Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56231.t1 | XP_003598212.1 | 97.8 | 371 | 8 | 0 | 1 | 371 | 1 | 371 | 2.40E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56231.t1 | Q9SUW0 | 67.1 | 331 | 108 | 1 | 41 | 371 | 27 | 356 | 3.1e-124 | 446.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56231.t1 | G7IYG6 | 97.8 | 371 | 8 | 0 | 1 | 371 | 1 | 371 | 1.7e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058404 | MS.gene56231 | 0.883499 | 4.26E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56231.t1 | MTR_3g008500 | 97.844 | 371 | 8 | 0 | 1 | 371 | 1 | 371 | 0.0 | 751 |
| MS.gene56231.t1 | MTR_4g036090 | 73.262 | 374 | 90 | 4 | 1 | 371 | 1 | 367 | 0.0 | 546 |
| MS.gene56231.t1 | MTR_4g036090 | 73.262 | 374 | 90 | 4 | 1 | 371 | 1 | 367 | 0.0 | 543 |
| MS.gene56231.t1 | MTR_4g101600 | 60.963 | 374 | 138 | 5 | 1 | 371 | 1 | 369 | 7.15e-156 | 444 |
| MS.gene56231.t1 | MTR_8g090330 | 52.450 | 347 | 146 | 4 | 25 | 371 | 17 | 344 | 2.67e-122 | 358 |
| MS.gene56231.t1 | MTR_3g074180 | 55.238 | 315 | 119 | 4 | 58 | 371 | 53 | 346 | 5.29e-119 | 350 |
| MS.gene56231.t1 | MTR_5g063080 | 52.484 | 322 | 132 | 4 | 62 | 382 | 69 | 370 | 1.85e-112 | 333 |
| MS.gene56231.t1 | MTR_3g091010 | 54.804 | 281 | 120 | 4 | 95 | 371 | 64 | 341 | 5.98e-106 | 316 |
| MS.gene56231.t1 | MTR_8g027765 | 51.399 | 286 | 138 | 1 | 95 | 379 | 20 | 305 | 4.99e-103 | 307 |
| MS.gene56231.t1 | MTR_8g090330 | 51.536 | 293 | 123 | 4 | 25 | 317 | 17 | 290 | 6.73e-97 | 291 |
| MS.gene56231.t1 | MTR_4g036685 | 59.041 | 271 | 82 | 10 | 70 | 327 | 1 | 255 | 4.74e-89 | 270 |
| MS.gene56231.t1 | MTR_4g128870 | 43.220 | 118 | 36 | 4 | 120 | 237 | 6 | 92 | 8.19e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56231.t1 | AT4G22590 | 62.264 | 371 | 125 | 2 | 1 | 371 | 1 | 356 | 1.58e-160 | 456 |
| MS.gene56231.t1 | AT5G51460 | 59.259 | 378 | 137 | 6 | 1 | 371 | 1 | 368 | 3.59e-156 | 445 |
| MS.gene56231.t1 | AT5G51460 | 59.259 | 378 | 137 | 6 | 1 | 371 | 1 | 368 | 3.59e-156 | 445 |
| MS.gene56231.t1 | AT5G51460 | 59.103 | 379 | 137 | 7 | 1 | 371 | 1 | 369 | 1.92e-154 | 440 |
| MS.gene56231.t1 | AT5G51460 | 59.103 | 379 | 137 | 7 | 1 | 371 | 1 | 369 | 1.92e-154 | 440 |
| MS.gene56231.t1 | AT5G51460 | 59.103 | 379 | 137 | 7 | 1 | 371 | 1 | 369 | 1.92e-154 | 440 |
| MS.gene56231.t1 | AT4G12430 | 62.264 | 371 | 116 | 4 | 1 | 371 | 1 | 347 | 1.48e-151 | 432 |
| MS.gene56231.t1 | AT1G35910 | 55.723 | 332 | 129 | 4 | 45 | 371 | 32 | 350 | 2.27e-123 | 361 |
| MS.gene56231.t1 | AT4G39770 | 57.143 | 308 | 111 | 2 | 64 | 371 | 45 | 331 | 1.31e-117 | 345 |
| MS.gene56231.t1 | AT4G39770 | 57.143 | 308 | 111 | 2 | 64 | 371 | 45 | 331 | 2.24e-117 | 345 |
| MS.gene56231.t1 | AT5G10100 | 53.016 | 315 | 130 | 3 | 62 | 375 | 58 | 355 | 6.27e-115 | 339 |
| MS.gene56231.t1 | AT1G78090 | 50.284 | 352 | 145 | 7 | 31 | 371 | 23 | 355 | 1.02e-114 | 338 |
| MS.gene56231.t1 | AT1G78090 | 50.284 | 352 | 145 | 7 | 31 | 371 | 23 | 355 | 2.15e-114 | 338 |
| MS.gene56231.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 3.29e-114 | 337 |
| MS.gene56231.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 69 | 362 | 3.55e-114 | 338 |
| MS.gene56231.t1 | AT5G65140 | 48.378 | 370 | 162 | 5 | 22 | 380 | 11 | 362 | 4.52e-113 | 335 |
| MS.gene56231.t1 | AT2G22190 | 54.516 | 310 | 115 | 3 | 66 | 373 | 55 | 340 | 2.55e-111 | 330 |
| MS.gene56231.t1 | AT2G22190 | 54.575 | 306 | 115 | 2 | 66 | 371 | 55 | 336 | 9.30e-111 | 328 |
| MS.gene56231.t1 | AT1G22210 | 54.426 | 305 | 123 | 2 | 67 | 371 | 14 | 302 | 3.89e-110 | 325 |
| MS.gene56231.t1 | AT5G65140 | 48.338 | 331 | 143 | 4 | 22 | 341 | 11 | 324 | 8.02e-102 | 305 |
| MS.gene56231.t1 | AT5G10100 | 49.839 | 311 | 118 | 4 | 62 | 371 | 69 | 342 | 8.65e-100 | 300 |
| MS.gene56231.t1 | AT5G65140 | 52.344 | 256 | 105 | 2 | 62 | 317 | 62 | 300 | 9.28e-89 | 271 |
Find 79 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGTTAATCGTAAATT+TGG | 0.145955 | 3.3:-4263684 | None:intergenic |
| GACCGATGAAGACGCATTTA+AGG | 0.192103 | 3.3:+4264074 | MS.gene56231:CDS |
| CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3.3:+4261960 | MS.gene56231:CDS |
| AGTGAGGTTAATAAAGGTTT+TGG | 0.252937 | 3.3:+4264204 | MS.gene56231:CDS |
| AAACCGCGTTGCTTTCTTTA+GGG | 0.291548 | 3.3:-4264245 | None:intergenic |
| TCGGTAGACCTAATGCAATT+AGG | 0.323769 | 3.3:-4262918 | None:intergenic |
| TACTCACAAGAAAATATCTA+TGG | 0.331294 | 3.3:+4262013 | MS.gene56231:CDS |
| TAAACCGCGTTGCTTTCTTT+AGG | 0.331760 | 3.3:-4264246 | None:intergenic |
| AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3.3:+4262864 | MS.gene56231:CDS |
| GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3.3:-4261794 | None:intergenic |
| CTAGAGTTTCCCTCAGCAAC+TGG | 0.353880 | 3.3:+4262189 | MS.gene56231:CDS |
| AGGTTCGACCGGTGATTGAC+TGG | 0.361618 | 3.3:+4263865 | MS.gene56231:CDS |
| TAATGTACAGAGTTGGGATT+TGG | 0.368930 | 3.3:+4263626 | MS.gene56231:intron |
| CGGTAGACCTAATGCAATTA+GGG | 0.375663 | 3.3:-4262917 | None:intergenic |
| ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3.3:+4262910 | MS.gene56231:CDS |
| AAGAAAATATCTATGGATAT+TGG | 0.399008 | 3.3:+4262020 | MS.gene56231:CDS |
| CGCTCAGGATTGTCGACAAT+TGG | 0.399987 | 3.3:-4262288 | None:intergenic |
| ACCGGTGATTGACTGGGATA+AGG | 0.409395 | 3.3:+4263872 | MS.gene56231:CDS |
| ACAATTCCACGGAAGAAGAT+AGG | 0.410826 | 3.3:+4261933 | MS.gene56231:CDS |
| CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3.3:+4262816 | MS.gene56231:intron |
| CCTTGATCTTGTCCTCGTTA+AGG | 0.420181 | 3.3:-4261835 | None:intergenic |
| TAAAACTGGTACCTTCTTAT+CGG | 0.421696 | 3.3:-4262937 | None:intergenic |
| TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3.3:-4261786 | None:intergenic |
| AGAAAAGTTGAAGTATTTGT+CGG | 0.453164 | 3.3:-4261894 | None:intergenic |
| TGCTGCTTATTTAACCTGGC+TGG | 0.454459 | 3.3:+4262070 | MS.gene56231:CDS |
| CCGGTGATTGACTGGGATAA+GGG | 0.455503 | 3.3:+4263873 | MS.gene56231:CDS |
| ATGCATACCTCATCAATCAT+AGG | 0.460691 | 3.3:-4263087 | None:intergenic |
| CAGGATATTACATACGTTGT+CGG | 0.464014 | 3.3:-4262322 | None:intergenic |
| TTAACAGATCTTCATTATGC+TGG | 0.467705 | 3.3:+4262840 | MS.gene56231:CDS |
| CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3.3:+4262222 | MS.gene56231:CDS |
| CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3.3:+4262066 | MS.gene56231:CDS |
| ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3.3:+4261964 | MS.gene56231:CDS |
| CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3.3:+4262256 | MS.gene56231:CDS |
| CTTCATTATGCTGGTAGTCA+TGG | 0.492396 | 3.3:+4262849 | MS.gene56231:CDS |
| AACCGCGTTGCTTTCTTTAG+GGG | 0.494436 | 3.3:-4264244 | None:intergenic |
| TTCCGTGGAATTGTTAGCGA+TGG | 0.496157 | 3.3:-4261924 | None:intergenic |
| CCCTTATCCCAGTCAATCAC+CGG | 0.500521 | 3.3:-4263873 | None:intergenic |
| GGAGAGCATGACAGACTTGA+AGG | 0.505126 | 3.3:-4261873 | None:intergenic |
| ACAAGATCAAGGCTCGGTGC+AGG | 0.507337 | 3.3:+4261846 | MS.gene56231:CDS |
| AAGGTTAGTAATTTGTTCAA+AGG | 0.511038 | 3.3:-4262214 | None:intergenic |
| TTTCCGACTGCAATAATTAG+CGG | 0.519792 | 3.3:+4262475 | MS.gene56231:CDS |
| AACCTTAAATGCGTCTTCAT+CGG | 0.525404 | 3.3:-4264076 | None:intergenic |
| TCAGATATAGACTGTCTAAG+AGG | 0.526026 | 3.3:-4262888 | None:intergenic |
| TGTACAGAGTTGGGATTTGG+TGG | 0.528879 | 3.3:+4263629 | MS.gene56231:intron |
| TAGCGGAAGAAGTCGTGAAA+AGG | 0.529643 | 3.3:+4262492 | MS.gene56231:CDS |
| CATTAGGTCTACCGATAAGA+AGG | 0.533743 | 3.3:+4262926 | MS.gene56231:CDS |
| TTCAAAGGCCCCAGTTGCTG+AGG | 0.545026 | 3.3:-4262199 | None:intergenic |
| TCGGACATGAAAGCACGCTC+AGG | 0.550059 | 3.3:-4262303 | None:intergenic |
| TAGAGTTTCCCTCAGCAACT+GGG | 0.550994 | 3.3:+4262190 | MS.gene56231:CDS |
| GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3.3:+4264042 | MS.gene56231:CDS |
| CTTCCGCTAATTATTGCAGT+CGG | 0.556782 | 3.3:-4262478 | None:intergenic |
| ACCATAAGAATTACCTCTGA+AGG | 0.557104 | 3.3:-4264282 | None:intergenic |
| CTCTCTGTGTGATCCTTCAG+AGG | 0.560782 | 3.3:+4264269 | MS.gene56231:CDS |
| TTATGCTGGTAGTCATGGAA+TGG | 0.563818 | 3.3:+4262854 | MS.gene56231:CDS |
| CCTTAACGAGGACAAGATCA+AGG | 0.576103 | 3.3:+4261835 | MS.gene56231:CDS |
| GCAGGAATTCAGCAGCAGGT+TGG | 0.579369 | 3.3:-4263065 | None:intergenic |
| CCAAATTTACGATTAACTCA+TGG | 0.579608 | 3.3:+4263684 | MS.gene56231:CDS |
| ATACCTCATCAATCATAGGC+AGG | 0.580942 | 3.3:-4263083 | None:intergenic |
| ATATCTATGGATATTGGTCA+TGG | 0.583838 | 3.3:+4262026 | MS.gene56231:CDS |
| ATAGGCAGGAATTCAGCAGC+AGG | 0.587802 | 3.3:-4263069 | None:intergenic |
| CTATATATATTGGTGACGAT+CGG | 0.591664 | 3.3:+4264052 | MS.gene56231:CDS |
| CGCGTTGCTTTCTTTAGGGG+CGG | 0.594578 | 3.3:-4264241 | None:intergenic |
| GGTTCGACCGGTGATTGACT+GGG | 0.599893 | 3.3:+4263866 | MS.gene56231:CDS |
| TCAAAGGCCCCAGTTGCTGA+GGG | 0.603038 | 3.3:-4262198 | None:intergenic |
| AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3.3:-4261939 | None:intergenic |
| GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3.3:+4262255 | MS.gene56231:CDS |
| GTCCATCGCTAACAATTCCA+CGG | 0.612604 | 3.3:+4261922 | MS.gene56231:CDS |
| ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3.3:+4263692 | MS.gene56231:CDS |
| GTATGTGTTTCATACCAGCC+AGG | 0.620718 | 3.3:-4262084 | None:intergenic |
| ATTTACGATTAACTCATGGT+CGG | 0.632995 | 3.3:+4263688 | MS.gene56231:CDS |
| AGAGTTTCCCTCAGCAACTG+GGG | 0.635565 | 3.3:+4262191 | MS.gene56231:CDS |
| CTGATACTGCAACCTTAACG+AGG | 0.654522 | 3.3:+4261823 | MS.gene56231:CDS |
| ATTCCTGCCTATGATTGATG+AGG | 0.658507 | 3.3:+4263080 | MS.gene56231:CDS |
| ACGAGGACAAGATCAAGGCT+CGG | 0.658800 | 3.3:+4261840 | MS.gene56231:CDS |
| GAGTGTACAAAAGACATCAA+AGG | 0.661986 | 3.3:+4263390 | MS.gene56231:CDS |
| ACATTATCGTAATGTAGACG+AGG | 0.705017 | 3.3:+4263449 | MS.gene56231:CDS |
| TTATCGTAATGTAGACGAGG+AGG | 0.716669 | 3.3:+4263452 | MS.gene56231:CDS |
| GTTGCAGTATCAGCAATGCG+AGG | 0.729280 | 3.3:-4261813 | None:intergenic |
| CGCCCCTAAAGAAAGCAACG+CGG | 0.751129 | 3.3:+4264242 | MS.gene56231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAACTGATATAAAA+TGG | + | chr3.3:4264165-4264184 | MS.gene56231:intron | 10.0% |
| !! | AGAAGATTATAAATCAATAT+AGG | - | chr3.3:4263015-4263034 | None:intergenic | 15.0% |
| !! | GAAGATTATAAATCAATATA+GGG | - | chr3.3:4263014-4263033 | None:intergenic | 15.0% |
| !! | TATATCAGTTATATAAAGTA+AGG | - | chr3.3:4264162-4264181 | None:intergenic | 15.0% |
| !!! | AAACAAATTTTTTATACAAG+AGG | - | chr3.3:4263515-4263534 | None:intergenic | 15.0% |
| !!! | AACAAATTTTTTATACAAGA+GGG | - | chr3.3:4263514-4263533 | None:intergenic | 15.0% |
| !!! | AATCTAGAATAAAAATTGAT+AGG | - | chr3.3:4263146-4263165 | None:intergenic | 15.0% |
| !!! | TATAATCTTCTAAAATTACA+GGG | + | chr3.3:4263024-4263043 | MS.gene56231:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr3.3:4263263-4263282 | MS.gene56231:intron | 15.0% |
| !!! | TTATAATCTTCTAAAATTAC+AGG | + | chr3.3:4263023-4263042 | MS.gene56231:intron | 15.0% |
| !!! | TTTTATTCTAGATTGAAATA+CGG | + | chr3.3:4263152-4263171 | MS.gene56231:intron | 15.0% |
| !! | AAGAAAATATCTATGGATAT+TGG | + | chr3.3:4262020-4262039 | MS.gene56231:CDS | 20.0% |
| !! | TAAAATGAGTAGAAAAGTTT+AGG | - | chr3.3:4263736-4263755 | None:intergenic | 20.0% |
| !! | TGAAAATGAAACTAAATAAG+AGG | - | chr3.3:4263604-4263623 | None:intergenic | 20.0% |
| !!! | GTTAGTTTGTTGATTATTAA+TGG | + | chr3.3:4263932-4263951 | MS.gene56231:intron | 20.0% |
| !!! | TCTAAAAGTATCTTTTGAAA+GGG | + | chr3.3:4262987-4263006 | MS.gene56231:intron | 20.0% |
| !!! | TTCTAAAAGTATCTTTTGAA+AGG | + | chr3.3:4262986-4263005 | MS.gene56231:intron | 20.0% |
| !!! | TTTTTACAAGAAAAATGTTG+CGG | - | chr3.3:4262749-4262768 | None:intergenic | 20.0% |
| ! | AACAGATATGTCTCTTAAAA+AGG | - | chr3.3:4263800-4263819 | None:intergenic | 25.0% |
| ! | ACAAGAGAAGAAAAATAATC+AGG | - | chr3.3:4262385-4262404 | None:intergenic | 25.0% |
| ! | ACTTATCACATATTTCATCA+TGG | + | chr3.3:4263564-4263583 | MS.gene56231:intron | 25.0% |
| ! | AGCTGCAAAAATTACAAAAA+AGG | - | chr3.3:4262171-4262190 | None:intergenic | 25.0% |
| ! | ATTAAATAAAGTGACACTGA+TGG | - | chr3.3:4262711-4262730 | None:intergenic | 25.0% |
| ! | ATTTACAATTCTCTATATGC+AGG | - | chr3.3:4262590-4262609 | None:intergenic | 25.0% |
| ! | GTAAAAAAAATGTTCGTGTT+AGG | + | chr3.3:4262762-4262781 | MS.gene56231:intron | 25.0% |
| ! | TACAAAAAAGGAAACGAATA+AGG | - | chr3.3:4262159-4262178 | None:intergenic | 25.0% |
| ! | TACTCACAAGAAAATATCTA+TGG | + | chr3.3:4262013-4262032 | MS.gene56231:CDS | 25.0% |
| ! | TGATGAAATATGTGATAAGT+TGG | - | chr3.3:4263564-4263583 | None:intergenic | 25.0% |
| ! | TTCATATAATGTACAGAGTT+GGG | + | chr3.3:4263620-4263639 | MS.gene56231:intron | 25.0% |
| ! | TTGAATGTAAATACATCTGT+CGG | - | chr3.3:4263238-4263257 | None:intergenic | 25.0% |
| ! | TTTCATATAATGTACAGAGT+TGG | + | chr3.3:4263619-4263638 | MS.gene56231:intron | 25.0% |
| !! | AGAAAAGTTGAAGTATTTGT+CGG | - | chr3.3:4261897-4261916 | None:intergenic | 25.0% |
| !! | ATAGATATTTTCTTGTGAGT+AGG | - | chr3.3:4262014-4262033 | None:intergenic | 25.0% |
| !!! | AAGGTTAGTAATTTGTTCAA+AGG | - | chr3.3:4262217-4262236 | None:intergenic | 25.0% |
| AAGCCTTTGATATGAAGTTT+CGG | - | chr3.3:4263200-4263219 | None:intergenic | 30.0% | |
| ATAATCACCCTAATTGCATT+AGG | + | chr3.3:4262910-4262929 | MS.gene56231:CDS | 30.0% | |
| ATATCTATGGATATTGGTCA+TGG | + | chr3.3:4262026-4262045 | MS.gene56231:CDS | 30.0% | |
| ATTTACGATTAACTCATGGT+CGG | + | chr3.3:4263688-4263707 | MS.gene56231:CDS | 30.0% | |
| CAAATTACTAACCTTGCAAA+AGG | + | chr3.3:4262222-4262241 | MS.gene56231:CDS | 30.0% | |
| CCAAATTTACGATTAACTCA+TGG | + | chr3.3:4263684-4263703 | MS.gene56231:CDS | 30.0% | |
| CCATGAGTTAATCGTAAATT+TGG | - | chr3.3:4263687-4263706 | None:intergenic | 30.0% | |
| GAACATAAACGACTAAAGTT+TGG | - | chr3.3:4263778-4263797 | None:intergenic | 30.0% | |
| GATGTGCTAGCTATATATAT+TGG | + | chr3.3:4264042-4264061 | MS.gene56231:CDS | 30.0% | |
| TAAAACTGGTACCTTCTTAT+CGG | - | chr3.3:4262940-4262959 | None:intergenic | 30.0% | |
| TATGTTTACCGATAATGTTC+AGG | + | chr3.3:4263836-4263855 | MS.gene56231:intron | 30.0% | |
| TTAACAGATCTTCATTATGC+TGG | + | chr3.3:4262840-4262859 | MS.gene56231:CDS | 30.0% | |
| TTCATGTACCTGAAGAAATA+AGG | - | chr3.3:4262811-4262830 | None:intergenic | 30.0% | |
| ! | AATACTTCAACTTTTCTGCA+TGG | + | chr3.3:4261900-4261919 | MS.gene56231:CDS | 30.0% |
| ! | ACGCGTTTTTGATATTATGA+AGG | + | chr3.3:4263656-4263675 | MS.gene56231:CDS | 30.0% |
| ! | AGTGAAGTAAGATCTAAAAC+TGG | - | chr3.3:4262954-4262973 | None:intergenic | 30.0% |
| ! | AGTGAGGTTAATAAAGGTTT+TGG | + | chr3.3:4264204-4264223 | MS.gene56231:CDS | 30.0% |
| ! | CATTGTTTCTTGATTACGAT+GGG | + | chr3.3:4262256-4262275 | MS.gene56231:CDS | 30.0% |
| ! | GCAATTTTGTACATTTGCTT+TGG | + | chr3.3:4264335-4264354 | MS.gene56231:CDS | 30.0% |
| ! | TTTGATGTCTTTTGTACACT+CGG | - | chr3.3:4263391-4263410 | None:intergenic | 30.0% |
| !! | CTATATATATTGGTGACGAT+CGG | + | chr3.3:4264052-4264071 | MS.gene56231:CDS | 30.0% |
| !! | CTCTAAAACCTGAACATTAT+CGG | - | chr3.3:4263847-4263866 | None:intergenic | 30.0% |
| !! | GATATAAAATGGACTGTAAC+AGG | + | chr3.3:4264176-4264195 | MS.gene56231:intron | 30.0% |
| !! | GGTTAGTTTATGTGTATTCA+AGG | + | chr3.3:4263953-4263972 | MS.gene56231:intron | 30.0% |
| !! | GTTTTGAGTGAGGTTAATAA+AGG | + | chr3.3:4264198-4264217 | MS.gene56231:CDS | 30.0% |
| !! | TACCTCTATGTAATTTGTTG+CGG | + | chr3.3:4262113-4262132 | MS.gene56231:intron | 30.0% |
| !! | TCTTCTAAAATTACAGGGTA+AGG | + | chr3.3:4263029-4263048 | MS.gene56231:intron | 30.0% |
| AACCTTAAATGCGTCTTCAT+CGG | - | chr3.3:4264079-4264098 | None:intergenic | 35.0% | |
| AAGAAAAATGTTGCGGAAGA+GGG | - | chr3.3:4262742-4262761 | None:intergenic | 35.0% | |
| ACATTATCGTAATGTAGACG+AGG | + | chr3.3:4263449-4263468 | MS.gene56231:CDS | 35.0% | |
| ACCATAAGAATTACCTCTGA+AGG | - | chr3.3:4264285-4264304 | None:intergenic | 35.0% | |
| ACGTATGTAATATCCTGCAA+AGG | + | chr3.3:4262328-4262347 | MS.gene56231:intron | 35.0% | |
| AGTCATGGAATGGACATAAT+TGG | + | chr3.3:4262864-4262883 | MS.gene56231:CDS | 35.0% | |
| ATGATGTTCGTTCTAATGGT+TGG | + | chr3.3:4261964-4261983 | MS.gene56231:CDS | 35.0% | |
| ATGCATACCTCATCAATCAT+AGG | - | chr3.3:4263090-4263109 | None:intergenic | 35.0% | |
| CAGGATATTACATACGTTGT+CGG | - | chr3.3:4262325-4262344 | None:intergenic | 35.0% | |
| CTTCAGGTACATGAATTTGT+TGG | + | chr3.3:4262816-4262835 | MS.gene56231:intron | 35.0% | |
| GACAACCAAAAAGGAAAGAA+GGG | - | chr3.3:4263492-4263511 | None:intergenic | 35.0% | |
| GAGTGTACAAAAGACATCAA+AGG | + | chr3.3:4263390-4263409 | MS.gene56231:CDS | 35.0% | |
| TAATGTACAGAGTTGGGATT+TGG | + | chr3.3:4263626-4263645 | MS.gene56231:intron | 35.0% | |
| TCAGATATAGACTGTCTAAG+AGG | - | chr3.3:4262891-4262910 | None:intergenic | 35.0% | |
| TCCTTCAGAGGTAATTCTTA+TGG | + | chr3.3:4264281-4264300 | MS.gene56231:intron | 35.0% | |
| TTCCGCAACAAATTACATAG+AGG | - | chr3.3:4262118-4262137 | None:intergenic | 35.0% | |
| TTTCCGACTGCAATAATTAG+CGG | + | chr3.3:4262475-4262494 | MS.gene56231:CDS | 35.0% | |
| ! | ACATTTTTGCTCGAATCACT+TGG | + | chr3.3:4263906-4263925 | MS.gene56231:CDS | 35.0% |
| ! | CTATTTTCTTGCCTTTTGCA+AGG | - | chr3.3:4262236-4262255 | None:intergenic | 35.0% |
| ! | GCATTGTTTCTTGATTACGA+TGG | + | chr3.3:4262255-4262274 | MS.gene56231:CDS | 35.0% |
| !! | CGATAATGTTCAGGTTTTAG+AGG | + | chr3.3:4263845-4263864 | MS.gene56231:intron | 35.0% |
| !! | TGTAATTTGTTGCGGAAGTT+CGG | + | chr3.3:4262121-4262140 | MS.gene56231:intron | 35.0% |
| AAATAAGGCGCAACAATGGT+TGG | - | chr3.3:4262796-4262815 | None:intergenic | 40.0% | |
| ACAATTCCACGGAAGAAGAT+AGG | + | chr3.3:4261933-4261952 | MS.gene56231:CDS | 40.0% | |
| AGAATTCCTATCTTCTTCCG+TGG | - | chr3.3:4261942-4261961 | None:intergenic | 40.0% | |
| AGTGCTTCATAGATCATGAC+TGG | + | chr3.3:4263334-4263353 | MS.gene56231:intron | 40.0% | |
| ATACCTCATCAATCATAGGC+AGG | - | chr3.3:4263086-4263105 | None:intergenic | 40.0% | |
| ATTCCTGCCTATGATTGATG+AGG | + | chr3.3:4263080-4263099 | MS.gene56231:CDS | 40.0% | |
| CAAGAAAAATGTTGCGGAAG+AGG | - | chr3.3:4262743-4262762 | None:intergenic | 40.0% | |
| CATTAGGTCTACCGATAAGA+AGG | + | chr3.3:4262926-4262945 | MS.gene56231:CDS | 40.0% | |
| CGGTAGACCTAATGCAATTA+GGG | - | chr3.3:4262920-4262939 | None:intergenic | 40.0% | |
| CTCGATGATGTTCGTTCTAA+TGG | + | chr3.3:4261960-4261979 | MS.gene56231:CDS | 40.0% | |
| CTTCATATCAAAGGCTTGTC+CGG | + | chr3.3:4263203-4263222 | MS.gene56231:intron | 40.0% | |
| CTTCATTATGCTGGTAGTCA+TGG | + | chr3.3:4262849-4262868 | MS.gene56231:CDS | 40.0% | |
| CTTCCGCTAATTATTGCAGT+CGG | - | chr3.3:4262481-4262500 | None:intergenic | 40.0% | |
| GAAGAAATAAGGCGCAACAA+TGG | - | chr3.3:4262800-4262819 | None:intergenic | 40.0% | |
| GCACCGAAACTTCATATCAA+AGG | + | chr3.3:4263194-4263213 | MS.gene56231:intron | 40.0% | |
| GGACAACCAAAAAGGAAAGA+AGG | - | chr3.3:4263493-4263512 | None:intergenic | 40.0% | |
| GTAAATACATCTGTCGGTGT+TGG | - | chr3.3:4263232-4263251 | None:intergenic | 40.0% | |
| GTATTGCAGTTACTGACACT+GGG | + | chr3.3:4263987-4264006 | MS.gene56231:intron | 40.0% | |
| GTGCTTCATAGATCATGACT+GGG | + | chr3.3:4263335-4263354 | MS.gene56231:intron | 40.0% | |
| TACAAGAGGGACAACCAAAA+AGG | - | chr3.3:4263501-4263520 | None:intergenic | 40.0% | |
| TCATGTTTGTACTAGCTCAG+TGG | + | chr3.3:4262619-4262638 | MS.gene56231:intron | 40.0% | |
| TCGGTAGACCTAATGCAATT+AGG | - | chr3.3:4262921-4262940 | None:intergenic | 40.0% | |
| TGTATTGCAGTTACTGACAC+TGG | + | chr3.3:4263986-4264005 | MS.gene56231:intron | 40.0% | |
| TTATCGTAATGTAGACGAGG+AGG | + | chr3.3:4263452-4263471 | MS.gene56231:CDS | 40.0% | |
| TTATGCTGGTAGTCATGGAA+TGG | + | chr3.3:4262854-4262873 | MS.gene56231:CDS | 40.0% | |
| ! | AAACCGCGTTGCTTTCTTTA+GGG | - | chr3.3:4264248-4264267 | None:intergenic | 40.0% |
| ! | CACTGGGCATGTTTTCATTT+AGG | + | chr3.3:4264003-4264022 | MS.gene56231:intron | 40.0% |
| ! | CTCTGCTACACTTTTAACAG+CGG | - | chr3.3:4262452-4262471 | None:intergenic | 40.0% |
| ! | CTGATGCTGCTTATTTAACC+TGG | + | chr3.3:4262066-4262085 | MS.gene56231:CDS | 40.0% |
| ! | TAAACCGCGTTGCTTTCTTT+AGG | - | chr3.3:4264249-4264268 | None:intergenic | 40.0% |
| ! | TGAAGCACTAACATAGACAC+CGG | - | chr3.3:4263323-4263342 | None:intergenic | 40.0% |
| !! | ATTTTTCAACTGTACCCGAG+GGG | - | chr3.3:4262686-4262705 | None:intergenic | 40.0% |
| !! | CATTTTTCAACTGTACCCGA+GGG | - | chr3.3:4262687-4262706 | None:intergenic | 40.0% |
| !! | TCATTTTTCAACTGTACCCG+AGG | - | chr3.3:4262688-4262707 | None:intergenic | 40.0% |
| !! | TTGTTGCGCCTTATTTCTTC+AGG | + | chr3.3:4262800-4262819 | MS.gene56231:intron | 40.0% |
| !!! | ACTGTAACAGGTTTTGAGTG+AGG | + | chr3.3:4264188-4264207 | MS.gene56231:intron | 40.0% |
| ACGATTAACTCATGGTCGGA+AGG | + | chr3.3:4263692-4263711 | MS.gene56231:CDS | 45.0% | |
| CCAAAAAGGAAAGAAGGGAG+TGG | - | chr3.3:4263487-4263506 | None:intergenic | 45.0% | |
| CCTTAACGAGGACAAGATCA+AGG | + | chr3.3:4261835-4261854 | MS.gene56231:CDS | 45.0% | |
| CCTTGATCTTGTCCTCGTTA+AGG | - | chr3.3:4261838-4261857 | None:intergenic | 45.0% | |
| CTGATACTGCAACCTTAACG+AGG | + | chr3.3:4261823-4261842 | MS.gene56231:CDS | 45.0% | |
| GACCGATGAAGACGCATTTA+AGG | + | chr3.3:4264074-4264093 | MS.gene56231:CDS | 45.0% | |
| GTATGTGTTTCATACCAGCC+AGG | - | chr3.3:4262087-4262106 | None:intergenic | 45.0% | |
| GTCCATCGCTAACAATTCCA+CGG | + | chr3.3:4261922-4261941 | MS.gene56231:CDS | 45.0% | |
| TAGAGTTTCCCTCAGCAACT+GGG | + | chr3.3:4262190-4262209 | MS.gene56231:CDS | 45.0% | |
| TAGCGGAAGAAGTCGTGAAA+AGG | + | chr3.3:4262492-4262511 | MS.gene56231:CDS | 45.0% | |
| TGACTGGGTCATGTTTATGC+AGG | + | chr3.3:4263350-4263369 | MS.gene56231:intron | 45.0% | |
| TGTACAGAGTTGGGATTTGG+TGG | + | chr3.3:4263629-4263648 | MS.gene56231:intron | 45.0% | |
| TTCCGTGGAATTGTTAGCGA+TGG | - | chr3.3:4261927-4261946 | None:intergenic | 45.0% | |
| ! | AACCGCGTTGCTTTCTTTAG+GGG | - | chr3.3:4264247-4264266 | None:intergenic | 45.0% |
| ! | CCACTCCCTTCTTTCCTTTT+TGG | + | chr3.3:4263484-4263503 | MS.gene56231:intron | 45.0% |
| ! | GAAGCACTAACATAGACACC+GGG | - | chr3.3:4263322-4263341 | None:intergenic | 45.0% |
| ! | GAGGAGCATGATTTGTCTTC+AGG | - | chr3.3:4261797-4261816 | None:intergenic | 45.0% |
| ! | TGCTGCTTATTTAACCTGGC+TGG | + | chr3.3:4262070-4262089 | MS.gene56231:CDS | 45.0% |
| !! | ATGAAGTTTCGGTGCTACAC+AGG | - | chr3.3:4263189-4263208 | None:intergenic | 45.0% |
| !!! | TCAGGTTTTAGAGGTTCGAC+CGG | + | chr3.3:4263854-4263873 | MS.gene56231:intron | 45.0% |
| ACCGGTGATTGACTGGGATA+AGG | + | chr3.3:4263872-4263891 | MS.gene56231:CDS | 50.0% | |
| ACGAGGACAAGATCAAGGCT+CGG | + | chr3.3:4261840-4261859 | MS.gene56231:CDS | 50.0% | |
| ACTAACATAGACACCGGGCA+CGG | - | chr3.3:4263317-4263336 | None:intergenic | 50.0% | |
| AGAGTTTCCCTCAGCAACTG+GGG | + | chr3.3:4262191-4262210 | MS.gene56231:CDS | 50.0% | |
| AGCTCGACCTTGTAACCTCA+AGG | + | chr3.3:4262646-4262665 | MS.gene56231:intron | 50.0% | |
| ATAGGCAGGAATTCAGCAGC+AGG | - | chr3.3:4263072-4263091 | None:intergenic | 50.0% | |
| CAGCATGTCCGTCTTAGTGT+TGG | + | chr3.3:4263289-4263308 | MS.gene56231:intron | 50.0% | |
| CCCTTATCCCAGTCAATCAC+CGG | - | chr3.3:4263876-4263895 | None:intergenic | 50.0% | |
| CCGGTGATTGACTGGGATAA+GGG | + | chr3.3:4263873-4263892 | MS.gene56231:CDS | 50.0% | |
| CGCTCAGGATTGTCGACAAT+TGG | - | chr3.3:4262291-4262310 | None:intergenic | 50.0% | |
| CTAGAGTTTCCCTCAGCAAC+TGG | + | chr3.3:4262189-4262208 | MS.gene56231:CDS | 50.0% | |
| CTCTCTGTGTGATCCTTCAG+AGG | + | chr3.3:4264269-4264288 | MS.gene56231:CDS | 50.0% | |
| CTCTGTCCCTTGAGGTTACA+AGG | - | chr3.3:4262656-4262675 | None:intergenic | 50.0% | |
| GAGTTGAACTCTGTCCCTTG+AGG | - | chr3.3:4262664-4262683 | None:intergenic | 50.0% | |
| GCTCGACCTTGTAACCTCAA+GGG | + | chr3.3:4262647-4262666 | MS.gene56231:intron | 50.0% | |
| GTTGCAGTATCAGCAATGCG+AGG | - | chr3.3:4261816-4261835 | None:intergenic | 50.0% | |
| ! | ACAGTGCTATTCGCCTTTGC+AGG | - | chr3.3:4262344-4262363 | None:intergenic | 50.0% |
| ! | GGAGAGCATGACAGACTTGA+AGG | - | chr3.3:4261876-4261895 | None:intergenic | 50.0% |
| AGGTTCGACCGGTGATTGAC+TGG | + | chr3.3:4263865-4263884 | MS.gene56231:CDS | 55.0% | |
| CGCCCCTAAAGAAAGCAACG+CGG | + | chr3.3:4264242-4264261 | MS.gene56231:CDS | 55.0% | |
| GACAGAGTTCAACTCCCCTC+GGG | + | chr3.3:4262669-4262688 | MS.gene56231:intron | 55.0% | |
| GCACGGCACCAACACTAAGA+CGG | - | chr3.3:4263300-4263319 | None:intergenic | 55.0% | |
| GCAGGAATTCAGCAGCAGGT+TGG | - | chr3.3:4263068-4263087 | None:intergenic | 55.0% | |
| GGACAGAGTTCAACTCCCCT+CGG | + | chr3.3:4262668-4262687 | MS.gene56231:intron | 55.0% | |
| GGTTCGACCGGTGATTGACT+GGG | + | chr3.3:4263866-4263885 | MS.gene56231:CDS | 55.0% | |
| TCAAAGGCCCCAGTTGCTGA+GGG | - | chr3.3:4262201-4262220 | None:intergenic | 55.0% | |
| TTCAAAGGCCCCAGTTGCTG+AGG | - | chr3.3:4262202-4262221 | None:intergenic | 55.0% | |
| ! | CGCGTTGCTTTCTTTAGGGG+CGG | - | chr3.3:4264244-4264263 | None:intergenic | 55.0% |
| ! | TCGGACATGAAAGCACGCTC+AGG | - | chr3.3:4262306-4262325 | None:intergenic | 55.0% |
| !! | ACAAGATCAAGGCTCGGTGC+AGG | + | chr3.3:4261846-4261865 | MS.gene56231:CDS | 55.0% |
| !! | CATCTGTCGGTGTTGGACAC+CGG | - | chr3.3:4263225-4263244 | None:intergenic | 55.0% |
| !! | GTTTCGGTGCTACACAGGCT+AGG | - | chr3.3:4263184-4263203 | None:intergenic | 55.0% |
| !! | CTTAGTGTTGGTGCCGTGCC+CGG | + | chr3.3:4263301-4263320 | MS.gene56231:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4261789 | 4264363 | 4261789 | ID=MS.gene56231 |
| chr3.3 | mRNA | 4261789 | 4264363 | 4261789 | ID=MS.gene56231.t1;Parent=MS.gene56231 |
| chr3.3 | exon | 4261789 | 4262091 | 4261789 | ID=MS.gene56231.t1.exon1;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4261789 | 4262091 | 4261789 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4262189 | 4262329 | 4262189 | ID=MS.gene56231.t1.exon2;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4262189 | 4262329 | 4262189 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4262442 | 4262513 | 4262442 | ID=MS.gene56231.t1.exon3;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4262442 | 4262513 | 4262442 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4262822 | 4262947 | 4262822 | ID=MS.gene56231.t1.exon4;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4262822 | 4262947 | 4262822 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4263045 | 4263101 | 4263045 | ID=MS.gene56231.t1.exon5;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4263045 | 4263101 | 4263045 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4263372 | 4263473 | 4263372 | ID=MS.gene56231.t1.exon6;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4263372 | 4263473 | 4263372 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4263636 | 4263713 | 4263636 | ID=MS.gene56231.t1.exon7;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4263636 | 4263713 | 4263636 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4263858 | 4263927 | 4263858 | ID=MS.gene56231.t1.exon8;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4263858 | 4263927 | 4263858 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4264025 | 4264095 | 4264025 | ID=MS.gene56231.t1.exon9;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4264025 | 4264095 | 4264025 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4264198 | 4264290 | 4264198 | ID=MS.gene56231.t1.exon10;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4264198 | 4264290 | 4264198 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| chr3.3 | exon | 4264328 | 4264363 | 4264328 | ID=MS.gene56231.t1.exon11;Parent=MS.gene56231.t1 |
| chr3.3 | CDS | 4264328 | 4264363 | 4264328 | ID=cds.MS.gene56231.t1;Parent=MS.gene56231.t1 |
| Gene Sequence |
| Protein sequence |
