2	CDS	2571177	2571337	2571177	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1
chr3.2	exon	2570444	2570675	2570444	ID=MS.gene058378.t1.exon7;Parent=MS.gene058378.t1
chr3.2	CDS	2570444	2570675	2570444	ID=cds.MS.gene058378.t1;Parent=MS.gene058378.t1

Gene Sequence

>MS.gene058378

ATGTCTACACCAGCAGAGTAATCTCTTTCTAACTCTCTCATCACAACAAATAAAGTTAATGATTATTGATTGTTTATAACATTTATATGGATTTTCCGTTTAGTTGAATGCATATATGAAATATAAATGGAAAATTATGTATAGAGTTTTTATAATCAAATGTTATTTATATACTCCAAATTTCACCAAAATTATATTTTGATTATGCATCAATTTTGCTTATCATATATCTTATAATTTTATTAATTTATTATCCATGATGGCTATGAGATATTGAGACATGCTTAGTATGGCTGCAACTTACTTTTGAGATTAAACAAGAAGTTTTGTGCTTAGTTTTAAATATAATATTTTCCTTGCTATACCATATATTTTTTATTATATGAATTTCTCTAATTTTCTTAAACAAATTAATGAAATTTTCTTTAATGTTTCAGATACTTCTGGTCTTTACCTCCAGTGAGCAAGACTTTTGGAGTGGCATGTTTCATGACCACAGCTGCATATTATATGAATCTTTATGATGCAGAGAGCATAGCACTGTTTTATGGCTTAGTGTTTAAACGACTTCAGGTTTGTAATCCAAAAACTTATCCTTAAACATTGAAATTTAAAAAGTGTGTCCGAAAATTAATAAATTTAAAAAGTTAGCCATTGCATACTAATACTGAAAATTCATTTTCTGATTCATTCACCGTTTAGTTTTCTTGATCATGCAACATTTTTATTTATATCTATTGCAGGTTTGGAGGCTTATCACAAATTTCTTCTTTCTTGGACCATTTTCATTTCCATTTGCAGTTCGTCTGATAATGATGTAAATAGCTTCTATGACTTACTTATACATCTCATTCTGCAGTATTTTTGTGAAATAATGATCATAATTCATAACCATGTTACATTCTCTTTAGTCCATGTAACATTATGTGATCACAATTTCAGGGACTAAATTGTCATTTTGTAAATTTGAGGGATTAGTAGTTCAAAACTTACAATTTCAAGGAAAAAAATGTTGATTTACTCATTATATTTACATTGCAATATAGTCTCAAATATTTATTTTCTTTTGTAATGGTCTGAATAATGAATTGTACAGAGCAAAATATGGTGTTTCATTGGAAAGAGGTCCATTTGACAAGAGAACTGCAGATTTTGTTTGGATGTTGATATTTGGTGCACTCTCACTTTTGGTATGTGTGAACAAATACAGTTTATTTTTTTATTTTTTATTTTAATTTCAAGTAGTCTGATGGTTAAAAATTTGCCTCTTAGGATTAATAAGTAATTAGTGTCCGGGATTCAAACCTCGGCTCATGTATATGTTATACAATGTCCATACCAATTGAGTTAAGCTCACAGGGACAGTTTATTTAACTTTTTTTTTTTTTCAGTTGGAGAAATGAAAATGACTTTTCTATTGCTCCCTTTTTTTGTTCCTTTTATTTATTAGTTTCATCCTTCTCTTAGGTGATGGCTGCTGTGCCATATTTATGGTCTCCATTCATGGGAATTTCTTTAGTTTTCATGATTGTCTATGTTTGGAGCCGTGAATTTCCAAATGCAAGAATCAACATTTATGGTTTGGTATCATTGAAGGTAAGATGAATTTCCAATGACTCTTCTTTTGATAATTCTGCCTTTTTTGTTTTGAGAATGAGCTAGTTCACCTCACATAGCCTTAATTATTTGTTTGGCTTCTATATTTTTTGCATCAAAATCACATAGTAATATGTTTGATGAATGAGCAGATAAAATTAGGATTGTGATCCAACAATTTGAGAATATAAATGCATAATATTAATAATGTTAATTAGAGTGTGCAATTGAGAAAATAAAAGTGTATTGGAAACTAAAAGTGACATTCTTTTTAGAATATTTTTGTGTGCAAATGTGACAATTATTATAGGACTCATGGAGTATTATTTTTTTTAAAATATTTCATTTTTTTATCAACTCTTCAATTTTGGGGGAAATGGACATTGGTAATCAGTGTTCAATAATAAATAAAGTCTAGTCATTAATTATTTCAGTTAAGATTATTCCAACTCGGATAATCTTGCCCATTTGAATATCTCAATTAGATTTTAAAATATCTCAATTAATATTTTAATATTTATGCATTTGAATTAATGTGGTGCAGCATAATGTCACTCATATCATGAATACTTTTTGTTGGAACCATTATTATGTTTTTTTTAGCAAAGAACCATTATGCTTTTAACCAATCATAAATGAATATGATTTAGATTGAATTAATACTTTTTGTTCTGTAGGGTTTTTACCTTCCATGGGCTATGCTAGCACTGGATTTGATATTCGGAAATCCTTTAAAGCCAGACATTCTAGGGATGGTTGCAGGACACTTATATTACTTCTTAACAGTGCTTCATCCTCTTGCTGGTGGAAAGTTCAAGTTCAATACTCCTCTCTTAGTGTATCCTTTTCTATTATATATCAGCTTGCAATGGTCACTCCACAATGATTCTATCAAGTTGCTCTCAATTATTTTTTGACCACACTTACCATATTTCATTTCAAAATGTCACTATGAAAATTTAGAAATAAGACACAAAGATCCATGAAGAGTATCACTCAAAGTACAATTCTACGATCTTGATAATTTTTTAATCCTCTGATTTTCGGGAGAAGTGATCTGAATGTAAGTAAAGTTTAACTAATAATTGTTCTGGTCAAGGTTCAAACTCGGGTTTTCTCTAATGATTCGAACTCTAAAGTCAAAATCATAAACGAATCATATTTTTCAACACTAAGATCCATAAAAAGTGTTACTCAAGCATAGTTCTATGTTAAATTAGCTTATATTTTTACAATAGGTTAATATATTCTTATAATATCTTACATATCATTTATGATTGTTCTTATGTACGTAATATGTTGATACATTCTTAAATAATCCTTAACTTAAGTAAACTAGTCACAAAATAGTGGCATATTGGGGAGAAGGTACCCAAATAAATGCTCCAGTGCAATCTAATCCATCAGCTGGAATTATATTCAAAGGAAGAAGCAACCGTCTTGGTGGAAATCAAACAACAGCAACAAGAAACACTTCACAGGAAACAAGTGGCAATGCTTCTTCCCCTCAGCAGCAAAATCAGGGTGATGGAATTGCTTTTCGTGGAAGAGCTTATCGTTTAAATGGATGA

Protein sequence

>MS.gene058378.t1

MSTPAEYFWSLPPVSKTFGVACFMTTAAYYMNLYDAESIALFYGLVFKRLQVWRLITNFFFLGPFSFPFAVRLIMIAKYGVSLERGPFDKRTADFVWMLIFGALSLLVMAAVPYLWSPFMGISLVFMIVYVWSREFPNARINIYGLVSLKGFYLPWAMLALDLIFGNPLKPDILGMVAGHLYYFLTVLHPLAGGKFKFNTPLLVHKIVAYWGEGTQINAPVQSNPSAGIIFKGRSNRLGGNQTTATRNTSQETSGNASSPQQQNQGDGIAFRGRAYRLNG