Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56418.t1 | XP_003607891.1 | 96.7 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 7.90E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56418.t1 | O14155 | 51.3 | 115 | 53 | 2 | 38 | 152 | 5 | 116 | 9.3e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56418.t1 | Q2MGQ1 | 96.7 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 5.7e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059837 | MS.gene56418 | 0.82102 | 5.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56418.t1 | MTR_4g084120 | 96.711 | 152 | 3 | 1 | 1 | 152 | 1 | 150 | 5.68e-107 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56418.t1 | AT1G21065 | 79.688 | 128 | 26 | 0 | 25 | 152 | 67 | 194 | 9.64e-75 | 223 |
Find 37 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGAACAGGATCTTTC+TGG | 0.116045 | 4.4:+28796391 | MS.gene56418:CDS |
| TGCTGCGCTTTCACGCTTAA+TGG | 0.223647 | 4.4:-28796161 | None:intergenic |
| TTAAGCTTTCCATTTGTAAT+TGG | 0.251097 | 4.4:-28798196 | None:intergenic |
| GATTTACCTATAGACGTTCT+TGG | 0.290255 | 4.4:+28798256 | MS.gene56418:CDS |
| CTGAATCCACCGCTCCCAAA+TGG | 0.374424 | 4.4:+28796213 | MS.gene56418:CDS |
| CATATTAAGTCATCAATGTT+TGG | 0.383226 | 4.4:+28798071 | MS.gene56418:CDS |
| AATTCGATTGAGGAATGTTT+CGG | 0.407385 | 4.4:-28796605 | None:intergenic |
| TTCAGGATACCAATTACAAA+TGG | 0.444301 | 4.4:+28798187 | MS.gene56418:intron |
| GCTTGACCAAGAACGTCTAT+AGG | 0.458750 | 4.4:-28798262 | None:intergenic |
| AGATGACAGCCGCGTTTGTA+AGG | 0.461854 | 4.4:-28796260 | None:intergenic |
| TGCAGGGGCCATCTGCACCT+TGG | 0.473611 | 4.4:+28796714 | MS.gene56418:intron |
| CCCTCTAGAGTGTGCTTCCA+AGG | 0.475370 | 4.4:-28796731 | None:intergenic |
| TGAATCCACCGCTCCCAAAT+GGG | 0.475393 | 4.4:+28796214 | MS.gene56418:CDS |
| GATAGCGAAAGAAATTGAAC+AGG | 0.480863 | 4.4:+28796381 | MS.gene56418:intron |
| CTGTCATCTTGTTACTCCCA+AGG | 0.510680 | 4.4:+28796274 | MS.gene56418:CDS |
| GCTTAACATGGGAACCTGGC+AGG | 0.523728 | 4.4:+28798213 | MS.gene56418:CDS |
| CTGGGCCCATTTGGGAGCGG+TGG | 0.526538 | 4.4:-28796219 | None:intergenic |
| GAAAGCTTAACATGGGAACC+TGG | 0.533663 | 4.4:+28798209 | MS.gene56418:CDS |
| ATATATACTCACAGAAGAGA+TGG | 0.543708 | 4.4:-28796432 | None:intergenic |
| AGTAAACGATGTTACCTGCC+AGG | 0.545004 | 4.4:-28798227 | None:intergenic |
| TTTCTGGGCCCATTTGGGAG+CGG | 0.545582 | 4.4:-28796222 | None:intergenic |
| ATTGATGACTTAATATGAGC+CGG | 0.551506 | 4.4:-28798065 | None:intergenic |
| GTGTGCTTCCAAGGTGCAGA+TGG | 0.554212 | 4.4:-28796722 | None:intergenic |
| CTTGAAGACAAAAGAATCCA+TGG | 0.555822 | 4.4:+28796190 | MS.gene56418:CDS |
| CCTCGGGAACAATTCGATTG+AGG | 0.564302 | 4.4:-28796615 | None:intergenic |
| CCTTGGAAGCACACTCTAGA+GGG | 0.564381 | 4.4:+28796731 | MS.gene56418:CDS |
| TGTAGGTCATGATGACATGC+CGG | 0.579488 | 4.4:+28798046 | MS.gene56418:intron |
| TATATACTCACAGAAGAGAT+GGG | 0.591373 | 4.4:-28796431 | None:intergenic |
| TTTGTAAGGTGGTAGAGCGA+TGG | 0.592048 | 4.4:-28796246 | None:intergenic |
| GGGAGCGGTGGATTCAGCCA+TGG | 0.593135 | 4.4:-28796207 | None:intergenic |
| TACAAATGGAAAGCTTAACA+TGG | 0.595390 | 4.4:+28798201 | MS.gene56418:CDS |
| TGACAGCCGCGTTTGTAAGG+TGG | 0.611847 | 4.4:-28796257 | None:intergenic |
| CCTCAATCGAATTGTTCCCG+AGG | 0.630614 | 4.4:+28796615 | MS.gene56418:CDS |
| ACCTTGGAAGCACACTCTAG+AGG | 0.633350 | 4.4:+28796730 | MS.gene56418:CDS |
| GATCTTTCTGGATTCAAGTG+CGG | 0.636539 | 4.4:+28796403 | MS.gene56418:CDS |
| ACAAATGGAAAGCTTAACAT+GGG | 0.648618 | 4.4:+28798202 | MS.gene56418:CDS |
| GCTCTACCACCTTACAAACG+CGG | 0.803139 | 4.4:+28796251 | MS.gene56418:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATGAAAAATGAAAT+TGG | - | chr4.4:28796331-28796350 | None:intergenic | 15.0% |
| !! | AGTAAATGAAAAATGAAATT+GGG | - | chr4.4:28796330-28796349 | None:intergenic | 15.0% |
| !! | ATGAATGAATAAACAAATAT+TGG | - | chr4.4:28796653-28796672 | None:intergenic | 15.0% |
| !! | TAAAACTTTAAATATGATCA+AGG | + | chr4.4:28796795-28796814 | MS.gene56418:intron | 15.0% |
| !! | TATAACAAAAGAAAAAACAA+AGG | - | chr4.4:28796964-28796983 | None:intergenic | 15.0% |
| !! | AAATATTTAGATTCTGTTCT+TGG | + | chr4.4:28797725-28797744 | MS.gene56418:intron | 20.0% |
| !! | AAGCAAAAAAATGCTTAAAA+TGG | - | chr4.4:28797827-28797846 | None:intergenic | 20.0% |
| !! | AATAAACAAATATTGGTGAA+TGG | - | chr4.4:28796646-28796665 | None:intergenic | 20.0% |
| !! | AATATTTAGATTCTGTTCTT+GGG | + | chr4.4:28797726-28797745 | MS.gene56418:intron | 20.0% |
| !! | ACTTCATTATAGTTTATAGT+AGG | - | chr4.4:28797462-28797481 | None:intergenic | 20.0% |
| !! | ATAGTTTATAGTAGGTATAA+TGG | - | chr4.4:28797454-28797473 | None:intergenic | 20.0% |
| !! | GTAAATGAAAAATGAAATTG+GGG | - | chr4.4:28796329-28796348 | None:intergenic | 20.0% |
| !! | TAAATGAAAAATGAAATTGG+GGG | - | chr4.4:28796328-28796347 | None:intergenic | 20.0% |
| !! | TAGTTTATAGTAGGTATAAT+GGG | - | chr4.4:28797453-28797472 | None:intergenic | 20.0% |
| ! | AAAAGAAAAAACAAAGGCAA+AGG | - | chr4.4:28796958-28796977 | None:intergenic | 25.0% |
| ! | AAAATTGTGAGATTGAGATT+GGG | - | chr4.4:28796305-28796324 | None:intergenic | 25.0% |
| ! | ACCAATAAATTAAACTGAGA+TGG | - | chr4.4:28797697-28797716 | None:intergenic | 25.0% |
| ! | ATAAACGCTAATCATATAAG+TGG | - | chr4.4:28797011-28797030 | None:intergenic | 25.0% |
| ! | ATATTTAGATTCTGTTCTTG+GGG | + | chr4.4:28797727-28797746 | MS.gene56418:intron | 25.0% |
| ! | ATCTGGAGAAAAAAAATAGT+TGG | - | chr4.4:28796364-28796383 | None:intergenic | 25.0% |
| ! | CATATTAAGTCATCAATGTT+TGG | + | chr4.4:28798071-28798090 | MS.gene56418:CDS | 25.0% |
| ! | CTTAATATCCAAACACAAAT+TGG | - | chr4.4:28797800-28797819 | None:intergenic | 25.0% |
| ! | GAAAACACGTAAATTATACT+TGG | - | chr4.4:28797966-28797985 | None:intergenic | 25.0% |
| ! | TCACTAGATAAACTCATATA+AGG | - | chr4.4:28796842-28796861 | None:intergenic | 25.0% |
| ! | TCTGGAGAAAAAAAATAGTT+GGG | - | chr4.4:28796363-28796382 | None:intergenic | 25.0% |
| ! | TCTTGTATATAACATTGCTT+CGG | + | chr4.4:28797299-28797318 | MS.gene56418:intron | 25.0% |
| ! | TTAAGCTTTCCATTTGTAAT+TGG | - | chr4.4:28798199-28798218 | None:intergenic | 25.0% |
| ! | TTTAAATATGATCAAGGAGT+AGG | + | chr4.4:28796801-28796820 | MS.gene56418:intron | 25.0% |
| !! | ATTTGATAGTCTAAGTAAAC+TGG | - | chr4.4:28797900-28797919 | None:intergenic | 25.0% |
| !! | TCCATCTCAGTTTAATTTAT+TGG | + | chr4.4:28797693-28797712 | MS.gene56418:intron | 25.0% |
| AAGAGAAAATTGCATTACTG+AGG | - | chr4.4:28797083-28797102 | None:intergenic | 30.0% | |
| AATGGTTCTTCAAATGATAG+AGG | - | chr4.4:28797163-28797182 | None:intergenic | 30.0% | |
| AATTCGATTGAGGAATGTTT+CGG | - | chr4.4:28796608-28796627 | None:intergenic | 30.0% | |
| AATTTGTGCTGAAATGAAGT+TGG | + | chr4.4:28796509-28796528 | MS.gene56418:intron | 30.0% | |
| ACAAATGGAAAGCTTAACAT+GGG | + | chr4.4:28798202-28798221 | MS.gene56418:CDS | 30.0% | |
| ACTATCAAATTTGACAACCT+TGG | + | chr4.4:28797910-28797929 | MS.gene56418:intron | 30.0% | |
| ATATATACTCACAGAAGAGA+TGG | - | chr4.4:28796435-28796454 | None:intergenic | 30.0% | |
| CTGGAGAAAAAAAATAGTTG+GGG | - | chr4.4:28796362-28796381 | None:intergenic | 30.0% | |
| GAAAATTGTGAGATTGAGAT+TGG | - | chr4.4:28796306-28796325 | None:intergenic | 30.0% | |
| GAAGCAATGTTATATACAAG+AGG | - | chr4.4:28797300-28797319 | None:intergenic | 30.0% | |
| TACAAATGGAAAGCTTAACA+TGG | + | chr4.4:28798201-28798220 | MS.gene56418:CDS | 30.0% | |
| TATATACTCACAGAAGAGAT+GGG | - | chr4.4:28796434-28796453 | None:intergenic | 30.0% | |
| TGAAAATACAAGACATCAGT+AGG | - | chr4.4:28798171-28798190 | None:intergenic | 30.0% | |
| TGTTTAGTTGTTGCATGTTA+CGG | - | chr4.4:28797341-28797360 | None:intergenic | 30.0% | |
| TTACAATCAGAGTATGTGAA+TGG | - | chr4.4:28797181-28797200 | None:intergenic | 30.0% | |
| TTCAGGATACCAATTACAAA+TGG | + | chr4.4:28798187-28798206 | MS.gene56418:intron | 30.0% | |
| ! | ATGTCCGTTAATTTTGAACT+GGG | + | chr4.4:28797633-28797652 | MS.gene56418:intron | 30.0% |
| ! | ATTCTTTTGTCTTCAAGGTT+GGG | - | chr4.4:28796187-28796206 | None:intergenic | 30.0% |
| ! | ATTGATGACTTAATATGAGC+CGG | - | chr4.4:28798068-28798087 | None:intergenic | 30.0% |
| ! | CTTATTATGTAATTTGCACG+TGG | + | chr4.4:28797771-28797790 | MS.gene56418:intron | 30.0% |
| ! | GTAGTTTTTGTAAGCTATCA+TGG | - | chr4.4:28796917-28796936 | None:intergenic | 30.0% |
| ! | TACTGATGTCTTGTATTTTC+AGG | + | chr4.4:28798170-28798189 | MS.gene56418:intron | 30.0% |
| !!! | CTTTGGTTTTGCAATTTTGT+AGG | + | chr4.4:28798029-28798048 | MS.gene56418:intron | 30.0% |
| AACCAAAGACCATTATTGGT+TGG | - | chr4.4:28798017-28798036 | None:intergenic | 35.0% | |
| AACCATGATGTGTGTTGAAA+TGG | + | chr4.4:28797529-28797548 | MS.gene56418:intron | 35.0% | |
| AATTTAACTAGAGCAGAGGA+TGG | - | chr4.4:28797593-28797612 | None:intergenic | 35.0% | |
| ATCCAACCAATAATGGTCTT+TGG | + | chr4.4:28798012-28798031 | MS.gene56418:intron | 35.0% | |
| ATTGGTGAATGGTAAAACCT+CGG | - | chr4.4:28796635-28796654 | None:intergenic | 35.0% | |
| ATTTCAACACACATCATGGT+TGG | - | chr4.4:28797530-28797549 | None:intergenic | 35.0% | |
| CAACTCAATTACACGCTTAT+AGG | - | chr4.4:28797034-28797053 | None:intergenic | 35.0% | |
| CAATGTGAATCCATTTGCAA+AGG | + | chr4.4:28797398-28797417 | MS.gene56418:intron | 35.0% | |
| CTCTAGTTAAATTGATCCCT+GGG | + | chr4.4:28797600-28797619 | MS.gene56418:intron | 35.0% | |
| CTTGAAGACAAAAGAATCCA+TGG | + | chr4.4:28796190-28796209 | MS.gene56418:CDS | 35.0% | |
| CTTTGCAAACTTGCAACAAT+GGG | - | chr4.4:28797504-28797523 | None:intergenic | 35.0% | |
| GAAATTGAACAGGATCTTTC+TGG | + | chr4.4:28796391-28796410 | MS.gene56418:CDS | 35.0% | |
| GATAGCGAAAGAAATTGAAC+AGG | + | chr4.4:28796381-28796400 | MS.gene56418:intron | 35.0% | |
| GATCAATTTAACTAGAGCAG+AGG | - | chr4.4:28797597-28797616 | None:intergenic | 35.0% | |
| GATTTACCTATAGACGTTCT+TGG | + | chr4.4:28798256-28798275 | MS.gene56418:CDS | 35.0% | |
| GCAAAACCAAAGACCATTAT+TGG | - | chr4.4:28798021-28798040 | None:intergenic | 35.0% | |
| GCATCCCAGTTCAAAATTAA+CGG | - | chr4.4:28797640-28797659 | None:intergenic | 35.0% | |
| GCATTGTTACGTAATAACCA+AGG | - | chr4.4:28797930-28797949 | None:intergenic | 35.0% | |
| GTTCAATTTCTTTCGCTATC+TGG | - | chr4.4:28796381-28796400 | None:intergenic | 35.0% | |
| GTTTAGTTGTTGCATGTTAC+GGG | - | chr4.4:28797340-28797359 | None:intergenic | 35.0% | |
| TCTTTGCAAACTTGCAACAA+TGG | - | chr4.4:28797505-28797524 | None:intergenic | 35.0% | |
| TGAGATGTTAGATGCATTTG+TGG | - | chr4.4:28797380-28797399 | None:intergenic | 35.0% | |
| TTACGTAACAATGCTGTTGT+TGG | + | chr4.4:28797936-28797955 | MS.gene56418:intron | 35.0% | |
| TTTAGTTGTTGCATGTTACG+GGG | - | chr4.4:28797339-28797358 | None:intergenic | 35.0% | |
| TTTCAACACACATCATGGTT+GGG | - | chr4.4:28797529-28797548 | None:intergenic | 35.0% | |
| ! | AAGACCATTATTGGTTGGAT+AGG | - | chr4.4:28798012-28798031 | None:intergenic | 35.0% |
| ! | AGACCATTATTGGTTGGATA+GGG | - | chr4.4:28798011-28798030 | None:intergenic | 35.0% |
| ! | ATTGAGTTGCTTATCCAAAG+AGG | + | chr4.4:28797045-28797064 | MS.gene56418:intron | 35.0% |
| ! | CATGGATTCTTTTGTCTTCA+AGG | - | chr4.4:28796192-28796211 | None:intergenic | 35.0% |
| ! | CATGTCCGTTAATTTTGAAC+TGG | + | chr4.4:28797632-28797651 | MS.gene56418:intron | 35.0% |
| ! | GATTCTTTTGTCTTCAAGGT+TGG | - | chr4.4:28796188-28796207 | None:intergenic | 35.0% |
| ! | TAATTTTGAACTGGGATGCT+AGG | + | chr4.4:28797641-28797660 | MS.gene56418:intron | 35.0% |
| ! | TGAAAATTTTGTGTCCTGCA+GGG | + | chr4.4:28796698-28796717 | MS.gene56418:intron | 35.0% |
| ! | TTGAAAATTTTGTGTCCTGC+AGG | + | chr4.4:28796697-28796716 | MS.gene56418:intron | 35.0% |
| ! | TTGAGTTGCTTATCCAAAGA+GGG | + | chr4.4:28797046-28797065 | MS.gene56418:intron | 35.0% |
| AGATTACACTAGACCAAACC+AGG | - | chr4.4:28797668-28797687 | None:intergenic | 40.0% | |
| AGTTGAATTGAGCTCCAATG+AGG | + | chr4.4:28797554-28797573 | MS.gene56418:intron | 40.0% | |
| ATTGTGAGATTGAGATTGGG+AGG | - | chr4.4:28796302-28796321 | None:intergenic | 40.0% | |
| CAAATGATAGAGGCTTTCTG+TGG | - | chr4.4:28797153-28797172 | None:intergenic | 40.0% | |
| CGTGGTATCCAATTTGTGTT+TGG | + | chr4.4:28797789-28797808 | MS.gene56418:intron | 40.0% | |
| GAGTTTACAAATCGAGCCTA+CGG | + | chr4.4:28797866-28797885 | MS.gene56418:intron | 40.0% | |
| GATCTTTCTGGATTCAAGTG+CGG | + | chr4.4:28796403-28796422 | MS.gene56418:CDS | 40.0% | |
| GCTCTAGTTAAATTGATCCC+TGG | + | chr4.4:28797599-28797618 | MS.gene56418:intron | 40.0% | |
| GGTGGAACATACAACAGATT+GGG | - | chr4.4:28797990-28798009 | None:intergenic | 40.0% | |
| GTGAATCCATTTGCAAAGGA+GGG | + | chr4.4:28797402-28797421 | MS.gene56418:intron | 40.0% | |
| GTGGAACATACAACAGATTG+GGG | - | chr4.4:28797989-28798008 | None:intergenic | 40.0% | |
| TAAACTGGTGAAATCTCCGT+AGG | - | chr4.4:28797885-28797904 | None:intergenic | 40.0% | |
| TAATCAGTTAGTTAGTGCGC+TGG | + | chr4.4:28797233-28797252 | MS.gene56418:intron | 40.0% | |
| TGAATCCATTTGCAAAGGAG+GGG | + | chr4.4:28797403-28797422 | MS.gene56418:intron | 40.0% | |
| TGGAACATACAACAGATTGG+GGG | - | chr4.4:28797988-28798007 | None:intergenic | 40.0% | |
| TGTGAATCCATTTGCAAAGG+AGG | + | chr4.4:28797401-28797420 | MS.gene56418:intron | 40.0% | |
| TTGGTGAATGGTAAAACCTC+GGG | - | chr4.4:28796634-28796653 | None:intergenic | 40.0% | |
| ! | GAAAATTTTGTGTCCTGCAG+GGG | + | chr4.4:28796699-28796718 | MS.gene56418:intron | 40.0% |
| ! | TGCCATTTCAACACACATCA+TGG | - | chr4.4:28797534-28797553 | None:intergenic | 40.0% |
| AGCTCATTCATGAGCTAAGG+AGG | - | chr4.4:28797276-28797295 | None:intergenic | 45.0% | |
| AGTAAACGATGTTACCTGCC+AGG | - | chr4.4:28798230-28798249 | None:intergenic | 45.0% | |
| ATTGAGATTGGGAGGAACCT+TGG | - | chr4.4:28796294-28796313 | None:intergenic | 45.0% | |
| CCACCCTATCCAACCAATAA+TGG | + | chr4.4:28798005-28798024 | MS.gene56418:intron | 45.0% | |
| CTGTCATCTTGTTACTCCCA+AGG | + | chr4.4:28796274-28796293 | MS.gene56418:CDS | 45.0% | |
| GAAAGCTTAACATGGGAACC+TGG | + | chr4.4:28798209-28798228 | MS.gene56418:CDS | 45.0% | |
| GCTTGACCAAGAACGTCTAT+AGG | - | chr4.4:28798265-28798284 | None:intergenic | 45.0% | |
| GGACATGTTTACGAATCCCA+GGG | - | chr4.4:28797619-28797638 | None:intergenic | 45.0% | |
| GGGTGGAACATACAACAGAT+TGG | - | chr4.4:28797991-28798010 | None:intergenic | 45.0% | |
| GGTAGCTCATTCATGAGCTA+AGG | - | chr4.4:28797279-28797298 | None:intergenic | 45.0% | |
| TAACTAGAGCAGAGGATGGT+GGG | - | chr4.4:28797589-28797608 | None:intergenic | 45.0% | |
| TCAAGGAGTAGGAGCAAGTT+TGG | + | chr4.4:28796812-28796831 | MS.gene56418:intron | 45.0% | |
| TGAGCTCCAATGAGGAAAGT+CGG | + | chr4.4:28797562-28797581 | MS.gene56418:intron | 45.0% | |
| TGTAGGTCATGATGACATGC+CGG | + | chr4.4:28798046-28798065 | MS.gene56418:intron | 45.0% | |
| TTAACTAGAGCAGAGGATGG+TGG | - | chr4.4:28797590-28797609 | None:intergenic | 45.0% | |
| TTGAGATTGGGAGGAACCTT+GGG | - | chr4.4:28796293-28796312 | None:intergenic | 45.0% | |
| TTGCTTATCCAAAGAGGGTC+TGG | + | chr4.4:28797051-28797070 | MS.gene56418:intron | 45.0% | |
| TTTGTAAGGTGGTAGAGCGA+TGG | - | chr4.4:28796249-28796268 | None:intergenic | 45.0% | |
| ! | ATGGTTTTCTGGGCCCATTT+GGG | - | chr4.4:28796230-28796249 | None:intergenic | 45.0% |
| ! | CCATTATTGGTTGGATAGGG+TGG | - | chr4.4:28798008-28798027 | None:intergenic | 45.0% |
| ! | TGGTAGAGCGATGGTTTTCT+GGG | - | chr4.4:28796240-28796259 | None:intergenic | 45.0% |
| AGATGACAGCCGCGTTTGTA+AGG | - | chr4.4:28796263-28796282 | None:intergenic | 50.0% | |
| CCTCAATCGAATTGTTCCCG+AGG | + | chr4.4:28796615-28796634 | MS.gene56418:CDS | 50.0% | |
| CCTCGGGAACAATTCGATTG+AGG | - | chr4.4:28796618-28796637 | None:intergenic | 50.0% | |
| CGGACATGTTTACGAATCCC+AGG | - | chr4.4:28797620-28797639 | None:intergenic | 50.0% | |
| GCTCTACCACCTTACAAACG+CGG | + | chr4.4:28796251-28796270 | MS.gene56418:CDS | 50.0% | |
| GTGTTCCCCTCCTTTGCAAA+TGG | - | chr4.4:28797411-28797430 | None:intergenic | 50.0% | |
| TGAATCCACCGCTCCCAAAT+GGG | + | chr4.4:28796214-28796233 | MS.gene56418:CDS | 50.0% | |
| TGCTGCGCTTTCACGCTTAA+TGG | - | chr4.4:28796164-28796183 | None:intergenic | 50.0% | |
| ! | ACCTTGGAAGCACACTCTAG+AGG | + | chr4.4:28796730-28796749 | MS.gene56418:CDS | 50.0% |
| ! | CCTTGGAAGCACACTCTAGA+GGG | + | chr4.4:28796731-28796750 | MS.gene56418:CDS | 50.0% |
| ! | GATGGTTTTCTGGGCCCATT+TGG | - | chr4.4:28796231-28796250 | None:intergenic | 50.0% |
| ! | GTGGTAGAGCGATGGTTTTC+TGG | - | chr4.4:28796241-28796260 | None:intergenic | 50.0% |
| CTGAATCCACCGCTCCCAAA+TGG | + | chr4.4:28796213-28796232 | MS.gene56418:CDS | 55.0% | |
| GCTTAACATGGGAACCTGGC+AGG | + | chr4.4:28798213-28798232 | MS.gene56418:CDS | 55.0% | |
| GGCTAGATCCAGACCCTCTT+TGG | - | chr4.4:28797062-28797081 | None:intergenic | 55.0% | |
| GTGTGCTTCCAAGGTGCAGA+TGG | - | chr4.4:28796725-28796744 | None:intergenic | 55.0% | |
| TGAACTGGGATGCTAGGTCC+TGG | + | chr4.4:28797647-28797666 | MS.gene56418:intron | 55.0% | |
| TGACAGCCGCGTTTGTAAGG+TGG | - | chr4.4:28796260-28796279 | None:intergenic | 55.0% | |
| TGGGATGCTAGGTCCTGGTT+TGG | + | chr4.4:28797652-28797671 | MS.gene56418:intron | 55.0% | |
| TTTCTGGGCCCATTTGGGAG+CGG | - | chr4.4:28796225-28796244 | None:intergenic | 55.0% | |
| ! | GTGGGACCGACTTTCCTCAT+TGG | - | chr4.4:28797571-28797590 | None:intergenic | 55.0% |
| !! | CCCTCTAGAGTGTGCTTCCA+AGG | - | chr4.4:28796734-28796753 | None:intergenic | 55.0% |
| AAGGTGCAGATGGCCCCTGC+AGG | - | chr4.4:28796715-28796734 | None:intergenic | 65.0% | |
| TGCAGGGGCCATCTGCACCT+TGG | + | chr4.4:28796714-28796733 | MS.gene56418:intron | 65.0% | |
| ! | GGGAGCGGTGGATTCAGCCA+TGG | - | chr4.4:28796210-28796229 | None:intergenic | 65.0% |
| CTGGGCCCATTTGGGAGCGG+TGG | - | chr4.4:28796222-28796241 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28796128 | 28798291 | 28796128 | ID=MS.gene56418 |
| chr4.4 | mRNA | 28796128 | 28798291 | 28796128 | ID=MS.gene56418.t1;Parent=MS.gene56418 |
| chr4.4 | exon | 28796128 | 28796295 | 28796128 | ID=MS.gene56418.t1.exon1;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28796128 | 28796295 | 28796128 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| chr4.4 | exon | 28796382 | 28796442 | 28796382 | ID=MS.gene56418.t1.exon2;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28796382 | 28796442 | 28796382 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| chr4.4 | exon | 28796542 | 28796636 | 28796542 | ID=MS.gene56418.t1.exon3;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28796542 | 28796636 | 28796542 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| chr4.4 | exon | 28796719 | 28796752 | 28796719 | ID=MS.gene56418.t1.exon4;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28796719 | 28796752 | 28796719 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| chr4.4 | exon | 28798051 | 28798105 | 28798051 | ID=MS.gene56418.t1.exon5;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28798051 | 28798105 | 28798051 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| chr4.4 | exon | 28798192 | 28798291 | 28798192 | ID=MS.gene56418.t1.exon6;Parent=MS.gene56418.t1 |
| chr4.4 | CDS | 28798192 | 28798291 | 28798192 | ID=cds.MS.gene56418.t1;Parent=MS.gene56418.t1 |
| Gene Sequence |
| Protein sequence |
