Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56595.t1 | XP_013464449.1 | 96.6 | 207 | 7 | 0 | 24 | 230 | 71 | 277 | 1.10E-104 | 389.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56595.t1 | Q9C8L2 | 65.9 | 205 | 70 | 0 | 25 | 229 | 82 | 286 | 4.9e-72 | 272.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56595.t1 | A0A072V8X6 | 96.6 | 207 | 7 | 0 | 24 | 230 | 71 | 277 | 8.2e-105 | 389.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05087 | MS.gene56595 | 0.825372 | 4.86E-54 | -1.69E-46 |
MS.gene054638 | MS.gene56595 | 0.809941 | 1.48E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56595.t1 | MTR_2g072510 | 96.347 | 219 | 8 | 0 | 12 | 230 | 59 | 277 | 2.43e-151 | 422 |
MS.gene56595.t1 | MTR_3g093980 | 28.643 | 199 | 131 | 6 | 40 | 229 | 31 | 227 | 1.12e-16 | 76.3 |
MS.gene56595.t1 | MTR_1g115840 | 27.094 | 203 | 143 | 3 | 33 | 230 | 15 | 217 | 1.49e-15 | 73.2 |
MS.gene56595.t1 | MTR_3g093980 | 29.651 | 172 | 113 | 5 | 64 | 229 | 6 | 175 | 3.58e-15 | 71.2 |
MS.gene56595.t1 | MTR_3g093980 | 25.926 | 135 | 94 | 2 | 39 | 167 | 10 | 144 | 5.84e-13 | 64.7 |
MS.gene56595.t1 | MTR_1g115850 | 24.257 | 202 | 148 | 3 | 34 | 230 | 16 | 217 | 6.92e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56595.t1 | AT1G53520 | 65.116 | 215 | 74 | 1 | 16 | 229 | 72 | 286 | 2.82e-98 | 288 |
MS.gene56595.t1 | AT5G05270 | 27.368 | 190 | 131 | 5 | 46 | 229 | 20 | 208 | 4.89e-12 | 63.5 |
MS.gene56595.t1 | AT5G05270 | 27.368 | 190 | 131 | 5 | 46 | 229 | 20 | 208 | 4.89e-12 | 63.5 |
Find 43 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTTGATGGTAAAACTTTC+TGG | 0.189488 | 2.1:-26182142 | MS.gene56595:CDS |
TAAATTGTTACATTGGAAAA+TGG | 0.283217 | 2.1:+26182468 | None:intergenic |
AAATAAACTTACAAGCAATT+TGG | 0.311752 | 2.1:+26181977 | None:intergenic |
GGCGTCAAGGTCTATGCTTC+TGG | 0.323231 | 2.1:-26182583 | MS.gene56595:CDS |
TCAGACTCATTAACATTGTT+TGG | 0.328011 | 2.1:-26183212 | MS.gene56595:CDS |
TCAGACATCTTTGAGTTTCC+CGG | 0.335505 | 2.1:-26183240 | MS.gene56595:CDS |
TGAAATTTCACATTTGTTGC+TGG | 0.346422 | 2.1:+26183260 | None:intergenic |
GACGGTCTTGAAAGACTTTA+CGG | 0.362456 | 2.1:+26182045 | None:intergenic |
TTGAGCAACTGAAGCTTTCA+AGG | 0.381196 | 2.1:+26181780 | None:intergenic |
TCATTAACATTGTTTGGAAC+TGG | 0.398099 | 2.1:-26183206 | MS.gene56595:intron |
GCTTTCAAGGAGGGAGATAC+AGG | 0.424288 | 2.1:+26181793 | None:intergenic |
AGGCGATATGGCATCACTTA+AGG | 0.432745 | 2.1:+26182115 | None:intergenic |
CAGGTTTCTGTCTCGTCCGA+AGG | 0.435474 | 2.1:-26181895 | MS.gene56595:CDS |
TATTTATGTGGAAATATGTA+TGG | 0.440147 | 2.1:-26186308 | None:intergenic |
TCATCTTCATCTTCATCTGC+TGG | 0.442683 | 2.1:-26184733 | MS.gene56595:intron |
GCAGTTTCATCTGCAGTTGT+TGG | 0.451903 | 2.1:+26182080 | None:intergenic |
ATTGTAGCATCCGCGGTAGA+TGG | 0.462850 | 2.1:+26181868 | None:intergenic |
TTGAAAGACTTTACGGAAAG+TGG | 0.469351 | 2.1:+26182052 | None:intergenic |
GTTCTTGTAAGAGATGTTGA+TGG | 0.475074 | 2.1:-26182155 | MS.gene56595:CDS |
TCAACTCACTTACGATAGAC+TGG | 0.484791 | 2.1:+26182548 | None:intergenic |
CAATCGAAAGATGTTATTCA+AGG | 0.508233 | 2.1:-26182511 | MS.gene56595:CDS |
CGCGGTAGATGGAATCCCTT+CGG | 0.509077 | 2.1:+26181879 | None:intergenic |
ATGTGGAAATATGTATGGAC+AGG | 0.511258 | 2.1:-26186303 | None:intergenic |
CAGACATCTTTGAGTTTCCC+GGG | 0.519909 | 2.1:-26183239 | MS.gene56595:CDS |
TGTTGATGGTAAAACTTTCT+GGG | 0.525779 | 2.1:-26182141 | MS.gene56595:CDS |
AAACTTACAAGCAATTTGGT+AGG | 0.533294 | 2.1:+26181981 | None:intergenic |
CAATTTGCAATAATTTCTCA+AGG | 0.537797 | 2.1:+26182177 | None:intergenic |
GCAACTGAAGCTTTCAAGGA+GGG | 0.547069 | 2.1:+26181784 | None:intergenic |
ATTTGCAATAATTTCTCAAG+GGG | 0.559906 | 2.1:+26182179 | None:intergenic |
AGGTTTCTGTCTCGTCCGAA+GGG | 0.561525 | 2.1:-26181894 | MS.gene56595:CDS |
GTTAATGAGTCTGAGCAACC+CGG | 0.566583 | 2.1:+26183221 | None:intergenic |
GTGAGTTGAATGCTTGGAAA+GGG | 0.568634 | 2.1:-26182534 | MS.gene56595:CDS |
AAATCACTCACAGTGAACAT+TGG | 0.576821 | 2.1:+26186271 | None:intergenic |
TCGTAAGTGAGTTGAATGCT+TGG | 0.577985 | 2.1:-26182540 | MS.gene56595:CDS |
TTGGAAAATGGTCTTGAACA+AGG | 0.586433 | 2.1:+26182480 | None:intergenic |
AATCGAAAGATGTTATTCAA+GGG | 0.596696 | 2.1:-26182510 | MS.gene56595:CDS |
AGTGAGTTGAATGCTTGGAA+AGG | 0.607454 | 2.1:-26182535 | MS.gene56595:CDS |
AATTTGCAATAATTTCTCAA+GGG | 0.620787 | 2.1:+26182178 | None:intergenic |
GGCAAATGCTGAATACATTG+AGG | 0.643782 | 2.1:-26183285 | MS.gene56595:CDS |
AGATTCAATTGTAGCATCCG+CGG | 0.657060 | 2.1:+26181861 | None:intergenic |
AGCAACTGAAGCTTTCAAGG+AGG | 0.661635 | 2.1:+26181783 | None:intergenic |
TTAATGAGTCTGAGCAACCC+GGG | 0.664480 | 2.1:+26183222 | None:intergenic |
CGAAGGGATTCCATCTACCG+CGG | 0.709973 | 2.1:-26181878 | MS.gene56595:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTCAAATGAAATTAA+TGG | + | chr2.1:26185611-26185630 | None:intergenic | 10.0% |
!! | AAAATAAGAAATTTCTTCAA+TGG | - | chr2.1:26184076-26184095 | MS.gene56595:intron | 15.0% |
!! | AAATATTTAATTCTACAAGA+TGG | + | chr2.1:26185203-26185222 | None:intergenic | 15.0% |
!! | AATAAAATATTGAGATTGAA+GGG | + | chr2.1:26183091-26183110 | None:intergenic | 15.0% |
!! | GAATGCATAAAATAATATAT+GGG | - | chr2.1:26183734-26183753 | MS.gene56595:intron | 15.0% |
!! | TAATAAAATATTGAGATTGA+AGG | + | chr2.1:26183092-26183111 | None:intergenic | 15.0% |
!! | TGAAAACATTATGTTTATAA+TGG | - | chr2.1:26185280-26185299 | MS.gene56595:intron | 15.0% |
!! | TGAATGCATAAAATAATATA+TGG | - | chr2.1:26183733-26183752 | MS.gene56595:intron | 15.0% |
!!! | AAAAAACTGAGTTTTTTTTA+TGG | + | chr2.1:26182934-26182953 | None:intergenic | 15.0% |
!!! | AAATTAAAGTTCCTTTTTTA+AGG | + | chr2.1:26186031-26186050 | None:intergenic | 15.0% |
!!! | AATTAAAGTTCCTTTTTTAA+GGG | + | chr2.1:26186030-26186049 | None:intergenic | 15.0% |
!!! | AATTTTCATGTCAATTAATA+CGG | - | chr2.1:26185082-26185101 | MS.gene56595:intron | 15.0% |
!!! | TAGAATTGATTTTTTTAACT+AGG | + | chr2.1:26182865-26182884 | None:intergenic | 15.0% |
!!! | TTGCATTTTTTTTACTTTTT+TGG | - | chr2.1:26183824-26183843 | MS.gene56595:intron | 15.0% |
!!! | TTTCATTTTTTTTTTCTAAG+TGG | + | chr2.1:26182980-26182999 | None:intergenic | 15.0% |
!! | AAAAGAAAAATACTCACATA+AGG | + | chr2.1:26182734-26182753 | None:intergenic | 20.0% |
!! | AAAGAAAAATGAAAGATTGT+AGG | + | chr2.1:26182821-26182840 | None:intergenic | 20.0% |
!! | AAATAAACTTACAAGCAATT+TGG | + | chr2.1:26186075-26186094 | None:intergenic | 20.0% |
!! | AATTTGCAATAATTTCTCAA+GGG | + | chr2.1:26185874-26185893 | None:intergenic | 20.0% |
!! | ATGTTTATAATGGTATTGTA+TGG | - | chr2.1:26185290-26185309 | MS.gene56595:intron | 20.0% |
!! | CAAAATTTAGCAAACAAATA+AGG | - | chr2.1:26182072-26182091 | MS.gene56595:CDS | 20.0% |
!! | CAAGTTAATTAATATTGATG+AGG | - | chr2.1:26182237-26182256 | MS.gene56595:intron | 20.0% |
!! | TAAATTGTTACATTGGAAAA+TGG | + | chr2.1:26185584-26185603 | None:intergenic | 20.0% |
!! | TACAAAAGAAAAAAAGAATG+AGG | - | chr2.1:26182208-26182227 | MS.gene56595:intron | 20.0% |
!! | TATAGACAAAAAGATTAAAG+CGG | - | chr2.1:26183021-26183040 | MS.gene56595:intron | 20.0% |
!! | TGAAGGGTTAAATATATTTA+TGG | + | chr2.1:26183975-26183994 | None:intergenic | 20.0% |
!! | TGGATATTAAATTGTTACAT+TGG | + | chr2.1:26185591-26185610 | None:intergenic | 20.0% |
!!! | AAAAGATACAATTTTGTCTA+CGG | - | chr2.1:26181983-26182002 | MS.gene56595:intron | 20.0% |
!!! | AAACTAAATTTTGTGATTTC+AGG | - | chr2.1:26186135-26186154 | MS.gene56595:intron | 20.0% |
!!! | ATTAAAGTTCCTTTTTTAAG+GGG | + | chr2.1:26186029-26186048 | None:intergenic | 20.0% |
!!! | GAAAAAGTTTTTGCTATTAT+TGG | - | chr2.1:26185445-26185464 | MS.gene56595:intron | 20.0% |
!!! | GAACTTTAATTTTTTTGACT+TGG | - | chr2.1:26186039-26186058 | MS.gene56595:intron | 20.0% |
!!! | TAAACTTTTGCAGATTAAAT+TGG | - | chr2.1:26183554-26183573 | MS.gene56595:intron | 20.0% |
! | AAAGAGTGAACATAGTTTAA+TGG | + | chr2.1:26183214-26183233 | None:intergenic | 25.0% |
! | AACTATAACTACTTTCACTT+CGG | + | chr2.1:26183052-26183071 | None:intergenic | 25.0% |
! | AATATATCTGAACAAGGTTA+AGG | - | chr2.1:26183798-26183817 | MS.gene56595:intron | 25.0% |
! | AATCGAAAGATGTTATTCAA+GGG | - | chr2.1:26185539-26185558 | MS.gene56595:intron | 25.0% |
! | ACAAAAAATTCAATCAAGTG+AGG | - | chr2.1:26182303-26182322 | MS.gene56595:intron | 25.0% |
! | ACAAATATTCCAAAATTGTC+AGG | + | chr2.1:26183909-26183928 | None:intergenic | 25.0% |
! | ACAAGTAATATATCTGAACA+AGG | - | chr2.1:26183792-26183811 | MS.gene56595:intron | 25.0% |
! | AGCAAATAGTTGTAAAGATT+GGG | - | chr2.1:26184045-26184064 | MS.gene56595:intron | 25.0% |
! | ATTAGTTGGATTTGCAATAA+TGG | - | chr2.1:26183769-26183788 | MS.gene56595:intron | 25.0% |
! | ATTATTGCAAATCCAACTAA+TGG | + | chr2.1:26183770-26183789 | None:intergenic | 25.0% |
! | ATTTGCAATAATTTCTCAAG+GGG | + | chr2.1:26185873-26185892 | None:intergenic | 25.0% |
! | CAATTTGCAATAATTTCTCA+AGG | + | chr2.1:26185875-26185894 | None:intergenic | 25.0% |
! | CATCATATCAACCAATTTAA+AGG | + | chr2.1:26184995-26185014 | None:intergenic | 25.0% |
! | CCAAATTTCTAATCTTATGA+GGG | - | chr2.1:26181929-26181948 | MS.gene56595:intron | 25.0% |
! | CCTCATAAGATTAGAAATTT+GGG | + | chr2.1:26181931-26181950 | None:intergenic | 25.0% |
! | CTACTAGACAGAAATAATTA+CGG | + | chr2.1:26185337-26185356 | None:intergenic | 25.0% |
! | CTTAAAACAAGTTCACAATA+AGG | + | chr2.1:26182435-26182454 | None:intergenic | 25.0% |
! | GATACCTAATTTAGTACAAA+GGG | + | chr2.1:26185731-26185750 | None:intergenic | 25.0% |
! | TAACACAATTAGAAAAAGTG+AGG | - | chr2.1:26184145-26184164 | MS.gene56595:intron | 25.0% |
! | TACTAGACAGAAATAATTAC+GGG | + | chr2.1:26185336-26185355 | None:intergenic | 25.0% |
! | TAGCAAATAGTTGTAAAGAT+TGG | - | chr2.1:26184044-26184063 | MS.gene56595:intron | 25.0% |
! | TATAATGTAGCAATTTCATG+CGG | - | chr2.1:26184921-26184940 | MS.gene56595:intron | 25.0% |
! | TATATGATTGAATAATGCAG+CGG | - | chr2.1:26184743-26184762 | MS.gene56595:intron | 25.0% |
! | TCTTGTTCGTAATCTTAATT+AGG | - | chr2.1:26181804-26181823 | MS.gene56595:CDS | 25.0% |
! | TGAAACCAAAAAACAAATAG+AGG | - | chr2.1:26182614-26182633 | MS.gene56595:CDS | 25.0% |
! | TGATACCTAATTTAGTACAA+AGG | + | chr2.1:26185732-26185751 | None:intergenic | 25.0% |
! | TTAGTTGACATAGTATTACA+TGG | - | chr2.1:26184866-26184885 | MS.gene56595:intron | 25.0% |
! | TTGTACTAAATTAGGTATCA+CGG | - | chr2.1:26185732-26185751 | MS.gene56595:intron | 25.0% |
!! | AAATTTTGCCATGAACTAAA+GGG | + | chr2.1:26182060-26182079 | None:intergenic | 25.0% |
!! | AGACAAAATTGTATCTTTTG+CGG | + | chr2.1:26181982-26182001 | None:intergenic | 25.0% |
!! | ATAGATAAAGATTCTAGAAG+TGG | - | chr2.1:26182265-26182284 | MS.gene56595:intron | 25.0% |
!! | ATTCACAACATGATTTTGAA+AGG | + | chr2.1:26185065-26185084 | None:intergenic | 25.0% |
!! | CACTTTCTCTTTTTCTTTTT+TGG | + | chr2.1:26183655-26183674 | None:intergenic | 25.0% |
!! | TAAATTTTGCCATGAACTAA+AGG | + | chr2.1:26182061-26182080 | None:intergenic | 25.0% |
!! | TGATAATAAGCCTTATCTTT+CGG | - | chr2.1:26185115-26185134 | MS.gene56595:intron | 25.0% |
!! | TTGATAATAACACCTATTTC+AGG | - | chr2.1:26185415-26185434 | MS.gene56595:intron | 25.0% |
!! | TTTACTAGTTGATGCAATTT+CGG | + | chr2.1:26182017-26182036 | None:intergenic | 25.0% |
!!! | AAAATATTCGCCTTTTTTGA+AGG | - | chr2.1:26183629-26183648 | MS.gene56595:intron | 25.0% |
!!! | CTTATTGTGAACTTGTTTTA+AGG | - | chr2.1:26182433-26182452 | MS.gene56595:intron | 25.0% |
!!! | TTGATCCTCTATTTGTTTTT+TGG | + | chr2.1:26182622-26182641 | None:intergenic | 25.0% |
!!! | TTGTTTTTTGGTTTCATTCT+TGG | + | chr2.1:26182610-26182629 | None:intergenic | 25.0% |
AAACTTACAAGCAATTTGGT+AGG | + | chr2.1:26186071-26186090 | None:intergenic | 30.0% | |
AATAAAGATGTTAGGCATGA+AGG | - | chr2.1:26182462-26182481 | MS.gene56595:intron | 30.0% | |
AATCAGTGTTGTCAAATAAC+CGG | + | chr2.1:26185806-26185825 | None:intergenic | 30.0% | |
ACAACCCTTTGTACTAAATT+AGG | - | chr2.1:26185724-26185743 | MS.gene56595:intron | 30.0% | |
AGTGAAAAGTTTGAAGATTC+TGG | - | chr2.1:26183671-26183690 | MS.gene56595:intron | 30.0% | |
ATGTACAAAAACTAGTTCCT+TGG | + | chr2.1:26182556-26182575 | None:intergenic | 30.0% | |
ATTAACTCAGCTAGTAGTAA+TGG | + | chr2.1:26182499-26182518 | None:intergenic | 30.0% | |
CAATCGAAAGATGTTATTCA+AGG | - | chr2.1:26185538-26185557 | MS.gene56595:intron | 30.0% | |
CCCAAATTTCTAATCTTATG+AGG | - | chr2.1:26181928-26181947 | MS.gene56595:intron | 30.0% | |
CCCTCATAAGATTAGAAATT+TGG | + | chr2.1:26181932-26181951 | None:intergenic | 30.0% | |
GAAAGATAAGGCTTATTATC+AGG | + | chr2.1:26185116-26185135 | None:intergenic | 30.0% | |
GGCATGTAAATAAAGATGTT+AGG | - | chr2.1:26182454-26182473 | MS.gene56595:intron | 30.0% | |
GTAGAAGATGAAAAACATAG+TGG | + | chr2.1:26183157-26183176 | None:intergenic | 30.0% | |
TATCAACCAATTTAAAGGCA+AGG | + | chr2.1:26184990-26185009 | None:intergenic | 30.0% | |
TCAGACTCATTAACATTGTT+TGG | - | chr2.1:26184837-26184856 | MS.gene56595:intron | 30.0% | |
TGACTGTTAGGAATGAAATT+TGG | - | chr2.1:26184181-26184200 | MS.gene56595:intron | 30.0% | |
TGGGTCTGTAATAAATTAGT+AGG | - | chr2.1:26182402-26182421 | MS.gene56595:intron | 30.0% | |
TGTTGGTCAAAAGACATAAT+AGG | - | chr2.1:26182125-26182144 | MS.gene56595:CDS | 30.0% | |
TTAACTCAGCTAGTAGTAAT+GGG | + | chr2.1:26182498-26182517 | None:intergenic | 30.0% | |
TTACGGGCAAAAAAATCTAA+AGG | + | chr2.1:26185320-26185339 | None:intergenic | 30.0% | |
! | ACTTTTGCAGATTAAATTGG+AGG | - | chr2.1:26183557-26183576 | MS.gene56595:intron | 30.0% |
! | CTTTTGCAGATTAAATTGGA+GGG | - | chr2.1:26183558-26183577 | MS.gene56595:intron | 30.0% |
! | GAAGATATTCCATCAGATTT+TGG | - | chr2.1:26182094-26182113 | MS.gene56595:CDS | 30.0% |
! | GCTCTTTTTGATGTATTTCT+TGG | - | chr2.1:26186226-26186245 | MS.gene56595:intron | 30.0% |
! | TCATTAACATTGTTTGGAAC+TGG | - | chr2.1:26184843-26184862 | MS.gene56595:intron | 30.0% |
! | TGAAATTTCACATTTGTTGC+TGG | + | chr2.1:26184792-26184811 | None:intergenic | 30.0% |
! | TGATGATGAACTTACTTTCA+TGG | - | chr2.1:26185010-26185029 | MS.gene56595:intron | 30.0% |
! | TTTTCTCTGTATCCTGAAAT+AGG | + | chr2.1:26185430-26185449 | None:intergenic | 30.0% |
!! | ACAATGAGGTAGTATTTTGA+AGG | + | chr2.1:26183992-26184011 | None:intergenic | 30.0% |
!! | ATGTTGATGGTAAAACTTTC+TGG | - | chr2.1:26185907-26185926 | MS.gene56595:intron | 30.0% |
!! | CAATGAGGTAGTATTTTGAA+GGG | + | chr2.1:26183991-26184010 | None:intergenic | 30.0% |
!! | TGTTGATGGTAAAACTTTCT+GGG | - | chr2.1:26185908-26185927 | MS.gene56595:intron | 30.0% |
!! | TTGTTTTGCTCCTGAAATTT+CGG | + | chr2.1:26182178-26182197 | None:intergenic | 30.0% |
!!! | ATGTTGTGTGTTTTAGTTGT+GGG | - | chr2.1:26181836-26181855 | MS.gene56595:CDS | 30.0% |
!!! | GATTGAATTTTTTGTGCAAC+AGG | + | chr2.1:26182298-26182317 | None:intergenic | 30.0% |
!!! | TCTTTTTTGGCCTTCAAAAA+AGG | + | chr2.1:26183642-26183661 | None:intergenic | 30.0% |
AAAAACTAGTTCCTTGGTGA+TGG | + | chr2.1:26182550-26182569 | None:intergenic | 35.0% | |
AAATCACTCACAGTGAACAT+TGG | + | chr2.1:26181781-26181800 | None:intergenic | 35.0% | |
ACAACTACATGTTGGAGATT+TGG | - | chr2.1:26182584-26182603 | MS.gene56595:CDS | 35.0% | |
AGGCAAAGTGATTATATCTG+AGG | - | chr2.1:26185145-26185164 | MS.gene56595:intron | 35.0% | |
ATATGCGTATTGTTGAAGCT+TGG | - | chr2.1:26182661-26182680 | MS.gene56595:intron | 35.0% | |
ATATTCCAAAATTGTCAGGC+CGG | + | chr2.1:26183905-26183924 | None:intergenic | 35.0% | |
ATGTTCACTGTGAGTGATTT+AGG | - | chr2.1:26181781-26181800 | MS.gene56595:CDS | 35.0% | |
ATGTTTAGATTTCCATCACG+TGG | - | chr2.1:26184351-26184370 | MS.gene56595:intron | 35.0% | |
ATTAAATTGGAGGGCTAACA+TGG | - | chr2.1:26183567-26183586 | MS.gene56595:intron | 35.0% | |
GAATATTTGTCAGTTGAGCT+AGG | - | chr2.1:26183919-26183938 | MS.gene56595:intron | 35.0% | |
GCAAGATAGCAAAAGTGAAA+AGG | + | chr2.1:26186103-26186122 | None:intergenic | 35.0% | |
GCTTCAACAATACGCATATT+AGG | + | chr2.1:26182660-26182679 | None:intergenic | 35.0% | |
GGTTTCTTCACCTAATGAAA+TGG | - | chr2.1:26181950-26181969 | MS.gene56595:intron | 35.0% | |
GTTCTTGTAAGAGATGTTGA+TGG | - | chr2.1:26185894-26185913 | MS.gene56595:intron | 35.0% | |
TCATGACCTTGCCTTTAAAT+TGG | - | chr2.1:26184981-26185000 | MS.gene56595:intron | 35.0% | |
TCTGTCTAGTAGAATGTAGT+AGG | - | chr2.1:26185345-26185364 | MS.gene56595:intron | 35.0% | |
TGAGTCTTAACTTTCGAACT+GGG | - | chr2.1:26182383-26182402 | MS.gene56595:intron | 35.0% | |
TTAGAAAAAGTGAGGTAGTG+AGG | - | chr2.1:26184153-26184172 | MS.gene56595:intron | 35.0% | |
TTGAAAGACTTTACGGAAAG+TGG | + | chr2.1:26186000-26186019 | None:intergenic | 35.0% | |
! | AAAATTGTATCTTTTGCGGC+AGG | + | chr2.1:26181978-26181997 | None:intergenic | 35.0% |
! | ATCCTTTTTGACAGACAAAG+AGG | - | chr2.1:26184286-26184305 | MS.gene56595:intron | 35.0% |
! | ATGTCTTTTGACCAACATCT+AGG | + | chr2.1:26182122-26182141 | None:intergenic | 35.0% |
! | GATAAAGATTCTAGAAGTGG+TGG | - | chr2.1:26182268-26182287 | MS.gene56595:intron | 35.0% |
! | TATGCTGATATCACTGATTG+TGG | - | chr2.1:26184945-26184964 | MS.gene56595:intron | 35.0% |
! | TCCTTTTTGACAGACAAAGA+GGG | - | chr2.1:26184287-26184306 | MS.gene56595:intron | 35.0% |
! | TGTCTTTTGACCAACATCTA+GGG | + | chr2.1:26182121-26182140 | None:intergenic | 35.0% |
! | TTGGAAAATGGTCTTGAACA+AGG | + | chr2.1:26185572-26185591 | None:intergenic | 35.0% |
! | TTTTGCAATTCTAGGCGATA+TGG | + | chr2.1:26185949-26185968 | None:intergenic | 35.0% |
!! | AGATGGACTATCAAAGAATG+TGG | + | chr2.1:26185186-26185205 | None:intergenic | 35.0% |
!! | TTTTGCTATCTTGCGAAAAC+TGG | - | chr2.1:26186109-26186128 | MS.gene56595:intron | 35.0% |
!!! | AAGTTCCTTTTTTAAGGGGA+CGG | + | chr2.1:26186025-26186044 | None:intergenic | 35.0% |
!!! | CATGTTGTGTGTTTTAGTTG+TGG | - | chr2.1:26181835-26181854 | MS.gene56595:CDS | 35.0% |
!!! | GTTGTTGGTTTTGCAATTCT+AGG | + | chr2.1:26185957-26185976 | None:intergenic | 35.0% |
!!! | TTTTGCTATTATTGGCGTCA+AGG | - | chr2.1:26185453-26185472 | MS.gene56595:intron | 35.0% |
AAGCAGCTTGTGGAAAGAAA+TGG | + | chr2.1:26183297-26183316 | None:intergenic | 40.0% | |
AGATTCAATTGTAGCATCCG+CGG | + | chr2.1:26186191-26186210 | None:intergenic | 40.0% | |
AGCAGCTTGTGGAAAGAAAT+GGG | + | chr2.1:26183296-26183315 | None:intergenic | 40.0% | |
AGTGAGGATATCTGACTGTT+AGG | - | chr2.1:26184169-26184188 | MS.gene56595:intron | 40.0% | |
ATCTAGGGACCAAAATCTGA+TGG | + | chr2.1:26182106-26182125 | None:intergenic | 40.0% | |
CAGAATATGTCAGCACAATG+AGG | + | chr2.1:26184006-26184025 | None:intergenic | 40.0% | |
CCTGTAGTTACCGAAAGATA+AGG | + | chr2.1:26185128-26185147 | None:intergenic | 40.0% | |
CCTTATCTTTCGGTAACTAC+AGG | - | chr2.1:26185125-26185144 | MS.gene56595:intron | 40.0% | |
CGAATCCCAATCATGATATC+CGG | - | chr2.1:26183883-26183902 | MS.gene56595:intron | 40.0% | |
CTTGTCTTACACTCTTCTAC+CGG | - | chr2.1:26184488-26184507 | MS.gene56595:intron | 40.0% | |
GACATTAAACAGCTTGTGTC+TGG | + | chr2.1:26181889-26181908 | None:intergenic | 40.0% | |
GACGGTCTTGAAAGACTTTA+CGG | + | chr2.1:26186007-26186026 | None:intergenic | 40.0% | |
GCTCTAGTACAACTACATGT+TGG | - | chr2.1:26182576-26182595 | MS.gene56595:CDS | 40.0% | |
GGCAAATGCTGAATACATTG+AGG | - | chr2.1:26184764-26184783 | MS.gene56595:intron | 40.0% | |
GGGTCTTCATCGTAGAATTT+AGG | + | chr2.1:26182040-26182059 | None:intergenic | 40.0% | |
GGTGAATTGTCTCCATTAGT+TGG | - | chr2.1:26183755-26183774 | MS.gene56595:intron | 40.0% | |
GTGAGTCTTAACTTTCGAAC+TGG | - | chr2.1:26182382-26182401 | MS.gene56595:intron | 40.0% | |
GTTCAACCAAGACCTTTGTA+CGG | + | chr2.1:26184544-26184563 | None:intergenic | 40.0% | |
TACAAAGGGTTGTGACTTAG+TGG | + | chr2.1:26185717-26185736 | None:intergenic | 40.0% | |
TATAGCAACGCTATAGCGTA+GGG | + | chr2.1:26185782-26185801 | None:intergenic | 40.0% | |
TCAACTCACTTACGATAGAC+TGG | + | chr2.1:26185504-26185523 | None:intergenic | 40.0% | |
TCATCTTCATCTTCATCTGC+TGG | - | chr2.1:26183316-26183335 | MS.gene56595:intron | 40.0% | |
TCGTATTCTAAGCTGTGGAT+AGG | - | chr2.1:26184620-26184639 | MS.gene56595:intron | 40.0% | |
TGCATCTCAACCGAAATTTC+AGG | - | chr2.1:26182165-26182184 | MS.gene56595:CDS | 40.0% | |
TTATAGCAACGCTATAGCGT+AGG | + | chr2.1:26185783-26185802 | None:intergenic | 40.0% | |
TTGAGAGAGAAATGCAGAGA+GGG | + | chr2.1:26183253-26183272 | None:intergenic | 40.0% | |
TTGAGCAACTGAAGCTTTCA+AGG | + | chr2.1:26186272-26186291 | None:intergenic | 40.0% | |
TTGTCTCGTATTCTAAGCTG+TGG | - | chr2.1:26184615-26184634 | MS.gene56595:intron | 40.0% | |
TTGTGGGAAATATGACCACA+AGG | - | chr2.1:26181852-26181871 | MS.gene56595:CDS | 40.0% | |
! | AGTGAGTTGAATGCTTGGAA+AGG | - | chr2.1:26185514-26185533 | MS.gene56595:intron | 40.0% |
! | GATGAAGACCCTTTAGTTCA+TGG | - | chr2.1:26182049-26182068 | MS.gene56595:CDS | 40.0% |
! | GTGAGTTGAATGCTTGGAAA+GGG | - | chr2.1:26185515-26185534 | MS.gene56595:intron | 40.0% |
! | TCAGACATCTTTGAGTTTCC+CGG | - | chr2.1:26184809-26184828 | MS.gene56595:intron | 40.0% |
! | TCGTAAGTGAGTTGAATGCT+TGG | - | chr2.1:26185509-26185528 | MS.gene56595:intron | 40.0% |
!! | AGATTTTGGTCCCTAGATGT+TGG | - | chr2.1:26182108-26182127 | MS.gene56595:CDS | 40.0% |
AGCAACTGAAGCTTTCAAGG+AGG | + | chr2.1:26186269-26186288 | None:intergenic | 45.0% | |
AGGCGATATGGCATCACTTA+AGG | + | chr2.1:26185937-26185956 | None:intergenic | 45.0% | |
ATAGCAACGCTATAGCGTAG+GGG | + | chr2.1:26185781-26185800 | None:intergenic | 45.0% | |
CAACACGAAGTGTACGAGTT+GGG | - | chr2.1:26184391-26184410 | MS.gene56595:intron | 45.0% | |
CAAGACCGTCCCCTTAAAAA+AGG | - | chr2.1:26186017-26186036 | MS.gene56595:intron | 45.0% | |
CAGCTTGTGGAAAGAAATGG+GGG | + | chr2.1:26183294-26183313 | None:intergenic | 45.0% | |
CCAAAACCGTACAAAGGTCT+TGG | - | chr2.1:26184535-26184554 | MS.gene56595:intron | 45.0% | |
CGCTATAGCGTTGCTATAAC+CGG | - | chr2.1:26185784-26185803 | MS.gene56595:intron | 45.0% | |
CTGGACAAATTCCAACCTTG+TGG | + | chr2.1:26181870-26181889 | None:intergenic | 45.0% | |
CTGGTAGGACAGGAAAAACA+CGG | - | chr2.1:26184438-26184457 | MS.gene56595:intron | 45.0% | |
CTTCAGTCGCTTGAAAGTTC+TGG | - | chr2.1:26184419-26184438 | MS.gene56595:intron | 45.0% | |
GAGGATCCAAAACCGTACAA+AGG | - | chr2.1:26184529-26184548 | MS.gene56595:intron | 45.0% | |
GAGGGCTAACATGGTTAGAT+TGG | - | chr2.1:26183576-26183595 | MS.gene56595:intron | 45.0% | |
GATCGCGGAAAATAGCAGTT+TGG | - | chr2.1:26185662-26185681 | MS.gene56595:intron | 45.0% | |
GATGAAGATGAAGCAGCTTG+TGG | + | chr2.1:26183307-26183326 | None:intergenic | 45.0% | |
GATGCTGTCATATGAGACTC+AGG | + | chr2.1:26184269-26184288 | None:intergenic | 45.0% | |
GCAACTGAAGCTTTCAAGGA+GGG | + | chr2.1:26186268-26186287 | None:intergenic | 45.0% | |
GCAGCTTGTGGAAAGAAATG+GGG | + | chr2.1:26183295-26183314 | None:intergenic | 45.0% | |
GCAGTTTCATCTGCAGTTGT+TGG | + | chr2.1:26185972-26185991 | None:intergenic | 45.0% | |
GCCCTCTTTGTCTGTCAAAA+AGG | + | chr2.1:26184291-26184310 | None:intergenic | 45.0% | |
GGGAAATATGACCACAAGGT+TGG | - | chr2.1:26181856-26181875 | MS.gene56595:CDS | 45.0% | |
GTGTTGTCAATAGCTGATCG+CGG | - | chr2.1:26185647-26185666 | MS.gene56595:intron | 45.0% | |
GTTAATGAGTCTGAGCAACC+CGG | + | chr2.1:26184831-26184850 | None:intergenic | 45.0% | |
GTTGAGAGAGAAATGCAGAG+AGG | + | chr2.1:26183254-26183273 | None:intergenic | 45.0% | |
TATCCACATCGAAGCTTGGT+GGG | - | chr2.1:26182326-26182345 | MS.gene56595:intron | 45.0% | |
TCAACACGAAGTGTACGAGT+TGG | - | chr2.1:26184390-26184409 | MS.gene56595:intron | 45.0% | |
TCAGGCCGGATATCATGATT+GGG | + | chr2.1:26183891-26183910 | None:intergenic | 45.0% | |
TGAGAGAGAAATGCAGAGAG+GGG | + | chr2.1:26183252-26183271 | None:intergenic | 45.0% | |
TTAATGAGTCTGAGCAACCC+GGG | + | chr2.1:26184830-26184849 | None:intergenic | 45.0% | |
! | AGTCGCTTGAAAGTTCTGGT+AGG | - | chr2.1:26184423-26184442 | MS.gene56595:intron | 45.0% |
! | CAGACATCTTTGAGTTTCCC+GGG | - | chr2.1:26184810-26184829 | MS.gene56595:intron | 45.0% |
! | CCAAGACCTTTGTACGGTTT+TGG | + | chr2.1:26184538-26184557 | None:intergenic | 45.0% |
! | CGGTAGAAGAGTGTAAGACA+AGG | + | chr2.1:26184490-26184509 | None:intergenic | 45.0% |
! | CTTGAAAGTTCTGGTAGGAC+AGG | - | chr2.1:26184428-26184447 | MS.gene56595:intron | 45.0% |
! | GAGGGCGTAACTGCTAAATT+AGG | - | chr2.1:26184305-26184324 | MS.gene56595:intron | 45.0% |
! | GATATCCGGCCTGACAATTT+TGG | - | chr2.1:26183897-26183916 | MS.gene56595:intron | 45.0% |
!! | ACTAGTTCCTTGGTGATGGT+TGG | + | chr2.1:26182546-26182565 | None:intergenic | 45.0% |
!! | GAAATGGGGGTGTGTTTTAG+AGG | + | chr2.1:26183281-26183300 | None:intergenic | 45.0% |
!! | TCCTTGGTGATGGTTGGTAA+TGG | + | chr2.1:26182540-26182559 | None:intergenic | 45.0% |
!! | AAAAATCAAATAAAAATAAA+TGG | + | chr2.1:26183361-26183380 | None:intergenic | 5.0% |
!!! | TAATTGATTTTAATTAAAAA+AGG | + | chr2.1:26182909-26182928 | None:intergenic | 5.0% |
AGAGAGAAATGCAGAGAGGG+GGG | + | chr2.1:26183250-26183269 | None:intergenic | 50.0% | |
AGATTTCCATCACGTGGCAG+TGG | - | chr2.1:26184357-26184376 | MS.gene56595:intron | 50.0% | |
AGGTTTCTGTCTCGTCCGAA+GGG | - | chr2.1:26186155-26186174 | MS.gene56595:intron | 50.0% | |
ATTGTAGCATCCGCGGTAGA+TGG | + | chr2.1:26186184-26186203 | None:intergenic | 50.0% | |
CATGATTGGGATTCGAACCC+CGG | + | chr2.1:26183878-26183897 | None:intergenic | 50.0% | |
GAGAGAGAAATGCAGAGAGG+GGG | + | chr2.1:26183251-26183270 | None:intergenic | 50.0% | |
GCCATTACCAACCATCACCA+AGG | - | chr2.1:26182536-26182555 | MS.gene56595:CDS | 50.0% | |
GCTATAGCGCTGTAGCATAG+CGG | + | chr2.1:26185695-26185714 | None:intergenic | 50.0% | |
GCTTTCAAGGAGGGAGATAC+AGG | + | chr2.1:26186259-26186278 | None:intergenic | 50.0% | |
GTATCCACATCGAAGCTTGG+TGG | - | chr2.1:26182325-26182344 | MS.gene56595:intron | 50.0% | |
GTCAGGCCGGATATCATGAT+TGG | + | chr2.1:26183892-26183911 | None:intergenic | 50.0% | |
GTCAGTTGAGCTAGGACTTC+TGG | - | chr2.1:26183927-26183946 | MS.gene56595:intron | 50.0% | |
TACCGGAACTTTCTGCTGAC+CGG | - | chr2.1:26184505-26184524 | MS.gene56595:intron | 50.0% | |
TAGAAACTCACACGCACCGA+TGG | - | chr2.1:26183847-26183866 | MS.gene56595:intron | 50.0% | |
! | CGAAGCTTGGTGGGTCTAAA+GGG | - | chr2.1:26182335-26182354 | MS.gene56595:intron | 50.0% |
! | GAGGTATCCACATCGAAGCT+TGG | - | chr2.1:26182322-26182341 | MS.gene56595:intron | 50.0% |
! | TCGAAGCTTGGTGGGTCTAA+AGG | - | chr2.1:26182334-26182353 | MS.gene56595:intron | 50.0% |
!!! | GTACGGTTTTGGATCCTCTC+CGG | + | chr2.1:26184527-26184546 | None:intergenic | 50.0% |
AGACCCACCAAGCTTCGATG+TGG | + | chr2.1:26182332-26182351 | None:intergenic | 55.0% | |
CAGGTTTCTGTCTCGTCCGA+AGG | - | chr2.1:26186154-26186173 | MS.gene56595:intron | 55.0% | |
CGAAGGGATTCCATCTACCG+CGG | - | chr2.1:26186171-26186190 | MS.gene56595:intron | 55.0% | |
CGCGGTAGATGGAATCCCTT+CGG | + | chr2.1:26186173-26186192 | None:intergenic | 55.0% | |
CTCCGGTCAGCAGAAAGTTC+CGG | + | chr2.1:26184510-26184529 | None:intergenic | 55.0% | |
GAACTTTCTGCTGACCGGAG+AGG | - | chr2.1:26184510-26184529 | MS.gene56595:intron | 55.0% | |
GCGGCAGGCTCCATTTCATT+AGG | + | chr2.1:26181963-26181982 | None:intergenic | 55.0% | |
GGCGTCAAGGTCTATGCTTC+TGG | - | chr2.1:26185466-26185485 | MS.gene56595:intron | 55.0% | |
TCGAACCCCGGCTCTTCCAT+CGG | + | chr2.1:26183866-26183885 | None:intergenic | 60.0% | |
! | ACACGCACCGATGGAAGAGC+CGG | - | chr2.1:26183856-26183875 | MS.gene56595:intron | 60.0% |
CCATCACGTGGCAGTGGCTG+AGG | - | chr2.1:26184363-26184382 | MS.gene56595:intron | 65.0% | |
CCTCAGCCACTGCCACGTGA+TGG | + | chr2.1:26184366-26184385 | None:intergenic | 65.0% | |
! | ACGCACCGATGGAAGAGCCG+GGG | - | chr2.1:26183858-26183877 | MS.gene56595:intron | 65.0% |
! | CACGCACCGATGGAAGAGCC+GGG | - | chr2.1:26183857-26183876 | MS.gene56595:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 26181756 | 26186315 | 26181756 | ID=MS.gene56595 |
chr2.1 | mRNA | 26181756 | 26186315 | 26181756 | ID=MS.gene56595.t1;Parent=MS.gene56595 |
chr2.1 | exon | 26186282 | 26186315 | 26186282 | ID=MS.gene56595.t1.exon1;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26186282 | 26186315 | 26186282 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
chr2.1 | exon | 26184734 | 26184760 | 26184734 | ID=MS.gene56595.t1.exon2;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26184734 | 26184760 | 26184734 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
chr2.1 | exon | 26183207 | 26183308 | 26183207 | ID=MS.gene56595.t1.exon3;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26183207 | 26183308 | 26183207 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
chr2.1 | exon | 26182479 | 26182634 | 26182479 | ID=MS.gene56595.t1.exon4;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26182479 | 26182634 | 26182479 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
chr2.1 | exon | 26181989 | 26182203 | 26181989 | ID=MS.gene56595.t1.exon5;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26181989 | 26182203 | 26181989 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
chr2.1 | exon | 26181756 | 26181914 | 26181756 | ID=MS.gene56595.t1.exon6;Parent=MS.gene56595.t1 |
chr2.1 | CDS | 26181756 | 26181914 | 26181756 | ID=cds.MS.gene56595.t1;Parent=MS.gene56595.t1 |
Gene Sequence |
Protein sequence |