Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058403.t1 | XP_003598209.1 | 98.2 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 4.80E-229 | 803.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058403.t1 | O22780 | 62.9 | 429 | 159 | 0 | 1 | 429 | 109 | 537 | 1.4e-141 | 504.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058403.t1 | G7IVP1 | 98.2 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 3.4e-229 | 803.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058403 | MS.gene26704 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene058403 | MS.gene30963 | 0.815879 | 7.37E-52 | -1.69E-46 |
| MS.gene058403 | MS.gene45497 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene058403 | MS.gene56230 | 0.98035 | 5.14E-150 | -1.69E-46 |
| MS.gene058403 | MS.gene59980 | 0.803563 | 3.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058403.t1 | MTR_3g008470 | 98.157 | 434 | 8 | 0 | 1 | 434 | 126 | 559 | 0.0 | 857 |
| MS.gene058403.t1 | MTR_2g031810 | 41.783 | 359 | 188 | 4 | 52 | 399 | 10 | 358 | 1.56e-83 | 260 |
| MS.gene058403.t1 | MTR_2g031790 | 39.011 | 364 | 178 | 6 | 38 | 401 | 16 | 335 | 1.14e-68 | 221 |
| MS.gene058403.t1 | MTR_3g051190 | 31.096 | 447 | 250 | 3 | 1 | 389 | 41 | 487 | 3.33e-59 | 201 |
| MS.gene058403.t1 | MTR_2g031770 | 46.734 | 199 | 85 | 4 | 1 | 188 | 48 | 236 | 3.41e-49 | 167 |
| MS.gene058403.t1 | MTR_1g014250 | 28.392 | 398 | 265 | 7 | 6 | 395 | 82 | 467 | 1.42e-32 | 129 |
| MS.gene058403.t1 | MTR_1g014250 | 27.405 | 343 | 229 | 7 | 61 | 395 | 14 | 344 | 3.86e-23 | 100 |
| MS.gene058403.t1 | MTR_1g103530 | 28.254 | 315 | 214 | 5 | 1 | 309 | 137 | 445 | 6.55e-21 | 95.9 |
| MS.gene058403.t1 | MTR_1g103530 | 27.046 | 281 | 197 | 4 | 33 | 309 | 4 | 280 | 3.96e-14 | 74.3 |
| MS.gene058403.t1 | MTR_1g014220 | 27.682 | 289 | 182 | 10 | 6 | 281 | 74 | 348 | 7.25e-13 | 70.5 |
| MS.gene058403.t1 | MTR_2g031780 | 44.776 | 67 | 37 | 0 | 333 | 399 | 2 | 68 | 2.66e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058403.t1 | AT2G33280 | 62.937 | 429 | 159 | 0 | 1 | 429 | 1 | 429 | 0.0 | 515 |
| MS.gene058403.t1 | AT2G33280 | 62.937 | 429 | 159 | 0 | 1 | 429 | 109 | 537 | 3.12e-180 | 514 |
| MS.gene058403.t1 | AT1G04570 | 62.299 | 435 | 159 | 2 | 1 | 434 | 112 | 542 | 7.92e-159 | 459 |
| MS.gene058403.t1 | AT2G33280 | 61.408 | 355 | 137 | 0 | 75 | 429 | 1 | 355 | 6.07e-144 | 415 |
| MS.gene058403.t1 | AT1G04570 | 61.097 | 383 | 144 | 2 | 53 | 434 | 16 | 394 | 1.54e-132 | 387 |
| MS.gene058403.t1 | AT1G64890 | 41.584 | 404 | 222 | 3 | 1 | 397 | 44 | 440 | 1.09e-88 | 276 |
| MS.gene058403.t1 | AT5G54860 | 32.579 | 442 | 245 | 6 | 1 | 389 | 41 | 482 | 4.07e-59 | 201 |
| MS.gene058403.t1 | AT2G32040 | 28.158 | 380 | 261 | 6 | 1 | 373 | 151 | 525 | 1.03e-29 | 121 |
| MS.gene058403.t1 | AT2G32040 | 28.158 | 380 | 261 | 6 | 1 | 373 | 20 | 394 | 1.07e-29 | 120 |
| MS.gene058403.t1 | AT5G25050 | 24.337 | 415 | 292 | 7 | 6 | 411 | 77 | 478 | 3.15e-27 | 114 |
| MS.gene058403.t1 | AT1G79710 | 23.317 | 416 | 305 | 5 | 6 | 416 | 81 | 487 | 8.51e-24 | 103 |
| MS.gene058403.t1 | AT1G79710 | 23.317 | 416 | 305 | 5 | 6 | 416 | 81 | 487 | 8.51e-24 | 103 |
| MS.gene058403.t1 | AT5G10820 | 26.396 | 394 | 247 | 11 | 21 | 393 | 104 | 475 | 1.33e-23 | 103 |
| MS.gene058403.t1 | AT5G25040 | 25.359 | 418 | 270 | 10 | 23 | 410 | 95 | 500 | 9.06e-23 | 100 |
| MS.gene058403.t1 | AT5G25040 | 24.685 | 397 | 274 | 8 | 23 | 410 | 95 | 475 | 4.77e-22 | 98.6 |
| MS.gene058403.t1 | AT1G79710 | 23.620 | 326 | 235 | 5 | 6 | 326 | 81 | 397 | 5.25e-18 | 85.9 |
| MS.gene058403.t1 | AT5G25040 | 26.235 | 324 | 214 | 8 | 23 | 337 | 95 | 402 | 4.94e-17 | 83.6 |
| MS.gene058403.t1 | AT5G25040 | 27.513 | 189 | 133 | 1 | 233 | 417 | 151 | 339 | 1.51e-15 | 78.2 |
| MS.gene058403.t1 | AT5G25040 | 26.502 | 283 | 183 | 8 | 23 | 296 | 95 | 361 | 1.15e-12 | 69.7 |
Find 93 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCAGTTGATGCTTCTTTC+AGG | 0.200974 | 3.2:+2920267 | MS.gene058403:CDS |
| CTTTCTGATGTTATATATAT+TGG | 0.204167 | 3.2:+2918131 | MS.gene058403:CDS |
| CCGTACTTTATAACCGATAT+TGG | 0.258220 | 3.2:+2920292 | MS.gene058403:CDS |
| TATGGCTAGTAATCTCAATT+TGG | 0.267578 | 3.2:+2918037 | None:intergenic |
| GATGCTCTTGTAGCTGAGTA+TGG | 0.275436 | 3.2:+2919826 | MS.gene058403:CDS |
| GTTACTTCTTGATCTTGTTT+TGG | 0.301857 | 3.2:+2920371 | MS.gene058403:CDS |
| GTTTAAACTCCTTCCTTTCT+CGG | 0.304522 | 3.2:+2920476 | MS.gene058403:CDS |
| GGATCTGCACTGCGCCTATC+AGG | 0.329497 | 3.2:-2920335 | None:intergenic |
| CAAGGAGCGAACACCTCATT+TGG | 0.337799 | 3.2:-2920423 | None:intergenic |
| ATTGAACCGATCCATCTTAA+AGG | 0.346598 | 3.2:-2920690 | None:intergenic |
| GCCACTGTTCCAATGCTTAC+GGG | 0.347306 | 3.2:+2920174 | MS.gene058403:CDS |
| TCAACAAGAGAGGATTCTTT+AGG | 0.351653 | 3.2:+2920015 | MS.gene058403:CDS |
| GTTGCAAGATTTAGAGTTGA+TGG | 0.359251 | 3.2:-2920048 | None:intergenic |
| CCATGAACGCGTATGATTGT+AGG | 0.365663 | 3.2:-2919870 | None:intergenic |
| ATCCTATCATCAATAGTTAG+TGG | 0.367560 | 3.2:+2920567 | MS.gene058403:CDS |
| CTGTGTCTGATAGCAAAATA+TGG | 0.376189 | 3.2:-2920199 | None:intergenic |
| AGACAGATAAATCTTAAATT+CGG | 0.377256 | 3.2:+2920396 | MS.gene058403:CDS |
| TATGGGAAGAAACACAAAAT+TGG | 0.382333 | 3.2:+2919844 | MS.gene058403:CDS |
| CCTACAATCATACGCGTTCA+TGG | 0.384503 | 3.2:+2919870 | MS.gene058403:CDS |
| AATATCATGAACATGATTCT+TGG | 0.386591 | 3.2:-2919955 | None:intergenic |
| CAGCTTTACTACCTTTAAGA+TGG | 0.403194 | 3.2:+2920679 | MS.gene058403:CDS |
| AGCTGTGCTTCTCAGTAACT+TGG | 0.405069 | 3.2:+2919777 | MS.gene058403:CDS |
| TGCCACTGTTCCAATGCTTA+CGG | 0.411546 | 3.2:+2920173 | MS.gene058403:CDS |
| AGAGATCCTTCACAGCCTTT+CGG | 0.425140 | 3.2:-2920519 | None:intergenic |
| CTAGACCAACCGATGATCAT+AGG | 0.439316 | 3.2:-2920237 | None:intergenic |
| CCAATATCGGTTATAAAGTA+CGG | 0.443188 | 3.2:-2920292 | None:intergenic |
| TTAGCCGCAGGTGGAATCTT+AGG | 0.445298 | 3.2:+2919895 | MS.gene058403:CDS |
| AGAGTTGGAAAAGTCGTGAT+TGG | 0.449734 | 3.2:+2920783 | MS.gene058403:CDS |
| GAAGTAACGACGAAGCGTAT+AGG | 0.450700 | 3.2:-2920356 | None:intergenic |
| ATACCTCCAGTGATAATGTA+AGG | 0.452475 | 3.2:-2918170 | None:intergenic |
| CATATAGGCGCGAAAGGGAA+TGG | 0.456974 | 3.2:+2920817 | MS.gene058403:CDS |
| TGCTAGTTGTACAGATAGTA+AGG | 0.458544 | 3.2:-2919983 | None:intergenic |
| TCTGATGTTATATATATTGG+TGG | 0.472456 | 3.2:+2918134 | MS.gene058403:CDS |
| TCTGAATCAGACTGTGACAT+AGG | 0.479357 | 3.2:-2920714 | None:intergenic |
| ATCGGTTGGTCTAGAGTGAT+TGG | 0.481020 | 3.2:+2920246 | MS.gene058403:CDS |
| TCTTTGCTCGGCATTACATC+CGG | 0.488077 | 3.2:+2920612 | MS.gene058403:CDS |
| AGCCACTAACTATTGATGAT+AGG | 0.489495 | 3.2:-2920569 | None:intergenic |
| ATGGTGGCTAAACCACTCTA+TGG | 0.489848 | 3.2:+2918104 | MS.gene058403:CDS |
| GTATTCTGCTAATCTTCCTA+TGG | 0.490689 | 3.2:+2918085 | MS.gene058403:CDS |
| GTAAGCACTTCACGTGCAGC+AGG | 0.495854 | 3.2:-2919742 | None:intergenic |
| GTTGGATTGGCCTCTTTGCT+CGG | 0.508973 | 3.2:+2920600 | MS.gene058403:CDS |
| TGTACAAGTTGCAATATTGA+AGG | 0.509895 | 3.2:-2918062 | None:intergenic |
| ATCCTTTGCAACTTCAGTAA+TGG | 0.515704 | 3.2:-2919806 | None:intergenic |
| AGATTTAGAGTTGATGGTTG+TGG | 0.516019 | 3.2:-2920042 | None:intergenic |
| AATATGGAGCCCGTAAGCAT+TGG | 0.527587 | 3.2:-2920183 | None:intergenic |
| TAATGCATATAGGCGCGAAA+GGG | 0.528536 | 3.2:+2920812 | MS.gene058403:CDS |
| TAAATTCGGAATTCCAAATG+AGG | 0.534129 | 3.2:+2920410 | MS.gene058403:CDS |
| TTTGCGAACAGAACCGAGAA+AGG | 0.535403 | 3.2:-2920489 | None:intergenic |
| TTACTACCTTTAAGATGGAT+CGG | 0.535770 | 3.2:+2920684 | MS.gene058403:CDS |
| GATCCAACGATCCATAAAAG+TGG | 0.536954 | 3.2:-2920147 | None:intergenic |
| ATATAGGCGCGAAAGGGAAT+GGG | 0.537383 | 3.2:+2920818 | MS.gene058403:CDS |
| GCGCGTAGAAACAGAAGAGT+TGG | 0.537625 | 3.2:+2920768 | MS.gene058403:CDS |
| ATTACATCCGGTGATTACTC+AGG | 0.538427 | 3.2:+2920624 | MS.gene058403:CDS |
| AGAATCCCTTACATTATCAC+TGG | 0.541279 | 3.2:+2918164 | MS.gene058403:CDS |
| CGAACAGAACCGAGAAAGGA+AGG | 0.544556 | 3.2:-2920485 | None:intergenic |
| GCGTTCATGGCATTAGCCGC+AGG | 0.556853 | 3.2:+2919883 | MS.gene058403:CDS |
| GCTGTGCTTCTCAGTAACTT+GGG | 0.559091 | 3.2:+2919778 | MS.gene058403:CDS |
| TTTCCGATGAGAAACCTGAT+AGG | 0.566163 | 3.2:+2920321 | MS.gene058403:CDS |
| TTATGTCCGAAAGGCTGTGA+AGG | 0.568883 | 3.2:+2920513 | MS.gene058403:CDS |
| CAAAGCTGATGCAAGGAAAG+AGG | 0.571448 | 3.2:-2920544 | None:intergenic |
| ATCCATTACTGAAGTTGCAA+AGG | 0.575712 | 3.2:+2919804 | MS.gene058403:CDS |
| ATCATGAACATGATTCTTGG+AGG | 0.577392 | 3.2:-2919952 | None:intergenic |
| TTGGTTCGATTAATGCATAT+AGG | 0.577741 | 3.2:+2920802 | MS.gene058403:CDS |
| GGGAAGAAACACAAAATTGG+CGG | 0.578871 | 3.2:+2919847 | MS.gene058403:CDS |
| AATCTTGATCCTATGATCAT+CGG | 0.579039 | 3.2:+2920228 | MS.gene058403:CDS |
| TTAATGCATATAGGCGCGAA+AGG | 0.580820 | 3.2:+2920811 | MS.gene058403:CDS |
| ATGCTCTTGTAGCTGAGTAT+GGG | 0.582866 | 3.2:+2919827 | MS.gene058403:CDS |
| AATTTCTTTCTCAACAAGAG+AGG | 0.586622 | 3.2:+2920005 | MS.gene058403:CDS |
| TACCTCCAGTGATAATGTAA+GGG | 0.586765 | 3.2:-2918169 | None:intergenic |
| TCAGAAAGAATTCCATAGAG+TGG | 0.590482 | 3.2:-2918116 | None:intergenic |
| TCTTGCAACACAATCCATCT+CGG | 0.591171 | 3.2:+2920062 | MS.gene058403:CDS |
| GTACAAGTTGCAATATTGAA+GGG | 0.593637 | 3.2:-2918061 | None:intergenic |
| ATCCAACGATCCATAAAAGT+GGG | 0.595254 | 3.2:-2920146 | None:intergenic |
| TTCTGCTAATCTTCCTATGG+TGG | 0.599176 | 3.2:+2918088 | MS.gene058403:CDS |
| TTCATGGCATTAGCCGCAGG+TGG | 0.601108 | 3.2:+2919886 | MS.gene058403:CDS |
| GATTACTCAGGCTTGACTGT+GGG | 0.603520 | 3.2:+2920636 | MS.gene058403:CDS |
| ATCTTAGGCAACTTGATCGG+TGG | 0.604287 | 3.2:+2919910 | MS.gene058403:CDS |
| TTCGCAAATTTATGTCCGAA+AGG | 0.605242 | 3.2:+2920504 | MS.gene058403:CDS |
| GCCCGTAAGCATTGGAACAG+TGG | 0.605847 | 3.2:-2920175 | None:intergenic |
| ATAGGATCAAAGCTGATGCA+AGG | 0.610715 | 3.2:-2920551 | None:intergenic |
| GGAATCTTAGGCAACTTGAT+CGG | 0.615694 | 3.2:+2919907 | MS.gene058403:CDS |
| TTGATCCTATGATCATCGGT+TGG | 0.620203 | 3.2:+2920232 | MS.gene058403:CDS |
| ATCCCTTACATTATCACTGG+AGG | 0.623901 | 3.2:+2918167 | MS.gene058403:CDS |
| AGTCAAGCCTGAGTAATCAC+CGG | 0.627145 | 3.2:-2920631 | None:intergenic |
| TCTGCCAAACCCGAAAAGCA+AGG | 0.628364 | 3.2:-2920441 | None:intergenic |
| AAGCACAGCTGCAACTAAGA+CGG | 0.631279 | 3.2:-2919764 | None:intergenic |
| TAGAGTGGTTTAGCCACCAT+AGG | 0.639848 | 3.2:-2918101 | None:intergenic |
| GCGCCTATCAGGTTTCTCAT+CGG | 0.641117 | 3.2:-2920324 | None:intergenic |
| TGATTACTCAGGCTTGACTG+TGG | 0.648155 | 3.2:+2920635 | MS.gene058403:CDS |
| AAAGGGAATGGGAATCGCAA+AGG | 0.648256 | 3.2:+2920829 | MS.gene058403:CDS |
| GTTGCCTAAGATTCCACCTG+CGG | 0.660068 | 3.2:-2919899 | None:intergenic |
| TAAGCACTTCACGTGCAGCA+GGG | 0.681319 | 3.2:-2919741 | None:intergenic |
| GGATGTAATGCCGAGCAAAG+AGG | 0.684382 | 3.2:-2920610 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTTATAAAAAAAATCAA+TGG | - | chr3.2:2918653-2918672 | None:intergenic | 10.0% |
| !!! | GATTTTATTATCATCAATTT+TGG | + | chr3.2:2918744-2918763 | MS.gene058403:intron | 15.0% |
| !!! | TTTTAAGTTATTTTGTGTTT+AGG | + | chr3.2:2919159-2919178 | MS.gene058403:intron | 15.0% |
| !! | ACGAATATCAAGTTAAATAA+AGG | - | chr3.2:2919589-2919608 | None:intergenic | 20.0% |
| !! | AGACAGATAAATCTTAAATT+CGG | + | chr3.2:2920396-2920415 | MS.gene058403:CDS | 20.0% |
| !! | ATTTAACACATTAACAGAAA+AGG | - | chr3.2:2918220-2918239 | None:intergenic | 20.0% |
| !! | CTTTCTGATGTTATATATAT+TGG | + | chr3.2:2918131-2918150 | MS.gene058403:CDS | 20.0% |
| !! | GAAACCTTTATATTACATTA+GGG | + | chr3.2:2919069-2919088 | MS.gene058403:intron | 20.0% |
| !! | GTTATGAATAAAATTTACCT+TGG | + | chr3.2:2919482-2919501 | MS.gene058403:intron | 20.0% |
| !! | TGAAACCTTTATATTACATT+AGG | + | chr3.2:2919068-2919087 | MS.gene058403:intron | 20.0% |
| !!! | ACCAAATAAGTTTCATTTTA+TGG | - | chr3.2:2919670-2919689 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTTTAGGTATTAA+GGG | + | chr3.2:2919168-2919187 | MS.gene058403:intron | 20.0% |
| !!! | CCAAATAAGTTTCATTTTAT+GGG | - | chr3.2:2919669-2919688 | None:intergenic | 20.0% |
| !!! | GTAATATTTTTATTCAACCA+AGG | - | chr3.2:2919502-2919521 | None:intergenic | 20.0% |
| !!! | TATTTTGTGTTTAGGTATTA+AGG | + | chr3.2:2919167-2919186 | MS.gene058403:intron | 20.0% |
| !!! | TTACATTTTAATCTATGATG+AGG | + | chr3.2:2918269-2918288 | MS.gene058403:intron | 20.0% |
| !!! | TTGTATTTTCAATTTCTACA+CGG | + | chr3.2:2919432-2919451 | MS.gene058403:intron | 20.0% |
| ! | AAAAGACATTAAGAAATGCA+AGG | + | chr3.2:2919556-2919575 | MS.gene058403:intron | 25.0% |
| ! | AATATCATGAACATGATTCT+TGG | - | chr3.2:2919958-2919977 | None:intergenic | 25.0% |
| ! | AGAGTTATCTATCTTAATAC+CGG | - | chr3.2:2919374-2919393 | None:intergenic | 25.0% |
| ! | ATGTAATATAAAGGTTTCAG+AGG | - | chr3.2:2919067-2919086 | None:intergenic | 25.0% |
| ! | CCCATAAAATGAAACTTATT+TGG | + | chr3.2:2919666-2919685 | MS.gene058403:intron | 25.0% |
| ! | GTGTATTATAAGATTTCAAG+AGG | + | chr3.2:2919523-2919542 | MS.gene058403:intron | 25.0% |
| ! | TAGGAAATTGAGAAAATCAA+AGG | + | chr3.2:2918577-2918596 | MS.gene058403:intron | 25.0% |
| ! | TATTCATAACGAAATTGATC+TGG | - | chr3.2:2919472-2919491 | None:intergenic | 25.0% |
| ! | TCTGATGTTATATATATTGG+TGG | + | chr3.2:2918134-2918153 | MS.gene058403:CDS | 25.0% |
| ! | TGATATTGAGATGTAGATAT+TGG | + | chr3.2:2918418-2918437 | MS.gene058403:intron | 25.0% |
| !! | AAGAAAAAGTATGAGTAGAA+GGG | + | chr3.2:2920746-2920765 | MS.gene058403:CDS | 25.0% |
| AACTATCAAAAAACAAGCGT+CGG | + | chr3.2:2920086-2920105 | MS.gene058403:CDS | 30.0% | |
| AATCTTGATCCTATGATCAT+CGG | + | chr3.2:2920228-2920247 | MS.gene058403:CDS | 30.0% | |
| AATTTCTTTCTCAACAAGAG+AGG | + | chr3.2:2920005-2920024 | MS.gene058403:CDS | 30.0% | |
| ACACGATTCAGTGTAAATAT+AGG | + | chr3.2:2918347-2918366 | MS.gene058403:intron | 30.0% | |
| ACAGCCCTAATGTAATATAA+AGG | - | chr3.2:2919076-2919095 | None:intergenic | 30.0% | |
| ATCCAAACAAAAGGAATTAC+AGG | - | chr3.2:2919126-2919145 | None:intergenic | 30.0% | |
| ATCCTATCATCAATAGTTAG+TGG | + | chr3.2:2920567-2920586 | MS.gene058403:CDS | 30.0% | |
| GAGTTATCTATCTTAATACC+GGG | - | chr3.2:2919373-2919392 | None:intergenic | 30.0% | |
| GTACAAGTTGCAATATTGAA+GGG | - | chr3.2:2918064-2918083 | None:intergenic | 30.0% | |
| TAAATTCGGAATTCCAAATG+AGG | + | chr3.2:2920410-2920429 | MS.gene058403:CDS | 30.0% | |
| TAACATGTGGTATGTTCAAT+TGG | + | chr3.2:2919402-2919421 | MS.gene058403:intron | 30.0% | |
| TAACTGACACTTCAGATTAA+AGG | - | chr3.2:2918527-2918546 | None:intergenic | 30.0% | |
| TATGGGAAGAAACACAAAAT+TGG | + | chr3.2:2919844-2919863 | MS.gene058403:CDS | 30.0% | |
| TGAGATGTAGATATTGGTAA+TGG | + | chr3.2:2918424-2918443 | MS.gene058403:intron | 30.0% | |
| TGTACAAGTTGCAATATTGA+AGG | - | chr3.2:2918065-2918084 | None:intergenic | 30.0% | |
| TGTTTAGGTATTAAGGGAAA+GGG | + | chr3.2:2919174-2919193 | MS.gene058403:intron | 30.0% | |
| TTAGATAGATTAGTAGTCAC+TGG | - | chr3.2:2918879-2918898 | None:intergenic | 30.0% | |
| TTCAGTGTAAATATAGGTGT+CGG | + | chr3.2:2918353-2918372 | MS.gene058403:intron | 30.0% | |
| TTTGATATTGCGACAAAATG+CGG | + | chr3.2:2918999-2919018 | MS.gene058403:intron | 30.0% | |
| ! | CCAATATCGGTTATAAAGTA+CGG | - | chr3.2:2920295-2920314 | None:intergenic | 30.0% |
| ! | GAAGAAAAAGTATGAGTAGA+AGG | + | chr3.2:2920745-2920764 | MS.gene058403:CDS | 30.0% |
| ! | TTGGTTCGATTAATGCATAT+AGG | + | chr3.2:2920802-2920821 | MS.gene058403:CDS | 30.0% |
| !! | GTATTTCTTACCCACTTTTA+TGG | + | chr3.2:2920136-2920155 | MS.gene058403:CDS | 30.0% |
| !! | GTTACTTCTTGATCTTGTTT+TGG | + | chr3.2:2920371-2920390 | MS.gene058403:CDS | 30.0% |
| !! | TCGGAAACTTTTTCCAATAT+CGG | - | chr3.2:2920308-2920327 | None:intergenic | 30.0% |
| !! | TTACTACCTTTAAGATGGAT+CGG | + | chr3.2:2920684-2920703 | MS.gene058403:CDS | 30.0% |
| !!! | TCAATAGTTAGTGGCTTTTT+TGG | + | chr3.2:2920576-2920595 | MS.gene058403:CDS | 30.0% |
| !!! | TTTTTTGATAGTTTCCGAGA+TGG | - | chr3.2:2920079-2920098 | None:intergenic | 30.0% |
| !!! | TTTTTTTGCAGATCTTTGCT+TGG | + | chr3.2:2919701-2919720 | MS.gene058403:CDS | 30.0% |
| AAGGGAAAGGGAAAATACTT+GGG | + | chr3.2:2919186-2919205 | MS.gene058403:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | - | chr3.2:2919270-2919289 | None:intergenic | 35.0% | |
| AGAAAAGGCAAAAGCTATGT+GGG | - | chr3.2:2918205-2918224 | None:intergenic | 35.0% | |
| AGAATCCCTTACATTATCAC+TGG | + | chr3.2:2918164-2918183 | MS.gene058403:CDS | 35.0% | |
| AGACATTAAGAAATGCAAGG+TGG | + | chr3.2:2919559-2919578 | MS.gene058403:intron | 35.0% | |
| AGGTAACAACTCACAAGAAT+TGG | + | chr3.2:2918797-2918816 | MS.gene058403:intron | 35.0% | |
| ATCAGACTGATCCAAACAAA+AGG | - | chr3.2:2919135-2919154 | None:intergenic | 35.0% | |
| ATCATGAACATGATTCTTGG+AGG | - | chr3.2:2919955-2919974 | None:intergenic | 35.0% | |
| ATCCAACGATCCATAAAAGT+GGG | - | chr3.2:2920149-2920168 | None:intergenic | 35.0% | |
| ATCCATTACTGAAGTTGCAA+AGG | + | chr3.2:2919804-2919823 | MS.gene058403:CDS | 35.0% | |
| ATCCTTTGCAACTTCAGTAA+TGG | - | chr3.2:2919809-2919828 | None:intergenic | 35.0% | |
| ATTAAATCTTGGCCACACAA+AGG | + | chr3.2:2919229-2919248 | MS.gene058403:intron | 35.0% | |
| ATTGAACCGATCCATCTTAA+AGG | - | chr3.2:2920693-2920712 | None:intergenic | 35.0% | |
| CATAATCCATAATGCATGTG+TGG | + | chr3.2:2918929-2918948 | MS.gene058403:intron | 35.0% | |
| CCGTACTTTATAACCGATAT+TGG | + | chr3.2:2920292-2920311 | MS.gene058403:CDS | 35.0% | |
| CTGTGTCTGATAGCAAAATA+TGG | - | chr3.2:2920202-2920221 | None:intergenic | 35.0% | |
| GAAAGTGATTGAACGTAAAC+CGG | + | chr3.2:2918463-2918482 | MS.gene058403:intron | 35.0% | |
| GAACATACCACATGTTAACA+CGG | - | chr3.2:2919399-2919418 | None:intergenic | 35.0% | |
| GAGTGAATATCTCACTTTAG+TGG | + | chr3.2:2918698-2918717 | MS.gene058403:intron | 35.0% | |
| GCAAAGATCTGCAAAAAAAC+TGG | - | chr3.2:2919700-2919719 | None:intergenic | 35.0% | |
| GTATTCTGCTAATCTTCCTA+TGG | + | chr3.2:2918085-2918104 | MS.gene058403:CDS | 35.0% | |
| GTGTTTAGGTATTAAGGGAA+AGG | + | chr3.2:2919173-2919192 | MS.gene058403:intron | 35.0% | |
| GTTTAAACTCCTTCCTTTCT+CGG | + | chr3.2:2920476-2920495 | MS.gene058403:CDS | 35.0% | |
| TAAGGGAAAGGGAAAATACT+TGG | + | chr3.2:2919185-2919204 | MS.gene058403:intron | 35.0% | |
| TAATGCATGTGTGGTTAAGA+TGG | + | chr3.2:2918938-2918957 | MS.gene058403:intron | 35.0% | |
| TCAACAAGAGAGGATTCTTT+AGG | + | chr3.2:2920015-2920034 | MS.gene058403:CDS | 35.0% | |
| TCAGAAAGAATTCCATAGAG+TGG | - | chr3.2:2918119-2918138 | None:intergenic | 35.0% | |
| TCTTAACCACACATGCATTA+TGG | - | chr3.2:2918938-2918957 | None:intergenic | 35.0% | |
| TGCTAGTTGTACAGATAGTA+AGG | - | chr3.2:2919986-2920005 | None:intergenic | 35.0% | |
| TTCCTAACTACTCACTTTAG+AGG | - | chr3.2:2918563-2918582 | None:intergenic | 35.0% | |
| TTCGCAAATTTATGTCCGAA+AGG | + | chr3.2:2920504-2920523 | MS.gene058403:CDS | 35.0% | |
| ! | AGCCACTAACTATTGATGAT+AGG | - | chr3.2:2920572-2920591 | None:intergenic | 35.0% |
| ! | ATACCTCCAGTGATAATGTA+AGG | - | chr3.2:2918173-2918192 | None:intergenic | 35.0% |
| ! | CAGCTTTACTACCTTTAAGA+TGG | + | chr3.2:2920679-2920698 | MS.gene058403:CDS | 35.0% |
| ! | GTTGCAAGATTTAGAGTTGA+TGG | - | chr3.2:2920051-2920070 | None:intergenic | 35.0% |
| ! | TACCTCCAGTGATAATGTAA+GGG | - | chr3.2:2918172-2918191 | None:intergenic | 35.0% |
| !! | AGATTTAGAGTTGATGGTTG+TGG | - | chr3.2:2920045-2920064 | None:intergenic | 35.0% |
| !! | TCACAGCTTGTTACAGATAA+GGG | - | chr3.2:2918778-2918797 | None:intergenic | 35.0% |
| AACTGCAATTACGGCTGTAT+TGG | - | chr3.2:2919026-2919045 | None:intergenic | 40.0% | |
| AATGAAACACAGACACTCCT+CGG | - | chr3.2:2918394-2918413 | None:intergenic | 40.0% | |
| ACACATTGCCACATAACATC+TGG | - | chr3.2:2919298-2919317 | None:intergenic | 40.0% | |
| ACTCTTTCCGTGTTAACATG+TGG | + | chr3.2:2919389-2919408 | MS.gene058403:intron | 40.0% | |
| AGAGTTGGAAAAGTCGTGAT+TGG | + | chr3.2:2920783-2920802 | MS.gene058403:CDS | 40.0% | |
| ATAGGATCAAAGCTGATGCA+AGG | - | chr3.2:2920554-2920573 | None:intergenic | 40.0% | |
| ATCCCTTACATTATCACTGG+AGG | + | chr3.2:2918167-2918186 | MS.gene058403:CDS | 40.0% | |
| ATGCTCTTGTAGCTGAGTAT+GGG | + | chr3.2:2919827-2919846 | MS.gene058403:CDS | 40.0% | |
| ATTACATCCGGTGATTACTC+AGG | + | chr3.2:2920624-2920643 | MS.gene058403:CDS | 40.0% | |
| CACAACACATACAACACATC+TGG | - | chr3.2:2919271-2919290 | None:intergenic | 40.0% | |
| CACATTGCCACATAACATCT+GGG | - | chr3.2:2919297-2919316 | None:intergenic | 40.0% | |
| CAGAAAAGGCAAAAGCTATG+TGG | - | chr3.2:2918206-2918225 | None:intergenic | 40.0% | |
| CTGAAGTAGGTTATCAGTTG+CGG | - | chr3.2:2919102-2919121 | None:intergenic | 40.0% | |
| CTTATCTGTAACAAGCTGTG+AGG | + | chr3.2:2918777-2918796 | MS.gene058403:intron | 40.0% | |
| GAAAAGGCAAAAGCTATGTG+GGG | - | chr3.2:2918204-2918223 | None:intergenic | 40.0% | |
| GATCCAACGATCCATAAAAG+TGG | - | chr3.2:2920150-2920169 | None:intergenic | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | + | chr3.2:2919271-2919290 | MS.gene058403:intron | 40.0% | |
| GGAATCTTAGGCAACTTGAT+CGG | + | chr3.2:2919907-2919926 | MS.gene058403:CDS | 40.0% | |
| GGGAAGAAACACAAAATTGG+CGG | + | chr3.2:2919847-2919866 | MS.gene058403:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr3.2:2919237-2919218 | None:intergenic | 40.0% | |
| GTCACCGTGACATTAAATCT+TGG | + | chr3.2:2919218-2919237 | MS.gene058403:intron | 40.0% | |
| GTGGCCAAGATTTAATGTCA+CGG | - | chr3.2:2919225-2919244 | None:intergenic | 40.0% | |
| TAATGCATATAGGCGCGAAA+GGG | + | chr3.2:2920812-2920831 | MS.gene058403:CDS | 40.0% | |
| TCTGAATCAGACTGTGACAT+AGG | - | chr3.2:2920717-2920736 | None:intergenic | 40.0% | |
| TCTTGCAACACAATCCATCT+CGG | + | chr3.2:2920062-2920081 | MS.gene058403:CDS | 40.0% | |
| TGGCACAACAACTGCAATTA+CGG | - | chr3.2:2919035-2919054 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr3.2:2919236-2919217 | None:intergenic | 40.0% | |
| TTAATGCATATAGGCGCGAA+AGG | + | chr3.2:2920811-2920830 | MS.gene058403:CDS | 40.0% | |
| TTCTGCTAATCTTCCTATGG+TGG | + | chr3.2:2918088-2918107 | MS.gene058403:CDS | 40.0% | |
| TTGATCCTATGATCATCGGT+TGG | + | chr3.2:2920232-2920251 | MS.gene058403:CDS | 40.0% | |
| TTTCCGATGAGAAACCTGAT+AGG | + | chr3.2:2920321-2920340 | MS.gene058403:CDS | 40.0% | |
| ! | GGCCTGTAATTCCTTTTGTT+TGG | + | chr3.2:2919121-2919140 | MS.gene058403:intron | 40.0% |
| !! | AGCCTCTAAAGTGAGTAGTT+AGG | + | chr3.2:2918558-2918577 | MS.gene058403:intron | 40.0% |
| !! | ATGGTTCTAATTTGCAGCCA+CGG | + | chr3.2:2918957-2918976 | MS.gene058403:intron | 40.0% |
| !! | CTCACAGCTTGTTACAGATA+AGG | - | chr3.2:2918779-2918798 | None:intergenic | 40.0% |
| !! | TACCCACTTTTATGGATCGT+TGG | + | chr3.2:2920144-2920163 | MS.gene058403:CDS | 40.0% |
| !!! | GTTAGTGGCTTTTTTGGTGT+TGG | + | chr3.2:2920582-2920601 | MS.gene058403:CDS | 40.0% |
| !!! | TGGCTTTTTTGGTGTTGGAT+TGG | + | chr3.2:2920587-2920606 | MS.gene058403:CDS | 40.0% |
| AAACCGGTAACCACATGTGT+TGG | + | chr3.2:2918479-2918498 | MS.gene058403:intron | 45.0% | |
| AAAGGGAATGGGAATCGCAA+AGG | + | chr3.2:2920829-2920848 | MS.gene058403:CDS | 45.0% | |
| AAGCACAGCTGCAACTAAGA+CGG | - | chr3.2:2919767-2919786 | None:intergenic | 45.0% | |
| AATATGGAGCCCGTAAGCAT+TGG | - | chr3.2:2920186-2920205 | None:intergenic | 45.0% | |
| ACACCAACACATGTGGTTAC+CGG | - | chr3.2:2918485-2918504 | None:intergenic | 45.0% | |
| AGAGATCCTTCACAGCCTTT+CGG | - | chr3.2:2920522-2920541 | None:intergenic | 45.0% | |
| AGCTGTGCTTCTCAGTAACT+TGG | + | chr3.2:2919777-2919796 | MS.gene058403:CDS | 45.0% | |
| AGGAATTACAGGCCTGAAGT+AGG | - | chr3.2:2919115-2919134 | None:intergenic | 45.0% | |
| AGTCAAGCCTGAGTAATCAC+CGG | - | chr3.2:2920634-2920653 | None:intergenic | 45.0% | |
| ATATAGGCGCGAAAGGGAAT+GGG | + | chr3.2:2920818-2920837 | MS.gene058403:CDS | 45.0% | |
| ATCTTAGGCAACTTGATCGG+TGG | + | chr3.2:2919910-2919929 | MS.gene058403:CDS | 45.0% | |
| ATGGTGGCTAAACCACTCTA+TGG | + | chr3.2:2918104-2918123 | MS.gene058403:CDS | 45.0% | |
| ATGTGGCAATGTGTGTTGTG+TGG | + | chr3.2:2919304-2919323 | MS.gene058403:intron | 45.0% | |
| CAAAGCTGATGCAAGGAAAG+AGG | - | chr3.2:2920547-2920566 | None:intergenic | 45.0% | |
| CACAACACAACACCTTTGTG+TGG | - | chr3.2:2919244-2919263 | None:intergenic | 45.0% | |
| CCATGAACGCGTATGATTGT+AGG | - | chr3.2:2919873-2919892 | None:intergenic | 45.0% | |
| CCTACAATCATACGCGTTCA+TGG | + | chr3.2:2919870-2919889 | MS.gene058403:CDS | 45.0% | |
| CGCAACTGATAACCTACTTC+AGG | + | chr3.2:2919100-2919119 | MS.gene058403:intron | 45.0% | |
| CTAGACCAACCGATGATCAT+AGG | - | chr3.2:2920240-2920259 | None:intergenic | 45.0% | |
| GAAGTAACGACGAAGCGTAT+AGG | - | chr3.2:2920359-2920378 | None:intergenic | 45.0% | |
| GATGCTCTTGTAGCTGAGTA+TGG | + | chr3.2:2919826-2919845 | MS.gene058403:CDS | 45.0% | |
| GATTACTCAGGCTTGACTGT+GGG | + | chr3.2:2920636-2920655 | MS.gene058403:CDS | 45.0% | |
| GCTGTGCTTCTCAGTAACTT+GGG | + | chr3.2:2919778-2919797 | MS.gene058403:CDS | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr3.2:2919323-2919342 | MS.gene058403:intron | 45.0% | |
| TAGAGTGGTTTAGCCACCAT+AGG | - | chr3.2:2918104-2918123 | None:intergenic | 45.0% | |
| TCTTTGCTCGGCATTACATC+CGG | + | chr3.2:2920612-2920631 | MS.gene058403:CDS | 45.0% | |
| TGATTACTCAGGCTTGACTG+TGG | + | chr3.2:2920635-2920654 | MS.gene058403:CDS | 45.0% | |
| TGCCACTGTTCCAATGCTTA+CGG | + | chr3.2:2920173-2920192 | MS.gene058403:CDS | 45.0% | |
| TTATGTCCGAAAGGCTGTGA+AGG | + | chr3.2:2920513-2920532 | MS.gene058403:CDS | 45.0% | |
| TTTGCGAACAGAACCGAGAA+AGG | - | chr3.2:2920492-2920511 | None:intergenic | 45.0% | |
| ! | GGTCAGTTGATGCTTCTTTC+AGG | + | chr3.2:2920267-2920286 | MS.gene058403:CDS | 45.0% |
| !! | ATCGGTTGGTCTAGAGTGAT+TGG | + | chr3.2:2920246-2920265 | MS.gene058403:CDS | 45.0% |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | + | chr3.2:2919244-2919263 | MS.gene058403:intron | 45.0% |
| !! | CACATGTGTTGGTGTTGTGT+CGG | + | chr3.2:2918490-2918509 | MS.gene058403:intron | 45.0% |
| !! | CTTAATACCGGGAAGCACTT+GGG | - | chr3.2:2919362-2919381 | None:intergenic | 45.0% |
| !! | TAGTAGTCACTGGCTTTGCT+TGG | - | chr3.2:2918869-2918888 | None:intergenic | 45.0% |
| !! | TCTTAATACCGGGAAGCACT+TGG | - | chr3.2:2919363-2919382 | None:intergenic | 45.0% |
| !!! | ACAAGCGTCGGATCTTTTTG+TGG | + | chr3.2:2920098-2920117 | MS.gene058403:CDS | 45.0% |
| CAAGGAGCGAACACCTCATT+TGG | - | chr3.2:2920426-2920445 | None:intergenic | 50.0% | |
| CATATAGGCGCGAAAGGGAA+TGG | + | chr3.2:2920817-2920836 | MS.gene058403:CDS | 50.0% | |
| CGAACAGAACCGAGAAAGGA+AGG | - | chr3.2:2920488-2920507 | None:intergenic | 50.0% | |
| CGACACAACACCAACACATG+TGG | - | chr3.2:2918492-2918511 | None:intergenic | 50.0% | |
| GATGAGGCACGTATACGACA+TGG | + | chr3.2:2918285-2918304 | MS.gene058403:intron | 50.0% | |
| GCCACTGTTCCAATGCTTAC+GGG | + | chr3.2:2920174-2920193 | MS.gene058403:CDS | 50.0% | |
| GCGCCTATCAGGTTTCTCAT+CGG | - | chr3.2:2920327-2920346 | None:intergenic | 50.0% | |
| GCGCGTAGAAACAGAAGAGT+TGG | + | chr3.2:2920768-2920787 | MS.gene058403:CDS | 50.0% | |
| GGATGTAATGCCGAGCAAAG+AGG | - | chr3.2:2920613-2920632 | None:intergenic | 50.0% | |
| GGTTTCAGAGGTCACTACGA+TGG | - | chr3.2:2919055-2919074 | None:intergenic | 50.0% | |
| GTTGCCTAAGATTCCACCTG+CGG | - | chr3.2:2919902-2919921 | None:intergenic | 50.0% | |
| TAAGCACTTCACGTGCAGCA+GGG | - | chr3.2:2919744-2919763 | None:intergenic | 50.0% | |
| TATGTCACCCAAGTGCTTCC+CGG | + | chr3.2:2919352-2919371 | MS.gene058403:intron | 50.0% | |
| TCTGCCAAACCCGAAAAGCA+AGG | - | chr3.2:2920444-2920463 | None:intergenic | 50.0% | |
| TGTGTGGCCCAGATGTTATG+TGG | + | chr3.2:2919287-2919306 | MS.gene058403:intron | 50.0% | |
| TTAGCCGCAGGTGGAATCTT+AGG | + | chr3.2:2919895-2919914 | MS.gene058403:CDS | 50.0% | |
| ! | CTAATTTGCAGCCACGGTTG+CGG | + | chr3.2:2918963-2918982 | MS.gene058403:intron | 50.0% |
| !! | ATATAGGTGTCGGTGTCGTG+TGG | + | chr3.2:2918363-2918382 | MS.gene058403:intron | 50.0% |
| !! | GGTGTTCGCTCCTTGCTTTT+CGG | + | chr3.2:2920431-2920450 | MS.gene058403:CDS | 50.0% |
| !! | GTGTTCGCTCCTTGCTTTTC+GGG | + | chr3.2:2920432-2920451 | MS.gene058403:CDS | 50.0% |
| !! | GTTGGATTGGCCTCTTTGCT+CGG | + | chr3.2:2920600-2920619 | MS.gene058403:CDS | 50.0% |
| GTAAGCACTTCACGTGCAGC+AGG | - | chr3.2:2919745-2919764 | None:intergenic | 55.0% | |
| TTCATGGCATTAGCCGCAGG+TGG | + | chr3.2:2919886-2919905 | MS.gene058403:CDS | 55.0% | |
| !! | GCCCGTAAGCATTGGAACAG+TGG | - | chr3.2:2920178-2920197 | None:intergenic | 55.0% |
| !!! | CGCTCCTTGCTTTTCGGGTT+TGG | + | chr3.2:2920437-2920456 | MS.gene058403:CDS | 55.0% |
| GCGTTCATGGCATTAGCCGC+AGG | + | chr3.2:2919883-2919902 | MS.gene058403:CDS | 60.0% | |
| GGATCTGCACTGCGCCTATC+AGG | - | chr3.2:2920338-2920357 | None:intergenic | 60.0% | |
| TCGCAGCATAACCGCAACCG+TGG | - | chr3.2:2918977-2918996 | None:intergenic | 60.0% | |
| ! | GGTGTCGTGTGGCTAATCCG+AGG | + | chr3.2:2918374-2918393 | MS.gene058403:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2918038 | 2920854 | 2918038 | ID=MS.gene058403 |
| chr3.2 | mRNA | 2918038 | 2920854 | 2918038 | ID=MS.gene058403.t1;Parent=MS.gene058403 |
| chr3.2 | exon | 2918038 | 2918188 | 2918038 | ID=MS.gene058403.t1.exon1;Parent=MS.gene058403.t1 |
| chr3.2 | CDS | 2918038 | 2918188 | 2918038 | ID=cds.MS.gene058403.t1;Parent=MS.gene058403.t1 |
| chr3.2 | exon | 2919701 | 2920854 | 2919701 | ID=MS.gene058403.t1.exon2;Parent=MS.gene058403.t1 |
| chr3.2 | CDS | 2919701 | 2920854 | 2919701 | ID=cds.MS.gene058403.t1;Parent=MS.gene058403.t1 |
| Gene Sequence |
| Protein sequence |
