Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56407.t1 | XP_024636564.1 | 98.6 | 147 | 2 | 0 | 1 | 147 | 1 | 147 | 5.80E-78 | 300.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56407.t1 | Q941A6 | 67.6 | 139 | 41 | 1 | 10 | 144 | 4 | 142 | 5.5e-53 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56407.t1 | I3SYS2 | 98.6 | 147 | 2 | 0 | 1 | 147 | 1 | 147 | 4.2e-78 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059509 | MS.gene56407 | 0.928071 | 4.84E-92 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56407.t1 | MTR_4g084320 | 98.639 | 147 | 2 | 0 | 1 | 147 | 55 | 201 | 9.07e-106 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56407.t1 | AT1G08480 | 69.466 | 131 | 40 | 0 | 14 | 144 | 12 | 142 | 5.36e-69 | 205 |
Find 37 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTGAGGCTAAGTTTC+TGG | 0.132479 | 4.4:-28645298 | MS.gene56407:CDS |
| ATTCGTCTTCCCAGTCATTT+TGG | 0.169810 | 4.4:-28649203 | MS.gene56407:CDS |
| ATCATGCACTTCAACTTTAC+AGG | 0.238941 | 4.4:-28645332 | MS.gene56407:CDS |
| ATCGCTTCTGATCCTGTTCA+TGG | 0.253430 | 4.4:-28649066 | MS.gene56407:CDS |
| CTTGGTGAAGTTGGAATAAT+TGG | 0.263649 | 4.4:+28649137 | None:intergenic |
| GGGAAGGCTACAAAGAGTTT+TGG | 0.278082 | 4.4:-28649182 | MS.gene56407:CDS |
| AAATACACCTCCAGCTAAAA+AGG | 0.286066 | 4.4:+28645383 | None:intergenic |
| GTGATAAGCCCCTCACTTCA+TGG | 0.377665 | 4.4:-28649113 | MS.gene56407:CDS |
| GCAGTGCAATATGGTCTTGC+AGG | 0.377833 | 4.4:-28645696 | MS.gene56407:CDS |
| GGTCTTGCAGGAAGTGCTTT+GGG | 0.386470 | 4.4:-28645684 | MS.gene56407:CDS |
| GTTGGAATAATTGGTCATAA+AGG | 0.404341 | 4.4:+28649146 | None:intergenic |
| CTTATCACGCTTGGTGAAGT+TGG | 0.419972 | 4.4:+28649128 | None:intergenic |
| TGGTCTTGCAGGAAGTGCTT+TGG | 0.428188 | 4.4:-28645685 | MS.gene56407:CDS |
| ACAGCTTCAATTCCCTCCTT+CGG | 0.445398 | 4.4:+28645257 | None:intergenic |
| GGTGTATTTGGGTGGACATA+TGG | 0.445640 | 4.4:-28645369 | MS.gene56407:CDS |
| GTTACCACGGGTCCATGAAC+AGG | 0.451033 | 4.4:+28649054 | None:intergenic |
| GCTAGAGAAGCAGTGCAATA+TGG | 0.455581 | 4.4:-28645705 | MS.gene56407:CDS |
| TGTAGCCTTCCCAAAATGAC+TGG | 0.475890 | 4.4:+28649193 | None:intergenic |
| AGTTTCTGGAGTGGTGGAAA+AGG | 0.517098 | 4.4:-28645284 | MS.gene56407:CDS |
| TAGCTGGAGGTGTATTTGGG+TGG | 0.524323 | 4.4:-28645377 | MS.gene56407:CDS |
| AAATATTCAAGGAGTTTACA+TGG | 0.544388 | 4.4:-28645633 | MS.gene56407:intron |
| ACTTTACAGGGTAGACACAT+TGG | 0.564264 | 4.4:-28645319 | MS.gene56407:CDS |
| AGTGAGGGGCTTATCACGCT+TGG | 0.564366 | 4.4:+28649119 | None:intergenic |
| GGTAGACACATTGGCTTCTG+AGG | 0.581406 | 4.4:-28645310 | MS.gene56407:CDS |
| AGGCTAAGTTTCTGGAGTGG+TGG | 0.583207 | 4.4:-28645290 | MS.gene56407:CDS |
| AGAGTTAGACCATGAAGTGA+GGG | 0.583758 | 4.4:+28649104 | None:intergenic |
| CTGAGGCTAAGTTTCTGGAG+TGG | 0.585312 | 4.4:-28645293 | MS.gene56407:CDS |
| TCATGCACTTCAACTTTACA+GGG | 0.597628 | 4.4:-28645331 | MS.gene56407:CDS |
| ATATTTCCATGCAAAACTTG+CGG | 0.611503 | 4.4:+28645650 | None:intergenic |
| TGGAAAAGGAAGACCGAAGG+AGG | 0.614633 | 4.4:-28645270 | MS.gene56407:CDS |
| GTAGCCTTCCCAAAATGACT+GGG | 0.617092 | 4.4:+28649194 | None:intergenic |
| ATGGTCTAACTCTGATGTTG+AGG | 0.618270 | 4.4:-28649094 | MS.gene56407:CDS |
| CAGAGTTAGACCATGAAGTG+AGG | 0.623061 | 4.4:+28649103 | None:intergenic |
| TGATCCTGTTCATGGACCCG+TGG | 0.624228 | 4.4:-28649058 | MS.gene56407:intron |
| GGAAAAGGAAGACCGAAGGA+GGG | 0.642478 | 4.4:-28645269 | MS.gene56407:CDS |
| TGGTGGAAAAGGAAGACCGA+AGG | 0.651293 | 4.4:-28645273 | MS.gene56407:CDS |
| GAGTTAGACCATGAAGTGAG+GGG | 0.691408 | 4.4:+28649105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAGAAAAATAAATAAA+TGG | + | chr4.4:28647929-28647948 | None:intergenic | 10.0% |
| !! | TTTATTTATATTTGTAAAAG+AGG | + | chr4.4:28648661-28648680 | None:intergenic | 10.0% |
| !!! | TTATTTTACAATATCATTTA+CGG | - | chr4.4:28646159-28646178 | MS.gene56407:intron | 10.0% |
| !!! | TTTTATTAGAAAAAATAGAA+CGG | - | chr4.4:28646336-28646355 | MS.gene56407:intron | 10.0% |
| !! | ACAATTATTAAAGAAAATAC+TGG | + | chr4.4:28647633-28647652 | None:intergenic | 15.0% |
| !! | ACATATGAAACAAAAAAAAT+AGG | + | chr4.4:28648502-28648521 | None:intergenic | 15.0% |
| !! | ATATAGATTAAAATTTCTTG+TGG | - | chr4.4:28646622-28646641 | MS.gene56407:intron | 15.0% |
| !! | CAATTATTAAAGAAAATACT+GGG | + | chr4.4:28647632-28647651 | None:intergenic | 15.0% |
| !! | CATATGAAACAAAAAAAATA+GGG | + | chr4.4:28648501-28648520 | None:intergenic | 15.0% |
| !! | TAATATTTCATTTGGAAAAA+TGG | - | chr4.4:28646076-28646095 | MS.gene56407:intron | 15.0% |
| !!! | AAATTGTTTTAGATTATATG+AGG | - | chr4.4:28645748-28645767 | MS.gene56407:intron | 15.0% |
| !!! | TAAAACAATTTTAATCAAGA+AGG | + | chr4.4:28645739-28645758 | None:intergenic | 15.0% |
| !!! | TATCTATTTTGTTGTTAAAT+TGG | - | chr4.4:28645965-28645984 | MS.gene56407:intron | 15.0% |
| !!! | TTTGTTTAATTTTTCTCATT+TGG | + | chr4.4:28648278-28648297 | None:intergenic | 15.0% |
| !! | CACATTTCAAATAAAAGTAA+AGG | + | chr4.4:28646248-28646267 | None:intergenic | 20.0% |
| !! | CATATGTGATTATTCATATT+TGG | - | chr4.4:28648515-28648534 | MS.gene56407:intron | 20.0% |
| !! | CTTTCCTAAACTTAAATAAA+TGG | - | chr4.4:28647095-28647114 | MS.gene56407:intron | 20.0% |
| !! | TAAATGGAAAGTTAGAAATA+TGG | + | chr4.4:28647913-28647932 | None:intergenic | 20.0% |
| !! | TACTTAAAACATATGACTTA+TGG | - | chr4.4:28647766-28647785 | MS.gene56407:intron | 20.0% |
| !! | TAGTAAATTATTGTCTTAGA+TGG | + | chr4.4:28647580-28647599 | None:intergenic | 20.0% |
| !! | TATACTTTGCTTGAATATAA+TGG | - | chr4.4:28647691-28647710 | MS.gene56407:intron | 20.0% |
| !!! | AATAGCATTTCATTTTACAT+AGG | + | chr4.4:28646689-28646708 | None:intergenic | 20.0% |
| !!! | ATACTTTAGTTTCTCTTATT+TGG | - | chr4.4:28647857-28647876 | MS.gene56407:intron | 20.0% |
| !!! | GACAATAATTTACTATTTTG+CGG | - | chr4.4:28647585-28647604 | MS.gene56407:intron | 20.0% |
| !!! | GTCAAAATATATTTTGATAG+AGG | + | chr4.4:28646128-28646147 | None:intergenic | 20.0% |
| !!! | TAATTACTCAATTTTGAGTT+GGG | - | chr4.4:28647183-28647202 | MS.gene56407:intron | 20.0% |
| !!! | TACTTTAGTTTCTCTTATTT+GGG | - | chr4.4:28647858-28647877 | MS.gene56407:intron | 20.0% |
| !!! | TAGTTTGAAATTTATACACT+TGG | - | chr4.4:28646016-28646035 | MS.gene56407:intron | 20.0% |
| !!! | TTATTGTTTTACTATTCAAC+AGG | - | chr4.4:28649068-28649087 | MS.gene56407:CDS | 20.0% |
| !!! | TTGCTTTTCATTTATTTTTC+AGG | - | chr4.4:28646720-28646739 | MS.gene56407:intron | 20.0% |
| ! | AAAATTAGTTAGACCAATGA+AGG | - | chr4.4:28646396-28646415 | MS.gene56407:intron | 25.0% |
| ! | AAATATTCAAGGAGTTTACA+TGG | - | chr4.4:28648852-28648871 | MS.gene56407:intron | 25.0% |
| ! | AATTCATTATCATGTAAAGC+TGG | - | chr4.4:28647422-28647441 | MS.gene56407:intron | 25.0% |
| ! | AGATAAATCTTAGACATAGA+TGG | + | chr4.4:28647890-28647909 | None:intergenic | 25.0% |
| ! | ATTCAAGCAAAGTATATGAA+AGG | + | chr4.4:28647687-28647706 | None:intergenic | 25.0% |
| ! | CTAATCAAAATCAAACAACA+TGG | + | chr4.4:28646503-28646522 | None:intergenic | 25.0% |
| ! | GAAAAATGGTGTGATTAAAA+TGG | - | chr4.4:28646090-28646109 | MS.gene56407:intron | 25.0% |
| ! | TAAAAAGAGCAACTTTACAT+TGG | + | chr4.4:28648438-28648457 | None:intergenic | 25.0% |
| ! | TACACATGATAAACAATTTG+TGG | + | chr4.4:28647384-28647403 | None:intergenic | 25.0% |
| ! | TAGCATTTGCCAAAAAAATA+TGG | + | chr4.4:28648316-28648335 | None:intergenic | 25.0% |
| ! | TATGTTGGATTTCTTAATGT+CGG | - | chr4.4:28646052-28646071 | MS.gene56407:intron | 25.0% |
| ! | TTGCAAAATGATCAATAAAC+TGG | - | chr4.4:28648196-28648215 | MS.gene56407:intron | 25.0% |
| ! | TTGTAAAATAACAGTCTTCA+TGG | + | chr4.4:28646150-28646169 | None:intergenic | 25.0% |
| ! | TTTCTCATTTGGAAAGATTT+GGG | + | chr4.4:28648267-28648286 | None:intergenic | 25.0% |
| !! | AATAATCAAGAGAGATTTTG+CGG | + | chr4.4:28647456-28647475 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTGCTCTTTTT+AGG | - | chr4.4:28648437-28648456 | MS.gene56407:intron | 25.0% |
| !! | ATGTCGGTTAATATTTCATT+TGG | - | chr4.4:28646068-28646087 | MS.gene56407:intron | 25.0% |
| !! | CTATGATTTAGAGTATATCT+CGG | - | chr4.4:28645607-28645626 | MS.gene56407:intron | 25.0% |
| !! | GATCATTTTGCAATAGAATT+AGG | + | chr4.4:28648189-28648208 | None:intergenic | 25.0% |
| !! | TGGTCCATTTATTTAAGTTT+AGG | + | chr4.4:28647102-28647121 | None:intergenic | 25.0% |
| !! | TTTTCTCATTTGGAAAGATT+TGG | + | chr4.4:28648268-28648287 | None:intergenic | 25.0% |
| !!! | AATGGACAACCATATTTTTT+TGG | - | chr4.4:28648304-28648323 | MS.gene56407:intron | 25.0% |
| !!! | CTCCATCTATTTTTAACTAA+CGG | - | chr4.4:28647498-28647517 | MS.gene56407:intron | 25.0% |
| !!! | GACATAGTTTTAATAAGAGA+AGG | + | chr4.4:28647953-28647972 | None:intergenic | 25.0% |
| !!! | GTAATTACTCAATTTTGAGT+TGG | - | chr4.4:28647182-28647201 | MS.gene56407:intron | 25.0% |
| !!! | TAATTTTTCGACAAAGTTCA+AGG | + | chr4.4:28646383-28646402 | None:intergenic | 25.0% |
| !!! | TGTTTTAGATTATATGAGGA+TGG | - | chr4.4:28645752-28645771 | MS.gene56407:intron | 25.0% |
| !!! | TTTATTTTTCAGGTCAACTA+TGG | - | chr4.4:28646730-28646749 | MS.gene56407:intron | 25.0% |
| !!! | TTTTGGGTTTTTTTTCTTTG+CGG | - | chr4.4:28645830-28645849 | MS.gene56407:intron | 25.0% |
| AAACAGCTATTGAGAAAGAA+AGG | + | chr4.4:28648591-28648610 | None:intergenic | 30.0% | |
| AAAGAGAAAAGGATGAGAAA+AGG | + | chr4.4:28648637-28648656 | None:intergenic | 30.0% | |
| AAGCAAAGTATATGAAAGGA+AGG | + | chr4.4:28647683-28647702 | None:intergenic | 30.0% | |
| AATGCAGAAACGATATGAAA+AGG | + | chr4.4:28645469-28645488 | None:intergenic | 30.0% | |
| ACAACGATTATGTAAGTATG+TGG | - | chr4.4:28646978-28646997 | MS.gene56407:intron | 30.0% | |
| ACATCCATGATGATATCTAA+AGG | + | chr4.4:28647275-28647294 | None:intergenic | 30.0% | |
| ACATCCTTTAGATATCATCA+TGG | - | chr4.4:28647268-28647287 | MS.gene56407:intron | 30.0% | |
| ACATTAAAACCGATGTATGT+CGG | + | chr4.4:28647327-28647346 | None:intergenic | 30.0% | |
| AGAAATCCAACATAAAGAAG+TGG | + | chr4.4:28646046-28646065 | None:intergenic | 30.0% | |
| ATAGTGCACGTATAGTTATA+GGG | - | chr4.4:28648063-28648082 | MS.gene56407:intron | 30.0% | |
| ATATTTCCATGCAAAACTTG+CGG | + | chr4.4:28648838-28648857 | None:intergenic | 30.0% | |
| ATGTATTGTGTAAACACGAA+AGG | + | chr4.4:28645922-28645941 | None:intergenic | 30.0% | |
| ATGTCTATATCATCAATCCA+GGG | + | chr4.4:28646662-28646681 | None:intergenic | 30.0% | |
| CAAAACTACAAGATCAACAA+TGG | + | chr4.4:28648688-28648707 | None:intergenic | 30.0% | |
| CAACGATTATGTAAGTATGT+GGG | - | chr4.4:28646979-28646998 | MS.gene56407:intron | 30.0% | |
| GATAAACAATTTGTGGTTGT+TGG | + | chr4.4:28647377-28647396 | None:intergenic | 30.0% | |
| GATATGAAAAGGTGAAAGAA+TGG | + | chr4.4:28645458-28645477 | None:intergenic | 30.0% | |
| GATGTTTAGGCATAGTAAAA+GGG | + | chr4.4:28648909-28648928 | None:intergenic | 30.0% | |
| GGTGTGATTAAAATGGTATA+TGG | - | chr4.4:28646097-28646116 | MS.gene56407:intron | 30.0% | |
| GTAAAAGAGGAAAAGAGAAA+AGG | + | chr4.4:28648648-28648667 | None:intergenic | 30.0% | |
| GTACATGAAATACTTTCGTA+CGG | + | chr4.4:28649020-28649039 | None:intergenic | 30.0% | |
| GTCCGTTAGTTAAAAATAGA+TGG | + | chr4.4:28647503-28647522 | None:intergenic | 30.0% | |
| GTTGGAATAATTGGTCATAA+AGG | + | chr4.4:28645342-28645361 | None:intergenic | 30.0% | |
| TAAACATCATCATCGTATGA+AGG | - | chr4.4:28648921-28648940 | MS.gene56407:intron | 30.0% | |
| TAGCTAGCATATGGTTTATA+GGG | - | chr4.4:28645543-28645562 | MS.gene56407:intron | 30.0% | |
| TATAACTATACGTGCACTAT+GGG | + | chr4.4:28648063-28648082 | None:intergenic | 30.0% | |
| TATCACTGGACAATAATAGA+TGG | + | chr4.4:28645892-28645911 | None:intergenic | 30.0% | |
| TATGGTTTATAGGGTTTGAT+TGG | - | chr4.4:28645552-28645571 | MS.gene56407:intron | 30.0% | |
| TGATGTTTAGGCATAGTAAA+AGG | + | chr4.4:28648910-28648929 | None:intergenic | 30.0% | |
| TTAGATAGAATCCACTTGTT+TGG | - | chr4.4:28646897-28646916 | MS.gene56407:intron | 30.0% | |
| TTAGCTAGCATATGGTTTAT+AGG | - | chr4.4:28645542-28645561 | MS.gene56407:intron | 30.0% | |
| TTCTACCTGAAGTTTAATGT+AGG | - | chr4.4:28648980-28648999 | MS.gene56407:intron | 30.0% | |
| TTGCACTTAGCACTATTATT+TGG | - | chr4.4:28646451-28646470 | MS.gene56407:intron | 30.0% | |
| ! | ATTTAGAGTATATCTCGGTT+AGG | - | chr4.4:28645612-28645631 | MS.gene56407:intron | 30.0% |
| ! | CAATAAACTGGACATGTTTT+CGG | - | chr4.4:28648208-28648227 | MS.gene56407:intron | 30.0% |
| ! | CTACTATTTCTTCTTGCATA+TGG | - | chr4.4:28646563-28646582 | MS.gene56407:intron | 30.0% |
| ! | GATATGATGTCTAAAATGTC+TGG | - | chr4.4:28646588-28646607 | MS.gene56407:intron | 30.0% |
| ! | GGCATGTTTTCATCAATAAA+AGG | + | chr4.4:28646289-28646308 | None:intergenic | 30.0% |
| ! | GTTTTGCATGGAAATATTCA+AGG | - | chr4.4:28648841-28648860 | MS.gene56407:intron | 30.0% |
| ! | TAGTTTTTCCCTTCAGAAAA+GGG | + | chr4.4:28646926-28646945 | None:intergenic | 30.0% |
| ! | TTCATACGATGATGATGTTT+AGG | + | chr4.4:28648922-28648941 | None:intergenic | 30.0% |
| ! | TTTAGTTTCTCTTATTTGGG+TGG | - | chr4.4:28647861-28647880 | MS.gene56407:intron | 30.0% |
| ! | TTTTAAGCTGAAATGGGAAA+AGG | + | chr4.4:28648758-28648777 | None:intergenic | 30.0% |
| !!! | TAGCAGTTTTAAGCTGAAAT+GGG | + | chr4.4:28648764-28648783 | None:intergenic | 30.0% |
| AAATACACCTCCAGCTAAAA+AGG | + | chr4.4:28649105-28649124 | None:intergenic | 35.0% | |
| AACCCAAAATTTCCATAAGC+TGG | + | chr4.4:28645819-28645838 | None:intergenic | 35.0% | |
| AAGTCCATCATCCAAAATGA+TGG | + | chr4.4:28647742-28647761 | None:intergenic | 35.0% | |
| ACTTGCAAATACTACTATCC+CGG | + | chr4.4:28645682-28645701 | None:intergenic | 35.0% | |
| ATAGGGTTTGATTGGTAGAA+AGG | - | chr4.4:28645560-28645579 | MS.gene56407:intron | 35.0% | |
| ATCATGCACTTCAACTTTAC+AGG | - | chr4.4:28649153-28649172 | MS.gene56407:CDS | 35.0% | |
| CAAAGCCTACATTAAACTTC+AGG | + | chr4.4:28648988-28649007 | None:intergenic | 35.0% | |
| CATAGTGCACGTATAGTTAT+AGG | - | chr4.4:28648062-28648081 | MS.gene56407:intron | 35.0% | |
| CGCTGTAACAGTTTAACATT+TGG | + | chr4.4:28646310-28646329 | None:intergenic | 35.0% | |
| CTATAACTATACGTGCACTA+TGG | + | chr4.4:28648064-28648083 | None:intergenic | 35.0% | |
| CTTGGTGAAGTTGGAATAAT+TGG | + | chr4.4:28645351-28645370 | None:intergenic | 35.0% | |
| GATGTCTATATCATCAATCC+AGG | + | chr4.4:28646663-28646682 | None:intergenic | 35.0% | |
| GGAGCTTAGCATCTTAATAA+TGG | - | chr4.4:28648536-28648555 | MS.gene56407:intron | 35.0% | |
| GTTGTAGTGAGATGCTTATT+TGG | - | chr4.4:28645512-28645531 | MS.gene56407:intron | 35.0% | |
| TATGTTTCACCGACATACAT+CGG | - | chr4.4:28647315-28647334 | MS.gene56407:intron | 35.0% | |
| TCAGTAAATTCTGACTTCCT+TGG | - | chr4.4:28647138-28647157 | MS.gene56407:intron | 35.0% | |
| TCATGCACTTCAACTTTACA+GGG | - | chr4.4:28649154-28649173 | MS.gene56407:CDS | 35.0% | |
| TCTAAAGGATGTTCTGATGA+TGG | + | chr4.4:28647260-28647279 | None:intergenic | 35.0% | |
| TCTTTCTCAATAGCTGTTTG+TGG | - | chr4.4:28648592-28648611 | MS.gene56407:intron | 35.0% | |
| TGTCTATATCATCAATCCAG+GGG | + | chr4.4:28646661-28646680 | None:intergenic | 35.0% | |
| TTGCTTAACATGTGCCTTAA+GGG | - | chr4.4:28648460-28648479 | MS.gene56407:intron | 35.0% | |
| TTTGGAAACTTCATCAATCC+TGG | - | chr4.4:28646469-28646488 | MS.gene56407:intron | 35.0% | |
| ! | AAGGTTATTTCATGTGTGCT+TGG | - | chr4.4:28645579-28645598 | MS.gene56407:intron | 35.0% |
| ! | ACTCCAGCTTATGGAAATTT+TGG | - | chr4.4:28645813-28645832 | MS.gene56407:intron | 35.0% |
| ! | ATGATGGAAGGAACTCTTAA+TGG | + | chr4.4:28647244-28647263 | None:intergenic | 35.0% |
| ! | CAAAATGATGGAGAGATAGA+TGG | + | chr4.4:28647730-28647749 | None:intergenic | 35.0% |
| ! | CATCTATCTCTCCATCATTT+TGG | - | chr4.4:28647728-28647747 | MS.gene56407:intron | 35.0% |
| ! | CTAACTTCTAAGAAAAGCAG+TGG | + | chr4.4:28647035-28647054 | None:intergenic | 35.0% |
| ! | CTCCAGCTTATGGAAATTTT+GGG | - | chr4.4:28645814-28645833 | MS.gene56407:intron | 35.0% |
| ! | GAAAGATTTGGGATGTTTCA+AGG | + | chr4.4:28648256-28648275 | None:intergenic | 35.0% |
| ! | GATGTTTGTTAGCTAGCATA+TGG | - | chr4.4:28645534-28645553 | MS.gene56407:intron | 35.0% |
| ! | GTAGTTTTTCCCTTCAGAAA+AGG | + | chr4.4:28646927-28646946 | None:intergenic | 35.0% |
| ! | TTTTACTATTCAACAGGTGC+TGG | - | chr4.4:28649074-28649093 | MS.gene56407:CDS | 35.0% |
| !! | TTTTAGCTGGAGGTGTATTT+GGG | - | chr4.4:28649105-28649124 | MS.gene56407:CDS | 35.0% |
| !!! | CTAGCAGTTTTAAGCTGAAA+TGG | + | chr4.4:28648765-28648784 | None:intergenic | 35.0% |
| !!! | TTTTTAGCTGGAGGTGTATT+TGG | - | chr4.4:28649104-28649123 | MS.gene56407:CDS | 35.0% |
| ACAGCATCCAAATATCTCCA+AGG | + | chr4.4:28647158-28647177 | None:intergenic | 40.0% | |
| ACTTTACAGGGTAGACACAT+TGG | - | chr4.4:28649166-28649185 | MS.gene56407:CDS | 40.0% | |
| AGAGTTAGACCATGAAGTGA+GGG | + | chr4.4:28645384-28645403 | None:intergenic | 40.0% | |
| ATGCTTAGACAGGTCTTTGA+CGG | - | chr4.4:28646832-28646851 | MS.gene56407:intron | 40.0% | |
| ATGGTCTAACTCTGATGTTG+AGG | - | chr4.4:28645391-28645410 | MS.gene56407:CDS | 40.0% | |
| ATGGTGCATGTCTCTTAAGT+TGG | - | chr4.4:28646749-28646768 | MS.gene56407:intron | 40.0% | |
| CAGCTATTGAGAAAGAAAGG+AGG | + | chr4.4:28648588-28648607 | None:intergenic | 40.0% | |
| CTGACTTCCTTGGAGATATT+TGG | - | chr4.4:28647148-28647167 | MS.gene56407:intron | 40.0% | |
| CTTTGCGGAGTTAAATGTAG+AGG | - | chr4.4:28645845-28645864 | MS.gene56407:intron | 40.0% | |
| GTTGCTTAACATGTGCCTTA+AGG | - | chr4.4:28648459-28648478 | MS.gene56407:intron | 40.0% | |
| TAACTCGCAATAGATGCAAG+TGG | - | chr4.4:28646869-28646888 | MS.gene56407:intron | 40.0% | |
| TCATGCTTCTGTTCCTTCAT+TGG | + | chr4.4:28646412-28646431 | None:intergenic | 40.0% | |
| TCGGTGAAACATACGAATGA+AGG | + | chr4.4:28647308-28647327 | None:intergenic | 40.0% | |
| TTGTTTCATCTGCGATGCAT+AGG | + | chr4.4:28647659-28647678 | None:intergenic | 40.0% | |
| ! | ATTCGTCTTCCCAGTCATTT+TGG | - | chr4.4:28645282-28645301 | MS.gene56407:CDS | 40.0% |
| ! | CTCTCCATCATTTTGGATGA+TGG | - | chr4.4:28647735-28647754 | MS.gene56407:intron | 40.0% |
| ! | GAAGGCTACAAAGAGTTTTG+GGG | - | chr4.4:28645305-28645324 | MS.gene56407:CDS | 40.0% |
| ! | GGAAGGCTACAAAGAGTTTT+GGG | - | chr4.4:28645304-28645323 | MS.gene56407:CDS | 40.0% |
| ! | TATTCACCGCAAGTTTTGCA+TGG | - | chr4.4:28648829-28648848 | MS.gene56407:intron | 40.0% |
| ! | TTTGGTTGCCCTTTTCTGAA+GGG | - | chr4.4:28646915-28646934 | MS.gene56407:intron | 40.0% |
| !! | AAGGATGTTCTGATGATGGA+AGG | + | chr4.4:28647256-28647275 | None:intergenic | 40.0% |
| !! | GTGAAAGAATGGTGTTACCA+CGG | + | chr4.4:28645447-28645466 | None:intergenic | 40.0% |
| !! | TGAAAGAATGGTGTTACCAC+GGG | + | chr4.4:28645446-28645465 | None:intergenic | 40.0% |
| !! | TGTTATCTGAAGTGCTGCTT+GGG | - | chr4.4:28648726-28648745 | MS.gene56407:intron | 40.0% |
| !! | TTCGTCTTCCCAGTCATTTT+GGG | - | chr4.4:28645283-28645302 | MS.gene56407:CDS | 40.0% |
| AACAACATGGCGAATGAACC+AGG | + | chr4.4:28646490-28646509 | None:intergenic | 45.0% | |
| AATGCTAACTTGAGCCCTCA+AGG | - | chr4.4:28648329-28648348 | MS.gene56407:intron | 45.0% | |
| ATCGCTTCTGATCCTGTTCA+TGG | - | chr4.4:28645419-28645438 | MS.gene56407:intron | 45.0% | |
| ATCTCGGTTAGGAACTTTGC+TGG | - | chr4.4:28645623-28645642 | MS.gene56407:intron | 45.0% | |
| ATGCTAACTTGAGCCCTCAA+GGG | - | chr4.4:28648330-28648349 | MS.gene56407:intron | 45.0% | |
| ATTTGATCAACCCTCCACAC+TGG | - | chr4.4:28647531-28647550 | MS.gene56407:intron | 45.0% | |
| CAGAGTTAGACCATGAAGTG+AGG | + | chr4.4:28645385-28645404 | None:intergenic | 45.0% | |
| CCTTCATCAACTCCAGCTTA+TGG | - | chr4.4:28645804-28645823 | MS.gene56407:intron | 45.0% | |
| CTGACTCTGCATTCGTATAG+TGG | + | chr4.4:28647122-28647141 | None:intergenic | 45.0% | |
| GAAAAGGGCAACCAAACAAG+TGG | + | chr4.4:28646911-28646930 | None:intergenic | 45.0% | |
| GACTGTGTTATCACTCCTCA+CGG | - | chr4.4:28648101-28648120 | MS.gene56407:intron | 45.0% | |
| GAGTTAGACCATGAAGTGAG+GGG | + | chr4.4:28645383-28645402 | None:intergenic | 45.0% | |
| GCTAGAGAAGCAGTGCAATA+TGG | - | chr4.4:28648780-28648799 | MS.gene56407:intron | 45.0% | |
| GGTGTATTTGGGTGGACATA+TGG | - | chr4.4:28649116-28649135 | MS.gene56407:CDS | 45.0% | |
| GTAGCCTTCCCAAAATGACT+GGG | + | chr4.4:28645294-28645313 | None:intergenic | 45.0% | |
| GTCACAGTCAATGCTTAGAC+AGG | - | chr4.4:28646822-28646841 | MS.gene56407:intron | 45.0% | |
| TACGTGCACTATGGGTAACT+TGG | + | chr4.4:28648055-28648074 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | + | chr4.4:28648346-28648365 | None:intergenic | 45.0% | |
| TGTAGCCTTCCCAAAATGAC+TGG | + | chr4.4:28645295-28645314 | None:intergenic | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | + | chr4.4:28648347-28648366 | None:intergenic | 45.0% | |
| ! | ATTTTGCGGCTTTCCTACAG+TGG | - | chr4.4:28647599-28647618 | MS.gene56407:intron | 45.0% |
| ! | CATGCTAACTTGTGCCCTTA+AGG | + | chr4.4:28648477-28648496 | None:intergenic | 45.0% |
| ! | CTTATCACGCTTGGTGAAGT+TGG | + | chr4.4:28645360-28645379 | None:intergenic | 45.0% |
| ! | GGACATGTTTTCGGTACCAA+CGG | - | chr4.4:28648217-28648236 | MS.gene56407:intron | 45.0% |
| ! | GGGAAGGCTACAAAGAGTTT+TGG | - | chr4.4:28645303-28645322 | MS.gene56407:CDS | 45.0% |
| ! | GTTTGGTTGCCCTTTTCTGA+AGG | - | chr4.4:28646914-28646933 | MS.gene56407:intron | 45.0% |
| ! | TTTTCGGTACCAACGGTGAT+TGG | - | chr4.4:28648224-28648243 | MS.gene56407:intron | 45.0% |
| !! | AGTTTCTGGAGTGGTGGAAA+AGG | - | chr4.4:28649201-28649220 | MS.gene56407:CDS | 45.0% |
| !! | CCATAAGCTGGAGTTGATGA+AGG | + | chr4.4:28645807-28645826 | None:intergenic | 45.0% |
| !! | CTGTTATCTGAAGTGCTGCT+TGG | - | chr4.4:28648725-28648744 | MS.gene56407:intron | 45.0% |
| !! | GGTGTGCCACTTCTTTATGT+TGG | - | chr4.4:28646037-28646056 | MS.gene56407:intron | 45.0% |
| !! | GTCTTTGACGGCTTGTTATG+TGG | - | chr4.4:28646844-28646863 | MS.gene56407:intron | 45.0% |
| !! | TCTTCCCAGTCATTTTGGGA+AGG | - | chr4.4:28645287-28645306 | MS.gene56407:CDS | 45.0% |
| !! | AAATTAAACAAAAATTATAA+TGG | - | chr4.4:28648286-28648305 | MS.gene56407:intron | 5.0% |
| AGGCAAATGCCAATCACCGT+TGG | + | chr4.4:28648236-28648255 | None:intergenic | 50.0% | |
| CAAATACTACTATCCCGGCC+CGG | + | chr4.4:28645677-28645696 | None:intergenic | 50.0% | |
| GCAGTGGAACAGTTCTTTCG+TGG | + | chr4.4:28647019-28647038 | None:intergenic | 50.0% | |
| GGAAAAGGAAGACCGAAGGA+GGG | - | chr4.4:28649216-28649235 | MS.gene56407:CDS | 50.0% | |
| GGAAGACACTCAAGTGTGCT+TGG | - | chr4.4:28645986-28646005 | MS.gene56407:intron | 50.0% | |
| GTGATAAGCCCCTCACTTCA+TGG | - | chr4.4:28645372-28645391 | MS.gene56407:CDS | 50.0% | |
| TGCGTTTGATGTCTTGCTGC+CGG | - | chr4.4:28645655-28645674 | MS.gene56407:CDS | 50.0% | |
| TGGAAAAGGAAGACCGAAGG+AGG | - | chr4.4:28649215-28649234 | MS.gene56407:CDS | 50.0% | |
| TGGTGGAAAAGGAAGACCGA+AGG | - | chr4.4:28649212-28649231 | MS.gene56407:CDS | 50.0% | |
| ! | CTGAGGCTAAGTTTCTGGAG+TGG | - | chr4.4:28649192-28649211 | MS.gene56407:CDS | 50.0% |
| ! | GCAGTGCAATATGGTCTTGC+AGG | - | chr4.4:28648789-28648808 | MS.gene56407:intron | 50.0% |
| ! | TAGCTGGAGGTGTATTTGGG+TGG | - | chr4.4:28649108-28649127 | MS.gene56407:CDS | 50.0% |
| !! | AGGCTAAGTTTCTGGAGTGG+TGG | - | chr4.4:28649195-28649214 | MS.gene56407:CDS | 50.0% |
| !! | CGAAAGGAGTGCTGTATCAC+TGG | + | chr4.4:28645906-28645925 | None:intergenic | 50.0% |
| !! | GCTGGTCTGTCCTTTTTAGC+TGG | - | chr4.4:28649092-28649111 | MS.gene56407:CDS | 50.0% |
| !! | GGCTTCTGAGGCTAAGTTTC+TGG | - | chr4.4:28649187-28649206 | MS.gene56407:CDS | 50.0% |
| !! | GGTAGACACATTGGCTTCTG+AGG | - | chr4.4:28649175-28649194 | MS.gene56407:CDS | 50.0% |
| !! | GGTCTTGCAGGAAGTGCTTT+GGG | - | chr4.4:28648801-28648820 | MS.gene56407:intron | 50.0% |
| !! | TGGTCTTGCAGGAAGTGCTT+TGG | - | chr4.4:28648800-28648819 | MS.gene56407:intron | 50.0% |
| !!! | GGTCTGTCCTTTTTAGCTGG+AGG | - | chr4.4:28649095-28649114 | MS.gene56407:CDS | 50.0% |
| AGTGAGGGGCTTATCACGCT+TGG | + | chr4.4:28645369-28645388 | None:intergenic | 55.0% | |
| ATAGAGCCACAACTGCCGTG+AGG | + | chr4.4:28648119-28648138 | None:intergenic | 55.0% | |
| ATCACTCCTCACGGCAGTTG+TGG | - | chr4.4:28648110-28648129 | MS.gene56407:intron | 55.0% | |
| CGGCTTTCCTACAGTGGTAG+CGG | - | chr4.4:28647605-28647624 | MS.gene56407:intron | 55.0% | |
| GCGTTTGATGTCTTGCTGCC+GGG | - | chr4.4:28645656-28645675 | MS.gene56407:CDS | 55.0% | |
| GTTACCACGGGTCCATGAAC+AGG | + | chr4.4:28645434-28645453 | None:intergenic | 55.0% | |
| TGATCCTGTTCATGGACCCG+TGG | - | chr4.4:28645427-28645446 | MS.gene56407:intron | 55.0% | |
| TGGAAGCTATTCTGCTCCCC+TGG | - | chr4.4:28646642-28646661 | MS.gene56407:intron | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | - | chr4.4:28648342-28648361 | MS.gene56407:intron | 55.0% |
| ACTGGGACCGCTACCACTGT+AGG | + | chr4.4:28647615-28647634 | None:intergenic | 60.0% | |
| AGCGCAAGCACCAGTGTGGA+GGG | + | chr4.4:28647544-28647563 | None:intergenic | 60.0% | |
| GTCACCACGAGTGTGCATCG+CGG | - | chr4.4:28647970-28647989 | MS.gene56407:intron | 60.0% | |
| TTGATGTCTTGCTGCCGGGC+CGG | - | chr4.4:28645660-28645679 | MS.gene56407:CDS | 60.0% | |
| ACCACCGCGATGCACACTCG+TGG | + | chr4.4:28647977-28647996 | None:intergenic | 65.0% | |
| ACCACGAGTGTGCATCGCGG+TGG | - | chr4.4:28647973-28647992 | MS.gene56407:intron | 65.0% | |
| CAGCGCAAGCACCAGTGTGG+AGG | + | chr4.4:28647545-28647564 | None:intergenic | 65.0% | |
| CTCCACACTGGTGCTTGCGC+TGG | - | chr4.4:28647543-28647562 | MS.gene56407:intron | 65.0% | |
| GACCAGCGCAAGCACCAGTG+TGG | + | chr4.4:28647548-28647567 | None:intergenic | 65.0% | |
| TGATGTCTTGCTGCCGGGCC+GGG | - | chr4.4:28645661-28645680 | MS.gene56407:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28645263 | 28649244 | 28645263 | ID=MS.gene56407 |
| chr4.4 | mRNA | 28645263 | 28649244 | 28645263 | ID=MS.gene56407.t1;Parent=MS.gene56407 |
| chr4.4 | exon | 28649059 | 28649244 | 28649059 | ID=MS.gene56407.t1.exon1;Parent=MS.gene56407.t1 |
| chr4.4 | CDS | 28649059 | 28649244 | 28649059 | ID=cds.MS.gene56407.t1;Parent=MS.gene56407.t1 |
| chr4.4 | exon | 28645634 | 28645736 | 28645634 | ID=MS.gene56407.t1.exon2;Parent=MS.gene56407.t1 |
| chr4.4 | CDS | 28645634 | 28645736 | 28645634 | ID=cds.MS.gene56407.t1;Parent=MS.gene56407.t1 |
| chr4.4 | exon | 28645263 | 28645417 | 28645263 | ID=MS.gene56407.t1.exon3;Parent=MS.gene56407.t1 |
| chr4.4 | CDS | 28645263 | 28645417 | 28645263 | ID=cds.MS.gene56407.t1;Parent=MS.gene56407.t1 |
| Gene Sequence |
| Protein sequence |
