Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059509.t1 | XP_024636564.1 | 98 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 9.90E-78 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059509.t1 | Q941A6 | 67.6 | 139 | 41 | 1 | 10 | 144 | 4 | 142 | 5.5e-53 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059509.t1 | I3SYS2 | 98.0 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 7.1e-78 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059509 | MS.gene56407 | 0.928071 | 4.84E-92 | -1.69E-46 |
| MS.gene059509 | MS.gene86351 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene059509 | MS.gene89062 | 0.828691 | 7.81E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059509.t1 | MTR_4g084320 | 97.959 | 147 | 3 | 0 | 1 | 147 | 55 | 201 | 2.30e-105 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059509.t1 | AT1G08480 | 69.466 | 131 | 40 | 0 | 14 | 144 | 12 | 142 | 4.91e-69 | 205 |
Find 39 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTGAGGCTAAGTTTC+TGG | 0.132479 | 4.4:+27492133 | MS.gene059509:CDS |
| ATTCGTCTTCCCAGTCATTC+TGG | 0.231471 | 4.4:+27488434 | MS.gene059509:CDS |
| ATCATGCACTTCAACTTTAC+AGG | 0.238941 | 4.4:+27492099 | MS.gene059509:CDS |
| ATCGCTTCTGATCCTGTTCA+TGG | 0.253430 | 4.4:+27488571 | MS.gene059509:CDS |
| CTTGGTGAAGTTGGAATAAT+TGG | 0.263649 | 4.4:-27488500 | None:intergenic |
| GGGAAGGCTACAAAGAGTTT+TGG | 0.275599 | 4.4:+27488455 | MS.gene059509:CDS |
| AAATACACCTCCAGCTAAAA+AGG | 0.286066 | 4.4:-27492048 | None:intergenic |
| GTGATAAGCCCCTCACTTCA+TGG | 0.377665 | 4.4:+27488524 | MS.gene059509:CDS |
| GCAGTGCAATATGGTCTTGC+AGG | 0.377833 | 4.4:+27491735 | MS.gene059509:CDS |
| GGTCTTGCAGGAAGTGCTTT+GGG | 0.386470 | 4.4:+27491747 | MS.gene059509:CDS |
| GTTGGAATAATTGGTCATAA+AGG | 0.404341 | 4.4:-27488491 | None:intergenic |
| CTTATCACGCTTGGTGAAGT+TGG | 0.419972 | 4.4:-27488509 | None:intergenic |
| TTCGTCTTCCCAGTCATTCT+GGG | 0.426208 | 4.4:+27488435 | MS.gene059509:CDS |
| TGGTCTTGCAGGAAGTGCTT+TGG | 0.428188 | 4.4:+27491746 | MS.gene059509:CDS |
| ACAGCTTCAATTCCCTCCTT+CGG | 0.445398 | 4.4:-27492174 | None:intergenic |
| GGTGTATTTGGGTGGACATA+TGG | 0.445640 | 4.4:+27492062 | MS.gene059509:CDS |
| GTTACCACGGGTCCATGAAC+AGG | 0.451033 | 4.4:-27488583 | None:intergenic |
| GCTAGAGAAGCAGTGCAATA+TGG | 0.455581 | 4.4:+27491726 | MS.gene059509:CDS |
| TGTAGCCTTCCCAGAATGAC+TGG | 0.458362 | 4.4:-27488444 | None:intergenic |
| AGTTTCTGGAGTGGTGGAAA+AGG | 0.517098 | 4.4:+27492147 | MS.gene059509:CDS |
| TAGCTGGAGGTGTATTTGGG+TGG | 0.524323 | 4.4:+27492054 | MS.gene059509:CDS |
| AAATATTCAAGGAGTTTACA+TGG | 0.544388 | 4.4:+27491798 | MS.gene059509:CDS |
| ACTTTACAGGGTAGACACAT+TGG | 0.564264 | 4.4:+27492112 | MS.gene059509:CDS |
| AGTGAGGGGCTTATCACGCT+TGG | 0.564366 | 4.4:-27488518 | None:intergenic |
| TCTTCCCAGTCATTCTGGGA+AGG | 0.573126 | 4.4:+27488439 | MS.gene059509:CDS |
| GTAGCCTTCCCAGAATGACT+GGG | 0.575729 | 4.4:-27488443 | None:intergenic |
| GGTAGACACATTGGCTTCTG+AGG | 0.581406 | 4.4:+27492121 | MS.gene059509:CDS |
| AGGCTAAGTTTCTGGAGTGG+TGG | 0.583207 | 4.4:+27492141 | MS.gene059509:CDS |
| AGAGTTAGACCATGAAGTGA+GGG | 0.583758 | 4.4:-27488533 | None:intergenic |
| CTGAGGCTAAGTTTCTGGAG+TGG | 0.585312 | 4.4:+27492138 | MS.gene059509:CDS |
| TCATGCACTTCAACTTTACA+GGG | 0.597628 | 4.4:+27492100 | MS.gene059509:CDS |
| ATATTTCCATGCAAAACTTG+CGG | 0.611503 | 4.4:-27491781 | None:intergenic |
| TGGAAAAGGAAGACCGAAGG+AGG | 0.614633 | 4.4:+27492161 | MS.gene059509:CDS |
| ATGGTCTAACTCTGATGTTG+AGG | 0.618270 | 4.4:+27488543 | MS.gene059509:CDS |
| CAGAGTTAGACCATGAAGTG+AGG | 0.623061 | 4.4:-27488534 | None:intergenic |
| TGATCCTGTTCATGGACCCG+TGG | 0.624228 | 4.4:+27488579 | MS.gene059509:CDS |
| GGAAAAGGAAGACCGAAGGA+GGG | 0.642478 | 4.4:+27492162 | MS.gene059509:CDS |
| TGGTGGAAAAGGAAGACCGA+AGG | 0.651293 | 4.4:+27492158 | MS.gene059509:CDS |
| GAGTTAGACCATGAAGTGAG+GGG | 0.691408 | 4.4:-27488532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAGAAAAATAAATAAA+TGG | - | chr4.4:27490875-27490894 | None:intergenic | 10.0% |
| !!! | TTTTATTAGAAAAAATAGAA+CGG | + | chr4.4:27489482-27489501 | MS.gene059509:intron | 10.0% |
| !! | ACAATTATTAAAGAAAATAC+TGG | - | chr4.4:27490579-27490598 | None:intergenic | 15.0% |
| !! | ACATATGAAACAAAAAAAAT+AGG | - | chr4.4:27491447-27491466 | None:intergenic | 15.0% |
| !! | CAATTATTAAAGAAAATACT+GGG | - | chr4.4:27490578-27490597 | None:intergenic | 15.0% |
| !! | CATATGAAACAAAAAAAATA+GGG | - | chr4.4:27491446-27491465 | None:intergenic | 15.0% |
| !! | TAATATTTCATTTGGAAAAA+TGG | + | chr4.4:27489226-27489245 | MS.gene059509:intron | 15.0% |
| !!! | AAATTGTTTTAGATTATATG+AGG | + | chr4.4:27488898-27488917 | MS.gene059509:intron | 15.0% |
| !!! | TAAAACAATTTTAATCAAGA+AGG | - | chr4.4:27488889-27488908 | None:intergenic | 15.0% |
| !!! | TATCTATTTTGTTGTTAAAT+TGG | + | chr4.4:27489115-27489134 | MS.gene059509:intron | 15.0% |
| !!! | TTTGTTTAATTTTTCTCATT+TGG | - | chr4.4:27491223-27491242 | None:intergenic | 15.0% |
| !! | CACATTTCAAATAAAAGTAA+AGG | - | chr4.4:27489394-27489413 | None:intergenic | 20.0% |
| !! | CATATGTGATTATTCATATT+TGG | + | chr4.4:27491460-27491479 | MS.gene059509:intron | 20.0% |
| !! | CTTTCCTAAACTTAAATAAA+TGG | + | chr4.4:27490043-27490062 | MS.gene059509:intron | 20.0% |
| !! | TAAATGGAAAGTTAGAAATA+TGG | - | chr4.4:27490859-27490878 | None:intergenic | 20.0% |
| !! | TACTTAAAACATATGACTTA+TGG | + | chr4.4:27490712-27490731 | MS.gene059509:intron | 20.0% |
| !! | TAGTAAATTATTGTCTTAGA+TGG | - | chr4.4:27490526-27490545 | None:intergenic | 20.0% |
| !! | TATACTTTGCTTGAATATAA+TGG | + | chr4.4:27490637-27490656 | MS.gene059509:intron | 20.0% |
| !!! | GACAAAATATATTTTGATAG+AGG | - | chr4.4:27489278-27489297 | None:intergenic | 20.0% |
| !!! | GACAATAATTTACTATTTTG+CGG | + | chr4.4:27490531-27490550 | MS.gene059509:intron | 20.0% |
| !!! | TAATTACTCAATTTTGAGTT+GGG | + | chr4.4:27490131-27490150 | MS.gene059509:intron | 20.0% |
| !!! | TTATTGTTTTACTATTCAAC+AGG | + | chr4.4:27492014-27492033 | MS.gene059509:intron | 20.0% |
| !!! | TTGCTTTTCATTTATTTTTC+AGG | + | chr4.4:27489658-27489677 | MS.gene059509:intron | 20.0% |
| ! | AAAATTAGTTAGACCAATGA+AGG | + | chr4.4:27489542-27489561 | MS.gene059509:intron | 25.0% |
| ! | AAATATTCAAGGAGTTTACA+TGG | + | chr4.4:27491798-27491817 | MS.gene059509:CDS | 25.0% |
| ! | AATTCATTATCATGTAAAGC+TGG | + | chr4.4:27490370-27490389 | MS.gene059509:intron | 25.0% |
| ! | AGATAAATCTTAGACATAGA+TGG | - | chr4.4:27490836-27490855 | None:intergenic | 25.0% |
| ! | ATAGTGCACATATAGTTATA+GGG | + | chr4.4:27491009-27491028 | MS.gene059509:intron | 25.0% |
| ! | ATTCAAGCAAAGTATATGAA+AGG | - | chr4.4:27490633-27490652 | None:intergenic | 25.0% |
| ! | GAAAAATGGTGTGATTAAAA+TGG | + | chr4.4:27489240-27489259 | MS.gene059509:intron | 25.0% |
| ! | TAAAAAGAGCAACTTTACAT+TGG | - | chr4.4:27491383-27491402 | None:intergenic | 25.0% |
| ! | TACACATGATAAACAATTTG+TGG | - | chr4.4:27490332-27490351 | None:intergenic | 25.0% |
| ! | TAGCATTTGCCAAAAAAATA+TGG | - | chr4.4:27491261-27491280 | None:intergenic | 25.0% |
| ! | TATAACTATATGTGCACTAT+GGG | - | chr4.4:27491009-27491028 | None:intergenic | 25.0% |
| ! | TATGTTGGATTTCTTAATGT+CGG | + | chr4.4:27489202-27489221 | MS.gene059509:intron | 25.0% |
| ! | TTAAAAGAGGAAAAGAGAAA+AGG | - | chr4.4:27491594-27491613 | None:intergenic | 25.0% |
| ! | TTGCAAAATGATCAATAAAC+TGG | + | chr4.4:27491141-27491160 | MS.gene059509:intron | 25.0% |
| ! | TTGTAAAATAACAGTCTTCA+TGG | - | chr4.4:27489300-27489319 | None:intergenic | 25.0% |
| ! | TTTCTCATTTGGAAAGATTT+GGG | - | chr4.4:27491212-27491231 | None:intergenic | 25.0% |
| !! | AATAATCAAGAGAGATTTTG+CGG | - | chr4.4:27490404-27490423 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTGCTCTTTTT+AGG | + | chr4.4:27491382-27491401 | MS.gene059509:intron | 25.0% |
| !! | ATACTTTAGTTTCTCTTACT+TGG | + | chr4.4:27490803-27490822 | MS.gene059509:intron | 25.0% |
| !! | ATGTCGGTTAATATTTCATT+TGG | + | chr4.4:27489218-27489237 | MS.gene059509:intron | 25.0% |
| !! | CTATGATTTAGAGTATATCT+CGG | + | chr4.4:27488759-27488778 | MS.gene059509:intron | 25.0% |
| !! | GATCATTTTGCAATAGAATT+AGG | - | chr4.4:27491134-27491153 | None:intergenic | 25.0% |
| !! | TACTTTAGTTTCTCTTACTT+GGG | + | chr4.4:27490804-27490823 | MS.gene059509:intron | 25.0% |
| !! | TAGTTTGAAATTTGTACACT+TGG | + | chr4.4:27489166-27489185 | MS.gene059509:intron | 25.0% |
| !! | TGGTCCATTTATTTAAGTTT+AGG | - | chr4.4:27490050-27490069 | None:intergenic | 25.0% |
| !! | TTTTCTCATTTGGAAAGATT+TGG | - | chr4.4:27491213-27491232 | None:intergenic | 25.0% |
| !!! | AATGGACAACCATATTTTTT+TGG | + | chr4.4:27491249-27491268 | MS.gene059509:intron | 25.0% |
| !!! | CTCCATCTATTTTTAACTAA+CGG | + | chr4.4:27490446-27490465 | MS.gene059509:intron | 25.0% |
| !!! | GACATAGTTTTAATAAGAGA+AGG | - | chr4.4:27490899-27490918 | None:intergenic | 25.0% |
| !!! | GTAATTACTCAATTTTGAGT+TGG | + | chr4.4:27490130-27490149 | MS.gene059509:intron | 25.0% |
| !!! | TAATTTTTCGACAAAGTTCA+AGG | - | chr4.4:27489529-27489548 | None:intergenic | 25.0% |
| !!! | TGTTTTAGATTATATGAGGA+TGG | + | chr4.4:27488902-27488921 | MS.gene059509:intron | 25.0% |
| !!! | TTTATTTTTCAGGTCAACTA+TGG | + | chr4.4:27489668-27489687 | MS.gene059509:intron | 25.0% |
| !!! | TTTTGGGTTTTTTTTCTTTG+CGG | + | chr4.4:27488980-27488999 | MS.gene059509:intron | 25.0% |
| AAACAGCTATTGAGAAAGAA+AGG | - | chr4.4:27491536-27491555 | None:intergenic | 30.0% | |
| AAGCAAAGTATATGAAAGGA+AGG | - | chr4.4:27490629-27490648 | None:intergenic | 30.0% | |
| AATGCAGAAACGATATGAAA+AGG | - | chr4.4:27488621-27488640 | None:intergenic | 30.0% | |
| ACAACGATTATGTAAGTATG+TGG | + | chr4.4:27489916-27489935 | MS.gene059509:intron | 30.0% | |
| ACATCCATGATGATATCTAA+AGG | - | chr4.4:27490223-27490242 | None:intergenic | 30.0% | |
| ACATCCTTTAGATATCATCA+TGG | + | chr4.4:27490216-27490235 | MS.gene059509:intron | 30.0% | |
| ACATTAAAACCGATGTATGT+CGG | - | chr4.4:27490275-27490294 | None:intergenic | 30.0% | |
| AGAAATCCAACATAAAGAAG+TGG | - | chr4.4:27489196-27489215 | None:intergenic | 30.0% | |
| ATATTTCCATGCAAAACTTG+CGG | - | chr4.4:27491784-27491803 | None:intergenic | 30.0% | |
| ATGTATTGTGTAAACACGAA+AGG | - | chr4.4:27489072-27489091 | None:intergenic | 30.0% | |
| CAAAACTACAAGATCAACAA+TGG | - | chr4.4:27491634-27491653 | None:intergenic | 30.0% | |
| CAACGATTATGTAAGTATGT+GGG | + | chr4.4:27489917-27489936 | MS.gene059509:intron | 30.0% | |
| CATAGTGCACATATAGTTAT+AGG | + | chr4.4:27491008-27491027 | MS.gene059509:intron | 30.0% | |
| CTATAACTATATGTGCACTA+TGG | - | chr4.4:27491010-27491029 | None:intergenic | 30.0% | |
| GATAAACAATTTGTGGTTGT+TGG | - | chr4.4:27490325-27490344 | None:intergenic | 30.0% | |
| GATATGAAAAGGTGAAAGAA+TGG | - | chr4.4:27488610-27488629 | None:intergenic | 30.0% | |
| GATGTTTAGGCATAGTAAAA+GGG | - | chr4.4:27491855-27491874 | None:intergenic | 30.0% | |
| GGTGTGATTAAAATGGTATA+TGG | + | chr4.4:27489247-27489266 | MS.gene059509:intron | 30.0% | |
| GTACATGAAATACTTTCGTA+CGG | - | chr4.4:27491966-27491985 | None:intergenic | 30.0% | |
| GTCCGTTAGTTAAAAATAGA+TGG | - | chr4.4:27490451-27490470 | None:intergenic | 30.0% | |
| GTTGGAATAATTGGTCATAA+AGG | - | chr4.4:27488494-27488513 | None:intergenic | 30.0% | |
| TAAACATCATCATCGTATGA+AGG | + | chr4.4:27491867-27491886 | MS.gene059509:intron | 30.0% | |
| TAGCTAGCATATGGTTTATA+GGG | + | chr4.4:27488695-27488714 | MS.gene059509:intron | 30.0% | |
| TATGGTTTATAGGGTTTGAT+TGG | + | chr4.4:27488704-27488723 | MS.gene059509:intron | 30.0% | |
| TGATGTTTAGGCATAGTAAA+AGG | - | chr4.4:27491856-27491875 | None:intergenic | 30.0% | |
| TTAGATAGAATCCACTTGTT+TGG | + | chr4.4:27489835-27489854 | MS.gene059509:intron | 30.0% | |
| TTAGCTAGCATATGGTTTAT+AGG | + | chr4.4:27488694-27488713 | MS.gene059509:intron | 30.0% | |
| TTCTACCTGAAGTTTAATGT+AGG | + | chr4.4:27491926-27491945 | MS.gene059509:intron | 30.0% | |
| ! | ATTTAGAGTATATCTCGGTT+AGG | + | chr4.4:27488764-27488783 | MS.gene059509:intron | 30.0% |
| ! | CAATAAACTGGACATGTTTT+CGG | + | chr4.4:27491153-27491172 | MS.gene059509:intron | 30.0% |
| ! | GGCATGTTTTCATCAATAAA+AGG | - | chr4.4:27489435-27489454 | None:intergenic | 30.0% |
| ! | GTTTTGCATGGAAATATTCA+AGG | + | chr4.4:27491787-27491806 | MS.gene059509:CDS | 30.0% |
| ! | TAGTTTTTCCCTTCAGAAAA+GGG | - | chr4.4:27489864-27489883 | None:intergenic | 30.0% |
| ! | TTCATACGATGATGATGTTT+AGG | - | chr4.4:27491868-27491887 | None:intergenic | 30.0% |
| ! | TTTTAAGCTGAAATGGGAAA+AGG | - | chr4.4:27491704-27491723 | None:intergenic | 30.0% |
| !!! | TAGCAGTTTTAAGCTGAAAT+GGG | - | chr4.4:27491710-27491729 | None:intergenic | 30.0% |
| AAATACACCTCCAGCTAAAA+AGG | - | chr4.4:27492051-27492070 | None:intergenic | 35.0% | |
| AACCCAAAATTTCCATAAGC+TGG | - | chr4.4:27488969-27488988 | None:intergenic | 35.0% | |
| AAGAGAAAAGGATGGAGAAA+AGG | - | chr4.4:27491582-27491601 | None:intergenic | 35.0% | |
| AAGAGGAAAAGAGAAAAGGA+TGG | - | chr4.4:27491590-27491609 | None:intergenic | 35.0% | |
| ACTTGCAAATACTACTATCC+CGG | - | chr4.4:27488832-27488851 | None:intergenic | 35.0% | |
| ATAGGGTTTGATTGGTAGAA+AGG | + | chr4.4:27488712-27488731 | MS.gene059509:intron | 35.0% | |
| ATCATGCACTTCAACTTTAC+AGG | + | chr4.4:27492099-27492118 | MS.gene059509:CDS | 35.0% | |
| CAAAGCCTACATTAAACTTC+AGG | - | chr4.4:27491934-27491953 | None:intergenic | 35.0% | |
| CGCTGTAACAGTTTAACATT+TGG | - | chr4.4:27489456-27489475 | None:intergenic | 35.0% | |
| CTTGGTGAAGTTGGAATAAT+TGG | - | chr4.4:27488503-27488522 | None:intergenic | 35.0% | |
| GGAGCTTAGCATCTTAATAA+TGG | + | chr4.4:27491481-27491500 | MS.gene059509:intron | 35.0% | |
| GTTGTAGTGAGATGCTTATT+TGG | + | chr4.4:27488664-27488683 | MS.gene059509:intron | 35.0% | |
| TAGCACTTAGCACTATTACA+TGG | + | chr4.4:27489611-27489630 | MS.gene059509:intron | 35.0% | |
| TATGTTTCACCGACATACAT+CGG | + | chr4.4:27490263-27490282 | MS.gene059509:intron | 35.0% | |
| TCAGTAAATTCTGACTTCCT+TGG | + | chr4.4:27490086-27490105 | MS.gene059509:intron | 35.0% | |
| TCATGCACTTCAACTTTACA+GGG | + | chr4.4:27492100-27492119 | MS.gene059509:CDS | 35.0% | |
| TCTAAAGGATGTTCTGATGA+TGG | - | chr4.4:27490208-27490227 | None:intergenic | 35.0% | |
| TCTTTCTCAATAGCTGTTTG+TGG | + | chr4.4:27491537-27491556 | MS.gene059509:intron | 35.0% | |
| TTGCTTAACATGTGCCTTAA+GGG | + | chr4.4:27491405-27491424 | MS.gene059509:intron | 35.0% | |
| ! | AAGGTTATTTCATGTGTGCT+TGG | + | chr4.4:27488731-27488750 | MS.gene059509:intron | 35.0% |
| ! | ACTCCAGCTTATGGAAATTT+TGG | + | chr4.4:27488963-27488982 | MS.gene059509:intron | 35.0% |
| ! | ATGATGGAAGGAACTCTTAA+TGG | - | chr4.4:27490192-27490211 | None:intergenic | 35.0% |
| ! | CTAACTTCTAAGAAAAGCAG+TGG | - | chr4.4:27489973-27489992 | None:intergenic | 35.0% |
| ! | CTCCAGCTTATGGAAATTTT+GGG | + | chr4.4:27488964-27488983 | MS.gene059509:intron | 35.0% |
| ! | GAAAGATTTGGGATGTTTCA+AGG | - | chr4.4:27491201-27491220 | None:intergenic | 35.0% |
| ! | GATGTTTGTTAGCTAGCATA+TGG | + | chr4.4:27488686-27488705 | MS.gene059509:intron | 35.0% |
| ! | GTAGTTTTTCCCTTCAGAAA+AGG | - | chr4.4:27489865-27489884 | None:intergenic | 35.0% |
| ! | TTTAGTTTCTCTTACTTGGG+TGG | + | chr4.4:27490807-27490826 | MS.gene059509:intron | 35.0% |
| ! | TTTTACTATTCAACAGGTGC+TGG | + | chr4.4:27492020-27492039 | MS.gene059509:intron | 35.0% |
| !! | TGAAATGTGTTGATTGTCAC+TGG | + | chr4.4:27489405-27489424 | MS.gene059509:intron | 35.0% |
| !! | TTTTAGCTGGAGGTGTATTT+GGG | + | chr4.4:27492051-27492070 | MS.gene059509:CDS | 35.0% |
| !!! | CTAGCAGTTTTAAGCTGAAA+TGG | - | chr4.4:27491711-27491730 | None:intergenic | 35.0% |
| !!! | TTTTTAGCTGGAGGTGTATT+TGG | + | chr4.4:27492050-27492069 | MS.gene059509:CDS | 35.0% |
| AAGTCCATCATCCACAATGA+TGG | - | chr4.4:27490688-27490707 | None:intergenic | 40.0% | |
| ACAGCATCCAAATATCTCCA+AGG | - | chr4.4:27490106-27490125 | None:intergenic | 40.0% | |
| ACTTTACAGGGTAGACACAT+TGG | + | chr4.4:27492112-27492131 | MS.gene059509:CDS | 40.0% | |
| AGAGTTAGACCATGAAGTGA+GGG | - | chr4.4:27488536-27488555 | None:intergenic | 40.0% | |
| ATGCTTAGACAGGTCTTTGA+CGG | + | chr4.4:27489770-27489789 | MS.gene059509:intron | 40.0% | |
| ATGGTCTAACTCTGATGTTG+AGG | + | chr4.4:27488543-27488562 | MS.gene059509:CDS | 40.0% | |
| ATGGTGCATGTCTCTTAAGT+TGG | + | chr4.4:27489687-27489706 | MS.gene059509:intron | 40.0% | |
| CAGCTATTGAGAAAGAAAGG+AGG | - | chr4.4:27491533-27491552 | None:intergenic | 40.0% | |
| CATCTATCTCTCCATCATTG+TGG | + | chr4.4:27490674-27490693 | MS.gene059509:intron | 40.0% | |
| CTGACTTCCTTGGAGATATT+TGG | + | chr4.4:27490096-27490115 | MS.gene059509:intron | 40.0% | |
| CTTTGCGGAGTTAAATGTAG+AGG | + | chr4.4:27488995-27489014 | MS.gene059509:intron | 40.0% | |
| GTTGCTTAACATGTGCCTTA+AGG | + | chr4.4:27491404-27491423 | MS.gene059509:intron | 40.0% | |
| TAACTCGCAATAGATGCAAG+TGG | + | chr4.4:27489807-27489826 | MS.gene059509:intron | 40.0% | |
| TATGTGCACTATGGGTAACT+TGG | - | chr4.4:27491001-27491020 | None:intergenic | 40.0% | |
| TCATGCTTCTGTTCCTTCAT+TGG | - | chr4.4:27489558-27489577 | None:intergenic | 40.0% | |
| TCGGTGAAACATACGAATGA+AGG | - | chr4.4:27490256-27490275 | None:intergenic | 40.0% | |
| TTGTTTCATCTGCGATGCAT+AGG | - | chr4.4:27490605-27490624 | None:intergenic | 40.0% | |
| ! | CACAATGATGGAGAGATAGA+TGG | - | chr4.4:27490676-27490695 | None:intergenic | 40.0% |
| ! | GAAGGCTACAAAGAGTTTTG+GGG | + | chr4.4:27488457-27488476 | MS.gene059509:CDS | 40.0% |
| ! | GGAAGGCTACAAAGAGTTTT+GGG | + | chr4.4:27488456-27488475 | MS.gene059509:CDS | 40.0% |
| ! | TATTCACCGCAAGTTTTGCA+TGG | + | chr4.4:27491775-27491794 | MS.gene059509:CDS | 40.0% |
| ! | TTTGGTTGCCCTTTTCTGAA+GGG | + | chr4.4:27489853-27489872 | MS.gene059509:intron | 40.0% |
| !! | AAGGATGTTCTGATGATGGA+AGG | - | chr4.4:27490204-27490223 | None:intergenic | 40.0% |
| !! | GTGAAAGAATGGTGTTACCA+CGG | - | chr4.4:27488599-27488618 | None:intergenic | 40.0% |
| !! | TGAAAGAATGGTGTTACCAC+GGG | - | chr4.4:27488598-27488617 | None:intergenic | 40.0% |
| !! | TGTTATCTGAAGTGCTGCTT+GGG | + | chr4.4:27491672-27491691 | MS.gene059509:intron | 40.0% |
| AATGCTAACTTGAGCCCTCA+AGG | + | chr4.4:27491274-27491293 | MS.gene059509:intron | 45.0% | |
| ATCGCTTCTGATCCTGTTCA+TGG | + | chr4.4:27488571-27488590 | MS.gene059509:CDS | 45.0% | |
| ATCTCGGTTAGGAACTTTGC+TGG | + | chr4.4:27488775-27488794 | MS.gene059509:intron | 45.0% | |
| ATGCTAACTTGAGCCCTCAA+GGG | + | chr4.4:27491275-27491294 | MS.gene059509:intron | 45.0% | |
| ATTCGTCTTCCCAGTCATTC+TGG | + | chr4.4:27488434-27488453 | MS.gene059509:CDS | 45.0% | |
| ATTTGATCAACCCTCCACAC+TGG | + | chr4.4:27490477-27490496 | MS.gene059509:intron | 45.0% | |
| CAGAGTTAGACCATGAAGTG+AGG | - | chr4.4:27488537-27488556 | None:intergenic | 45.0% | |
| CCTTCATCAACTCCAGCTTA+TGG | + | chr4.4:27488954-27488973 | MS.gene059509:intron | 45.0% | |
| CTCTCCATCATTGTGGATGA+TGG | + | chr4.4:27490681-27490700 | MS.gene059509:intron | 45.0% | |
| CTGACTCTGCATTCGTATAG+TGG | - | chr4.4:27490070-27490089 | None:intergenic | 45.0% | |
| GAAAAGGGCAACCAAACAAG+TGG | - | chr4.4:27489849-27489868 | None:intergenic | 45.0% | |
| GAGTTAGACCATGAAGTGAG+GGG | - | chr4.4:27488535-27488554 | None:intergenic | 45.0% | |
| GCTAGAGAAGCAGTGCAATA+TGG | + | chr4.4:27491726-27491745 | MS.gene059509:CDS | 45.0% | |
| GGTGTATTTGGGTGGACATA+TGG | + | chr4.4:27492062-27492081 | MS.gene059509:CDS | 45.0% | |
| GTCACAGTCAATGCTTAGAC+AGG | + | chr4.4:27489760-27489779 | MS.gene059509:intron | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | - | chr4.4:27491291-27491310 | None:intergenic | 45.0% | |
| TGACTGTGTATCACTCCTCA+CGG | + | chr4.4:27491046-27491065 | MS.gene059509:intron | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | - | chr4.4:27491292-27491311 | None:intergenic | 45.0% | |
| TTCGTCTTCCCAGTCATTCT+GGG | + | chr4.4:27488435-27488454 | MS.gene059509:CDS | 45.0% | |
| ! | ATTTTGCGGCTTTCCTACAG+TGG | + | chr4.4:27490545-27490564 | MS.gene059509:intron | 45.0% |
| ! | CATGCTAACTTGTGCCCTTA+AGG | - | chr4.4:27491422-27491441 | None:intergenic | 45.0% |
| ! | CTTATCACGCTTGGTGAAGT+TGG | - | chr4.4:27488512-27488531 | None:intergenic | 45.0% |
| ! | GGACATGTTTTCGGTACCAA+CGG | + | chr4.4:27491162-27491181 | MS.gene059509:intron | 45.0% |
| ! | GGGAAGGCTACAAAGAGTTT+TGG | + | chr4.4:27488455-27488474 | MS.gene059509:CDS | 45.0% |
| ! | GTTTGGTTGCCCTTTTCTGA+AGG | + | chr4.4:27489852-27489871 | MS.gene059509:intron | 45.0% |
| ! | TTTTCGGTACCAACGGTGAT+TGG | + | chr4.4:27491169-27491188 | MS.gene059509:intron | 45.0% |
| !! | AGTTTCTGGAGTGGTGGAAA+AGG | + | chr4.4:27492147-27492166 | MS.gene059509:CDS | 45.0% |
| !! | CCATAAGCTGGAGTTGATGA+AGG | - | chr4.4:27488957-27488976 | None:intergenic | 45.0% |
| !! | CTGTTATCTGAAGTGCTGCT+TGG | + | chr4.4:27491671-27491690 | MS.gene059509:intron | 45.0% |
| !! | GGTGTGCCACTTCTTTATGT+TGG | + | chr4.4:27489187-27489206 | MS.gene059509:intron | 45.0% |
| !! | GTCTTTGACGGCTTGTTATG+TGG | + | chr4.4:27489782-27489801 | MS.gene059509:intron | 45.0% |
| !! | AAATTAAACAAAAATTATAA+TGG | + | chr4.4:27491231-27491250 | MS.gene059509:intron | 5.0% |
| !!! | TTTATTTATATTTTTAAAAG+AGG | - | chr4.4:27491607-27491626 | None:intergenic | 5.0% |
| AGGCAAATGCCAATCACCGT+TGG | - | chr4.4:27491181-27491200 | None:intergenic | 50.0% | |
| ATAGAGCCACAACTACCGTG+AGG | - | chr4.4:27491064-27491083 | None:intergenic | 50.0% | |
| ATCACTCCTCACGGTAGTTG+TGG | + | chr4.4:27491055-27491074 | MS.gene059509:intron | 50.0% | |
| CAAATACTACTATCCCGGCC+CGG | - | chr4.4:27488827-27488846 | None:intergenic | 50.0% | |
| GCAGTGGAACAGTTCTTTCG+TGG | - | chr4.4:27489957-27489976 | None:intergenic | 50.0% | |
| GGAAAAGGAAGACCGAAGGA+GGG | + | chr4.4:27492162-27492181 | MS.gene059509:CDS | 50.0% | |
| GGAAGACACTCAAGTGTGCT+TGG | + | chr4.4:27489136-27489155 | MS.gene059509:intron | 50.0% | |
| GTAGCCTTCCCAGAATGACT+GGG | - | chr4.4:27488446-27488465 | None:intergenic | 50.0% | |
| GTGATAAGCCCCTCACTTCA+TGG | + | chr4.4:27488524-27488543 | MS.gene059509:CDS | 50.0% | |
| TGCGTTTGATGTCTTGCTGC+CGG | + | chr4.4:27488805-27488824 | MS.gene059509:intron | 50.0% | |
| TGGAAAAGGAAGACCGAAGG+AGG | + | chr4.4:27492161-27492180 | MS.gene059509:CDS | 50.0% | |
| TGGTGGAAAAGGAAGACCGA+AGG | + | chr4.4:27492158-27492177 | MS.gene059509:CDS | 50.0% | |
| TGTAGCCTTCCCAGAATGAC+TGG | - | chr4.4:27488447-27488466 | None:intergenic | 50.0% | |
| ! | CTGAGGCTAAGTTTCTGGAG+TGG | + | chr4.4:27492138-27492157 | MS.gene059509:CDS | 50.0% |
| ! | GCAGTGCAATATGGTCTTGC+AGG | + | chr4.4:27491735-27491754 | MS.gene059509:CDS | 50.0% |
| ! | TAGCTGGAGGTGTATTTGGG+TGG | + | chr4.4:27492054-27492073 | MS.gene059509:CDS | 50.0% |
| ! | TCTTCCCAGTCATTCTGGGA+AGG | + | chr4.4:27488439-27488458 | MS.gene059509:CDS | 50.0% |
| !! | AGGCTAAGTTTCTGGAGTGG+TGG | + | chr4.4:27492141-27492160 | MS.gene059509:CDS | 50.0% |
| !! | CGAAAGGAGTGCTGTATCAC+TGG | - | chr4.4:27489056-27489075 | None:intergenic | 50.0% |
| !! | GCTGGTCTGTCCTTTTTAGC+TGG | + | chr4.4:27492038-27492057 | MS.gene059509:CDS | 50.0% |
| !! | GGCTTCTGAGGCTAAGTTTC+TGG | + | chr4.4:27492133-27492152 | MS.gene059509:CDS | 50.0% |
| !! | GGTAGACACATTGGCTTCTG+AGG | + | chr4.4:27492121-27492140 | MS.gene059509:CDS | 50.0% |
| !! | GGTCTTGCAGGAAGTGCTTT+GGG | + | chr4.4:27491747-27491766 | MS.gene059509:CDS | 50.0% |
| !! | TGGTCTTGCAGGAAGTGCTT+TGG | + | chr4.4:27491746-27491765 | MS.gene059509:CDS | 50.0% |
| !!! | GGTCTGTCCTTTTTAGCTGG+AGG | + | chr4.4:27492041-27492060 | MS.gene059509:CDS | 50.0% |
| AGTGAGGGGCTTATCACGCT+TGG | - | chr4.4:27488521-27488540 | None:intergenic | 55.0% | |
| CGGCTTTCCTACAGTGGTAG+CGG | + | chr4.4:27490551-27490570 | MS.gene059509:intron | 55.0% | |
| GCGTTTGATGTCTTGCTGCC+GGG | + | chr4.4:27488806-27488825 | MS.gene059509:intron | 55.0% | |
| GTTACCACGGGTCCATGAAC+AGG | - | chr4.4:27488586-27488605 | None:intergenic | 55.0% | |
| TGATCCTGTTCATGGACCCG+TGG | + | chr4.4:27488579-27488598 | MS.gene059509:CDS | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | + | chr4.4:27491287-27491306 | MS.gene059509:intron | 55.0% |
| ACTGGGACCGCTACCACTGT+AGG | - | chr4.4:27490561-27490580 | None:intergenic | 60.0% | |
| AGCGCAAGCACCAGTGTGGA+GGG | - | chr4.4:27490490-27490509 | None:intergenic | 60.0% | |
| GTCACCACGAGTGTGCATCG+CGG | + | chr4.4:27490916-27490935 | MS.gene059509:intron | 60.0% | |
| TTGATGTCTTGCTGCCGGGC+CGG | + | chr4.4:27488810-27488829 | MS.gene059509:intron | 60.0% | |
| ACCACCGCGATGCACACTCG+TGG | - | chr4.4:27490923-27490942 | None:intergenic | 65.0% | |
| ACCACGAGTGTGCATCGCGG+TGG | + | chr4.4:27490919-27490938 | MS.gene059509:intron | 65.0% | |
| CAGCGCAAGCACCAGTGTGG+AGG | - | chr4.4:27490491-27490510 | None:intergenic | 65.0% | |
| CTCCACACTGGTGCTTGCGC+TGG | + | chr4.4:27490489-27490508 | MS.gene059509:intron | 65.0% | |
| GACCAGCGCAAGCACCAGTG+TGG | - | chr4.4:27490494-27490513 | None:intergenic | 65.0% | |
| TGATGTCTTGCTGCCGGGCC+GGG | + | chr4.4:27488811-27488830 | MS.gene059509:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 27488415 | 27492190 | 27488415 | ID=MS.gene059509 |
| chr4.4 | mRNA | 27488415 | 27492190 | 27488415 | ID=MS.gene059509.t1;Parent=MS.gene059509 |
| chr4.4 | exon | 27488415 | 27488600 | 27488415 | ID=MS.gene059509.t1.exon1;Parent=MS.gene059509.t1 |
| chr4.4 | CDS | 27488415 | 27488600 | 27488415 | ID=cds.MS.gene059509.t1;Parent=MS.gene059509.t1 |
| chr4.4 | exon | 27491717 | 27491819 | 27491717 | ID=MS.gene059509.t1.exon2;Parent=MS.gene059509.t1 |
| chr4.4 | CDS | 27491717 | 27491819 | 27491717 | ID=cds.MS.gene059509.t1;Parent=MS.gene059509.t1 |
| chr4.4 | exon | 27492036 | 27492190 | 27492036 | ID=MS.gene059509.t1.exon3;Parent=MS.gene059509.t1 |
| chr4.4 | CDS | 27492036 | 27492190 | 27492036 | ID=cds.MS.gene059509.t1;Parent=MS.gene059509.t1 |
| Gene Sequence |
| Protein sequence |
