Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56248.t1 | AFK37837.1 | 95.9 | 492 | 19 | 1 | 1 | 492 | 1 | 491 | 9.10E-261 | 909.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56248.t1 | Q5B5X8 | 32.4 | 339 | 174 | 14 | 196 | 488 | 59 | 388 | 2.0e-38 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56248.t1 | I3SC45 | 95.9 | 492 | 19 | 1 | 1 | 492 | 1 | 491 | 6.6e-261 | 909.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054742 | MS.gene56248 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene055601 | MS.gene56248 | 0.815789 | 7.72E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene56248 | 0.811813 | 5.80E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56248.t1 | MTR_3g009010 | 95.122 | 492 | 23 | 1 | 1 | 492 | 72 | 562 | 0.0 | 974 |
| MS.gene56248.t1 | MTR_3g008960 | 90.650 | 492 | 43 | 1 | 1 | 492 | 1 | 489 | 0.0 | 922 |
| MS.gene56248.t1 | MTR_3g009020 | 83.547 | 468 | 76 | 1 | 26 | 492 | 6 | 473 | 0.0 | 820 |
| MS.gene56248.t1 | MTR_3g009030 | 78.916 | 498 | 98 | 4 | 1 | 492 | 1 | 497 | 0.0 | 782 |
| MS.gene56248.t1 | MTR_8g091310 | 61.477 | 501 | 179 | 5 | 6 | 492 | 6 | 506 | 0.0 | 649 |
| MS.gene56248.t1 | MTR_5g062190 | 54.150 | 506 | 214 | 9 | 1 | 492 | 6 | 507 | 0.0 | 559 |
| MS.gene56248.t1 | MTR_5g062290 | 53.427 | 496 | 216 | 8 | 8 | 492 | 14 | 505 | 0.0 | 543 |
| MS.gene56248.t1 | MTR_3g086750 | 47.610 | 502 | 240 | 11 | 9 | 492 | 9 | 505 | 1.38e-159 | 463 |
| MS.gene56248.t1 | MTR_4g035760 | 47.581 | 124 | 64 | 1 | 370 | 492 | 56 | 179 | 4.77e-38 | 137 |
| MS.gene56248.t1 | MTR_5g061980 | 53.271 | 107 | 47 | 3 | 161 | 265 | 87 | 192 | 2.89e-30 | 120 |
| MS.gene56248.t1 | MTR_5g061980 | 46.591 | 88 | 45 | 2 | 348 | 433 | 219 | 306 | 2.16e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGATCACATAAGTATT+TGG | 0.123305 | 3.3:+4532501 | None:intergenic |
| CTATTATTTGAGCTTCTTAT+TGG | 0.156319 | 3.3:-4536563 | MS.gene56248:CDS |
| ACATATCTTTGCGCTGAAAA+TGG | 0.170576 | 3.3:-4534865 | MS.gene56248:CDS |
| GCTTACAAAGCTGTGAATTT+AGG | 0.195268 | 3.3:-4536505 | MS.gene56248:CDS |
| TGCATTACTACAATATGTTT+TGG | 0.227561 | 3.3:-4532407 | MS.gene56248:CDS |
| CTTCTGGTTGGGAAACATTC+AGG | 0.235880 | 3.3:-4534807 | MS.gene56248:CDS |
| TTATAATCTGAAATGTTTCT+TGG | 0.244588 | 3.3:+4534557 | None:intergenic |
| TTCAGATTCATGTCACAAAA+TGG | 0.258732 | 3.3:-4533788 | MS.gene56248:CDS |
| AAGAAACATTTCAGATTATA+AGG | 0.276821 | 3.3:-4534555 | MS.gene56248:CDS |
| TCATAGAGTTCTTAGCAAAA+AGG | 0.293278 | 3.3:-4533049 | MS.gene56248:intron |
| CTCAAGTGGTTGATCGAAAA+TGG | 0.301104 | 3.3:-4531708 | MS.gene56248:CDS |
| CAGATTATGAGGGCACAAAT+TGG | 0.303729 | 3.3:-4534037 | MS.gene56248:CDS |
| GCAGTTGAAGGTTCTCAAAA+TGG | 0.307654 | 3.3:-4533143 | MS.gene56248:CDS |
| TTTGTGCTTGGACATATCTT+TGG | 0.315120 | 3.3:+4531802 | None:intergenic |
| ACATGATCACATAAGTATTT+GGG | 0.338303 | 3.3:+4532502 | None:intergenic |
| CATATCTTTGCGCTGAAAAT+GGG | 0.349908 | 3.3:-4534864 | MS.gene56248:CDS |
| GTATATTCTCGTGCAACATT+TGG | 0.351147 | 3.3:-4531774 | MS.gene56248:CDS |
| AAGCTGTGAATTTAGGAAAC+TGG | 0.354101 | 3.3:-4536498 | MS.gene56248:CDS |
| GTTGAACACCCTAAAATTGA+AGG | 0.385361 | 3.3:+4534651 | None:intergenic |
| GCCGACCGTAGTTCACCTTC+TGG | 0.397256 | 3.3:-4534823 | MS.gene56248:CDS |
| ATCAGTGACTGCAGATTATG+AGG | 0.405023 | 3.3:-4534048 | MS.gene56248:CDS |
| CTATCTTGATTGACACTTAG+TGG | 0.410417 | 3.3:+4532573 | None:intergenic |
| TGGCTCATTTGCAGCTTTGG+AGG | 0.420703 | 3.3:-4534687 | MS.gene56248:intron |
| CCGTAGTTCACCTTCTGGTT+GGG | 0.427471 | 3.3:-4534818 | MS.gene56248:CDS |
| TACCAACTTACTAATGGTTA+TGG | 0.431118 | 3.3:-4533957 | MS.gene56248:CDS |
| TACTGTTCTATTTAGGGGAA+TGG | 0.435757 | 3.3:-4531866 | MS.gene56248:intron |
| ATGGAACCTTCTCGCTTTGA+CGG | 0.442568 | 3.3:-4536457 | MS.gene56248:CDS |
| CTTCTTCTCTCATTTGTCAA+AGG | 0.444788 | 3.3:-4532453 | MS.gene56248:CDS |
| CGCCATAACCATTAGTAAGT+TGG | 0.454539 | 3.3:+4533955 | None:intergenic |
| ACCGTAGTTCACCTTCTGGT+TGG | 0.463053 | 3.3:-4534819 | MS.gene56248:CDS |
| TTTCAGCGCAAAGATATGTC+TGG | 0.466042 | 3.3:+4534869 | None:intergenic |
| GGCTCATTTGCAGCTTTGGA+GGG | 0.466108 | 3.3:-4534686 | MS.gene56248:intron |
| TGAAATGTTTCTTGGTTGCT+AGG | 0.468956 | 3.3:+4534565 | None:intergenic |
| GTGGACTTGCATGCAGTTGA+AGG | 0.475672 | 3.3:-4533155 | MS.gene56248:CDS |
| TTCTGGTTGGGAAACATTCA+GGG | 0.477116 | 3.3:-4534806 | MS.gene56248:intron |
| AGATTATGAGGGCACAAATT+GGG | 0.477446 | 3.3:-4534036 | MS.gene56248:CDS |
| TTTGTGGGGTTAAATAATAT+AGG | 0.482260 | 3.3:-4534622 | MS.gene56248:CDS |
| GATAGAGCCGGGGATCTTAG+TGG | 0.482843 | 3.3:-4532333 | MS.gene56248:CDS |
| TGAGCTATCCACCATCCAAC+AGG | 0.483400 | 3.3:+4533746 | None:intergenic |
| GGAGAATACCAACTTACTAA+TGG | 0.490578 | 3.3:-4533963 | MS.gene56248:CDS |
| ATTCGAATCAAAGCATCAAA+TGG | 0.491455 | 3.3:-4534511 | MS.gene56248:CDS |
| AAGATATGTCCAAGCACAAA+TGG | 0.494100 | 3.3:-4531799 | MS.gene56248:CDS |
| TTCTCGTGCAACATTTGGAT+GGG | 0.495505 | 3.3:-4531769 | MS.gene56248:CDS |
| AATTGTCAACAAAGATCTCT+TGG | 0.496005 | 3.3:-4536434 | MS.gene56248:intron |
| TAGGGGAATGGACGGCTGAA+TGG | 0.496560 | 3.3:-4531854 | MS.gene56248:CDS |
| CAAGAGATGGATATACAGAA+TGG | 0.497454 | 3.3:-4533103 | MS.gene56248:CDS |
| AATATACATCCATTTGTGCT+TGG | 0.498617 | 3.3:+4531790 | None:intergenic |
| GTTGCTAGGTGAATCTGAAA+AGG | 0.499593 | 3.3:+4534579 | None:intergenic |
| AAGAGATGGATATACAGAAT+GGG | 0.502002 | 3.3:-4533102 | MS.gene56248:CDS |
| CACTTGACAATGCTTTCACA+TGG | 0.508127 | 3.3:-4533679 | MS.gene56248:CDS |
| TTTGTAACTTGCAGTAGGCA+TGG | 0.514566 | 3.3:-4533191 | MS.gene56248:intron |
| TACATAAGAAATGATAGAGC+CGG | 0.520749 | 3.3:-4532345 | MS.gene56248:CDS |
| ATTCTCGTGCAACATTTGGA+TGG | 0.521002 | 3.3:-4531770 | MS.gene56248:CDS |
| TTGTAACTTGCAGTAGGCAT+GGG | 0.521331 | 3.3:-4533190 | MS.gene56248:intron |
| ACATAAGAAATGATAGAGCC+GGG | 0.521389 | 3.3:-4532344 | MS.gene56248:CDS |
| ACTGGCTTGTTGCTGAAGGA+TGG | 0.521485 | 3.3:-4536480 | MS.gene56248:CDS |
| TGTGATCATGTCAAATCCAT+TGG | 0.526301 | 3.3:-4532490 | MS.gene56248:CDS |
| GAGCATAGTGGAACAAGAGA+TGG | 0.530600 | 3.3:-4533116 | MS.gene56248:CDS |
| CTGCCTTGTAATAGTTCTTG+AGG | 0.537261 | 3.3:+4532550 | None:intergenic |
| GCTTGTTGCTGAAGGATGGA+TGG | 0.547369 | 3.3:-4536476 | MS.gene56248:CDS |
| TTTCTTACCCTCATGACTTG+AGG | 0.552403 | 3.3:+4533924 | None:intergenic |
| ATATCTTTGCGCTGAAAATG+GGG | 0.554384 | 3.3:-4534863 | MS.gene56248:CDS |
| ACGGCTGAATGGAGCATACA+AGG | 0.556489 | 3.3:-4531843 | MS.gene56248:CDS |
| CAGTTATGTATGAATTCCAA+TGG | 0.561323 | 3.3:+4533819 | None:intergenic |
| ACAAATGTCAGAATAACCAT+TGG | 0.569248 | 3.3:-4531734 | MS.gene56248:CDS |
| GGAAACTGGCTTGTTGCTGA+AGG | 0.571457 | 3.3:-4536484 | MS.gene56248:CDS |
| GTGGGGTTAAATAATATAGG+AGG | 0.575488 | 3.3:-4534619 | MS.gene56248:CDS |
| CCCCAACAAAAGGCTTAGGT+GGG | 0.579618 | 3.3:+4533714 | None:intergenic |
| GTTCTATTTAGGGGAATGGA+CGG | 0.581821 | 3.3:-4531862 | MS.gene56248:intron |
| GGGTTAAATAATATAGGAGG+AGG | 0.582810 | 3.3:-4534616 | MS.gene56248:CDS |
| ACTATTGTAAACACATTACA+AGG | 0.585005 | 3.3:-4533984 | MS.gene56248:CDS |
| GCATGGGATGAAAGTGATTG+TGG | 0.591242 | 3.3:-4533174 | MS.gene56248:CDS |
| AGAGAAACCACTAAGATCCC+CGG | 0.594540 | 3.3:+4532326 | None:intergenic |
| ACCAGAAGGTGAACTACGGT+CGG | 0.604107 | 3.3:+4534822 | None:intergenic |
| ACAATTCCGTCAAAGCGAGA+AGG | 0.606902 | 3.3:+4536451 | None:intergenic |
| TATTGTAGTAATGCACATCA+AGG | 0.609097 | 3.3:+4532415 | None:intergenic |
| ATAGAGCTCCTCAAGTCATG+AGG | 0.611152 | 3.3:-4533932 | MS.gene56248:CDS |
| CTGAATGTTTCCCAACCAGA+AGG | 0.618940 | 3.3:+4534808 | None:intergenic |
| TAGCCTCAAGAACTATTACA+AGG | 0.620823 | 3.3:-4532553 | MS.gene56248:CDS |
| CAGTGAGGATACCTGTTGGA+TGG | 0.625186 | 3.3:-4533757 | MS.gene56248:CDS |
| CCCAACCAGAAGGTGAACTA+CGG | 0.625802 | 3.3:+4534818 | None:intergenic |
| TGAGGATACCTGTTGGATGG+TGG | 0.641335 | 3.3:-4533754 | MS.gene56248:CDS |
| ATAACCATTGGAGTCTCAAG+TGG | 0.641339 | 3.3:-4531722 | MS.gene56248:CDS |
| TCAGTGACTGCAGATTATGA+GGG | 0.647319 | 3.3:-4534047 | MS.gene56248:CDS |
| AGAGATGGATATACAGAATG+GGG | 0.649350 | 3.3:-4533101 | MS.gene56248:CDS |
| TAAGCAAACGAAAGAGCGTG+AGG | 0.662674 | 3.3:+4536523 | None:intergenic |
| AGGCAGCTTATGATGTTGTG+AGG | 0.665952 | 3.3:-4532533 | MS.gene56248:CDS |
| TAGAGCTCCTCAAGTCATGA+GGG | 0.665978 | 3.3:-4533931 | MS.gene56248:intron |
| TATCTTTGCGCTGAAAATGG+GGG | 0.665981 | 3.3:-4534862 | MS.gene56248:CDS |
| TCAACCACTTGAGACTCCAA+TGG | 0.670774 | 3.3:+4531718 | None:intergenic |
| GATGCAGTGAGGATACCTGT+TGG | 0.680380 | 3.3:-4533761 | MS.gene56248:CDS |
| TCTATGACAGAGACTGTCTG+TGG | 0.680638 | 3.3:+4533065 | None:intergenic |
| ACTTGACAATGCTTTCACAT+GGG | 0.683824 | 3.3:-4533678 | MS.gene56248:CDS |
| CATAAGAAATGATAGAGCCG+GGG | 0.686971 | 3.3:-4532343 | MS.gene56248:CDS |
| AAAATGGATTAGATGCAGTG+AGG | 0.737558 | 3.3:-4533772 | MS.gene56248:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATAAATTAATAT+GGG | + | chr3.3:4531868-4531887 | None:intergenic | 0.0% |
| !! | TATATATATATAAATTAATA+TGG | + | chr3.3:4531869-4531888 | None:intergenic | 0.0% |
| !! | AATCATAAATTTATAAAGAA+AGG | + | chr3.3:4535485-4535504 | None:intergenic | 10.0% |
| !! | ATAAATTATAGTAACATTAA+TGG | - | chr3.3:4534898-4534917 | MS.gene56248:CDS | 10.0% |
| !! | TTTGTTAAATATTATAAAGA+CGG | + | chr3.3:4532198-4532217 | None:intergenic | 10.0% |
| !!! | ATTACATGATTTTATTAAAA+TGG | + | chr3.3:4533834-4533853 | None:intergenic | 10.0% |
| !!! | TAGAAGTTTTAAATAAAATT+GGG | - | chr3.3:4534859-4534878 | MS.gene56248:CDS | 10.0% |
| !!! | TTAGAAGTTTTAAATAAAAT+TGG | - | chr3.3:4534858-4534877 | MS.gene56248:CDS | 10.0% |
| !! | AATAGACTATAAAAAATATG+GGG | + | chr3.3:4533160-4533179 | None:intergenic | 15.0% |
| !! | ATATATACTTCAAAGTTATA+AGG | - | chr3.3:4535007-4535026 | MS.gene56248:intron | 15.0% |
| !! | CAATAGACTATAAAAAATAT+GGG | + | chr3.3:4533161-4533180 | None:intergenic | 15.0% |
| !! | GATTTAAATTCAAAGTTATA+AGG | - | chr3.3:4534948-4534967 | MS.gene56248:intron | 15.0% |
| !! | TATAGTAATAGAAAAAGTTT+AGG | - | chr3.3:4535651-4535670 | MS.gene56248:intron | 15.0% |
| !!! | AAAAGTTAAGTTCTAATTAT+TGG | - | chr3.3:4533562-4533581 | MS.gene56248:intron | 15.0% |
| !!! | AAAATTTTAAAATGACATGA+CGG | - | chr3.3:4535333-4535352 | MS.gene56248:intron | 15.0% |
| !!! | ATATAATATAATAGTTTTGG+TGG | + | chr3.3:4532017-4532036 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAAATTTTT+TGG | + | chr3.3:4532792-4532811 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTAAAAGTTTATA+AGG | + | chr3.3:4533121-4533140 | None:intergenic | 15.0% |
| !!! | TGTTTTAATTTAGATTGTAA+AGG | - | chr3.3:4533030-4533049 | MS.gene56248:intron | 15.0% |
| !!! | TTTTTTTGTCAATAGTTTAA+TGG | + | chr3.3:4532488-4532507 | None:intergenic | 15.0% |
| !! | AAAAAAATCATATATACCGA+AGG | + | chr3.3:4532049-4532068 | None:intergenic | 20.0% |
| !! | AAATATATACGTACTAGAAA+AGG | - | chr3.3:4532227-4532246 | MS.gene56248:intron | 20.0% |
| !! | AAATTGAATGTTGAACTAAA+GGG | + | chr3.3:4534676-4534695 | None:intergenic | 20.0% |
| !! | AAGAAACATTTCAGATTATA+AGG | - | chr3.3:4533714-4533733 | MS.gene56248:CDS | 20.0% |
| !! | ATAGACTATAAAAAATATGG+GGG | + | chr3.3:4533159-4533178 | None:intergenic | 20.0% |
| !! | CCAATAGACTATAAAAAATA+TGG | + | chr3.3:4533162-4533181 | None:intergenic | 20.0% |
| !! | GAACAAAATTAAAGTTGTAT+TGG | + | chr3.3:4532832-4532851 | None:intergenic | 20.0% |
| !! | GTAACTTGATTTAAAAGAAT+TGG | + | chr3.3:4533895-4533914 | None:intergenic | 20.0% |
| !! | TAAATTGAATGTTGAACTAA+AGG | + | chr3.3:4534677-4534696 | None:intergenic | 20.0% |
| !! | TTTGTAATGCTTGATAAAAT+TGG | - | chr3.3:4532680-4532699 | MS.gene56248:intron | 20.0% |
| !!! | AAAAAATGTTAAAGTACTCA+AGG | - | chr3.3:4532331-4532350 | MS.gene56248:CDS | 20.0% |
| !!! | AAAAATGTTAAAGTACTCAA+GGG | - | chr3.3:4532332-4532351 | MS.gene56248:CDS | 20.0% |
| !!! | AATTTTACTGTTCTATTTAG+GGG | - | chr3.3:4536398-4536417 | MS.gene56248:intron | 20.0% |
| !!! | ACAATTTTACTGTTCTATTT+AGG | - | chr3.3:4536396-4536415 | MS.gene56248:intron | 20.0% |
| !!! | AGTACTTTAACATTTTTTTG+TGG | + | chr3.3:4532329-4532348 | None:intergenic | 20.0% |
| !!! | CAATTTTACTGTTCTATTTA+GGG | - | chr3.3:4536397-4536416 | MS.gene56248:intron | 20.0% |
| !!! | CCATATTTTTTATAGTCTAT+TGG | - | chr3.3:4533159-4533178 | MS.gene56248:CDS | 20.0% |
| !!! | GTTTAATTTTAAGCCAAATA+TGG | - | chr3.3:4532576-4532595 | MS.gene56248:CDS | 20.0% |
| !!! | TACATTGTTTGATTTAAAAC+CGG | + | chr3.3:4533258-4533277 | None:intergenic | 20.0% |
| !!! | TTAAATAAAATTGGGTTAGA+GGG | - | chr3.3:4534867-4534886 | MS.gene56248:CDS | 20.0% |
| !!! | TTATAATCTGAAATGTTTCT+TGG | + | chr3.3:4533715-4533734 | None:intergenic | 20.0% |
| !!! | TTTAAATAAAATTGGGTTAG+AGG | - | chr3.3:4534866-4534885 | MS.gene56248:CDS | 20.0% |
| !!! | TTTAAGTTTGTCTTTTTCTT+GGG | - | chr3.3:4532904-4532923 | MS.gene56248:intron | 20.0% |
| !!! | TTTTGATCTTTGATGATTTT+AGG | - | chr3.3:4533343-4533362 | MS.gene56248:intron | 20.0% |
| !!! | TTTTTGTGAACTAAGTTTTA+AGG | + | chr3.3:4535575-4535594 | None:intergenic | 20.0% |
| ! | AAGAAAGGTAAATGTTGATA+CGG | + | chr3.3:4535470-4535489 | None:intergenic | 25.0% |
| ! | AATAATGAACTTGCAAGATT+TGG | - | chr3.3:4534389-4534408 | MS.gene56248:intron | 25.0% |
| ! | ACATGATCACATAAGTATTT+GGG | + | chr3.3:4535770-4535789 | None:intergenic | 25.0% |
| ! | ACTATTGTAAACACATTACA+AGG | - | chr3.3:4534285-4534304 | MS.gene56248:intron | 25.0% |
| ! | AGATATGTAAAGTAATAGAG+AGG | + | chr3.3:4535549-4535568 | None:intergenic | 25.0% |
| ! | AGTAATAGAAAAAGTTTAGG+AGG | - | chr3.3:4535654-4535673 | MS.gene56248:intron | 25.0% |
| ! | ATAATATATGCAAGACCTTA+GGG | - | chr3.3:4532288-4532307 | MS.gene56248:intron | 25.0% |
| ! | ATGTTACCATTAATGTTTAG+TGG | + | chr3.3:4534985-4535004 | None:intergenic | 25.0% |
| ! | ATTATATTATGAGTCTCCTT+CGG | - | chr3.3:4532030-4532049 | MS.gene56248:intron | 25.0% |
| ! | CTATTATTTGAGCTTCTTAT+TGG | - | chr3.3:4531706-4531725 | MS.gene56248:CDS | 25.0% |
| ! | GAATACAATCAGTCTATTTA+CGG | + | chr3.3:4536243-4536262 | None:intergenic | 25.0% |
| ! | GGTAAGTAATGTATATATCT+AGG | - | chr3.3:4533484-4533503 | MS.gene56248:intron | 25.0% |
| ! | GTGTTCAACAAAAAATTTGT+GGG | - | chr3.3:4533632-4533651 | MS.gene56248:intron | 25.0% |
| ! | TAAAGAAATCAGTTTCGAAT+AGG | + | chr3.3:4535606-4535625 | None:intergenic | 25.0% |
| ! | TAGACAATGATGAATAAACA+AGG | + | chr3.3:4532556-4532575 | None:intergenic | 25.0% |
| ! | TGTTCAACAAAAAATTTGTG+GGG | - | chr3.3:4533633-4533652 | MS.gene56248:intron | 25.0% |
| ! | TTTGTGGGGTTAAATAATAT+AGG | - | chr3.3:4533647-4533666 | MS.gene56248:intron | 25.0% |
| !! | ACCATTACTGTGATAATTTT+TGG | + | chr3.3:4535511-4535530 | None:intergenic | 25.0% |
| !! | AGACTTTGAAAAAATGACAT+TGG | - | chr3.3:4533931-4533950 | MS.gene56248:intron | 25.0% |
| !! | ATATATTTGTAACTTGCAGT+AGG | - | chr3.3:4535073-4535092 | MS.gene56248:intron | 25.0% |
| !! | CCATTACTGTGATAATTTTT+GGG | + | chr3.3:4535510-4535529 | None:intergenic | 25.0% |
| !! | CGTTTCTAACATTTTTCTTA+CGG | - | chr3.3:4534087-4534106 | MS.gene56248:intron | 25.0% |
| !! | GCATTACTACAATATGTTTT+GGG | - | chr3.3:4535863-4535882 | MS.gene56248:intron | 25.0% |
| !! | TAGGAATGTTTTCATTTCAA+TGG | + | chr3.3:4532150-4532169 | None:intergenic | 25.0% |
| !! | TGCATTACTACAATATGTTT+TGG | - | chr3.3:4535862-4535881 | MS.gene56248:intron | 25.0% |
| !!! | ACTTTAACATTTTTTTGTGG+TGG | + | chr3.3:4532326-4532345 | None:intergenic | 25.0% |
| !!! | CTTTAAGTTTGTCTTTTTCT+TGG | - | chr3.3:4532903-4532922 | MS.gene56248:intron | 25.0% |
| !!! | GTAATCACATTTTTGTTTAG+TGG | + | chr3.3:4535044-4535063 | None:intergenic | 25.0% |
| !!! | GTTTTTTAGCAAATCAAATG+CGG | - | chr3.3:4533311-4533330 | MS.gene56248:intron | 25.0% |
| AAACATGTTAAGAACTCAGT+TGG | - | chr3.3:4532253-4532272 | MS.gene56248:intron | 30.0% | |
| AAATATGGAAATAGACCAAG+TGG | - | chr3.3:4532591-4532610 | MS.gene56248:CDS | 30.0% | |
| AAATCCTTGCTAATGTTAGT+TGG | - | chr3.3:4536002-4536021 | MS.gene56248:intron | 30.0% | |
| AACTAACATTAGCAAGGATT+TGG | + | chr3.3:4536003-4536022 | None:intergenic | 30.0% | |
| AAGAGATGGATATACAGAAT+GGG | - | chr3.3:4535167-4535186 | MS.gene56248:intron | 30.0% | |
| AAGTGACACTCATTATGAAA+CGG | + | chr3.3:4532766-4532785 | None:intergenic | 30.0% | |
| AATATACATCCATTTGTGCT+TGG | + | chr3.3:4536482-4536501 | None:intergenic | 30.0% | |
| AATCTTGTCTTGATTACACT+TGG | - | chr3.3:4533516-4533535 | MS.gene56248:intron | 30.0% | |
| AATTGTCAACAAAGATCTCT+TGG | - | chr3.3:4531835-4531854 | MS.gene56248:CDS | 30.0% | |
| ACAAATGTCAGAATAACCAT+TGG | - | chr3.3:4536535-4536554 | MS.gene56248:CDS | 30.0% | |
| ACTAACATTAGCAAGGATTT+GGG | + | chr3.3:4536002-4536021 | None:intergenic | 30.0% | |
| ACTTGGTCTATTTCCATATT+TGG | + | chr3.3:4532592-4532611 | None:intergenic | 30.0% | |
| ACTTTGAATTTAAATCCGCT+TGG | + | chr3.3:4534944-4534963 | None:intergenic | 30.0% | |
| ATAGTCATGTGAAAAACTGA+TGG | + | chr3.3:4534270-4534289 | None:intergenic | 30.0% | |
| ATTGAACCTTCACACATATA+TGG | + | chr3.3:4534194-4534213 | None:intergenic | 30.0% | |
| CAATGATGAATAAACAAGGA+AGG | + | chr3.3:4532552-4532571 | None:intergenic | 30.0% | |
| CAGTTATGTATGAATTCCAA+TGG | + | chr3.3:4534453-4534472 | None:intergenic | 30.0% | |
| CATAATATATGCAAGACCTT+AGG | - | chr3.3:4532287-4532306 | MS.gene56248:intron | 30.0% | |
| CCCAAAAATTATCACAGTAA+TGG | - | chr3.3:4535507-4535526 | MS.gene56248:intron | 30.0% | |
| CTCTTACCACTAAACATTAA+TGG | - | chr3.3:4534976-4534995 | MS.gene56248:intron | 30.0% | |
| GAAACGAATTCTACATAAAG+TGG | - | chr3.3:4534013-4534032 | MS.gene56248:CDS | 30.0% | |
| GACATGATCACATAAGTATT+TGG | + | chr3.3:4535771-4535790 | None:intergenic | 30.0% | |
| GAGAATTTGTATGTTGAACA+GGG | + | chr3.3:4532381-4532400 | None:intergenic | 30.0% | |
| GCTCGTAGTAAAAAATCAAT+TGG | + | chr3.3:4532413-4532432 | None:intergenic | 30.0% | |
| GGTGTTCAACAAAAAATTTG+TGG | - | chr3.3:4533631-4533650 | MS.gene56248:intron | 30.0% | |
| GTAATGCTTGATAAAATTGG+TGG | - | chr3.3:4532683-4532702 | MS.gene56248:intron | 30.0% | |
| TACATAAGAAATGATAGAGC+CGG | - | chr3.3:4535924-4535943 | MS.gene56248:intron | 30.0% | |
| TACCAACTTACTAATGGTTA+TGG | - | chr3.3:4534312-4534331 | MS.gene56248:intron | 30.0% | |
| TATTGTAGTAATGCACATCA+AGG | + | chr3.3:4535857-4535876 | None:intergenic | 30.0% | |
| TCATAGAGTTCTTAGCAAAA+AGG | - | chr3.3:4535220-4535239 | MS.gene56248:intron | 30.0% | |
| TTACTAAAATAGTCACCAAG+CGG | - | chr3.3:4534926-4534945 | MS.gene56248:intron | 30.0% | |
| TTCAGATTCATGTCACAAAA+TGG | - | chr3.3:4534481-4534500 | MS.gene56248:intron | 30.0% | |
| ! | AAGAATTGGTCTCTTAAGAT+TGG | + | chr3.3:4533881-4533900 | None:intergenic | 30.0% |
| ! | AGTTGGAGTATTTATTGAGT+TGG | + | chr3.3:4532857-4532876 | None:intergenic | 30.0% |
| ! | ATTCGAATCAAAGCATCAAA+TGG | - | chr3.3:4533758-4533777 | MS.gene56248:CDS | 30.0% |
| ! | GTTGGAGTATTTATTGAGTT+GGG | + | chr3.3:4532856-4532875 | None:intergenic | 30.0% |
| ! | TCTAATACTCGCACTTTTAT+CGG | + | chr3.3:4534060-4534079 | None:intergenic | 30.0% |
| ! | TGACTCATCCTTCAATTTTA+GGG | - | chr3.3:4533610-4533629 | MS.gene56248:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr3.3:4532996-4533015 | MS.gene56248:intron | 30.0% |
| !! | ATGCTTTGATTCGAATTTTG+AGG | + | chr3.3:4533754-4533773 | None:intergenic | 30.0% |
| !! | GATCTTTGATGATTTTAGGA+TGG | - | chr3.3:4533347-4533366 | MS.gene56248:intron | 30.0% |
| !! | GGTTTAAATTGATTAGCTTG+AGG | + | chr3.3:4533813-4533832 | None:intergenic | 30.0% |
| !! | TAAATTGATTAGCTTGAGGA+TGG | + | chr3.3:4533809-4533828 | None:intergenic | 30.0% |
| !! | TGCTTTGATTCGAATTTTGA+GGG | + | chr3.3:4533753-4533772 | None:intergenic | 30.0% |
| !!! | ATCAAATGGTCTATTTTTGC+AGG | - | chr3.3:4533772-4533791 | MS.gene56248:CDS | 30.0% |
| !!! | ATGTTTTGGGACAAATTCAA+TGG | - | chr3.3:4535876-4535895 | MS.gene56248:intron | 30.0% |
| !!! | ATTGATTTTTTACTACGAGC+TGG | - | chr3.3:4532413-4532432 | MS.gene56248:CDS | 30.0% |
| !!! | ATTTTAAAATGACATGACGG+AGG | - | chr3.3:4535336-4535355 | MS.gene56248:intron | 30.0% |
| !!! | TCAAATGCTCTTAGTTTTGT+AGG | - | chr3.3:4535969-4535988 | MS.gene56248:intron | 30.0% |
| !!! | TTGAACTTTGTTTTCTTTGC+AGG | - | chr3.3:4534426-4534445 | MS.gene56248:intron | 30.0% |
| !!! | TTTTAAAATGACATGACGGA+GGG | - | chr3.3:4535337-4535356 | MS.gene56248:intron | 30.0% |
| AAATTGTGCGAGAGAAAAGT+TGG | + | chr3.3:4532874-4532893 | None:intergenic | 35.0% | |
| AAGATATGTCCAAGCACAAA+TGG | - | chr3.3:4536470-4536489 | MS.gene56248:CDS | 35.0% | |
| AAGCTGTGAATTTAGGAAAC+TGG | - | chr3.3:4531771-4531790 | MS.gene56248:CDS | 35.0% | |
| AATACTTGATCCTTCACACT+TGG | + | chr3.3:4536202-4536221 | None:intergenic | 35.0% | |
| ACATAAGAAATGATAGAGCC+GGG | - | chr3.3:4535925-4535944 | MS.gene56248:intron | 35.0% | |
| ACATATCTTTGCGCTGAAAA+TGG | - | chr3.3:4533404-4533423 | MS.gene56248:intron | 35.0% | |
| ACTCAAGGGAAAATGATGAT+AGG | - | chr3.3:4532346-4532365 | MS.gene56248:CDS | 35.0% | |
| ACTTGACAATGCTTTCACAT+GGG | - | chr3.3:4534591-4534610 | MS.gene56248:CDS | 35.0% | |
| AGAGATGGATATACAGAATG+GGG | - | chr3.3:4535168-4535187 | MS.gene56248:intron | 35.0% | |
| AGTAAAAAATCAATTGGCCG+TGG | + | chr3.3:4532407-4532426 | None:intergenic | 35.0% | |
| ATATCTTTGCGCTGAAAATG+GGG | - | chr3.3:4533406-4533425 | MS.gene56248:intron | 35.0% | |
| ATGTTAAGAACTCAGTTGGT+AGG | - | chr3.3:4532257-4532276 | MS.gene56248:intron | 35.0% | |
| CAAGAGATGGATATACAGAA+TGG | - | chr3.3:4535166-4535185 | MS.gene56248:intron | 35.0% | |
| CATATCTTTGCGCTGAAAAT+GGG | - | chr3.3:4533405-4533424 | MS.gene56248:intron | 35.0% | |
| CCAAGTGGATGAACTTATAA+CGG | - | chr3.3:4532606-4532625 | MS.gene56248:CDS | 35.0% | |
| CTATCTTGATTGACACTTAG+TGG | + | chr3.3:4535699-4535718 | None:intergenic | 35.0% | |
| CTTCTTCTCTCATTTGTCAA+AGG | - | chr3.3:4535816-4535835 | MS.gene56248:intron | 35.0% | |
| GCTTACAAAGCTGTGAATTT+AGG | - | chr3.3:4531764-4531783 | MS.gene56248:CDS | 35.0% | |
| GGAGAATACCAACTTACTAA+TGG | - | chr3.3:4534306-4534325 | MS.gene56248:intron | 35.0% | |
| GGAGAATTTGTATGTTGAAC+AGG | + | chr3.3:4532382-4532401 | None:intergenic | 35.0% | |
| GGGTTAAATAATATAGGAGG+AGG | - | chr3.3:4533653-4533672 | MS.gene56248:intron | 35.0% | |
| GTATATTCTCGTGCAACATT+TGG | - | chr3.3:4536495-4536514 | MS.gene56248:CDS | 35.0% | |
| GTGGGGTTAAATAATATAGG+AGG | - | chr3.3:4533650-4533669 | MS.gene56248:intron | 35.0% | |
| GTGTGAAGGATCAAGTATTT+AGG | - | chr3.3:4536203-4536222 | MS.gene56248:intron | 35.0% | |
| GTTGAACACCCTAAAATTGA+AGG | + | chr3.3:4533621-4533640 | None:intergenic | 35.0% | |
| TACTGTTCTATTTAGGGGAA+TGG | - | chr3.3:4536403-4536422 | MS.gene56248:intron | 35.0% | |
| TAGACCAACTAACATTAGCA+AGG | + | chr3.3:4536009-4536028 | None:intergenic | 35.0% | |
| TAGCCTCAAGAACTATTACA+AGG | - | chr3.3:4535716-4535735 | MS.gene56248:intron | 35.0% | |
| TGAAATGTTTCTTGGTTGCT+AGG | + | chr3.3:4533707-4533726 | None:intergenic | 35.0% | |
| TGTGATCATGTCAAATCCAT+TGG | - | chr3.3:4535779-4535798 | MS.gene56248:intron | 35.0% | |
| TTATCGGATGAAACTCATGT+GGG | + | chr3.3:4534044-4534063 | None:intergenic | 35.0% | |
| TTATTCATTGTGACTCATGC+AGG | - | chr3.3:4533978-4533997 | MS.gene56248:CDS | 35.0% | |
| TTTATCGGATGAAACTCATG+TGG | + | chr3.3:4534045-4534064 | None:intergenic | 35.0% | |
| TTTGTGCTTGGACATATCTT+TGG | + | chr3.3:4536470-4536489 | None:intergenic | 35.0% | |
| ! | AGATTATGAGGGCACAAATT+GGG | - | chr3.3:4534233-4534252 | MS.gene56248:intron | 35.0% |
| ! | GTGACTCATCCTTCAATTTT+AGG | - | chr3.3:4533609-4533628 | MS.gene56248:intron | 35.0% |
| ! | TCTCTATCTCTCTGTAGTTT+TGG | - | chr3.3:4535441-4535460 | MS.gene56248:intron | 35.0% |
| ! | TGTTAAGAACTCAGTTGGTA+GGG | - | chr3.3:4532258-4532277 | MS.gene56248:intron | 35.0% |
| ! | TTTGATTTAAAACCGGCCAT+GGG | + | chr3.3:4533251-4533270 | None:intergenic | 35.0% |
| !! | AAAATGGATTAGATGCAGTG+AGG | - | chr3.3:4534497-4534516 | MS.gene56248:intron | 35.0% |
| !! | ATGTGTTTTGTTGTGTGGAA+TGG | + | chr3.3:4532526-4532545 | None:intergenic | 35.0% |
| !! | GCTTTGATTCGAATTTTGAG+GGG | + | chr3.3:4533752-4533771 | None:intergenic | 35.0% |
| !!! | CAAAATGGTTTTGAGCATAG+TGG | - | chr3.3:4535141-4535160 | MS.gene56248:intron | 35.0% |
| !!! | GAGAAGAAGTTTTGAATCTG+TGG | + | chr3.3:4535805-4535824 | None:intergenic | 35.0% |
| AAAAAATCAATTGGCCGTGG+TGG | + | chr3.3:4532404-4532423 | None:intergenic | 40.0% | |
| AAAAATCAATTGGCCGTGGT+GGG | + | chr3.3:4532403-4532422 | None:intergenic | 40.0% | |
| ACATACAAATTCTCCCACCA+CGG | - | chr3.3:4532387-4532406 | MS.gene56248:CDS | 40.0% | |
| ATAACCATTGGAGTCTCAAG+TGG | - | chr3.3:4536547-4536566 | MS.gene56248:CDS | 40.0% | |
| ATCAGTGACTGCAGATTATG+AGG | - | chr3.3:4534221-4534240 | MS.gene56248:intron | 40.0% | |
| ATTCTCGTGCAACATTTGGA+TGG | - | chr3.3:4536499-4536518 | MS.gene56248:CDS | 40.0% | |
| CAAGGGAAAATGATGATAGG+TGG | - | chr3.3:4532349-4532368 | MS.gene56248:CDS | 40.0% | |
| CACTTGACAATGCTTTCACA+TGG | - | chr3.3:4534590-4534609 | MS.gene56248:CDS | 40.0% | |
| CATAAGAAATGATAGAGCCG+GGG | - | chr3.3:4535926-4535945 | MS.gene56248:intron | 40.0% | |
| CCGTTATAAGTTCATCCACT+TGG | + | chr3.3:4532609-4532628 | None:intergenic | 40.0% | |
| CCTTCACACATATATGGTCA+AGG | + | chr3.3:4534188-4534207 | None:intergenic | 40.0% | |
| CCTTGACCATATATGTGTGA+AGG | - | chr3.3:4534185-4534204 | MS.gene56248:intron | 40.0% | |
| CGCCATAACCATTAGTAAGT+TGG | + | chr3.3:4534317-4534336 | None:intergenic | 40.0% | |
| CTCAAGTGGTTGATCGAAAA+TGG | - | chr3.3:4536561-4536580 | MS.gene56248:CDS | 40.0% | |
| CTGCCTTGTAATAGTTCTTG+AGG | + | chr3.3:4535722-4535741 | None:intergenic | 40.0% | |
| GACACTCATTATGAAACGGA+GGG | + | chr3.3:4532762-4532781 | None:intergenic | 40.0% | |
| GCAGTTGAAGGTTCTCAAAA+TGG | - | chr3.3:4535126-4535145 | MS.gene56248:intron | 40.0% | |
| GTTCTATTTAGGGGAATGGA+CGG | - | chr3.3:4536407-4536426 | MS.gene56248:intron | 40.0% | |
| GTTGCTAGGTGAATCTGAAA+AGG | + | chr3.3:4533693-4533712 | None:intergenic | 40.0% | |
| GTTGTGTGGAATGGAACATT+GGG | + | chr3.3:4532517-4532536 | None:intergenic | 40.0% | |
| TATCTTTGCGCTGAAAATGG+GGG | - | chr3.3:4533407-4533426 | MS.gene56248:intron | 40.0% | |
| TCAGTGACTGCAGATTATGA+GGG | - | chr3.3:4534222-4534241 | MS.gene56248:intron | 40.0% | |
| TGACACTCATTATGAAACGG+AGG | + | chr3.3:4532763-4532782 | None:intergenic | 40.0% | |
| TGGACAAAAAGTTTGCCCAT+GGG | - | chr3.3:4533179-4533198 | MS.gene56248:CDS | 40.0% | |
| TGTTGTGTGGAATGGAACAT+TGG | + | chr3.3:4532518-4532537 | None:intergenic | 40.0% | |
| TTCTCGTGCAACATTTGGAT+GGG | - | chr3.3:4536500-4536519 | MS.gene56248:CDS | 40.0% | |
| TTGGACAAAAAGTTTGCCCA+TGG | - | chr3.3:4533178-4533197 | MS.gene56248:CDS | 40.0% | |
| TTGTCTCTCACTAAACCCAT+GGG | + | chr3.3:4533197-4533216 | None:intergenic | 40.0% | |
| TTTCAGCGCAAAGATATGTC+TGG | + | chr3.3:4533403-4533422 | None:intergenic | 40.0% | |
| TTTCTTACCCTCATGACTTG+AGG | + | chr3.3:4534348-4534367 | None:intergenic | 40.0% | |
| TTTGTCTCTCACTAAACCCA+TGG | + | chr3.3:4533198-4533217 | None:intergenic | 40.0% | |
| ! | CAGATTATGAGGGCACAAAT+TGG | - | chr3.3:4534232-4534251 | MS.gene56248:intron | 40.0% |
| ! | GTTTGATTTAAAACCGGCCA+TGG | + | chr3.3:4533252-4533271 | None:intergenic | 40.0% |
| ! | TGTTTTCTTTGCAGGACCAT+TGG | - | chr3.3:4534434-4534453 | MS.gene56248:intron | 40.0% |
| ! | TTCTGGTTGGGAAACATTCA+GGG | - | chr3.3:4533463-4533482 | MS.gene56248:intron | 40.0% |
| ! | TTGATTTAAAACCGGCCATG+GGG | + | chr3.3:4533250-4533269 | None:intergenic | 40.0% |
| ! | TTGTAACTTGCAGTAGGCAT+GGG | - | chr3.3:4535079-4535098 | MS.gene56248:intron | 40.0% |
| ! | TTTGTAACTTGCAGTAGGCA+TGG | - | chr3.3:4535078-4535097 | MS.gene56248:intron | 40.0% |
| !! | ATATGTGTTGTTTAGCCCCA+TGG | - | chr3.3:4533232-4533251 | MS.gene56248:intron | 40.0% |
| !! | CAACATTTGGATGGGCTTTT+TGG | - | chr3.3:4536508-4536527 | MS.gene56248:CDS | 40.0% |
| !! | GGTGTATGTGTTTTGTTGTG+TGG | + | chr3.3:4532531-4532550 | None:intergenic | 40.0% |
| !! | TATTGGCTCATTTGCAGCTT+TGG | - | chr3.3:4533579-4533598 | MS.gene56248:intron | 40.0% |
| !!! | ACATTTTTTTGTGGTGGCAG+AGG | + | chr3.3:4532320-4532339 | None:intergenic | 40.0% |
| !!! | AGTTTTGAATCTGTGGCCAA+TGG | + | chr3.3:4535798-4535817 | None:intergenic | 40.0% |
| ACAATTCCGTCAAAGCGAGA+AGG | + | chr3.3:4531821-4531840 | None:intergenic | 45.0% | |
| ACGTGTCTGTCTATCGTAGT+AGG | + | chr3.3:4532169-4532188 | None:intergenic | 45.0% | |
| AGAGAAACCACTAAGATCCC+CGG | + | chr3.3:4535946-4535965 | None:intergenic | 45.0% | |
| AGGCAGCTTATGATGTTGTG+AGG | - | chr3.3:4535736-4535755 | MS.gene56248:intron | 45.0% | |
| ATAGAGCTCCTCAAGTCATG+AGG | - | chr3.3:4534337-4534356 | MS.gene56248:intron | 45.0% | |
| ATGGAACCTTCTCGCTTTGA+CGG | - | chr3.3:4531812-4531831 | MS.gene56248:CDS | 45.0% | |
| CTGAATGTTTCCCAACCAGA+AGG | + | chr3.3:4533464-4533483 | None:intergenic | 45.0% | |
| GCATGGGATGAAAGTGATTG+TGG | - | chr3.3:4535095-4535114 | MS.gene56248:intron | 45.0% | |
| GTGAATAAGTGAGCTGTCTG+AGG | + | chr3.3:4532445-4532464 | None:intergenic | 45.0% | |
| GTTGCAGTTACCAAGTGTGA+AGG | - | chr3.3:4536189-4536208 | MS.gene56248:intron | 45.0% | |
| TAGAGCTCCTCAAGTCATGA+GGG | - | chr3.3:4534338-4534357 | MS.gene56248:intron | 45.0% | |
| TCAACCACTTGAGACTCCAA+TGG | + | chr3.3:4536554-4536573 | None:intergenic | 45.0% | |
| TCTATGACAGAGACTGTCTG+TGG | + | chr3.3:4535207-4535226 | None:intergenic | 45.0% | |
| ! | AACCCACCTAAGCCTTTTGT+TGG | - | chr3.3:4534553-4534572 | MS.gene56248:CDS | 45.0% |
| ! | ACCCACCTAAGCCTTTTGTT+GGG | - | chr3.3:4534554-4534573 | MS.gene56248:CDS | 45.0% |
| ! | CTTCTGGTTGGGAAACATTC+AGG | - | chr3.3:4533462-4533481 | MS.gene56248:intron | 45.0% |
| ! | GAGCATAGTGGAACAAGAGA+TGG | - | chr3.3:4535153-4535172 | MS.gene56248:intron | 45.0% |
| ! | TAAGCAAACGAAAGAGCGTG+AGG | + | chr3.3:4531749-4531768 | None:intergenic | 45.0% |
| !!! | ATAATATAATATAATAGTTT+TGG | + | chr3.3:4532020-4532039 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTACTATTTA+TGG | + | chr3.3:4535294-4535313 | None:intergenic | 5.0% |
| ACCAGAAGGTGAACTACGGT+CGG | + | chr3.3:4533450-4533469 | None:intergenic | 50.0% | |
| ACCGTAGTTCACCTTCTGGT+TGG | - | chr3.3:4533450-4533469 | MS.gene56248:intron | 50.0% | |
| ACGGCTGAATGGAGCATACA+AGG | - | chr3.3:4536426-4536445 | MS.gene56248:intron | 50.0% | |
| CAGTGAGGATACCTGTTGGA+TGG | - | chr3.3:4534512-4534531 | MS.gene56248:CDS | 50.0% | |
| CCCAACCAGAAGGTGAACTA+CGG | + | chr3.3:4533454-4533473 | None:intergenic | 50.0% | |
| CCCCAACAAAAGGCTTAGGT+GGG | + | chr3.3:4534558-4534577 | None:intergenic | 50.0% | |
| GATGCAGTGAGGATACCTGT+TGG | - | chr3.3:4534508-4534527 | MS.gene56248:CDS | 50.0% | |
| GTGGACTTGCATGCAGTTGA+AGG | - | chr3.3:4535114-4535133 | MS.gene56248:intron | 50.0% | |
| TGAGCTATCCACCATCCAAC+AGG | + | chr3.3:4534526-4534545 | None:intergenic | 50.0% | |
| TGAGGATACCTGTTGGATGG+TGG | - | chr3.3:4534515-4534534 | MS.gene56248:CDS | 50.0% | |
| TGGCAGAGGTTTGAACCCTA+AGG | + | chr3.3:4532306-4532325 | None:intergenic | 50.0% | |
| ! | CCACCTAAGCCTTTTGTTGG+GGG | - | chr3.3:4534556-4534575 | MS.gene56248:CDS | 50.0% |
| ! | CCCACCTAAGCCTTTTGTTG+GGG | - | chr3.3:4534555-4534574 | MS.gene56248:CDS | 50.0% |
| ! | CCGTAGTTCACCTTCTGGTT+GGG | - | chr3.3:4533451-4533470 | MS.gene56248:intron | 50.0% |
| ! | GCTTGTTGCTGAAGGATGGA+TGG | - | chr3.3:4531793-4531812 | MS.gene56248:CDS | 50.0% |
| ! | TGGCTCATTTGCAGCTTTGG+AGG | - | chr3.3:4533582-4533601 | MS.gene56248:intron | 50.0% |
| !! | ACTGGCTTGTTGCTGAAGGA+TGG | - | chr3.3:4531789-4531808 | MS.gene56248:CDS | 50.0% |
| !! | GGAAACTGGCTTGTTGCTGA+AGG | - | chr3.3:4531785-4531804 | MS.gene56248:CDS | 50.0% |
| !! | GGCTCATTTGCAGCTTTGGA+GGG | - | chr3.3:4533583-4533602 | MS.gene56248:intron | 50.0% |
| CCCCCAACAAAAGGCTTAGG+TGG | + | chr3.3:4534559-4534578 | None:intergenic | 55.0% | |
| CTTTGCGCTGAAAATGGGGG+AGG | - | chr3.3:4533410-4533429 | MS.gene56248:intron | 55.0% | |
| GATAGAGCCGGGGATCTTAG+TGG | - | chr3.3:4535936-4535955 | MS.gene56248:intron | 55.0% | |
| GCCAAAGCTCCCCCAACAAA+AGG | + | chr3.3:4534568-4534587 | None:intergenic | 55.0% | |
| GCTCCCCCAACAAAAGGCTT+AGG | + | chr3.3:4534562-4534581 | None:intergenic | 55.0% | |
| TAGGGGAATGGACGGCTGAA+TGG | - | chr3.3:4536415-4536434 | MS.gene56248:intron | 55.0% | |
| ! | GCCTTTTGTTGGGGGAGCTT+TGG | - | chr3.3:4534564-4534583 | MS.gene56248:CDS | 55.0% |
| !! | GTGTTGTTTAGCCCCATGGC+CGG | - | chr3.3:4533236-4533255 | MS.gene56248:intron | 55.0% |
| GCCGACCGTAGTTCACCTTC+TGG | - | chr3.3:4533446-4533465 | MS.gene56248:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4531692 | 4536599 | 4531692 | ID=MS.gene56248 |
| chr3.3 | mRNA | 4531692 | 4536599 | 4531692 | ID=MS.gene56248.t1;Parent=MS.gene56248 |
| chr3.3 | exon | 4536435 | 4536599 | 4536435 | ID=MS.gene56248.t1.exon1;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4536435 | 4536599 | 4536435 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4534807 | 4534926 | 4534807 | ID=MS.gene56248.t1.exon2;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4534807 | 4534926 | 4534807 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4534498 | 4534695 | 4534498 | ID=MS.gene56248.t1.exon3;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4534498 | 4534695 | 4534498 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4533932 | 4534084 | 4533932 | ID=MS.gene56248.t1.exon4;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4533932 | 4534084 | 4533932 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4533674 | 4533843 | 4533674 | ID=MS.gene56248.t1.exon5;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4533674 | 4533843 | 4533674 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4533050 | 4533199 | 4533050 | ID=MS.gene56248.t1.exon6;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4533050 | 4533199 | 4533050 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4532301 | 4532641 | 4532301 | ID=MS.gene56248.t1.exon7;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4532301 | 4532641 | 4532301 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| chr3.3 | exon | 4531692 | 4531873 | 4531692 | ID=MS.gene56248.t1.exon8;Parent=MS.gene56248.t1 |
| chr3.3 | CDS | 4531692 | 4531873 | 4531692 | ID=cds.MS.gene56248.t1;Parent=MS.gene56248.t1 |
| Gene Sequence |
| Protein sequence |
