AlfalfaGEDB | MS.gene056899

M. sativa cultivar XinJiangDaYe / MS.gene056899

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056899.t1	RHN61054.1	98.1	52	1	0	1	52	1	52	9.30E-21	112.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056899.t1	A0A072UKI5	98.1	52	1	0	1	52	1	52	6.7e-21	112.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049134	MS.gene056899	0.806187	9.29E-50	-1.69E-46
MS.gene049149	MS.gene056899	-0.801897	7.25E-49	-1.69E-46
MS.gene049150	MS.gene056899	-0.805823	1.11E-49	-1.69E-46
MS.gene049153	MS.gene056899	-0.809381	1.95E-50	-1.69E-46
MS.gene049758	MS.gene056899	-0.806176	9.34E-50	-1.69E-46
MS.gene049993	MS.gene056899	-0.847693	9.84E-60	-1.69E-46
MS.gene050133	MS.gene056899	0.808231	3.43E-50	-1.69E-46
MS.gene050301	MS.gene056899	-0.808195	3.49E-50	-1.69E-46
MS.gene050397	MS.gene056899	-0.83108	2.04E-55	-1.69E-46
MS.gene050406	MS.gene056899	-0.818813	1.61E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056899.t1	MTR_4g065060	90.802	424	23	3	1	424	1	408	2.28e-58	203
MS.gene056899.t1	MTR_4g065060	97.288	295	8	0	146	440	114	408	1.32e-18	89.4
MS.gene056899.t1	MTR_4g065060	97.153	281	8	0	178	458	114	394	3.81e-18	88.2
MS.gene056899.t1	MTR_4g065060	96.271	295	10	1	226	519	114	408	5.61e-17	84.3
MS.gene056899.t1	MTR_4g065060	96.271	295	10	1	194	487	114	408	7.07e-17	84.3
MS.gene056899.t1	MTR_4g065060	96.786	280	8	1	242	520	114	393	1.93e-16	82.8
MS.gene056899.t1	MTR_4g065060	95.374	281	12	1	258	537	114	394	2.25e-14	76.3
MS.gene056899.t1	MTR_4g065060	84.054	370	10	2	290	610	114	483	4.93e-14	75.1
MS.gene056899.t1	MTR_4g065093	87.838	370	10	3	1	346	1	359	1.64e-49	178
MS.gene056899.t1	MTR_0879s0010	99.259	135	1	0	129	263	25	159	8.00e-48	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 334 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGGAACCTCAATT+GGG	0.488179	4.2:+40078108	None:intergenic
AACATATGGAGGAGGAGGAG+AGG	0.472004	4.2:-40078450	None:intergenic
AACATATGGTGGAGGAGGAG+AGG	0.509273	4.2:-40079503	None:intergenic
AAGTAGGGATGATATGGAGG+AGG	0.531483	4.2:-40079892	None:intergenic
ACATAGGGAGGTGGTGGTGA+TGG	0.431913	4.2:-40078332	None:intergenic
ACATAGGGTGGAGGAGGTGA+AGG	0.416691	4.2:-40079694	None:intergenic
ACATATGGAGGAGGAGGAGA+GGG	0.445616	4.2:-40078449	None:intergenic
ACATATGGAGGAGGAGGTGA+AGG	0.385781	4.2:-40078593	None:intergenic
ACATATGGAGGAGGAGGTGA+AGG	0.385781	4.2:-40078785	None:intergenic
ACATATGGAGGAGGAGGTGA+AGG	0.385781	4.2:-40079169	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGTAAACATATGGAGGT+GGG	-	chr4.2:40079657-40079676	None:intergenic	30.0%
GACTTGTAAATATATGGAAG+TGG	-	chr4.2:40079229-40079248	None:intergenic	30.0%
GATGATTATAAGCCTTACTA+CGG	+	chr4.2:40078197-40078216	MS.gene056899:CDS	30.0%
TTGTAAATATATGGAAGTGG+TGG	-	chr4.2:40079226-40079245	None:intergenic	30.0%
ACTCTTATAGACATATGGTG+GGG	-	chr4.2:40078846-40078865	None:intergenic	35.0%
GACTCTTATAGACATATGGT+GGG	-	chr4.2:40078847-40078866	None:intergenic	35.0%
GACTTATAAATGTATGGAGG+TGG	-	chr4.2:40079562-40079581	None:intergenic	35.0%
GACTTATATACATATGGTGG+AGG	-	chr4.2:40078701-40078720	None:intergenic	35.0%
GACTTGTAAATATAAGGAGG+AGG	-	chr4.2:40079850-40079869	None:intergenic	35.0%
GACTTGTAAATATATGGTGG+GGG	-	chr4.2:40078749-40078768	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	40078113	40079945	40078113	ID=MS.gene056899
chr4.2	mRNA	40078113	40079945	40078113	ID=MS.gene056899.t1;Parent=MS.gene056899
chr4.2	exon	40078113	40079945	40078113	ID=MS.gene056899.t1.exon1;Parent=MS.gene056899.t1
chr4.2	CDS	40078113	40079945	40078113	ID=cds.MS.gene056899.t1;Parent=MS.gene056899.t1

Gene Sequence

>MS.gene056899

ATGGGAACCTCAATTGGGTTGAGGCACTTGCCTCAACTCATCTACGCAATAGCATTTTGCGTAATTGCAAGTAGTGTCGCTGCTGATGATTATAAGCCTTACTACGGTGGCCAACCAAACAACAACTATCCACAACCAACACCACCAAGTCATGGACAGCAGCCACCGTATTATTTCAAATCACCTCCATATTACTACAAGTCCCCGCCTCCATCATCTCCATCACCACCACCTCCCTATGTCCACAAATACCCACCATATTACTACAAACCTCCCCCTCCACCATCTCCCTCACCACCACCTCCATATGTGTACAAGTCCCCACCACCTCCATCTCCCTCTCCTCCTCCTCCATATGTTTACAAGTCACCACCTCCTCCATCTCCTTCCCCTCCCCCGCCATATGTCTATAAGAGTCCACCACCACCATCTCCCTCACCTCCCCCACCCTATGTCTACAAGTCACCACCACCTCCATCCCCTTCACCTCCTCCTCCATATGTCTACAAGTCACCACCTCCACCATCCCCATCTCCACCACCTCCATATGTCTACAAATCTCCACCACCACCATCACCTTCACCCCCTCCACCATATGTATATAAGTCACCACCCCCTCCATCTCCTTCTCCTCCCCCACCATATATTTACAAGTCACCACCTCCACCATCCCCTTCACCTCCTCCTCCATATGTCTACAAGTCACCACCTCCTCCATCTCCTTCACCTCCCCCACCATATGTCTATAAGAGTCCACCACCACCCTCTCCATCACCACCACCTCCATATGTCTACAAGTCTCCTCCTCCACCATCACCCTCACCTCCCCCACCATATGTTTACAAGTCACCACCACCTCCATCCCCTTCACCTCCTCCTCCATACGTCTACAAGTCACCACCTCCTCCATCTCCTTCACCTCCTCCACCATATGTCTATAAGAGTCCACCACCACCCTCTCAATCACCACCACCTCCATATCTCTACAAGTCTCCTCCTCCACCATCACCCTCACCTCCCCCACCCTATGTCTACAAGTCACCACCACCTCCATCCCCTTCACCTCCTCCTCCATATGTCTACAAGTCACCACCTCCACCATCCCCATCTCCACCACTTCCATATATTTACAAGTCCCCTCCACCACCGTCACCTTCACCCCCTCCACCATATATATACAAGTCCCCACCCCCACCATCACCTTCTCCTCCCCCACCCTATGTGTATAAGTCGCCACCACCTCCATCTCCTTCACCTCCTCCTCCATATGTCTACAAGTCACCACCTCCACCGTCCCCATCTCCACCACCTCCATATGTCTACAAATCTCCACCCCCACCATCACCTTCACCCCCTCCACCATATGTATATAAGTCACCTCCTCCATCTCCCTCTCCTCCTCCACCATATGTTTACAAGTCACCACCTCCACCGTCTCCATCCCCACCACCTCCATACATTTATAAGTCTCCTCCTCCACCATCCCCTTCACCACCCCCTCCATATGTCTATAAGTCCCCTCCTCCTCCTTCTCCTTCACCCCCACCTCCATATGTTTACATATCTCCACCCCCACCATCTCCTTCACCTCCTCCACCCTATGTCTATAAGTCACCACCACCTCCTTCACCTTCACCGCCTCCTCCATACTATTACAAATCTCCACCACTGCCTTCTCCATCACCTCCTCCACCATATGTCTATAAGTCACCGCCACCTCCTTCGCCTTCACCACCTCCTCCTTATATTTACAAGTCTCCACCTCCACCATCTCCATCACCTCCTCCATATCATCCCTACTTCTACAACTCACCGCCGCCTCCCGTCTATTAA

Protein sequence

>MS.gene056899.t1

MGTSIGLRHLPQLIYAIAFCVIASSVAADDYKPYYGGQPNNNYPQPTPPSHGQQPPYYFKSPPYYYKSPPPSSPSPPPPYVHKYPPYYYKPPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSQSPPPPYLYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPLPYIYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYISPPPPSPSPPPPYVYKSPPPPSPSPPPPYYYKSPPLPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPYHPYFYNSPPPPVY