Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56524.t1 | AES89947.1 | 97.4 | 537 | 14 | 0 | 3 | 539 | 4 | 540 | 5.40E-307 | 1062.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56524.t1 | Q75BF1 | 41.1 | 73 | 42 | 1 | 323 | 394 | 336 | 408 | 3.3e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56524.t1 | G7JG98 | 97.4 | 537 | 14 | 0 | 3 | 539 | 4 | 540 | 3.9e-307 | 1062.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56524.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060519 | MS.gene56524 | 0.813594 | 2.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56524.t1 | MTR_4g082140 | 97.212 | 538 | 15 | 0 | 2 | 539 | 3 | 540 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56524.t1 | AT1G26760 | 58.824 | 527 | 212 | 3 | 10 | 532 | 17 | 542 | 0.0 | 606 |
Find 127 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAGCTTGCTGAATTTAT+TGG | 0.149845 | 4.4:+30441168 | MS.gene56524:CDS |
| TGCGATGGAGAGGAGTATTT+TGG | 0.176280 | 4.4:+30441287 | MS.gene56524:CDS |
| GGTTAAGTTGTTGGCTATAT+TGG | 0.205927 | 4.4:+30441527 | MS.gene56524:CDS |
| TGCATGTACTCTTCTTCTTC+TGG | 0.230924 | 4.4:-30440673 | None:intergenic |
| AGATGCTGGGTCTTTGATTT+TGG | 0.274618 | 4.4:+30441251 | MS.gene56524:CDS |
| TTGTCTTAATAGATATTCTA+TGG | 0.274950 | 4.4:+30440984 | MS.gene56524:CDS |
| GTGTCACAAGACTAGGAATT+TGG | 0.280387 | 4.4:+30441389 | MS.gene56524:CDS |
| TGGCAGTGGTGGTGGAAATT+TGG | 0.287633 | 4.4:+30442154 | MS.gene56524:CDS |
| TCGCTATATTCGGAGGCTTA+TGG | 0.291838 | 4.4:+30441996 | MS.gene56524:CDS |
| ATGCGAGGCGGTTGCATGTT+GGG | 0.304086 | 4.4:+30441667 | MS.gene56524:CDS |
| TTTGCATTTCCCTCTGTAAC+CGG | 0.308465 | 4.4:+30440845 | MS.gene56524:CDS |
| AACAGCTATGCTTGATAATC+AGG | 0.308879 | 4.4:+30441023 | MS.gene56524:CDS |
| GATACTTGAGAGCTTCATTT+TGG | 0.314098 | 4.4:+30441973 | MS.gene56524:CDS |
| TTGGTTGGTAAATTGTCAAT+TGG | 0.325778 | 4.4:+30441408 | MS.gene56524:CDS |
| GATGAAAAGTTCTGTTGCTT+TGG | 0.329967 | 4.4:-30440707 | None:intergenic |
| AATCTCCTTCACTTCTTGCT+TGG | 0.343179 | 4.4:-30441856 | None:intergenic |
| TGGTTGGTAAATTGTCAATT+GGG | 0.350042 | 4.4:+30441409 | MS.gene56524:CDS |
| TTTGAGTGGGTTTCCTGGTA+AGG | 0.381766 | 4.4:+30441143 | MS.gene56524:CDS |
| AACGATGGATCTTTCTGATT+GGG | 0.387094 | 4.4:+30441119 | MS.gene56524:CDS |
| TGCTGTTGAGATTAGAAAAT+CGG | 0.393927 | 4.4:+30441191 | MS.gene56524:CDS |
| TTCACTTCACCAACATTCTC+AGG | 0.398380 | 4.4:-30441477 | None:intergenic |
| ACATGCAACCGCCTCGCATT+AGG | 0.405164 | 4.4:-30441663 | None:intergenic |
| TTTGATGGTGAAGTGGGTTA+GGG | 0.418282 | 4.4:-30440807 | None:intergenic |
| CGGAGAGGTGTATGAAAAGA+TGG | 0.420346 | 4.4:+30442021 | MS.gene56524:CDS |
| CTCTTATTCAAGGGAGAAAG+TGG | 0.422699 | 4.4:-30441759 | None:intergenic |
| AGGAAGAATAATGATTGTTA+TGG | 0.434601 | 4.4:+30441594 | MS.gene56524:CDS |
| AATGCGAGGCGGTTGCATGT+TGG | 0.436488 | 4.4:+30441666 | MS.gene56524:CDS |
| GAACGATGGATCTTTCTGAT+TGG | 0.437083 | 4.4:+30441118 | MS.gene56524:CDS |
| TTCAAGAGTCTTGTTTGTAA+AGG | 0.438253 | 4.4:+30440949 | MS.gene56524:CDS |
| TGGTTTGGTGTATAAGTTTG+AGG | 0.439146 | 4.4:+30441911 | MS.gene56524:CDS |
| ATTGTTATGGTGTTGGGCTA+TGG | 0.447041 | 4.4:+30441607 | MS.gene56524:CDS |
| CAGGGTGCTTAAGATCTTGA+TGG | 0.447688 | 4.4:+30442109 | MS.gene56524:CDS |
| CACCTGATGTTGATCTGTTT+AGG | 0.448074 | 4.4:+30441454 | MS.gene56524:CDS |
| TGTAAGAGGTGTAAGTTTGA+AGG | 0.453878 | 4.4:+30441819 | MS.gene56524:CDS |
| AGGGATGGATGTAGGTGGTT+TGG | 0.454334 | 4.4:+30441896 | MS.gene56524:CDS |
| GGAACTGTGAAATGCTTGTT+GGG | 0.457834 | 4.4:+30441052 | MS.gene56524:CDS |
| ATTGAGATTGGTATTGAAAG+AGG | 0.460526 | 4.4:+30441876 | MS.gene56524:CDS |
| TGAGGATGTTGAGATTGATA+TGG | 0.461021 | 4.4:+30441506 | MS.gene56524:CDS |
| AAAAGAATTGTCTGTGACAT+GGG | 0.463603 | 4.4:+30441782 | MS.gene56524:CDS |
| GATTGATATGGTTAAGTTGT+TGG | 0.464137 | 4.4:+30441518 | MS.gene56524:CDS |
| GGAATATGTTTCAATGGCAT+TGG | 0.464171 | 4.4:-30440743 | None:intergenic |
| ATGTAGTGGGAGGTGATCAC+AGG | 0.469829 | 4.4:+30442090 | MS.gene56524:CDS |
| AAAGGCGGTGGCAGTGGTGG+TGG | 0.469890 | 4.4:+30442146 | MS.gene56524:CDS |
| GAAGTGAAGGAGATTGAGAT+TGG | 0.472610 | 4.4:+30441864 | MS.gene56524:CDS |
| TGCGAGGCGGTTGCATGTTG+GGG | 0.475570 | 4.4:+30441668 | MS.gene56524:CDS |
| ATAATGATTGTTATGGTGTT+GGG | 0.477794 | 4.4:+30441601 | MS.gene56524:CDS |
| AAGTTAGCAAGAGAAGTGTA+TGG | 0.484594 | 4.4:+30442194 | MS.gene56524:CDS |
| GGGAAGGAGAATTCCGGCAT+TGG | 0.484683 | 4.4:+30442043 | MS.gene56524:CDS |
| CACGAGTGATTTATAAATGA+AGG | 0.487421 | 4.4:-30441636 | None:intergenic |
| GAAATGGGAATATGTTTCAA+TGG | 0.488782 | 4.4:-30440749 | None:intergenic |
| GGGTGCAAAGAGTAATGAAA+TGG | 0.491302 | 4.4:-30440765 | None:intergenic |
| AATAATGATTGTTATGGTGT+TGG | 0.491400 | 4.4:+30441600 | MS.gene56524:CDS |
| AAGAGAAAAGGCGGTGGCAG+TGG | 0.492447 | 4.4:+30442140 | MS.gene56524:CDS |
| GGGAACTGTGAAATGCTTGT+TGG | 0.492814 | 4.4:+30441051 | MS.gene56524:CDS |
| TTAGAAAATCGGAGATTAGT+GGG | 0.496484 | 4.4:+30441202 | MS.gene56524:CDS |
| GTAAGAGGTGTAAGTTTGAA+GGG | 0.497871 | 4.4:+30441820 | MS.gene56524:CDS |
| AAGAGAAGTGTATGGGAAGG+TGG | 0.498751 | 4.4:+30442202 | MS.gene56524:CDS |
| GTTCTGTTGCTTTGGATCTG+AGG | 0.499276 | 4.4:-30440699 | None:intergenic |
| GGATTCATTGCAAGTGTAAG+AGG | 0.499575 | 4.4:+30441805 | MS.gene56524:CDS |
| TTGAGATTGGTATTGAAAGA+GGG | 0.501722 | 4.4:+30441877 | MS.gene56524:CDS |
| TTGAGGAACAAATGAAGAGA+TGG | 0.502193 | 4.4:+30441928 | MS.gene56524:CDS |
| GCTTCAAGAGATTTGAAAGC+TGG | 0.503483 | 4.4:+30441708 | MS.gene56524:CDS |
| ATGGAGGAATTGAAGAGAAA+AGG | 0.506698 | 4.4:+30442128 | MS.gene56524:CDS |
| AAGATGGGGAAGGAGAATTC+CGG | 0.510697 | 4.4:+30442037 | MS.gene56524:CDS |
| ATTAGAAAATCGGAGATTAG+TGG | 0.510852 | 4.4:+30441201 | MS.gene56524:CDS |
| GGAGAGGTGTATGAAAAGAT+GGG | 0.512728 | 4.4:+30442022 | MS.gene56524:CDS |
| ATTGTCAATTGGGGAAAATG+AGG | 0.513846 | 4.4:+30441419 | MS.gene56524:CDS |
| TTGCATTTCCCTCTGTAACC+GGG | 0.518142 | 4.4:+30440846 | MS.gene56524:CDS |
| ATATTCGGAGGCTTATGGTT+CGG | 0.520594 | 4.4:+30442001 | MS.gene56524:CDS |
| GCAAGCTCAGGAGCCTTACC+AGG | 0.521541 | 4.4:-30441156 | None:intergenic |
| GGTTACTAAGGCGGTTGCGA+TGG | 0.521998 | 4.4:+30441272 | MS.gene56524:CDS |
| GGTTGGTAAATTGTCAATTG+GGG | 0.523687 | 4.4:+30441410 | MS.gene56524:CDS |
| ATGAAGAGATGGAAGGTGAG+GGG | 0.523693 | 4.4:+30441939 | MS.gene56524:CDS |
| AAATCGGAGATTAGTGGGAG+GGG | 0.525178 | 4.4:+30441207 | MS.gene56524:CDS |
| AGGATACTCAATTAGTTATG+TGG | 0.529999 | 4.4:+30441328 | MS.gene56524:CDS |
| CCAATAAATTCAGCAAGCTC+AGG | 0.530739 | 4.4:-30441168 | None:intergenic |
| AGCAAGAGAAGTGTATGGGA+AGG | 0.541807 | 4.4:+30442199 | MS.gene56524:CDS |
| TGGTGAAGTGGGTTAGGGTG+TGG | 0.546740 | 4.4:-30440802 | None:intergenic |
| GGCCTAAACAGATCAACATC+AGG | 0.547253 | 4.4:-30441456 | None:intergenic |
| GGTGCAAAGAGTAATGAAAT+GGG | 0.547363 | 4.4:-30440764 | None:intergenic |
| TGATAGCATTACAGATGTAG+TGG | 0.547590 | 4.4:+30442076 | MS.gene56524:CDS |
| TCAACCACTGCATCCAATGC+CGG | 0.554486 | 4.4:-30442056 | None:intergenic |
| AGAAAAGGCGGTGGCAGTGG+TGG | 0.555153 | 4.4:+30442143 | MS.gene56524:CDS |
| TAGGGTGTGGAAGAGAAAGA+TGG | 0.559673 | 4.4:-30440789 | None:intergenic |
| AATGAAGAGATGGAAGGTGA+GGG | 0.561622 | 4.4:+30441938 | MS.gene56524:CDS |
| TGCTTCGGCCCGGTTACAGA+GGG | 0.564386 | 4.4:-30440854 | None:intergenic |
| AAAATCGGAGATTAGTGGGA+GGG | 0.565262 | 4.4:+30441206 | MS.gene56524:CDS |
| ATTGAAAGAGGGATGGATGT+AGG | 0.565884 | 4.4:+30441888 | MS.gene56524:CDS |
| CACAAGACTAGGAATTTGGT+TGG | 0.568604 | 4.4:+30441393 | MS.gene56524:CDS |
| TGAAGAGATGGAAGGTGAGG+GGG | 0.569302 | 4.4:+30441940 | MS.gene56524:CDS |
| GATTGGTATTGAAAGAGGGA+TGG | 0.569642 | 4.4:+30441881 | MS.gene56524:CDS |
| AGTTAGCAAGAGAAGTGTAT+GGG | 0.577336 | 4.4:+30442195 | MS.gene56524:CDS |
| CTGTTTAGGCCTGAGAATGT+TGG | 0.579614 | 4.4:+30441468 | MS.gene56524:CDS |
| GATAGCATTACAGATGTAGT+GGG | 0.579758 | 4.4:+30442077 | MS.gene56524:CDS |
| AAATGAAGAGATGGAAGGTG+AGG | 0.581313 | 4.4:+30441937 | MS.gene56524:CDS |
| TGGTGGTGGAAATTTGGAGA+TGG | 0.584813 | 4.4:+30442160 | MS.gene56524:CDS |
| GGTGTATGAAAAGATGGGGA+AGG | 0.584919 | 4.4:+30442027 | MS.gene56524:CDS |
| AAAACTACGCGAATTCAACT+CGG | 0.587152 | 4.4:+30440882 | MS.gene56524:CDS |
| TCAATTGGGGAAAATGAGGA+TGG | 0.590682 | 4.4:+30441423 | MS.gene56524:CDS |
| GTTATCCAAGCAAGAAGTGA+AGG | 0.591908 | 4.4:+30441851 | MS.gene56524:CDS |
| AATTCCGGCATTGGATGCAG+TGG | 0.593389 | 4.4:+30442052 | MS.gene56524:CDS |
| GGTGTGGAAGAGAAAGATGG+TGG | 0.593731 | 4.4:-30440786 | None:intergenic |
| ATGCTTGATAATCAGGCAAG+TGG | 0.595972 | 4.4:+30441030 | MS.gene56524:CDS |
| GAAAGAGGGATGGATGTAGG+TGG | 0.596582 | 4.4:+30441891 | MS.gene56524:CDS |
| TAAGAGGTGTAAGTTTGAAG+GGG | 0.596628 | 4.4:+30441821 | MS.gene56524:CDS |
| TTGCTTCGGCCCGGTTACAG+AGG | 0.600409 | 4.4:-30440855 | None:intergenic |
| GGGAGGTAAAGATTTGAGTG+AGG | 0.601669 | 4.4:+30441308 | MS.gene56524:CDS |
| TTTATCGAGGAGTGGAACGA+TGG | 0.605114 | 4.4:+30441104 | MS.gene56524:CDS |
| AAAGAATTGTCTGTGACATG+GGG | 0.611357 | 4.4:+30441783 | MS.gene56524:CDS |
| GAAAAGAATTGTCTGTGACA+TGG | 0.612754 | 4.4:+30441781 | MS.gene56524:CDS |
| CTAAGGCGGTTGCGATGGAG+AGG | 0.616650 | 4.4:+30441277 | MS.gene56524:CDS |
| TGCTTGATAATCAGGCAAGT+GGG | 0.618775 | 4.4:+30441031 | MS.gene56524:CDS |
| CGGAGGCTTATGGTTCGGAG+AGG | 0.648399 | 4.4:+30442006 | MS.gene56524:CDS |
| ACTCGTGTTGTCCTAATGCG+AGG | 0.649170 | 4.4:+30441652 | MS.gene56524:CDS |
| GAGGAATTGAAGAGAAAAGG+CGG | 0.653690 | 4.4:+30442131 | MS.gene56524:CDS |
| GGAACAAATGAAGAGATGGA+AGG | 0.654855 | 4.4:+30441932 | MS.gene56524:CDS |
| GAGAGGTGTATGAAAAGATG+GGG | 0.655954 | 4.4:+30442023 | MS.gene56524:CDS |
| TGTAGTGGGAGGTGATCACA+GGG | 0.656015 | 4.4:+30442091 | MS.gene56524:CDS |
| GTGTGGAAGAGAAAGATGGT+GGG | 0.664953 | 4.4:-30440785 | None:intergenic |
| GGTGCTTAAGATCTTGATGG+AGG | 0.683661 | 4.4:+30442112 | MS.gene56524:CDS |
| AGCATTACAGATGTAGTGGG+AGG | 0.687102 | 4.4:+30442080 | MS.gene56524:CDS |
| GAAAATCGGAGATTAGTGGG+AGG | 0.689320 | 4.4:+30441205 | MS.gene56524:CDS |
| AAGAATTGTCTGTGACATGG+GGG | 0.694508 | 4.4:+30441784 | MS.gene56524:CDS |
| GAATTGAAGAGAAAAGGCGG+TGG | 0.699050 | 4.4:+30442134 | MS.gene56524:CDS |
| TGGTGAAGTGAATTCAAGTG+AGG | 0.701735 | 4.4:+30441488 | MS.gene56524:CDS |
| CGTGTTGTCCTAATGCGAGG+CGG | 0.716928 | 4.4:+30441655 | MS.gene56524:CDS |
| GGATGTTAATTCTCTCACTG+AGG | 0.729479 | 4.4:+30441548 | MS.gene56524:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCTTAATAGATATTCTA+TGG | + | chr4.4:30440984-30441003 | MS.gene56524:CDS | 20.0% |
| !!! | AAAAGTTTGAATTTTTATCG+AGG | + | chr4.4:30441091-30441110 | MS.gene56524:CDS | 20.0% |
| !!! | AATTCTTTTCTCTTATTCAA+GGG | - | chr4.4:30441771-30441790 | None:intergenic | 20.0% |
| ! | AATAATGATTGTTATGGTGT+TGG | + | chr4.4:30441600-30441619 | MS.gene56524:CDS | 25.0% |
| ! | AGGAAGAATAATGATTGTTA+TGG | + | chr4.4:30441594-30441613 | MS.gene56524:CDS | 25.0% |
| ! | ATAATGATTGTTATGGTGTT+GGG | + | chr4.4:30441601-30441620 | MS.gene56524:CDS | 25.0% |
| !! | CAATTCTTTTCTCTTATTCA+AGG | - | chr4.4:30441772-30441791 | None:intergenic | 25.0% |
| AAAAGAATTGTCTGTGACAT+GGG | + | chr4.4:30441782-30441801 | MS.gene56524:CDS | 30.0% | |
| AGGATACTCAATTAGTTATG+TGG | + | chr4.4:30441328-30441347 | MS.gene56524:CDS | 30.0% | |
| ATTAGAAAATCGGAGATTAG+TGG | + | chr4.4:30441201-30441220 | MS.gene56524:CDS | 30.0% | |
| CACGAGTGATTTATAAATGA+AGG | - | chr4.4:30441639-30441658 | None:intergenic | 30.0% | |
| GAAATGGGAATATGTTTCAA+TGG | - | chr4.4:30440752-30440771 | None:intergenic | 30.0% | |
| TGCTGTTGAGATTAGAAAAT+CGG | + | chr4.4:30441191-30441210 | MS.gene56524:CDS | 30.0% | |
| TTAGAAAATCGGAGATTAGT+GGG | + | chr4.4:30441202-30441221 | MS.gene56524:CDS | 30.0% | |
| ! | AACTTTTCATCAGAGAAGAA+TGG | + | chr4.4:30440719-30440738 | MS.gene56524:CDS | 30.0% |
| ! | ATTGAGATTGGTATTGAAAG+AGG | + | chr4.4:30441876-30441895 | MS.gene56524:CDS | 30.0% |
| ! | GATTGATATGGTTAAGTTGT+TGG | + | chr4.4:30441518-30441537 | MS.gene56524:CDS | 30.0% |
| ! | GTGATTTATGAAGCTTTTGA+TGG | - | chr4.4:30440825-30440844 | None:intergenic | 30.0% |
| ! | TTGAGATTGGTATTGAAAGA+GGG | + | chr4.4:30441877-30441896 | MS.gene56524:CDS | 30.0% |
| ! | TTTGAATTTTTATCGAGGAG+TGG | + | chr4.4:30441096-30441115 | MS.gene56524:CDS | 30.0% |
| !! | TGGTTGGTAAATTGTCAATT+GGG | + | chr4.4:30441409-30441428 | MS.gene56524:CDS | 30.0% |
| !! | TTAAAAAGTGTCACAAGACT+AGG | + | chr4.4:30441382-30441401 | MS.gene56524:CDS | 30.0% |
| !! | TTCAAGAGTCTTGTTTGTAA+AGG | + | chr4.4:30440949-30440968 | MS.gene56524:CDS | 30.0% |
| !! | TTCATTTTGGTCGCTATATT+CGG | + | chr4.4:30441986-30442005 | MS.gene56524:CDS | 30.0% |
| !! | TTGGTTGGTAAATTGTCAAT+TGG | + | chr4.4:30441408-30441427 | MS.gene56524:CDS | 30.0% |
| !!! | GTCTTTGATTTTGGTTACTA+AGG | + | chr4.4:30441260-30441279 | MS.gene56524:CDS | 30.0% |
| !!! | TTTGATTTTGGTTACTAAGG+CGG | + | chr4.4:30441263-30441282 | MS.gene56524:CDS | 30.0% |
| AAAACTACGCGAATTCAACT+CGG | + | chr4.4:30440882-30440901 | MS.gene56524:CDS | 35.0% | |
| AAAGAATTGTCTGTGACATG+GGG | + | chr4.4:30441783-30441802 | MS.gene56524:CDS | 35.0% | |
| AACGATGGATCTTTCTGATT+GGG | + | chr4.4:30441119-30441138 | MS.gene56524:CDS | 35.0% | |
| ATGGAGGAATTGAAGAGAAA+AGG | + | chr4.4:30442128-30442147 | MS.gene56524:CDS | 35.0% | |
| ATTGTCAATTGGGGAAAATG+AGG | + | chr4.4:30441419-30441438 | MS.gene56524:CDS | 35.0% | |
| CTACGAAAAATGTAGATGCT+GGG | + | chr4.4:30441238-30441257 | MS.gene56524:CDS | 35.0% | |
| GAAAAGAATTGTCTGTGACA+TGG | + | chr4.4:30441781-30441800 | MS.gene56524:CDS | 35.0% | |
| GATAGCATTACAGATGTAGT+GGG | + | chr4.4:30442077-30442096 | MS.gene56524:CDS | 35.0% | |
| GGAATATGTTTCAATGGCAT+TGG | - | chr4.4:30440746-30440765 | None:intergenic | 35.0% | |
| GGTGCAAAGAGTAATGAAAT+GGG | - | chr4.4:30440767-30440786 | None:intergenic | 35.0% | |
| TGAGGATGTTGAGATTGATA+TGG | + | chr4.4:30441506-30441525 | MS.gene56524:CDS | 35.0% | |
| TGATAGCATTACAGATGTAG+TGG | + | chr4.4:30442076-30442095 | MS.gene56524:CDS | 35.0% | |
| TTGAGGAACAAATGAAGAGA+TGG | + | chr4.4:30441928-30441947 | MS.gene56524:CDS | 35.0% | |
| ! | AACAGCTATGCTTGATAATC+AGG | + | chr4.4:30441023-30441042 | MS.gene56524:CDS | 35.0% |
| ! | AAGTTAGCAAGAGAAGTGTA+TGG | + | chr4.4:30442194-30442213 | MS.gene56524:CDS | 35.0% |
| ! | AGTTAGCAAGAGAAGTGTAT+GGG | + | chr4.4:30442195-30442214 | MS.gene56524:CDS | 35.0% |
| ! | CAGTTTCAGCTAATGTTTTG+AGG | + | chr4.4:30441574-30441593 | MS.gene56524:CDS | 35.0% |
| ! | GATACTTGAGAGCTTCATTT+TGG | + | chr4.4:30441973-30441992 | MS.gene56524:CDS | 35.0% |
| ! | GATGAAAAGTTCTGTTGCTT+TGG | - | chr4.4:30440710-30440729 | None:intergenic | 35.0% |
| ! | GGTTAAGTTGTTGGCTATAT+TGG | + | chr4.4:30441527-30441546 | MS.gene56524:CDS | 35.0% |
| ! | GTAAGAGGTGTAAGTTTGAA+GGG | + | chr4.4:30441820-30441839 | MS.gene56524:CDS | 35.0% |
| ! | TAAGAGGTGTAAGTTTGAAG+GGG | + | chr4.4:30441821-30441840 | MS.gene56524:CDS | 35.0% |
| ! | TGTAAGAGGTGTAAGTTTGA+AGG | + | chr4.4:30441819-30441838 | MS.gene56524:CDS | 35.0% |
| !! | GGTTGGTAAATTGTCAATTG+GGG | + | chr4.4:30441410-30441429 | MS.gene56524:CDS | 35.0% |
| !! | TGGTTTGGTGTATAAGTTTG+AGG | + | chr4.4:30441911-30441930 | MS.gene56524:CDS | 35.0% |
| !!! | GCGTAGTTTTGATTTTGCTT+CGG | - | chr4.4:30440872-30440891 | None:intergenic | 35.0% |
| !!! | TTTCTGATTGGGTTTTGAGT+GGG | + | chr4.4:30441130-30441149 | MS.gene56524:CDS | 35.0% |
| AAAATCGGAGATTAGTGGGA+GGG | + | chr4.4:30441206-30441225 | MS.gene56524:CDS | 40.0% | |
| AAATGAAGAGATGGAAGGTG+AGG | + | chr4.4:30441937-30441956 | MS.gene56524:CDS | 40.0% | |
| AAGAATTGTCTGTGACATGG+GGG | + | chr4.4:30441784-30441803 | MS.gene56524:CDS | 40.0% | |
| AATCTCCTTCACTTCTTGCT+TGG | - | chr4.4:30441859-30441878 | None:intergenic | 40.0% | |
| AATGAAGAGATGGAAGGTGA+GGG | + | chr4.4:30441938-30441957 | MS.gene56524:CDS | 40.0% | |
| ATATTCGGAGGCTTATGGTT+CGG | + | chr4.4:30442001-30442020 | MS.gene56524:CDS | 40.0% | |
| ATTGAAAGAGGGATGGATGT+AGG | + | chr4.4:30441888-30441907 | MS.gene56524:CDS | 40.0% | |
| CACAAGACTAGGAATTTGGT+TGG | + | chr4.4:30441393-30441412 | MS.gene56524:CDS | 40.0% | |
| CACCTGATGTTGATCTGTTT+AGG | + | chr4.4:30441454-30441473 | MS.gene56524:CDS | 40.0% | |
| CCAATAAATTCAGCAAGCTC+AGG | - | chr4.4:30441171-30441190 | None:intergenic | 40.0% | |
| CTCTTATTCAAGGGAGAAAG+TGG | - | chr4.4:30441762-30441781 | None:intergenic | 40.0% | |
| GAACGATGGATCTTTCTGAT+TGG | + | chr4.4:30441118-30441137 | MS.gene56524:CDS | 40.0% | |
| GAAGTGAAGGAGATTGAGAT+TGG | + | chr4.4:30441864-30441883 | MS.gene56524:CDS | 40.0% | |
| GAGGAATTGAAGAGAAAAGG+CGG | + | chr4.4:30442131-30442150 | MS.gene56524:CDS | 40.0% | |
| GCTACGAAAAATGTAGATGC+TGG | + | chr4.4:30441237-30441256 | MS.gene56524:CDS | 40.0% | |
| GCTTCAAGAGATTTGAAAGC+TGG | + | chr4.4:30441708-30441727 | MS.gene56524:CDS | 40.0% | |
| GGAACAAATGAAGAGATGGA+AGG | + | chr4.4:30441932-30441951 | MS.gene56524:CDS | 40.0% | |
| GGAACTGTGAAATGCTTGTT+GGG | + | chr4.4:30441052-30441071 | MS.gene56524:CDS | 40.0% | |
| GGATGTTAATTCTCTCACTG+AGG | + | chr4.4:30441548-30441567 | MS.gene56524:CDS | 40.0% | |
| GGATTCATTGCAAGTGTAAG+AGG | + | chr4.4:30441805-30441824 | MS.gene56524:CDS | 40.0% | |
| GGGTGCAAAGAGTAATGAAA+TGG | - | chr4.4:30440768-30440787 | None:intergenic | 40.0% | |
| GTGTCACAAGACTAGGAATT+TGG | + | chr4.4:30441389-30441408 | MS.gene56524:CDS | 40.0% | |
| GTTATCCAAGCAAGAAGTGA+AGG | + | chr4.4:30441851-30441870 | MS.gene56524:CDS | 40.0% | |
| TCAATTGGGGAAAATGAGGA+TGG | + | chr4.4:30441423-30441442 | MS.gene56524:CDS | 40.0% | |
| TGCATGTACTCTTCTTCTTC+TGG | - | chr4.4:30440676-30440695 | None:intergenic | 40.0% | |
| TGGTGAAAAAGCAAGCAATG+AGG | + | chr4.4:30442222-30442241 | MS.gene56524:CDS | 40.0% | |
| TGGTGAAGTGAATTCAAGTG+AGG | + | chr4.4:30441488-30441507 | MS.gene56524:CDS | 40.0% | |
| TTCACTTCACCAACATTCTC+AGG | - | chr4.4:30441480-30441499 | None:intergenic | 40.0% | |
| TTTGCATTTCCCTCTGTAAC+CGG | + | chr4.4:30440845-30440864 | MS.gene56524:CDS | 40.0% | |
| ! | ATGCTTGATAATCAGGCAAG+TGG | + | chr4.4:30441030-30441049 | MS.gene56524:CDS | 40.0% |
| ! | ATTGTTATGGTGTTGGGCTA+TGG | + | chr4.4:30441607-30441626 | MS.gene56524:CDS | 40.0% |
| ! | GAGAGGTGTATGAAAAGATG+GGG | + | chr4.4:30442023-30442042 | MS.gene56524:CDS | 40.0% |
| ! | GATTGGTATTGAAAGAGGGA+TGG | + | chr4.4:30441881-30441900 | MS.gene56524:CDS | 40.0% |
| ! | GGAGAGGTGTATGAAAAGAT+GGG | + | chr4.4:30442022-30442041 | MS.gene56524:CDS | 40.0% |
| ! | TGCTTGATAATCAGGCAAGT+GGG | + | chr4.4:30441031-30441050 | MS.gene56524:CDS | 40.0% |
| !! | AGATGCTGGGTCTTTGATTT+TGG | + | chr4.4:30441251-30441270 | MS.gene56524:CDS | 40.0% |
| !! | ATTTTGGTCGCTATATTCGG+AGG | + | chr4.4:30441989-30442008 | MS.gene56524:CDS | 40.0% |
| !! | CCTGAGCTTGCTGAATTTAT+TGG | + | chr4.4:30441168-30441187 | MS.gene56524:CDS | 40.0% |
| !! | TTTGATGGTGAAGTGGGTTA+GGG | - | chr4.4:30440810-30440829 | None:intergenic | 40.0% |
| !!! | CTTTCTGATTGGGTTTTGAG+TGG | + | chr4.4:30441129-30441148 | MS.gene56524:CDS | 40.0% |
| !!! | GAAGCTTTTGATGGTGAAGT+GGG | - | chr4.4:30440816-30440835 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGATGGTGAAG+TGG | - | chr4.4:30440817-30440836 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTGAAGTGGGTT+AGG | - | chr4.4:30440811-30440830 | None:intergenic | 40.0% |
| AAATCGGAGATTAGTGGGAG+GGG | + | chr4.4:30441207-30441226 | MS.gene56524:CDS | 45.0% | |
| AAGATGGGGAAGGAGAATTC+CGG | + | chr4.4:30442037-30442056 | MS.gene56524:CDS | 45.0% | |
| ATGAAGAGATGGAAGGTGAG+GGG | + | chr4.4:30441939-30441958 | MS.gene56524:CDS | 45.0% | |
| CTGTTTAGGCCTGAGAATGT+TGG | + | chr4.4:30441468-30441487 | MS.gene56524:CDS | 45.0% | |
| GAAAATCGGAGATTAGTGGG+AGG | + | chr4.4:30441205-30441224 | MS.gene56524:CDS | 45.0% | |
| GAATTGAAGAGAAAAGGCGG+TGG | + | chr4.4:30442134-30442153 | MS.gene56524:CDS | 45.0% | |
| GGCCTAAACAGATCAACATC+AGG | - | chr4.4:30441459-30441478 | None:intergenic | 45.0% | |
| GGGAACTGTGAAATGCTTGT+TGG | + | chr4.4:30441051-30441070 | MS.gene56524:CDS | 45.0% | |
| GGGAGGTAAAGATTTGAGTG+AGG | + | chr4.4:30441308-30441327 | MS.gene56524:CDS | 45.0% | |
| GGTGCTTAAGATCTTGATGG+AGG | + | chr4.4:30442112-30442131 | MS.gene56524:CDS | 45.0% | |
| GGTGTATGAAAAGATGGGGA+AGG | + | chr4.4:30442027-30442046 | MS.gene56524:CDS | 45.0% | |
| GTGTGGAAGAGAAAGATGGT+GGG | - | chr4.4:30440788-30440807 | None:intergenic | 45.0% | |
| TAGGGTGTGGAAGAGAAAGA+TGG | - | chr4.4:30440792-30440811 | None:intergenic | 45.0% | |
| TCGCTATATTCGGAGGCTTA+TGG | + | chr4.4:30441996-30442015 | MS.gene56524:CDS | 45.0% | |
| TTGCATTTCCCTCTGTAACC+GGG | + | chr4.4:30440846-30440865 | MS.gene56524:CDS | 45.0% | |
| TTTATCGAGGAGTGGAACGA+TGG | + | chr4.4:30441104-30441123 | MS.gene56524:CDS | 45.0% | |
| ! | AAGAGAAGTGTATGGGAAGG+TGG | + | chr4.4:30442202-30442221 | MS.gene56524:CDS | 45.0% |
| ! | AGCAAGAGAAGTGTATGGGA+AGG | + | chr4.4:30442199-30442218 | MS.gene56524:CDS | 45.0% |
| ! | AGCATTACAGATGTAGTGGG+AGG | + | chr4.4:30442080-30442099 | MS.gene56524:CDS | 45.0% |
| ! | CAGGGTGCTTAAGATCTTGA+TGG | + | chr4.4:30442109-30442128 | MS.gene56524:CDS | 45.0% |
| ! | CGGAGAGGTGTATGAAAAGA+TGG | + | chr4.4:30442021-30442040 | MS.gene56524:CDS | 45.0% |
| ! | TTTGAGTGGGTTTCCTGGTA+AGG | + | chr4.4:30441143-30441162 | MS.gene56524:CDS | 45.0% |
| !! | GTTCTGTTGCTTTGGATCTG+AGG | - | chr4.4:30440702-30440721 | None:intergenic | 45.0% |
| !! | TGGTGGTGGAAATTTGGAGA+TGG | + | chr4.4:30442160-30442179 | MS.gene56524:CDS | 45.0% |
| !!! | ATGGAGAGGAGTATTTTGGG+AGG | + | chr4.4:30441291-30441310 | MS.gene56524:CDS | 45.0% |
| !!! | GCGATGGAGAGGAGTATTTT+GGG | + | chr4.4:30441288-30441307 | MS.gene56524:CDS | 45.0% |
| !!! | GTTTTGATTTTGCTTCGGCC+CGG | - | chr4.4:30440867-30440886 | None:intergenic | 45.0% |
| !!! | TGCGATGGAGAGGAGTATTT+TGG | + | chr4.4:30441287-30441306 | MS.gene56524:CDS | 45.0% |
| AAGGTGAGGGGGAAAGAGAA+GGG | + | chr4.4:30441951-30441970 | MS.gene56524:CDS | 50.0% | |
| ACTCGTGTTGTCCTAATGCG+AGG | + | chr4.4:30441652-30441671 | MS.gene56524:CDS | 50.0% | |
| AGGGATGGATGTAGGTGGTT+TGG | + | chr4.4:30441896-30441915 | MS.gene56524:CDS | 50.0% | |
| GAAAGAGGGATGGATGTAGG+TGG | + | chr4.4:30441891-30441910 | MS.gene56524:CDS | 50.0% | |
| GGTGTGGAAGAGAAAGATGG+TGG | - | chr4.4:30440789-30440808 | None:intergenic | 50.0% | |
| TCAACCACTGCATCCAATGC+CGG | - | chr4.4:30442059-30442078 | None:intergenic | 50.0% | |
| TGAAGAGATGGAAGGTGAGG+GGG | + | chr4.4:30441940-30441959 | MS.gene56524:CDS | 50.0% | |
| ! | AATTCCGGCATTGGATGCAG+TGG | + | chr4.4:30442052-30442071 | MS.gene56524:CDS | 50.0% |
| ! | ATGTAGTGGGAGGTGATCAC+AGG | + | chr4.4:30442090-30442109 | MS.gene56524:CDS | 50.0% |
| ! | TGTAGTGGGAGGTGATCACA+GGG | + | chr4.4:30442091-30442110 | MS.gene56524:CDS | 50.0% |
| !! | TGGCAGTGGTGGTGGAAATT+TGG | + | chr4.4:30442154-30442173 | MS.gene56524:CDS | 50.0% |
| !!! | TGGGTTTTGAGTGGGTTTCC+TGG | + | chr4.4:30441138-30441157 | MS.gene56524:CDS | 50.0% |
| AAGAGAAAAGGCGGTGGCAG+TGG | + | chr4.4:30442140-30442159 | MS.gene56524:CDS | 55.0% | |
| AATGCGAGGCGGTTGCATGT+TGG | + | chr4.4:30441666-30441685 | MS.gene56524:CDS | 55.0% | |
| ACATGCAACCGCCTCGCATT+AGG | - | chr4.4:30441666-30441685 | None:intergenic | 55.0% | |
| ATGCGAGGCGGTTGCATGTT+GGG | + | chr4.4:30441667-30441686 | MS.gene56524:CDS | 55.0% | |
| CGTGTTGTCCTAATGCGAGG+CGG | + | chr4.4:30441655-30441674 | MS.gene56524:CDS | 55.0% | |
| GAAGGTGAGGGGGAAAGAGA+AGG | + | chr4.4:30441950-30441969 | MS.gene56524:CDS | 55.0% | |
| GGGAAGGAGAATTCCGGCAT+TGG | + | chr4.4:30442043-30442062 | MS.gene56524:CDS | 55.0% | |
| GGTTACTAAGGCGGTTGCGA+TGG | + | chr4.4:30441272-30441291 | MS.gene56524:CDS | 55.0% | |
| !! | TGGTGAAGTGGGTTAGGGTG+TGG | - | chr4.4:30440805-30440824 | None:intergenic | 55.0% |
| AGAAAAGGCGGTGGCAGTGG+TGG | + | chr4.4:30442143-30442162 | MS.gene56524:CDS | 60.0% | |
| CTAAGGCGGTTGCGATGGAG+AGG | + | chr4.4:30441277-30441296 | MS.gene56524:CDS | 60.0% | |
| GCAAGCTCAGGAGCCTTACC+AGG | - | chr4.4:30441159-30441178 | None:intergenic | 60.0% | |
| TGCGAGGCGGTTGCATGTTG+GGG | + | chr4.4:30441668-30441687 | MS.gene56524:CDS | 60.0% | |
| TGCTTCGGCCCGGTTACAGA+GGG | - | chr4.4:30440857-30440876 | None:intergenic | 60.0% | |
| TTGCTTCGGCCCGGTTACAG+AGG | - | chr4.4:30440858-30440877 | None:intergenic | 60.0% | |
| ! | CGGAGGCTTATGGTTCGGAG+AGG | + | chr4.4:30442006-30442025 | MS.gene56524:CDS | 60.0% |
| AAAGGCGGTGGCAGTGGTGG+TGG | + | chr4.4:30442146-30442165 | MS.gene56524:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30440658 | 30442277 | 30440658 | ID=MS.gene56524 |
| chr4.4 | mRNA | 30440658 | 30442277 | 30440658 | ID=MS.gene56524.t1;Parent=MS.gene56524 |
| chr4.4 | exon | 30440658 | 30442277 | 30440658 | ID=MS.gene56524.t1.exon1;Parent=MS.gene56524.t1 |
| chr4.4 | CDS | 30440658 | 30442277 | 30440658 | ID=cds.MS.gene56524.t1;Parent=MS.gene56524.t1 |
| Gene Sequence |
| Protein sequence |
