Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56230.t1 | XP_003598209.1 | 98.2 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 4.80E-229 | 803.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56230.t1 | O22780 | 62.9 | 429 | 159 | 0 | 1 | 429 | 109 | 537 | 1.4e-141 | 504.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56230.t1 | G7IVP1 | 98.2 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 3.4e-229 | 803.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058403 | MS.gene56230 | 0.98035 | 5.14E-150 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56230.t1 | MTR_3g008470 | 98.157 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 0.0 | 857 |
| MS.gene56230.t1 | MTR_2g031810 | 41.783 | 359 | 188 | 4 | 52 | 399 | 10 | 358 | 1.56e-83 | 260 |
| MS.gene56230.t1 | MTR_2g031790 | 39.011 | 364 | 178 | 6 | 38 | 401 | 16 | 335 | 1.14e-68 | 221 |
| MS.gene56230.t1 | MTR_3g051190 | 31.096 | 447 | 250 | 3 | 1 | 389 | 41 | 487 | 3.33e-59 | 201 |
| MS.gene56230.t1 | MTR_2g031770 | 46.734 | 199 | 85 | 4 | 1 | 188 | 48 | 236 | 3.41e-49 | 167 |
| MS.gene56230.t1 | MTR_1g014250 | 28.392 | 398 | 265 | 7 | 6 | 395 | 82 | 467 | 1.42e-32 | 129 |
| MS.gene56230.t1 | MTR_1g014250 | 27.405 | 343 | 229 | 7 | 61 | 395 | 14 | 344 | 3.86e-23 | 100 |
| MS.gene56230.t1 | MTR_1g103530 | 28.254 | 315 | 214 | 5 | 1 | 309 | 137 | 445 | 6.55e-21 | 95.9 |
| MS.gene56230.t1 | MTR_1g103530 | 27.046 | 281 | 197 | 4 | 33 | 309 | 4 | 280 | 3.96e-14 | 74.3 |
| MS.gene56230.t1 | MTR_1g014220 | 27.682 | 289 | 182 | 10 | 6 | 281 | 74 | 348 | 7.25e-13 | 70.5 |
| MS.gene56230.t1 | MTR_2g031780 | 44.776 | 67 | 37 | 0 | 333 | 399 | 2 | 68 | 2.66e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56230.t1 | AT2G33280 | 62.937 | 429 | 159 | 0 | 1 | 429 | 1 | 429 | 0.0 | 515 |
| MS.gene56230.t1 | AT2G33280 | 62.937 | 429 | 159 | 0 | 1 | 429 | 109 | 537 | 3.12e-180 | 514 |
| MS.gene56230.t1 | AT1G04570 | 62.299 | 435 | 159 | 2 | 1 | 434 | 112 | 542 | 7.92e-159 | 459 |
| MS.gene56230.t1 | AT2G33280 | 61.408 | 355 | 137 | 0 | 75 | 429 | 1 | 355 | 6.07e-144 | 415 |
| MS.gene56230.t1 | AT1G04570 | 61.097 | 383 | 144 | 2 | 53 | 434 | 16 | 394 | 1.54e-132 | 387 |
| MS.gene56230.t1 | AT1G64890 | 41.584 | 404 | 222 | 3 | 1 | 397 | 44 | 440 | 1.09e-88 | 276 |
| MS.gene56230.t1 | AT5G54860 | 32.579 | 442 | 245 | 6 | 1 | 389 | 41 | 482 | 4.07e-59 | 201 |
| MS.gene56230.t1 | AT2G32040 | 28.158 | 380 | 261 | 6 | 1 | 373 | 151 | 525 | 1.03e-29 | 121 |
| MS.gene56230.t1 | AT2G32040 | 28.158 | 380 | 261 | 6 | 1 | 373 | 20 | 394 | 1.07e-29 | 120 |
| MS.gene56230.t1 | AT5G25050 | 24.337 | 415 | 292 | 7 | 6 | 411 | 77 | 478 | 3.15e-27 | 114 |
| MS.gene56230.t1 | AT1G79710 | 23.317 | 416 | 305 | 5 | 6 | 416 | 81 | 487 | 8.51e-24 | 103 |
| MS.gene56230.t1 | AT1G79710 | 23.317 | 416 | 305 | 5 | 6 | 416 | 81 | 487 | 8.51e-24 | 103 |
| MS.gene56230.t1 | AT5G10820 | 26.396 | 394 | 247 | 11 | 21 | 393 | 104 | 475 | 1.33e-23 | 103 |
| MS.gene56230.t1 | AT5G25040 | 25.359 | 418 | 270 | 10 | 23 | 410 | 95 | 500 | 9.06e-23 | 100 |
| MS.gene56230.t1 | AT5G25040 | 24.685 | 397 | 274 | 8 | 23 | 410 | 95 | 475 | 4.77e-22 | 98.6 |
| MS.gene56230.t1 | AT1G79710 | 23.620 | 326 | 235 | 5 | 6 | 326 | 81 | 397 | 5.25e-18 | 85.9 |
| MS.gene56230.t1 | AT5G25040 | 26.235 | 324 | 214 | 8 | 23 | 337 | 95 | 402 | 4.94e-17 | 83.6 |
| MS.gene56230.t1 | AT5G25040 | 27.513 | 189 | 133 | 1 | 233 | 417 | 151 | 339 | 1.51e-15 | 78.2 |
| MS.gene56230.t1 | AT5G25040 | 26.502 | 283 | 183 | 8 | 23 | 296 | 95 | 361 | 1.15e-12 | 69.7 |
Find 93 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTGATGTTATCTATAT+TGG | 0.193250 | 3.3:+4236031 | MS.gene56230:CDS |
| GGTCAGTTGATGCTTCTTTC+AGG | 0.200974 | 3.3:+4238156 | MS.gene56230:CDS |
| CCGTACTTTATAACCGATAT+TGG | 0.258220 | 3.3:+4238181 | MS.gene56230:CDS |
| TATGGCTAGTAATCTCAATT+TGG | 0.267578 | 3.3:+4235937 | None:intergenic |
| GATGCTCTTGTAGCTGAGTA+TGG | 0.275436 | 3.3:+4237715 | MS.gene56230:CDS |
| GTTACTTCTTGATCTTGTTT+TGG | 0.301857 | 3.3:+4238260 | MS.gene56230:CDS |
| GTTTAAACTCCTTCCTTTCT+CGG | 0.304522 | 3.3:+4238365 | MS.gene56230:CDS |
| GGATCTGCACTGCGCCTATC+AGG | 0.329497 | 3.3:-4238224 | None:intergenic |
| CAAGGAGCGAACACCTCATT+TGG | 0.337799 | 3.3:-4238312 | None:intergenic |
| ATTGAACCGATCCATCTTAA+AGG | 0.346598 | 3.3:-4238579 | None:intergenic |
| GCCACTGTTCCAATGCTTAC+GGG | 0.347306 | 3.3:+4238063 | MS.gene56230:CDS |
| TCAACAAGAGAGGATTCTTT+AGG | 0.351653 | 3.3:+4237904 | MS.gene56230:CDS |
| GTTGCAAGATTTAGAGTTGA+TGG | 0.359251 | 3.3:-4237937 | None:intergenic |
| CCATGAACGCGTATGATTGT+AGG | 0.365663 | 3.3:-4237759 | None:intergenic |
| ATCCTATCATCAATAGTTAG+TGG | 0.367560 | 3.3:+4238456 | MS.gene56230:CDS |
| CTGTGTCTGATAGCAAAATA+TGG | 0.376189 | 3.3:-4238088 | None:intergenic |
| AGACAGATAAATCTTAAATT+CGG | 0.377256 | 3.3:+4238285 | MS.gene56230:CDS |
| TATGGGAAGAAACACAAAAT+TGG | 0.382333 | 3.3:+4237733 | MS.gene56230:CDS |
| CCTACAATCATACGCGTTCA+TGG | 0.384503 | 3.3:+4237759 | MS.gene56230:CDS |
| AATATCATGAACATGATTCT+TGG | 0.386591 | 3.3:-4237844 | None:intergenic |
| CAGCTTTACTACCTTTAAGA+TGG | 0.403194 | 3.3:+4238568 | MS.gene56230:CDS |
| AGCTGTGCTTCTCAGTAACT+TGG | 0.405069 | 3.3:+4237666 | MS.gene56230:CDS |
| TGCCACTGTTCCAATGCTTA+CGG | 0.411546 | 3.3:+4238062 | MS.gene56230:CDS |
| ATACCTCCGGTGATAATGTA+AGG | 0.420502 | 3.3:-4236070 | None:intergenic |
| AGAGATCCTTCACAGCCTTT+CGG | 0.425140 | 3.3:-4238408 | None:intergenic |
| CTAGACCAACCGATGATCAT+AGG | 0.439316 | 3.3:-4238126 | None:intergenic |
| CCAATATCGGTTATAAAGTA+CGG | 0.443188 | 3.3:-4238181 | None:intergenic |
| TTAGCCGCAGGTGGAATCTT+AGG | 0.445298 | 3.3:+4237784 | MS.gene56230:CDS |
| AGAGTTGGAAAAGTCGTGAT+TGG | 0.449734 | 3.3:+4238672 | MS.gene56230:CDS |
| GAAGTAACGACGAAGCGTAT+AGG | 0.450700 | 3.3:-4238245 | None:intergenic |
| CATATAGGCGCGAAAGGGAA+TGG | 0.456974 | 3.3:+4238706 | MS.gene56230:CDS |
| TGCTAGTTGTACAGATAGTA+AGG | 0.458544 | 3.3:-4237872 | None:intergenic |
| TCTGATGTTATCTATATTGG+TGG | 0.463711 | 3.3:+4236034 | MS.gene56230:CDS |
| TCTGAATCAGACTGTGACAT+AGG | 0.479357 | 3.3:-4238603 | None:intergenic |
| ATCGGTTGGTCTAGAGTGAT+TGG | 0.481020 | 3.3:+4238135 | MS.gene56230:CDS |
| TCTTTGCTCGGCATTACATC+CGG | 0.488077 | 3.3:+4238501 | MS.gene56230:CDS |
| AGCCACTAACTATTGATGAT+AGG | 0.489495 | 3.3:-4238458 | None:intergenic |
| ATGGTGGCTAAACCACTCTA+TGG | 0.489848 | 3.3:+4236004 | MS.gene56230:CDS |
| GTATTCTGCTAATCTTCCTA+TGG | 0.490689 | 3.3:+4235985 | MS.gene56230:CDS |
| GTAAGCACTTCACGTGCAGC+AGG | 0.495854 | 3.3:-4237631 | None:intergenic |
| GTTGGATTGGCCTCTTTGCT+CGG | 0.508973 | 3.3:+4238489 | MS.gene56230:CDS |
| TGTACAAGTTGCAATATTGA+AGG | 0.509895 | 3.3:-4235962 | None:intergenic |
| ATCCTTTGCAACTTCAGTAA+TGG | 0.515704 | 3.3:-4237695 | None:intergenic |
| AGATTTAGAGTTGATGGTTG+TGG | 0.516019 | 3.3:-4237931 | None:intergenic |
| AATATGGAGCCCGTAAGCAT+TGG | 0.527587 | 3.3:-4238072 | None:intergenic |
| TAATGCATATAGGCGCGAAA+GGG | 0.528536 | 3.3:+4238701 | MS.gene56230:CDS |
| TAAATTCGGAATTCCAAATG+AGG | 0.534129 | 3.3:+4238299 | MS.gene56230:CDS |
| TTTGCGAACAGAACCGAGAA+AGG | 0.535403 | 3.3:-4238378 | None:intergenic |
| TTACTACCTTTAAGATGGAT+CGG | 0.535770 | 3.3:+4238573 | MS.gene56230:CDS |
| GATCCAACGATCCATAAAAG+TGG | 0.536954 | 3.3:-4238036 | None:intergenic |
| ATATAGGCGCGAAAGGGAAT+GGG | 0.537383 | 3.3:+4238707 | MS.gene56230:CDS |
| GCGCGTAGAAACAGAAGAGT+TGG | 0.537625 | 3.3:+4238657 | MS.gene56230:CDS |
| ATTACATCCGGTGATTACTC+AGG | 0.538427 | 3.3:+4238513 | MS.gene56230:CDS |
| CGAACAGAACCGAGAAAGGA+AGG | 0.544556 | 3.3:-4238374 | None:intergenic |
| GCGTTCATGGCATTAGCCGC+AGG | 0.556853 | 3.3:+4237772 | MS.gene56230:CDS |
| GCTGTGCTTCTCAGTAACTT+GGG | 0.559091 | 3.3:+4237667 | MS.gene56230:CDS |
| TTTCCGATGAGAAACCTGAT+AGG | 0.566163 | 3.3:+4238210 | MS.gene56230:CDS |
| TTATGTCCGAAAGGCTGTGA+AGG | 0.568883 | 3.3:+4238402 | MS.gene56230:CDS |
| CAAAGCTGATGCAAGGAAAG+AGG | 0.571448 | 3.3:-4238433 | None:intergenic |
| ATCCATTACTGAAGTTGCAA+AGG | 0.575712 | 3.3:+4237693 | MS.gene56230:CDS |
| ATCATGAACATGATTCTTGG+AGG | 0.577392 | 3.3:-4237841 | None:intergenic |
| TTGGTTCGATTAATGCATAT+AGG | 0.577741 | 3.3:+4238691 | MS.gene56230:CDS |
| GGGAAGAAACACAAAATTGG+CGG | 0.578871 | 3.3:+4237736 | MS.gene56230:CDS |
| AATCTTGATCCTATGATCAT+CGG | 0.579039 | 3.3:+4238117 | MS.gene56230:CDS |
| TTAATGCATATAGGCGCGAA+AGG | 0.580820 | 3.3:+4238700 | MS.gene56230:CDS |
| ATGCTCTTGTAGCTGAGTAT+GGG | 0.582866 | 3.3:+4237716 | MS.gene56230:CDS |
| AATTTCTTTCTCAACAAGAG+AGG | 0.586622 | 3.3:+4237894 | MS.gene56230:CDS |
| TCAGAAAGAATTCCATAGAG+TGG | 0.590482 | 3.3:-4236016 | None:intergenic |
| TCTTGCAACACAATCCATCT+CGG | 0.591171 | 3.3:+4237951 | MS.gene56230:CDS |
| GTACAAGTTGCAATATTGAA+GGG | 0.593637 | 3.3:-4235961 | None:intergenic |
| TACCTCCGGTGATAATGTAA+GGG | 0.595022 | 3.3:-4236069 | None:intergenic |
| ATCCAACGATCCATAAAAGT+GGG | 0.595254 | 3.3:-4238035 | None:intergenic |
| TTCTGCTAATCTTCCTATGG+TGG | 0.599176 | 3.3:+4235988 | MS.gene56230:CDS |
| TTCATGGCATTAGCCGCAGG+TGG | 0.601108 | 3.3:+4237775 | MS.gene56230:CDS |
| GATTACTCAGGCTTGACTGT+GGG | 0.603520 | 3.3:+4238525 | MS.gene56230:CDS |
| ATCTTAGGCAACTTGATCGG+TGG | 0.604287 | 3.3:+4237799 | MS.gene56230:CDS |
| TTCGCAAATTTATGTCCGAA+AGG | 0.605242 | 3.3:+4238393 | MS.gene56230:CDS |
| GCCCGTAAGCATTGGAACAG+TGG | 0.605847 | 3.3:-4238064 | None:intergenic |
| ATAGGATCAAAGCTGATGCA+AGG | 0.610715 | 3.3:-4238440 | None:intergenic |
| AGAATCCCTTACATTATCAC+CGG | 0.614685 | 3.3:+4236064 | MS.gene56230:CDS |
| GGAATCTTAGGCAACTTGAT+CGG | 0.615694 | 3.3:+4237796 | MS.gene56230:CDS |
| TTGATCCTATGATCATCGGT+TGG | 0.620203 | 3.3:+4238121 | MS.gene56230:CDS |
| AGTCAAGCCTGAGTAATCAC+CGG | 0.627145 | 3.3:-4238520 | None:intergenic |
| TCTGCCAAACCCGAAAAGCA+AGG | 0.628364 | 3.3:-4238330 | None:intergenic |
| AAGCACAGCTGCAACTAAGA+CGG | 0.631279 | 3.3:-4237653 | None:intergenic |
| TAGAGTGGTTTAGCCACCAT+AGG | 0.639848 | 3.3:-4236001 | None:intergenic |
| GCGCCTATCAGGTTTCTCAT+CGG | 0.641117 | 3.3:-4238213 | None:intergenic |
| TGATTACTCAGGCTTGACTG+TGG | 0.648155 | 3.3:+4238524 | MS.gene56230:CDS |
| AAAGGGAATGGGAATCGCAA+AGG | 0.648256 | 3.3:+4238718 | MS.gene56230:CDS |
| ATCCCTTACATTATCACCGG+AGG | 0.652632 | 3.3:+4236067 | MS.gene56230:CDS |
| GTTGCCTAAGATTCCACCTG+CGG | 0.660068 | 3.3:-4237788 | None:intergenic |
| TAAGCACTTCACGTGCAGCA+GGG | 0.681319 | 3.3:-4237630 | None:intergenic |
| GGATGTAATGCCGAGCAAAG+AGG | 0.684382 | 3.3:-4238499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTTATAAAAAAAATCAA+TGG | - | chr3.3:4236553-4236572 | None:intergenic | 10.0% |
| !!! | GATTTTATTATCATCAATTT+TGG | + | chr3.3:4236644-4236663 | MS.gene56230:intron | 15.0% |
| !!! | TTTTAAGTTATTTTGTGTTT+AGG | + | chr3.3:4237048-4237067 | MS.gene56230:intron | 15.0% |
| !! | ACGAATATCAAGTTAAATAA+AGG | - | chr3.3:4237478-4237497 | None:intergenic | 20.0% |
| !! | AGACAGATAAATCTTAAATT+CGG | + | chr3.3:4238285-4238304 | MS.gene56230:CDS | 20.0% |
| !! | ATTTAACACATTAACAGAAA+AGG | - | chr3.3:4236120-4236139 | None:intergenic | 20.0% |
| !! | GAAACCTTTATATTACATTA+GGG | + | chr3.3:4236958-4236977 | MS.gene56230:intron | 20.0% |
| !! | GTTATGAATAAAATTTACCT+TGG | + | chr3.3:4237371-4237390 | MS.gene56230:intron | 20.0% |
| !! | TGAAACCTTTATATTACATT+AGG | + | chr3.3:4236957-4236976 | MS.gene56230:intron | 20.0% |
| !!! | ACCAAATAAGTTTCATTTTA+TGG | - | chr3.3:4237559-4237578 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTTTAGGTATTAA+GGG | + | chr3.3:4237057-4237076 | MS.gene56230:intron | 20.0% |
| !!! | CCAAATAAGTTTCATTTTAT+GGG | - | chr3.3:4237558-4237577 | None:intergenic | 20.0% |
| !!! | GTAATATTTTTATTCAACCA+AGG | - | chr3.3:4237391-4237410 | None:intergenic | 20.0% |
| !!! | TATTTTGTGTTTAGGTATTA+AGG | + | chr3.3:4237056-4237075 | MS.gene56230:intron | 20.0% |
| !!! | TTACATTTTAATCTATGATG+AGG | + | chr3.3:4236169-4236188 | MS.gene56230:intron | 20.0% |
| !!! | TTGTATTTTCAATTTCTACA+CGG | + | chr3.3:4237321-4237340 | MS.gene56230:intron | 20.0% |
| ! | AAAAGACATTAAGAAATGCA+AGG | + | chr3.3:4237445-4237464 | MS.gene56230:intron | 25.0% |
| ! | AATATCATGAACATGATTCT+TGG | - | chr3.3:4237847-4237866 | None:intergenic | 25.0% |
| ! | AGAGTTATCTATCTTAATAC+CGG | - | chr3.3:4237263-4237282 | None:intergenic | 25.0% |
| ! | ATGTAATATAAAGGTTTCAG+AGG | - | chr3.3:4236956-4236975 | None:intergenic | 25.0% |
| ! | CCCATAAAATGAAACTTATT+TGG | + | chr3.3:4237555-4237574 | MS.gene56230:intron | 25.0% |
| ! | CTTTCTGATGTTATCTATAT+TGG | + | chr3.3:4236031-4236050 | MS.gene56230:CDS | 25.0% |
| ! | GTGTATTATAAGATTTCAAG+AGG | + | chr3.3:4237412-4237431 | MS.gene56230:intron | 25.0% |
| ! | TAGGAAATTGAGAAAATCAA+AGG | + | chr3.3:4236477-4236496 | MS.gene56230:intron | 25.0% |
| ! | TATTCATAACGAAATTGATC+TGG | - | chr3.3:4237361-4237380 | None:intergenic | 25.0% |
| ! | TGATATTGAGATGTAGATAT+TGG | + | chr3.3:4236318-4236337 | MS.gene56230:intron | 25.0% |
| !! | AAGAAAAAGTATGAGTAGAA+GGG | + | chr3.3:4238635-4238654 | MS.gene56230:CDS | 25.0% |
| AACTATCAAAAAACAAGCGT+CGG | + | chr3.3:4237975-4237994 | MS.gene56230:CDS | 30.0% | |
| AATCTTGATCCTATGATCAT+CGG | + | chr3.3:4238117-4238136 | MS.gene56230:CDS | 30.0% | |
| AATTTCTTTCTCAACAAGAG+AGG | + | chr3.3:4237894-4237913 | MS.gene56230:CDS | 30.0% | |
| ACACGATTCAGTGTAAATAT+AGG | + | chr3.3:4236247-4236266 | MS.gene56230:intron | 30.0% | |
| ACAGCCCTAATGTAATATAA+AGG | - | chr3.3:4236965-4236984 | None:intergenic | 30.0% | |
| ATCCAAACAAAAGGAATTAC+AGG | - | chr3.3:4237015-4237034 | None:intergenic | 30.0% | |
| ATCCTATCATCAATAGTTAG+TGG | + | chr3.3:4238456-4238475 | MS.gene56230:CDS | 30.0% | |
| GAGTTATCTATCTTAATACC+GGG | - | chr3.3:4237262-4237281 | None:intergenic | 30.0% | |
| GTACAAGTTGCAATATTGAA+GGG | - | chr3.3:4235964-4235983 | None:intergenic | 30.0% | |
| TAAATTCGGAATTCCAAATG+AGG | + | chr3.3:4238299-4238318 | MS.gene56230:CDS | 30.0% | |
| TAACATGTGGTATGTTCAAT+TGG | + | chr3.3:4237291-4237310 | MS.gene56230:intron | 30.0% | |
| TAACTGACACTTCAGATTAA+AGG | - | chr3.3:4236427-4236446 | None:intergenic | 30.0% | |
| TATGGGAAGAAACACAAAAT+TGG | + | chr3.3:4237733-4237752 | MS.gene56230:CDS | 30.0% | |
| TCTGATGTTATCTATATTGG+TGG | + | chr3.3:4236034-4236053 | MS.gene56230:CDS | 30.0% | |
| TGAGATGTAGATATTGGTAA+TGG | + | chr3.3:4236324-4236343 | MS.gene56230:intron | 30.0% | |
| TGTACAAGTTGCAATATTGA+AGG | - | chr3.3:4235965-4235984 | None:intergenic | 30.0% | |
| TGTTTAGGTATTAAGGGAAA+GGG | + | chr3.3:4237063-4237082 | MS.gene56230:intron | 30.0% | |
| TTAGATAGATTAGTAGTCAC+TGG | - | chr3.3:4236779-4236798 | None:intergenic | 30.0% | |
| TTCAGTGTAAATATAGGTGT+CGG | + | chr3.3:4236253-4236272 | MS.gene56230:intron | 30.0% | |
| TTTGATATTGCGACAAAATG+CGG | + | chr3.3:4236899-4236918 | MS.gene56230:intron | 30.0% | |
| ! | CCAATATCGGTTATAAAGTA+CGG | - | chr3.3:4238184-4238203 | None:intergenic | 30.0% |
| ! | GAAGAAAAAGTATGAGTAGA+AGG | + | chr3.3:4238634-4238653 | MS.gene56230:CDS | 30.0% |
| ! | TTGGTTCGATTAATGCATAT+AGG | + | chr3.3:4238691-4238710 | MS.gene56230:CDS | 30.0% |
| !! | GTATTTCTTACCCACTTTTA+TGG | + | chr3.3:4238025-4238044 | MS.gene56230:CDS | 30.0% |
| !! | GTTACTTCTTGATCTTGTTT+TGG | + | chr3.3:4238260-4238279 | MS.gene56230:CDS | 30.0% |
| !! | TCGGAAACTTTTTCCAATAT+CGG | - | chr3.3:4238197-4238216 | None:intergenic | 30.0% |
| !! | TTACTACCTTTAAGATGGAT+CGG | + | chr3.3:4238573-4238592 | MS.gene56230:CDS | 30.0% |
| !!! | TCAATAGTTAGTGGCTTTTT+TGG | + | chr3.3:4238465-4238484 | MS.gene56230:CDS | 30.0% |
| !!! | TTTTTTGATAGTTTCCGAGA+TGG | - | chr3.3:4237968-4237987 | None:intergenic | 30.0% |
| !!! | TTTTTTTGCAGATCTTTGCT+TGG | + | chr3.3:4237590-4237609 | MS.gene56230:CDS | 30.0% |
| AAGGGAAAGGGAAAATACTT+GGG | + | chr3.3:4237075-4237094 | MS.gene56230:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | - | chr3.3:4237159-4237178 | None:intergenic | 35.0% | |
| AGAAAAGGCAAAAGCTATGT+GGG | - | chr3.3:4236105-4236124 | None:intergenic | 35.0% | |
| AGAATCCCTTACATTATCAC+CGG | + | chr3.3:4236064-4236083 | MS.gene56230:CDS | 35.0% | |
| AGACATTAAGAAATGCAAGG+TGG | + | chr3.3:4237448-4237467 | MS.gene56230:intron | 35.0% | |
| AGGTAACAACTCACAAGAAT+TGG | + | chr3.3:4236697-4236716 | MS.gene56230:intron | 35.0% | |
| ATCAGACTGATCCAAACAAA+AGG | - | chr3.3:4237024-4237043 | None:intergenic | 35.0% | |
| ATCATGAACATGATTCTTGG+AGG | - | chr3.3:4237844-4237863 | None:intergenic | 35.0% | |
| ATCCAACGATCCATAAAAGT+GGG | - | chr3.3:4238038-4238057 | None:intergenic | 35.0% | |
| ATCCATTACTGAAGTTGCAA+AGG | + | chr3.3:4237693-4237712 | MS.gene56230:CDS | 35.0% | |
| ATCCTTTGCAACTTCAGTAA+TGG | - | chr3.3:4237698-4237717 | None:intergenic | 35.0% | |
| ATTGAACCGATCCATCTTAA+AGG | - | chr3.3:4238582-4238601 | None:intergenic | 35.0% | |
| CATAATCCATAATGCATGTG+TGG | + | chr3.3:4236829-4236848 | MS.gene56230:intron | 35.0% | |
| CCGTACTTTATAACCGATAT+TGG | + | chr3.3:4238181-4238200 | MS.gene56230:CDS | 35.0% | |
| CTGTGTCTGATAGCAAAATA+TGG | - | chr3.3:4238091-4238110 | None:intergenic | 35.0% | |
| GAAAGTGATTGAACGTAAAC+CGG | + | chr3.3:4236363-4236382 | MS.gene56230:intron | 35.0% | |
| GAACATACCACATGTTAACA+CGG | - | chr3.3:4237288-4237307 | None:intergenic | 35.0% | |
| GAGTGAATATCTCACTTTAG+TGG | + | chr3.3:4236598-4236617 | MS.gene56230:intron | 35.0% | |
| GCAAAGATCTGCAAAAAAAC+TGG | - | chr3.3:4237589-4237608 | None:intergenic | 35.0% | |
| GTATTCTGCTAATCTTCCTA+TGG | + | chr3.3:4235985-4236004 | MS.gene56230:CDS | 35.0% | |
| GTGTTTAGGTATTAAGGGAA+AGG | + | chr3.3:4237062-4237081 | MS.gene56230:intron | 35.0% | |
| GTTTAAACTCCTTCCTTTCT+CGG | + | chr3.3:4238365-4238384 | MS.gene56230:CDS | 35.0% | |
| TAAGGGAAAGGGAAAATACT+TGG | + | chr3.3:4237074-4237093 | MS.gene56230:intron | 35.0% | |
| TAATGCATGTGTGGTTAAGA+TGG | + | chr3.3:4236838-4236857 | MS.gene56230:intron | 35.0% | |
| TCAACAAGAGAGGATTCTTT+AGG | + | chr3.3:4237904-4237923 | MS.gene56230:CDS | 35.0% | |
| TCAGAAAGAATTCCATAGAG+TGG | - | chr3.3:4236019-4236038 | None:intergenic | 35.0% | |
| TCTTAACCACACATGCATTA+TGG | - | chr3.3:4236838-4236857 | None:intergenic | 35.0% | |
| TGCTAGTTGTACAGATAGTA+AGG | - | chr3.3:4237875-4237894 | None:intergenic | 35.0% | |
| TGGGGATAAATTTATACCTC+CGG | - | chr3.3:4236086-4236105 | None:intergenic | 35.0% | |
| TTCCTAACTACTCACTTTAG+AGG | - | chr3.3:4236463-4236482 | None:intergenic | 35.0% | |
| TTCGCAAATTTATGTCCGAA+AGG | + | chr3.3:4238393-4238412 | MS.gene56230:CDS | 35.0% | |
| ! | AGCCACTAACTATTGATGAT+AGG | - | chr3.3:4238461-4238480 | None:intergenic | 35.0% |
| ! | CAGCTTTACTACCTTTAAGA+TGG | + | chr3.3:4238568-4238587 | MS.gene56230:CDS | 35.0% |
| ! | GTTGCAAGATTTAGAGTTGA+TGG | - | chr3.3:4237940-4237959 | None:intergenic | 35.0% |
| !! | AGATTTAGAGTTGATGGTTG+TGG | - | chr3.3:4237934-4237953 | None:intergenic | 35.0% |
| !! | TCACAGCTTGTTACAGATAA+GGG | - | chr3.3:4236678-4236697 | None:intergenic | 35.0% |
| AACTGCAATTACGGCTGTAT+TGG | - | chr3.3:4236926-4236945 | None:intergenic | 40.0% | |
| AATGAAACACAGACACTCCT+CGG | - | chr3.3:4236294-4236313 | None:intergenic | 40.0% | |
| ACACATTGCCACATAACATC+TGG | - | chr3.3:4237187-4237206 | None:intergenic | 40.0% | |
| ACTCTTTCCGTGTTAACATG+TGG | + | chr3.3:4237278-4237297 | MS.gene56230:intron | 40.0% | |
| AGAGTTGGAAAAGTCGTGAT+TGG | + | chr3.3:4238672-4238691 | MS.gene56230:CDS | 40.0% | |
| ATAGGATCAAAGCTGATGCA+AGG | - | chr3.3:4238443-4238462 | None:intergenic | 40.0% | |
| ATGCTCTTGTAGCTGAGTAT+GGG | + | chr3.3:4237716-4237735 | MS.gene56230:CDS | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | chr3.3:4237118-4237137 | MS.gene56230:intron | 40.0% | |
| ATTACATCCGGTGATTACTC+AGG | + | chr3.3:4238513-4238532 | MS.gene56230:CDS | 40.0% | |
| CACAACACATACAACACATC+TGG | - | chr3.3:4237160-4237179 | None:intergenic | 40.0% | |
| CACATTGCCACATAACATCT+GGG | - | chr3.3:4237186-4237205 | None:intergenic | 40.0% | |
| CAGAAAAGGCAAAAGCTATG+TGG | - | chr3.3:4236106-4236125 | None:intergenic | 40.0% | |
| CTGAAGTAGGTTATCAGTTG+CGG | - | chr3.3:4236991-4237010 | None:intergenic | 40.0% | |
| CTTATCTGTAACAAGCTGTG+AGG | + | chr3.3:4236677-4236696 | MS.gene56230:intron | 40.0% | |
| GAAAAGGCAAAAGCTATGTG+GGG | - | chr3.3:4236104-4236123 | None:intergenic | 40.0% | |
| GATCCAACGATCCATAAAAG+TGG | - | chr3.3:4238039-4238058 | None:intergenic | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | + | chr3.3:4237160-4237179 | MS.gene56230:intron | 40.0% | |
| GGAATCTTAGGCAACTTGAT+CGG | + | chr3.3:4237796-4237815 | MS.gene56230:CDS | 40.0% | |
| GGGAAGAAACACAAAATTGG+CGG | + | chr3.3:4237736-4237755 | MS.gene56230:CDS | 40.0% | |
| GGTCACTACAACTGCAATTA+CGG | - | chr3.3:4236935-4236954 | None:intergenic | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr3.3:4237107-4237126 | MS.gene56230:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr3.3:4237126-4237107 | None:intergenic | 40.0% | |
| TAATGCATATAGGCGCGAAA+GGG | + | chr3.3:4238701-4238720 | MS.gene56230:CDS | 40.0% | |
| TCTGAATCAGACTGTGACAT+AGG | - | chr3.3:4238606-4238625 | None:intergenic | 40.0% | |
| TCTTGCAACACAATCCATCT+CGG | + | chr3.3:4237951-4237970 | MS.gene56230:CDS | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr3.3:4237106-4237125 | MS.gene56230:intron | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr3.3:4237125-4237106 | None:intergenic | 40.0% | |
| TTAATGCATATAGGCGCGAA+AGG | + | chr3.3:4238700-4238719 | MS.gene56230:CDS | 40.0% | |
| TTCTGCTAATCTTCCTATGG+TGG | + | chr3.3:4235988-4236007 | MS.gene56230:CDS | 40.0% | |
| TTGATCCTATGATCATCGGT+TGG | + | chr3.3:4238121-4238140 | MS.gene56230:CDS | 40.0% | |
| TTTCCGATGAGAAACCTGAT+AGG | + | chr3.3:4238210-4238229 | MS.gene56230:CDS | 40.0% | |
| ! | ATACCTCCGGTGATAATGTA+AGG | - | chr3.3:4236073-4236092 | None:intergenic | 40.0% |
| ! | GGCCTGTAATTCCTTTTGTT+TGG | + | chr3.3:4237010-4237029 | MS.gene56230:intron | 40.0% |
| ! | TACCTCCGGTGATAATGTAA+GGG | - | chr3.3:4236072-4236091 | None:intergenic | 40.0% |
| !! | AGCCTCTAAAGTGAGTAGTT+AGG | + | chr3.3:4236458-4236477 | MS.gene56230:intron | 40.0% |
| !! | ATGGTTCTAATTTGCAGCCA+CGG | + | chr3.3:4236857-4236876 | MS.gene56230:intron | 40.0% |
| !! | CTCACAGCTTGTTACAGATA+AGG | - | chr3.3:4236679-4236698 | None:intergenic | 40.0% |
| !! | TACCCACTTTTATGGATCGT+TGG | + | chr3.3:4238033-4238052 | MS.gene56230:CDS | 40.0% |
| !!! | GTTAGTGGCTTTTTTGGTGT+TGG | + | chr3.3:4238471-4238490 | MS.gene56230:CDS | 40.0% |
| !!! | TGGCTTTTTTGGTGTTGGAT+TGG | + | chr3.3:4238476-4238495 | MS.gene56230:CDS | 40.0% |
| AAACCGGTAACCACATGTGT+TGG | + | chr3.3:4236379-4236398 | MS.gene56230:intron | 45.0% | |
| AAAGGGAATGGGAATCGCAA+AGG | + | chr3.3:4238718-4238737 | MS.gene56230:CDS | 45.0% | |
| AAGCACAGCTGCAACTAAGA+CGG | - | chr3.3:4237656-4237675 | None:intergenic | 45.0% | |
| AATATGGAGCCCGTAAGCAT+TGG | - | chr3.3:4238075-4238094 | None:intergenic | 45.0% | |
| ACACCAACACATGTGGTTAC+CGG | - | chr3.3:4236385-4236404 | None:intergenic | 45.0% | |
| AGAGATCCTTCACAGCCTTT+CGG | - | chr3.3:4238411-4238430 | None:intergenic | 45.0% | |
| AGCTGTGCTTCTCAGTAACT+TGG | + | chr3.3:4237666-4237685 | MS.gene56230:CDS | 45.0% | |
| AGGAATTACAGGCCTGAAGT+AGG | - | chr3.3:4237004-4237023 | None:intergenic | 45.0% | |
| AGTCAAGCCTGAGTAATCAC+CGG | - | chr3.3:4238523-4238542 | None:intergenic | 45.0% | |
| ATATAGGCGCGAAAGGGAAT+GGG | + | chr3.3:4238707-4238726 | MS.gene56230:CDS | 45.0% | |
| ATCCCTTACATTATCACCGG+AGG | + | chr3.3:4236067-4236086 | MS.gene56230:CDS | 45.0% | |
| ATCTTAGGCAACTTGATCGG+TGG | + | chr3.3:4237799-4237818 | MS.gene56230:CDS | 45.0% | |
| ATGGTGGCTAAACCACTCTA+TGG | + | chr3.3:4236004-4236023 | MS.gene56230:CDS | 45.0% | |
| ATGTGGCAATGTGTGTTGTG+TGG | + | chr3.3:4237193-4237212 | MS.gene56230:intron | 45.0% | |
| CAAAGCTGATGCAAGGAAAG+AGG | - | chr3.3:4238436-4238455 | None:intergenic | 45.0% | |
| CAACACAACACCAACACATG+TGG | - | chr3.3:4236392-4236411 | None:intergenic | 45.0% | |
| CACAACACAACACCTTTGTG+TGG | - | chr3.3:4237133-4237152 | None:intergenic | 45.0% | |
| CCATGAACGCGTATGATTGT+AGG | - | chr3.3:4237762-4237781 | None:intergenic | 45.0% | |
| CCTACAATCATACGCGTTCA+TGG | + | chr3.3:4237759-4237778 | MS.gene56230:CDS | 45.0% | |
| CGCAACTGATAACCTACTTC+AGG | + | chr3.3:4236989-4237008 | MS.gene56230:intron | 45.0% | |
| CTAGACCAACCGATGATCAT+AGG | - | chr3.3:4238129-4238148 | None:intergenic | 45.0% | |
| GAAGTAACGACGAAGCGTAT+AGG | - | chr3.3:4238248-4238267 | None:intergenic | 45.0% | |
| GATGCTCTTGTAGCTGAGTA+TGG | + | chr3.3:4237715-4237734 | MS.gene56230:CDS | 45.0% | |
| GATTACTCAGGCTTGACTGT+GGG | + | chr3.3:4238525-4238544 | MS.gene56230:CDS | 45.0% | |
| GCTGTGCTTCTCAGTAACTT+GGG | + | chr3.3:4237667-4237686 | MS.gene56230:CDS | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr3.3:4237212-4237231 | MS.gene56230:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr3.3:4237231-4237212 | None:intergenic | 45.0% | |
| TAGAGTGGTTTAGCCACCAT+AGG | - | chr3.3:4236004-4236023 | None:intergenic | 45.0% | |
| TCTTTGCTCGGCATTACATC+CGG | + | chr3.3:4238501-4238520 | MS.gene56230:CDS | 45.0% | |
| TGATTACTCAGGCTTGACTG+TGG | + | chr3.3:4238524-4238543 | MS.gene56230:CDS | 45.0% | |
| TGCCACTGTTCCAATGCTTA+CGG | + | chr3.3:4238062-4238081 | MS.gene56230:CDS | 45.0% | |
| TTATGTCCGAAAGGCTGTGA+AGG | + | chr3.3:4238402-4238421 | MS.gene56230:CDS | 45.0% | |
| TTTGCGAACAGAACCGAGAA+AGG | - | chr3.3:4238381-4238400 | None:intergenic | 45.0% | |
| ! | GGTCAGTTGATGCTTCTTTC+AGG | + | chr3.3:4238156-4238175 | MS.gene56230:CDS | 45.0% |
| !! | ATCGGTTGGTCTAGAGTGAT+TGG | + | chr3.3:4238135-4238154 | MS.gene56230:CDS | 45.0% |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | + | chr3.3:4237133-4237152 | MS.gene56230:intron | 45.0% |
| !! | CACATGTGTTGGTGTTGTGT+TGG | + | chr3.3:4236390-4236409 | MS.gene56230:intron | 45.0% |
| !! | CTTAATACCGGGAAGCACTT+GGG | - | chr3.3:4237251-4237270 | None:intergenic | 45.0% |
| !! | TAGTAGTCACTGGCTTTGCT+TGG | - | chr3.3:4236769-4236788 | None:intergenic | 45.0% |
| !! | TCTTAATACCGGGAAGCACT+TGG | - | chr3.3:4237252-4237271 | None:intergenic | 45.0% |
| !!! | ACAAGCGTCGGATCTTTTTG+TGG | + | chr3.3:4237987-4238006 | MS.gene56230:CDS | 45.0% |
| CAAGGAGCGAACACCTCATT+TGG | - | chr3.3:4238315-4238334 | None:intergenic | 50.0% | |
| CATATAGGCGCGAAAGGGAA+TGG | + | chr3.3:4238706-4238725 | MS.gene56230:CDS | 50.0% | |
| CGAACAGAACCGAGAAAGGA+AGG | - | chr3.3:4238377-4238396 | None:intergenic | 50.0% | |
| GATGAGGCACGTATACGACA+TGG | + | chr3.3:4236185-4236204 | MS.gene56230:intron | 50.0% | |
| GCCACTGTTCCAATGCTTAC+GGG | + | chr3.3:4238063-4238082 | MS.gene56230:CDS | 50.0% | |
| GCGCCTATCAGGTTTCTCAT+CGG | - | chr3.3:4238216-4238235 | None:intergenic | 50.0% | |
| GCGCGTAGAAACAGAAGAGT+TGG | + | chr3.3:4238657-4238676 | MS.gene56230:CDS | 50.0% | |
| GGATGTAATGCCGAGCAAAG+AGG | - | chr3.3:4238502-4238521 | None:intergenic | 50.0% | |
| GTTGCCTAAGATTCCACCTG+CGG | - | chr3.3:4237791-4237810 | None:intergenic | 50.0% | |
| TAAGCACTTCACGTGCAGCA+GGG | - | chr3.3:4237633-4237652 | None:intergenic | 50.0% | |
| TATGTCACCCAAGTGCTTCC+CGG | + | chr3.3:4237241-4237260 | MS.gene56230:intron | 50.0% | |
| TCTGCCAAACCCGAAAAGCA+AGG | - | chr3.3:4238333-4238352 | None:intergenic | 50.0% | |
| TGTGTGGCCCAGATGTTATG+TGG | + | chr3.3:4237176-4237195 | MS.gene56230:intron | 50.0% | |
| TTAGCCGCAGGTGGAATCTT+AGG | + | chr3.3:4237784-4237803 | MS.gene56230:CDS | 50.0% | |
| ! | CTAATTTGCAGCCACGGTTG+CGG | + | chr3.3:4236863-4236882 | MS.gene56230:intron | 50.0% |
| !! | ATATAGGTGTCGGTGTCGTG+TGG | + | chr3.3:4236263-4236282 | MS.gene56230:intron | 50.0% |
| !! | GGTGTTCGCTCCTTGCTTTT+CGG | + | chr3.3:4238320-4238339 | MS.gene56230:CDS | 50.0% |
| !! | GTGTTCGCTCCTTGCTTTTC+GGG | + | chr3.3:4238321-4238340 | MS.gene56230:CDS | 50.0% |
| !! | GTTGGATTGGCCTCTTTGCT+CGG | + | chr3.3:4238489-4238508 | MS.gene56230:CDS | 50.0% |
| GTAAGCACTTCACGTGCAGC+AGG | - | chr3.3:4237634-4237653 | None:intergenic | 55.0% | |
| TTCATGGCATTAGCCGCAGG+TGG | + | chr3.3:4237775-4237794 | MS.gene56230:CDS | 55.0% | |
| !! | GCCCGTAAGCATTGGAACAG+TGG | - | chr3.3:4238067-4238086 | None:intergenic | 55.0% |
| !!! | CGCTCCTTGCTTTTCGGGTT+TGG | + | chr3.3:4238326-4238345 | MS.gene56230:CDS | 55.0% |
| GCGTTCATGGCATTAGCCGC+AGG | + | chr3.3:4237772-4237791 | MS.gene56230:CDS | 60.0% | |
| GGATCTGCACTGCGCCTATC+AGG | - | chr3.3:4238227-4238246 | None:intergenic | 60.0% | |
| TCGCAGCATAACCGCAACCG+TGG | - | chr3.3:4236877-4236896 | None:intergenic | 60.0% | |
| ! | GGTGTCGTGTGGCTAATCCG+AGG | + | chr3.3:4236274-4236293 | MS.gene56230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4235938 | 4238743 | 4235938 | ID=MS.gene56230 |
| chr3.3 | mRNA | 4235938 | 4238743 | 4235938 | ID=MS.gene56230.t1;Parent=MS.gene56230 |
| chr3.3 | exon | 4235938 | 4236088 | 4235938 | ID=MS.gene56230.t1.exon1;Parent=MS.gene56230.t1 |
| chr3.3 | CDS | 4235938 | 4236088 | 4235938 | ID=cds.MS.gene56230.t1;Parent=MS.gene56230.t1 |
| chr3.3 | exon | 4237590 | 4238743 | 4237590 | ID=MS.gene56230.t1.exon2;Parent=MS.gene56230.t1 |
| chr3.3 | CDS | 4237590 | 4238743 | 4237590 | ID=cds.MS.gene56230.t1;Parent=MS.gene56230.t1 |
| Gene Sequence |
| Protein sequence |
