Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054638.t1 | XP_024633407.1 | 96.8 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 1.20E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054638.t1 | Q9ZST9 | 84.5 | 252 | 39 | 0 | 1 | 252 | 1 | 252 | 2.9e-118 | 426.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054638.t1 | G7J6C8 | 96.8 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 8.6e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049627 | MS.gene054638 | 0.823901 | 1.08E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene054638 | 0.815838 | 7.53E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene054638 | 0.817841 | 2.68E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene054638 | 0.836286 | 1.02E-56 | -1.69E-46 |
| MS.gene050876 | MS.gene054638 | 0.834865 | 2.34E-56 | -1.69E-46 |
| MS.gene05087 | MS.gene054638 | 0.878917 | 1.90E-69 | -1.69E-46 |
| MS.gene050904 | MS.gene054638 | 0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene055634 | 0.825833 | 3.78E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene055849 | 0.811086 | 8.34E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene056692 | 0.829949 | 3.87E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene057148 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene057872 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene058335 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene059026 | 0.840982 | 6.26E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene060703 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene06077 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene062294 | 0.827845 | 1.25E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene062700 | 0.830773 | 2.43E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene06298 | -0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene063080 | 0.806209 | 9.19E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene063091 | 0.819257 | 1.28E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene064435 | 0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene064971 | 0.820861 | 5.48E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene065502 | 0.827089 | 1.90E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene065658 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene06608 | 0.831233 | 1.88E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene066565 | 0.843651 | 1.23E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene066844 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene067401 | -0.812225 | 4.72E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene067978 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene071900 | 0.816877 | 4.41E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene071901 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene072496 | 0.803211 | 3.88E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene07349 | 0.842109 | 3.16E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene073565 | 0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene073608 | 0.825772 | 3.91E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene073640 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene073878 | -0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene074194 | 0.810938 | 8.99E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene09661 | 0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene09720 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene20892 | 0.804458 | 2.14E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene20919 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene21128 | 0.844288 | 8.29E-59 | -1.69E-46 |
| MS.gene054638 | MS.gene22377 | 0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene22667 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene22670 | 0.829341 | 5.43E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene22726 | 0.814916 | 1.21E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene23018 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene23115 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene24474 | 0.831786 | 1.37E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene24674 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene24726 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene24767 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene24905 | 0.853878 | 1.79E-61 | -1.69E-46 |
| MS.gene054638 | MS.gene25666 | 0.83505 | 2.10E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene25675 | 0.82856 | 8.40E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene25677 | 0.829102 | 6.21E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene26384 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene26579 | 0.849526 | 3.06E-60 | -1.69E-46 |
| MS.gene054638 | MS.gene26662 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene26698 | 0.813141 | 2.97E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene26946 | 0.832205 | 1.08E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene27328 | 0.808522 | 2.97E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene31552 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene32026 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene32251 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene34678 | 0.801025 | 1.09E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene38719 | 0.973602 | 1.05E-136 | -1.69E-46 |
| MS.gene054638 | MS.gene39520 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene39577 | 0.845971 | 2.91E-59 | -1.69E-46 |
| MS.gene054638 | MS.gene40252 | 0.829975 | 3.81E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene40702 | 0.842506 | 2.48E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene41234 | 0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene41633 | 0.801222 | 9.97E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene42342 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene43492 | 0.843172 | 1.65E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene44543 | 0.860867 | 1.53E-63 | -1.69E-46 |
| MS.gene054638 | MS.gene45408 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene45433 | 0.823359 | 1.45E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene45693 | 0.845899 | 3.04E-59 | -1.69E-46 |
| MS.gene054638 | MS.gene45806 | 0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene47475 | 0.82382 | 1.13E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene47527 | 0.846676 | 1.87E-59 | -1.69E-46 |
| MS.gene054638 | MS.gene47809 | 0.837331 | 5.54E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene47951 | 0.806438 | 8.23E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene48276 | 0.803644 | 3.16E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene48379 | 0.811782 | 5.89E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene49569 | 0.80937 | 1.96E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene49694 | 0.864632 | 1.06E-64 | -1.69E-46 |
| MS.gene054638 | MS.gene52289 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene55685 | 0.866034 | 3.83E-65 | -1.69E-46 |
| MS.gene054638 | MS.gene56456 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene56595 | 0.809941 | 1.48E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene56878 | 0.844184 | 8.85E-59 | -1.69E-46 |
| MS.gene054638 | MS.gene60366 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene62058 | 0.858659 | 7.08E-63 | -1.69E-46 |
| MS.gene054638 | MS.gene62850 | 0.803299 | 3.72E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene63457 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene054638 | MS.gene63951 | 0.825405 | 4.77E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene65990 | 0.81157 | 6.55E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene66458 | 0.849607 | 2.90E-60 | -1.69E-46 |
| MS.gene054638 | MS.gene68138 | 0.809865 | 1.53E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene68738 | 0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene69325 | 0.839701 | 1.35E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene69332 | 0.843395 | 1.44E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene69734 | 0.829924 | 3.92E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene70201 | 0.838616 | 2.59E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene71259 | 0.810822 | 9.52E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene71267 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene71268 | 0.801326 | 9.49E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene71710 | 0.806367 | 8.51E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene71742 | 0.863399 | 2.56E-64 | -1.69E-46 |
| MS.gene054638 | MS.gene71891 | 0.813862 | 2.06E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene72004 | 0.837386 | 5.36E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene72019 | 0.851615 | 7.91E-61 | -1.69E-46 |
| MS.gene054638 | MS.gene72106 | 0.805842 | 1.10E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene72108 | 0.847738 | 9.56E-60 | -1.69E-46 |
| MS.gene054638 | MS.gene72118 | 0.826754 | 2.28E-54 | -1.69E-46 |
| MS.gene054638 | MS.gene72216 | 0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene72363 | 0.841505 | 4.56E-58 | -1.69E-46 |
| MS.gene054638 | MS.gene73461 | 0.858125 | 1.02E-62 | -1.69E-46 |
| MS.gene054638 | MS.gene74217 | 0.814657 | 1.38E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene75423 | 0.835176 | 1.95E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene75639 | 0.835701 | 1.44E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene76503 | 0.837113 | 6.29E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene77384 | 0.831854 | 1.32E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene78487 | 0.821713 | 3.49E-53 | -1.69E-46 |
| MS.gene054638 | MS.gene80239 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene82401 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene82403 | 0.815339 | 9.72E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene83611 | -0.813958 | 1.97E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene84043 | 0.807763 | 4.31E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene84413 | 0.839001 | 2.06E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene85119 | 0.828783 | 7.42E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene86206 | 0.805259 | 1.46E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene89018 | -0.829789 | 4.23E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene89091 | 0.836977 | 6.82E-57 | -1.69E-46 |
| MS.gene054638 | MS.gene90796 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene92042 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene92976 | 0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene93734 | 0.828725 | 7.66E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene93735 | 0.8102 | 1.30E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene94848 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene95037 | 0.851375 | 9.24E-61 | -1.69E-46 |
| MS.gene054638 | MS.gene95056 | 0.81185 | 5.70E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene95638 | 0.829895 | 3.98E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene96524 | 0.815589 | 8.56E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene97862 | 0.807683 | 4.48E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene97937 | 0.803724 | 3.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054638.t1 | MTR_3g101630 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene054638.t1 | MTR_3g101630 | 96.257 | 187 | 7 | 0 | 1 | 187 | 1 | 187 | 1.08e-133 | 375 |
| MS.gene054638.t1 | MTR_8g081030 | 40.254 | 236 | 111 | 7 | 20 | 240 | 16 | 236 | 6.80e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054638.t1 | AT4G33350 | 64.552 | 268 | 74 | 5 | 1 | 250 | 1 | 265 | 1.15e-119 | 342 |
| MS.gene054638.t1 | AT4G33350 | 57.836 | 268 | 66 | 5 | 1 | 250 | 1 | 239 | 1.40e-101 | 295 |
| MS.gene054638.t1 | AT3G23710 | 42.211 | 199 | 101 | 6 | 52 | 240 | 109 | 303 | 3.79e-44 | 151 |
| MS.gene054638.t1 | AT3G23710 | 42.143 | 140 | 77 | 2 | 52 | 187 | 109 | 248 | 2.48e-30 | 114 |
Find 63 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCTGTTCAAGAGTTAT+TGG | 0.204138 | 3.4:-89473469 | None:intergenic |
| TACCAGATCCACTTCAAATA+AGG | 0.261652 | 3.4:+89474127 | MS.gene054638:CDS |
| TCAACATATACAAGAAATTA+AGG | 0.262989 | 3.4:+89476288 | MS.gene054638:CDS |
| TTGCTTACAGTCAGAACTTT+TGG | 0.296051 | 3.4:+89474822 | MS.gene054638:intron |
| TGCGAGTGTGAGATTGAATT+AGG | 0.307685 | 3.4:-89473133 | None:intergenic |
| GGAAAGCTTCAGCGTCTTCT+TGG | 0.311162 | 3.4:-89473307 | None:intergenic |
| GGAGGTTCCGGCGAGGGATT+TGG | 0.319748 | 3.4:-89473198 | None:intergenic |
| TATTGAACAGGAACTATCTA+AGG | 0.328688 | 3.4:+89475514 | MS.gene054638:CDS |
| AGGAACTATCTAAGGTTTCC+AGG | 0.374565 | 3.4:+89475522 | MS.gene054638:CDS |
| TCCATCAAAACCTTCCTTGC+TGG | 0.381167 | 3.4:-89474437 | None:intergenic |
| CAGATGAGTGAAAAGAATTC+CGG | 0.382067 | 3.4:+89476223 | MS.gene054638:intron |
| TTGCCCTGTATATTTCTCTA+AGG | 0.385806 | 3.4:+89474870 | MS.gene054638:CDS |
| ATTCTATACCATTATTTGCT+TGG | 0.386433 | 3.4:-89475567 | None:intergenic |
| TTCCTTATTTGAAGTGGATC+TGG | 0.389220 | 3.4:-89474129 | None:intergenic |
| CAAGGTGGTTACAGTGTTGA+TGG | 0.389724 | 3.4:-89473073 | None:intergenic |
| CGCTGAAGCTTTCCTTGCTC+AGG | 0.397790 | 3.4:+89473316 | MS.gene054638:CDS |
| CAAACCTTAGAGAAATATAC+AGG | 0.430319 | 3.4:-89474874 | None:intergenic |
| GTTAAAGCGGCGGCGAAAGC+GGG | 0.432701 | 3.4:-89473161 | None:intergenic |
| TGTTCCAATAACTCTTGAAC+AGG | 0.433983 | 3.4:+89473465 | MS.gene054638:CDS |
| GTGAGATTGAATTAGGGTTC+CGG | 0.435865 | 3.4:-89473126 | None:intergenic |
| TGGAGTTTCCAAGCAAATAA+TGG | 0.452005 | 3.4:+89475559 | MS.gene054638:CDS |
| GACGGTGTAAACGGAGGTTC+CGG | 0.452524 | 3.4:-89473210 | None:intergenic |
| GCGAGTGTGAGATTGAATTA+GGG | 0.455909 | 3.4:-89473132 | None:intergenic |
| AGCGGCGGCGAAAGCGGGGT+TGG | 0.456106 | 3.4:-89473156 | None:intergenic |
| CTCAGAGCCGCCAGCAAGGA+AGG | 0.460599 | 3.4:+89474427 | MS.gene054638:CDS |
| GAGGGATTTGGCGACGTTGT+TGG | 0.462263 | 3.4:-89473186 | None:intergenic |
| GGAACTACTGACGGTGTAAA+CGG | 0.467319 | 3.4:-89473219 | None:intergenic |
| GTATACTTGTTGAAGGTTGA+AGG | 0.475034 | 3.4:+89474087 | MS.gene054638:CDS |
| AGTGCATTCCTTATTTGAAG+TGG | 0.479288 | 3.4:-89474135 | None:intergenic |
| GTTATAGGTATACTTGTTGA+AGG | 0.482950 | 3.4:+89474080 | MS.gene054638:intron |
| CATCAGAACGAATTCATTGT+TGG | 0.485434 | 3.4:-89473240 | None:intergenic |
| TGGACAGGAAGATATTGAAC+AGG | 0.507901 | 3.4:+89475502 | MS.gene054638:intron |
| GAAGTGGATCTGGTAAGAAT+CGG | 0.513973 | 3.4:-89474119 | None:intergenic |
| ATTATTTGCTTGGAAACTCC+AGG | 0.515291 | 3.4:-89475557 | None:intergenic |
| GCTGAAGGTGCTAAGTCCAT+TGG | 0.515881 | 3.4:+89473269 | MS.gene054638:CDS |
| TTCATTGTTGGAACTACTGA+CGG | 0.538242 | 3.4:-89473228 | None:intergenic |
| TTTCTTGTATATGTTGAGAA+CGG | 0.540120 | 3.4:-89476282 | None:intergenic |
| TCCAGGGTATCTAAAAGTCC+TGG | 0.546198 | 3.4:+89475539 | MS.gene054638:CDS |
| ACTTCAAATAAGGAATGCAC+TGG | 0.568685 | 3.4:+89474137 | MS.gene054638:CDS |
| GTAAACGGAGGTTCCGGCGA+GGG | 0.577581 | 3.4:-89473204 | None:intergenic |
| GCGAAAGCAAAGCAATCCAA+TGG | 0.584246 | 3.4:-89473285 | None:intergenic |
| TGAATTTCGAGGCAATGCTA+AGG | 0.584914 | 3.4:+89473441 | MS.gene054638:CDS |
| TGTCTTCAAAACGAGTTGCA+AGG | 0.588693 | 3.4:-89473091 | None:intergenic |
| AGTTAAAGCGGCGGCGAAAG+CGG | 0.589283 | 3.4:-89473162 | None:intergenic |
| GGACTTAGCACCTTCAGCAT+CGG | 0.600686 | 3.4:-89473264 | None:intergenic |
| GACGTTGTTGGAAGTTAAAG+CGG | 0.609660 | 3.4:-89473174 | None:intergenic |
| GGAACTATCTAAGGTTTCCA+GGG | 0.610500 | 3.4:+89475523 | MS.gene054638:CDS |
| TCAGCTCAGAGCCGCCAGCA+AGG | 0.614025 | 3.4:+89474423 | MS.gene054638:intron |
| TCAAATAAGGAATGCACTGG+AGG | 0.614598 | 3.4:+89474140 | MS.gene054638:CDS |
| AGAGGAACGTTACCTGAGCA+AGG | 0.617638 | 3.4:-89473328 | None:intergenic |
| AACGTCGCCAAATCCCTCGC+CGG | 0.619652 | 3.4:+89473191 | MS.gene054638:CDS |
| AACCGCGAAAATGATAGAAG+CGG | 0.620119 | 3.4:-89473047 | None:intergenic |
| TTAAAGCGGCGGCGAAAGCG+GGG | 0.621674 | 3.4:-89473160 | None:intergenic |
| GAGTGAAAAGAATTCCGGAT+GGG | 0.636301 | 3.4:+89476228 | MS.gene054638:CDS |
| ATCAAAACCTTCCTTGCTGG+CGG | 0.637557 | 3.4:-89474434 | None:intergenic |
| TGAGTGAAAAGAATTCCGGA+TGG | 0.637585 | 3.4:+89476227 | MS.gene054638:CDS |
| AAATGGAGTCACAAGGACAG+TGG | 0.653796 | 3.4:+89473021 | None:intergenic |
| TGTAAACGGAGGTTCCGGCG+AGG | 0.668767 | 3.4:-89473205 | None:intergenic |
| GTTCTGATGTCCGATGCTGA+AGG | 0.674395 | 3.4:+89473254 | MS.gene054638:CDS |
| GTTGTTGGAAGTTAAAGCGG+CGG | 0.684073 | 3.4:-89473171 | None:intergenic |
| CTTCAAAACGAGTTGCAAGG+TGG | 0.698132 | 3.4:-89473088 | None:intergenic |
| AAACCTTAGAGAAATATACA+GGG | 0.722468 | 3.4:-89474873 | None:intergenic |
| ACTACTGACGGTGTAAACGG+AGG | 0.722610 | 3.4:-89473216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTAAATTAAAAATAG+AGG | - | chr3.4:89474966-89474985 | None:intergenic | 10.0% |
| !! | ATTTCTAAATTAAAAATAGA+GGG | - | chr3.4:89474965-89474984 | None:intergenic | 10.0% |
| !!! | AATAAAGTTAAATTGTTTTT+TGG | - | chr3.4:89473735-89473754 | None:intergenic | 10.0% |
| !!! | TTTATGTTTCTTTAATTTTA+TGG | + | chr3.4:89475719-89475738 | MS.gene054638:intron | 10.0% |
| !! | ATAATTTATCATTCATTTGA+AGG | + | chr3.4:89476034-89476053 | MS.gene054638:intron | 15.0% |
| !! | ATTGGTATAGTTAATAATAT+AGG | + | chr3.4:89476156-89476175 | MS.gene054638:intron | 15.0% |
| !! | ATTTCATTGATACATAAATT+AGG | - | chr3.4:89473848-89473867 | None:intergenic | 15.0% |
| !! | TTCAATTATGATAATTAAAC+AGG | + | chr3.4:89476076-89476095 | MS.gene054638:intron | 15.0% |
| !!! | TATTTTTAATTACGCAATTT+TGG | + | chr3.4:89474997-89475016 | MS.gene054638:intron | 15.0% |
| !! | AAAATTGAAATCAGAACATA+AGG | - | chr3.4:89475939-89475958 | None:intergenic | 20.0% |
| !! | AAATGTGATTATTAGTCAAT+AGG | - | chr3.4:89474804-89474823 | None:intergenic | 20.0% |
| !! | ATATAGATATGAATTCAAAG+GGG | - | chr3.4:89473885-89473904 | None:intergenic | 20.0% |
| !! | ATCTTCATTGTTAAACATTT+AGG | + | chr3.4:89475318-89475337 | MS.gene054638:intron | 20.0% |
| !! | ATTATGATAATTAAACAGGT+TGG | + | chr3.4:89476080-89476099 | MS.gene054638:intron | 20.0% |
| !! | CATATAGATATGAATTCAAA+GGG | - | chr3.4:89473886-89473905 | None:intergenic | 20.0% |
| !! | CTTTGAATTCATATCTATAT+GGG | + | chr3.4:89473885-89473904 | MS.gene054638:intron | 20.0% |
| !! | TAATAATATAGGAAGCAATT+TGG | + | chr3.4:89476167-89476186 | MS.gene054638:intron | 20.0% |
| !! | TCAACATATACAAGAAATTA+AGG | + | chr3.4:89476288-89476307 | MS.gene054638:CDS | 20.0% |
| !! | TCATCATCATAGTTAAAAAT+TGG | - | chr3.4:89475043-89475062 | None:intergenic | 20.0% |
| !! | TCTTCATTGTTAAACATTTA+GGG | + | chr3.4:89475319-89475338 | MS.gene054638:intron | 20.0% |
| !!! | ATAAAAACACATTTTTGGAT+GGG | + | chr3.4:89475742-89475761 | MS.gene054638:intron | 20.0% |
| !!! | ATAAATTTTGTTAAACCGTT+TGG | + | chr3.4:89473629-89473648 | MS.gene054638:intron | 20.0% |
| !!! | ATATGATAGTTTTTGTTTGT+TGG | + | chr3.4:89475474-89475493 | MS.gene054638:intron | 20.0% |
| !!! | ATTTGTTTTAGTGCTATAAA+TGG | + | chr3.4:89475687-89475706 | MS.gene054638:intron | 20.0% |
| !!! | TAAATTTTGTTAAACCGTTT+GGG | + | chr3.4:89473630-89473649 | MS.gene054638:intron | 20.0% |
| !!! | TAATAGTAAAGTTTGCTTAT+TGG | + | chr3.4:89476138-89476157 | MS.gene054638:intron | 20.0% |
| !!! | TATGGATAAAAACACATTTT+TGG | + | chr3.4:89475737-89475756 | MS.gene054638:intron | 20.0% |
| !!! | TCAGTTTTAAATGTAAATCA+TGG | + | chr3.4:89474271-89474290 | MS.gene054638:intron | 20.0% |
| !!! | TTTTTGAAGCATAATAAGTA+TGG | + | chr3.4:89474021-89474040 | MS.gene054638:intron | 20.0% |
| ! | AAAAAACAAATTACTGAGAG+AGG | - | chr3.4:89473349-89473368 | None:intergenic | 25.0% |
| ! | AAACCTTAGAGAAATATACA+GGG | - | chr3.4:89474876-89474895 | None:intergenic | 25.0% |
| ! | AGATGTACTTAAAAAAATGG+AGG | + | chr3.4:89476112-89476131 | MS.gene054638:CDS | 25.0% |
| ! | ATACATAAATTAGGCAGTTA+TGG | - | chr3.4:89473839-89473858 | None:intergenic | 25.0% |
| ! | ATTAACCCTAAATCTTAGTT+AGG | + | chr3.4:89475427-89475446 | MS.gene054638:intron | 25.0% |
| ! | ATTCTATACCATTATTTGCT+TGG | - | chr3.4:89475570-89475589 | None:intergenic | 25.0% |
| ! | CAGATACTAAAATAGTTTGA+TGG | - | chr3.4:89474717-89474736 | None:intergenic | 25.0% |
| ! | CCATATAGATATGAATTCAA+AGG | - | chr3.4:89473887-89473906 | None:intergenic | 25.0% |
| ! | CCTTTGAATTCATATCTATA+TGG | + | chr3.4:89473884-89473903 | MS.gene054638:intron | 25.0% |
| ! | CGAAGATGTACTTAAAAAAA+TGG | + | chr3.4:89476109-89476128 | MS.gene054638:CDS | 25.0% |
| ! | GCTAGAATGAAATGAAAAAT+AGG | + | chr3.4:89475358-89475377 | MS.gene054638:intron | 25.0% |
| ! | TAACATATAAATTCCAAGAC+TGG | + | chr3.4:89474676-89474695 | MS.gene054638:intron | 25.0% |
| ! | TATAGATATGAATTCAAAGG+GGG | - | chr3.4:89473884-89473903 | None:intergenic | 25.0% |
| ! | TATATCAGTAGCTATAAGTT+TGG | + | chr3.4:89474586-89474605 | MS.gene054638:intron | 25.0% |
| ! | TGCGTAATTAAAAATATCGA+GGG | - | chr3.4:89474993-89475012 | None:intergenic | 25.0% |
| ! | TGTGTAATACAAAAAACACT+CGG | + | chr3.4:89475241-89475260 | MS.gene054638:intron | 25.0% |
| ! | TTACCCGTTATTAAAAGTAA+AGG | - | chr3.4:89473979-89473998 | None:intergenic | 25.0% |
| ! | TTGCGTAATTAAAAATATCG+AGG | - | chr3.4:89474994-89475013 | None:intergenic | 25.0% |
| ! | TTTCTTGTATATGTTGAGAA+CGG | - | chr3.4:89476285-89476304 | None:intergenic | 25.0% |
| !! | ACATGTTTTCTTGAATAAAC+AGG | + | chr3.4:89475875-89475894 | MS.gene054638:intron | 25.0% |
| !! | ACTGTTTTCATAAACTATCT+TGG | - | chr3.4:89473677-89473696 | None:intergenic | 25.0% |
| !! | CATGTTTTCTTGAATAAACA+GGG | + | chr3.4:89475876-89475895 | MS.gene054638:intron | 25.0% |
| !!! | ACACCTTTACTTTTAATAAC+GGG | + | chr3.4:89473973-89473992 | MS.gene054638:intron | 25.0% |
| !!! | CACACCTTTACTTTTAATAA+CGG | + | chr3.4:89473972-89473991 | MS.gene054638:intron | 25.0% |
| !!! | GATAAAAACACATTTTTGGA+TGG | + | chr3.4:89475741-89475760 | MS.gene054638:intron | 25.0% |
| !!! | GATGATGAAAATACTAGTTT+TGG | - | chr3.4:89474209-89474228 | None:intergenic | 25.0% |
| !!! | GATTGCTTTTAATTCACTAA+GGG | + | chr3.4:89473583-89473602 | MS.gene054638:intron | 25.0% |
| !!! | GTTTTAAATGTAAATCATGG+AGG | + | chr3.4:89474274-89474293 | MS.gene054638:intron | 25.0% |
| !!! | GTTTTTGTTTGTTGGTTAAA+TGG | + | chr3.4:89475482-89475501 | MS.gene054638:intron | 25.0% |
| !!! | TTACTTTTAATAACGGGTAA+GGG | + | chr3.4:89473979-89473998 | MS.gene054638:intron | 25.0% |
| !!! | TTCAAATTGTTATTTTCGCA+TGG | - | chr3.4:89475774-89475793 | None:intergenic | 25.0% |
| !!! | TTTACTTTTAATAACGGGTA+AGG | + | chr3.4:89473978-89473997 | MS.gene054638:intron | 25.0% |
| !!! | TTTTAACTATGATGATGATG+TGG | + | chr3.4:89475045-89475064 | MS.gene054638:intron | 25.0% |
| AAAAATCAAATCATCCCATC+CGG | - | chr3.4:89476245-89476264 | None:intergenic | 30.0% | |
| AACAACTACACCAACTTAAT+GGG | + | chr3.4:89475184-89475203 | MS.gene054638:intron | 30.0% | |
| AACAAGTATACCTATAACAC+AGG | - | chr3.4:89474078-89474097 | None:intergenic | 30.0% | |
| ACATGCCTAACTAAGATTTA+GGG | - | chr3.4:89475435-89475454 | None:intergenic | 30.0% | |
| AGAAAACATACCTGAAAAAC+AGG | - | chr3.4:89474466-89474485 | None:intergenic | 30.0% | |
| AGAAAAGTTGTTACAGATAC+AGG | - | chr3.4:89474054-89474073 | None:intergenic | 30.0% | |
| ATATGTTACATACCATGCAT+TGG | - | chr3.4:89474664-89474683 | None:intergenic | 30.0% | |
| ATGAAATAAGTTCTCCCAAA+CGG | - | chr3.4:89473647-89473666 | None:intergenic | 30.0% | |
| ATGGAAAATGTTAGGAGAAA+AGG | + | chr3.4:89475847-89475866 | MS.gene054638:intron | 30.0% | |
| ATTTATATCAGACTCCAGAT+GGG | - | chr3.4:89474740-89474759 | None:intergenic | 30.0% | |
| CAAACCTTAGAGAAATATAC+AGG | - | chr3.4:89474877-89474896 | None:intergenic | 30.0% | |
| CAGGGAAATATTTATGTTTG+TGG | + | chr3.4:89475894-89475913 | MS.gene054638:intron | 30.0% | |
| GAACTATAGTCTCATACATA+GGG | - | chr3.4:89475798-89475817 | None:intergenic | 30.0% | |
| GTTTAACAATGAAGATGATG+CGG | - | chr3.4:89475314-89475333 | None:intergenic | 30.0% | |
| TAACAACTACACCAACTTAA+TGG | + | chr3.4:89475183-89475202 | MS.gene054638:intron | 30.0% | |
| TACATGCCTAACTAAGATTT+AGG | - | chr3.4:89475436-89475455 | None:intergenic | 30.0% | |
| TATTGAACAGGAACTATCTA+AGG | + | chr3.4:89475514-89475533 | MS.gene054638:CDS | 30.0% | |
| TATTTATATCAGACTCCAGA+TGG | - | chr3.4:89474741-89474760 | None:intergenic | 30.0% | |
| TGAACTATAGTCTCATACAT+AGG | - | chr3.4:89475799-89475818 | None:intergenic | 30.0% | |
| TGCATATTGACCATAATAGA+GGG | - | chr3.4:89474935-89474954 | None:intergenic | 30.0% | |
| TGGAAAATGTTAGGAGAAAA+GGG | + | chr3.4:89475848-89475867 | MS.gene054638:intron | 30.0% | |
| TGTAAATCATGGAGGAAAAT+AGG | + | chr3.4:89474282-89474301 | MS.gene054638:intron | 30.0% | |
| TTGCATATTGACCATAATAG+AGG | - | chr3.4:89474936-89474955 | None:intergenic | 30.0% | |
| TTGTGTGCAACAATTATAAC+CGG | - | chr3.4:89474172-89474191 | None:intergenic | 30.0% | |
| TTTCTTCCATGGAAAATGTT+AGG | + | chr3.4:89475839-89475858 | MS.gene054638:intron | 30.0% | |
| ! | AGTTCTTTAGAGGACTAATT+GGG | + | chr3.4:89474502-89474521 | MS.gene054638:intron | 30.0% |
| ! | CTTCAGCATAATTGTTTTCA+AGG | - | chr3.4:89475662-89475681 | None:intergenic | 30.0% |
| ! | GTTATAGGTATACTTGTTGA+AGG | + | chr3.4:89474080-89474099 | MS.gene054638:intron | 30.0% |
| ! | TCAGGTATGTTTTCTTACTT+TGG | + | chr3.4:89474471-89474490 | MS.gene054638:intron | 30.0% |
| ! | TTTAGGGTTAATTGCACTTA+TGG | - | chr3.4:89475419-89475438 | None:intergenic | 30.0% |
| ! | TTTTCTCCTAACATTTTCCA+TGG | - | chr3.4:89475848-89475867 | None:intergenic | 30.0% |
| !! | AATGTTTTGCTCGTTGTTTT+AGG | + | chr3.4:89473402-89473421 | MS.gene054638:intron | 30.0% |
| !! | CGATTGCTTTTAATTCACTA+AGG | + | chr3.4:89473582-89473601 | MS.gene054638:intron | 30.0% |
| !! | TTCAAAAAGTATCTGATTGC+AGG | - | chr3.4:89474009-89474028 | None:intergenic | 30.0% |
| !!! | TACTTTTAATAACGGGTAAG+GGG | + | chr3.4:89473980-89473999 | MS.gene054638:intron | 30.0% |
| ACTACCTGTTCAAGAGTTAT+TGG | - | chr3.4:89473472-89473491 | None:intergenic | 35.0% | |
| ACTTCAAATAAGGAATGCAC+TGG | + | chr3.4:89474137-89474156 | MS.gene054638:CDS | 35.0% | |
| ATCGAGTACGAAATACAGAT+TGG | - | chr3.4:89473566-89473585 | None:intergenic | 35.0% | |
| ATTATTTGCTTGGAAACTCC+AGG | - | chr3.4:89475560-89475579 | None:intergenic | 35.0% | |
| ATTGAATACGTGAAACGACA+TGG | + | chr3.4:89475084-89475103 | MS.gene054638:intron | 35.0% | |
| ATTGCAGTTAAAGAGACCAA+TGG | - | chr3.4:89474906-89474925 | None:intergenic | 35.0% | |
| ATTGGCTGCAGTTAATTACT+TGG | - | chr3.4:89474646-89474665 | None:intergenic | 35.0% | |
| CAGATGAGTGAAAAGAATTC+CGG | + | chr3.4:89476223-89476242 | MS.gene054638:intron | 35.0% | |
| CATCAGAACGAATTCATTGT+TGG | - | chr3.4:89473243-89473262 | None:intergenic | 35.0% | |
| CGTAATATGCATGATAGTTG+CGG | + | chr3.4:89474309-89474328 | MS.gene054638:intron | 35.0% | |
| GCTTATCTGAGCTTATTTAG+TGG | + | chr3.4:89473605-89473624 | MS.gene054638:intron | 35.0% | |
| GTAATACAAAAAACACTCGG+TGG | + | chr3.4:89475244-89475263 | MS.gene054638:intron | 35.0% | |
| TAATTATCTCCTGCTAATGC+TGG | + | chr3.4:89473507-89473526 | MS.gene054638:intron | 35.0% | |
| TACCAGATCCACTTCAAATA+AGG | + | chr3.4:89474127-89474146 | MS.gene054638:CDS | 35.0% | |
| TCACGGAAAAATGAATTTCG+AGG | + | chr3.4:89473430-89473449 | MS.gene054638:CDS | 35.0% | |
| TGGAGTTTCCAAGCAAATAA+TGG | + | chr3.4:89475559-89475578 | MS.gene054638:CDS | 35.0% | |
| TGTTCCAATAACTCTTGAAC+AGG | + | chr3.4:89473465-89473484 | MS.gene054638:CDS | 35.0% | |
| TTAGGGACAACTTGACTAAT+GGG | + | chr3.4:89475336-89475355 | MS.gene054638:intron | 35.0% | |
| TTCATTGTTGGAACTACTGA+CGG | - | chr3.4:89473231-89473250 | None:intergenic | 35.0% | |
| TTGAACATGTGAAGCTAAGA+CGG | - | chr3.4:89475270-89475289 | None:intergenic | 35.0% | |
| TTGCAGTTAAAGAGACCAAT+GGG | - | chr3.4:89474905-89474924 | None:intergenic | 35.0% | |
| TTGCCCTGTATATTTCTCTA+AGG | + | chr3.4:89474870-89474889 | MS.gene054638:CDS | 35.0% | |
| TTTAGGGACAACTTGACTAA+TGG | + | chr3.4:89475335-89475354 | MS.gene054638:intron | 35.0% | |
| TTTGAAAACTCTGACAAACC+AGG | - | chr3.4:89475978-89475997 | None:intergenic | 35.0% | |
| ! | AACTTTTCTGCCTGTGTTAT+AGG | + | chr3.4:89474065-89474084 | MS.gene054638:intron | 35.0% |
| ! | AAGTAAAGGTGTGACATTCA+TGG | - | chr3.4:89473965-89473984 | None:intergenic | 35.0% |
| ! | AGTGCATTCCTTATTTGAAG+TGG | - | chr3.4:89474138-89474157 | None:intergenic | 35.0% |
| ! | CAATTAGTCCTCTAAAGAAC+TGG | - | chr3.4:89474503-89474522 | None:intergenic | 35.0% |
| ! | CAGTTCTTTAGAGGACTAAT+TGG | + | chr3.4:89474501-89474520 | MS.gene054638:intron | 35.0% |
| ! | CTTTTGTGATCTTTCTTCCA+TGG | + | chr3.4:89475828-89475847 | MS.gene054638:intron | 35.0% |
| ! | GTATACTTGTTGAAGGTTGA+AGG | + | chr3.4:89474087-89474106 | MS.gene054638:CDS | 35.0% |
| ! | GTTCTTTAGAGGACTAATTG+GGG | + | chr3.4:89474503-89474522 | MS.gene054638:intron | 35.0% |
| ! | TAACTATGATGATGATGTGG+CGG | + | chr3.4:89475048-89475067 | MS.gene054638:intron | 35.0% |
| ! | TGTTTGTTGGTTAAATGGAC+AGG | + | chr3.4:89475487-89475506 | MS.gene054638:intron | 35.0% |
| ! | TTCCTTATTTGAAGTGGATC+TGG | - | chr3.4:89474132-89474151 | None:intergenic | 35.0% |
| ! | TTGCTTACAGTCAGAACTTT+TGG | + | chr3.4:89474822-89474841 | MS.gene054638:intron | 35.0% |
| !! | AATTAGTTCTGTGACTGAAC+AGG | + | chr3.4:89474338-89474357 | MS.gene054638:intron | 35.0% |
| !! | CATCCATACTTGCTATATTC+CGG | - | chr3.4:89475213-89475232 | None:intergenic | 35.0% |
| !! | GATTTGATTTTTATTCCCCC+TGG | + | chr3.4:89476253-89476272 | MS.gene054638:CDS | 35.0% |
| !!! | ACTTTTAATAACGGGTAAGG+GGG | + | chr3.4:89473981-89474000 | MS.gene054638:intron | 35.0% |
| !!! | TATTTTAGTATCTGCCCATC+TGG | + | chr3.4:89474723-89474742 | MS.gene054638:intron | 35.0% |
| AACCGCGAAAATGATAGAAG+CGG | - | chr3.4:89473050-89473069 | None:intergenic | 40.0% | |
| AATTAACTGCAGCCAATGCA+TGG | + | chr3.4:89474649-89474668 | MS.gene054638:intron | 40.0% | |
| ATTGGATGACAACTTGACAG+AGG | - | chr3.4:89475025-89475044 | None:intergenic | 40.0% | |
| CAATTCTGGTCCCTCTATTA+TGG | + | chr3.4:89474922-89474941 | MS.gene054638:intron | 40.0% | |
| CTAAGGTTTGTCTAACCCAT+TGG | + | chr3.4:89474887-89474906 | MS.gene054638:intron | 40.0% | |
| CTACCGGAATATAGCAAGTA+TGG | + | chr3.4:89475207-89475226 | MS.gene054638:intron | 40.0% | |
| GAAGACACAAAAAAACTCGC+CGG | + | chr3.4:89473107-89473126 | MS.gene054638:CDS | 40.0% | |
| GAAGTGGATCTGGTAAGAAT+CGG | - | chr3.4:89474122-89474141 | None:intergenic | 40.0% | |
| GACGTTGTTGGAAGTTAAAG+CGG | - | chr3.4:89473177-89473196 | None:intergenic | 40.0% | |
| GACTAATTGGGGAATGTTGA+GGG | + | chr3.4:89474514-89474533 | MS.gene054638:intron | 40.0% | |
| GAGTGAAAAGAATTCCGGAT+GGG | + | chr3.4:89476228-89476247 | MS.gene054638:CDS | 40.0% | |
| GCGAGTGTGAGATTGAATTA+GGG | - | chr3.4:89473135-89473154 | None:intergenic | 40.0% | |
| GGTCTCTTTAACTGCAATTC+TGG | + | chr3.4:89474908-89474927 | MS.gene054638:intron | 40.0% | |
| GTGAGATTGAATTAGGGTTC+CGG | - | chr3.4:89473129-89473148 | None:intergenic | 40.0% | |
| GTGATAAAACCAGCATTAGC+AGG | - | chr3.4:89473519-89473538 | None:intergenic | 40.0% | |
| TAGTTAGGCATGTAGCTTGA+TGG | + | chr3.4:89475442-89475461 | MS.gene054638:intron | 40.0% | |
| TCAAATAAGGAATGCACTGG+AGG | + | chr3.4:89474140-89474159 | MS.gene054638:CDS | 40.0% | |
| TGAATTTCGAGGCAATGCTA+AGG | + | chr3.4:89473441-89473460 | MS.gene054638:CDS | 40.0% | |
| TGAGTGAAAAGAATTCCGGA+TGG | + | chr3.4:89476227-89476246 | MS.gene054638:CDS | 40.0% | |
| TGCGAGTGTGAGATTGAATT+AGG | - | chr3.4:89473136-89473155 | None:intergenic | 40.0% | |
| TGCTATATGTCAGTAGCACA+TGG | - | chr3.4:89473935-89473954 | None:intergenic | 40.0% | |
| TGGACAGGAAGATATTGAAC+AGG | + | chr3.4:89475502-89475521 | MS.gene054638:intron | 40.0% | |
| TGTCTTCAAAACGAGTTGCA+AGG | - | chr3.4:89473094-89473113 | None:intergenic | 40.0% | |
| TTCCATAGTGACACTGCTAT+AGG | - | chr3.4:89474237-89474256 | None:intergenic | 40.0% | |
| TTTAAGCTGTTTGCCAGTCT+TGG | - | chr3.4:89474692-89474711 | None:intergenic | 40.0% | |
| ! | AGGAACTATCTAAGGTTTCC+AGG | + | chr3.4:89475522-89475541 | MS.gene054638:CDS | 40.0% |
| ! | ATCCGCTTCTATCATTTTCG+CGG | + | chr3.4:89473045-89473064 | MS.gene054638:CDS | 40.0% |
| ! | CTTTTCACTCATCTGCAATG+TGG | - | chr3.4:89476218-89476237 | None:intergenic | 40.0% |
| ! | GGAACTATCTAAGGTTTCCA+GGG | + | chr3.4:89475523-89475542 | MS.gene054638:CDS | 40.0% |
| ! | TTACTGCCAATCTGCACTTT+TGG | - | chr3.4:89475388-89475407 | None:intergenic | 40.0% |
| ! | TTGTTAGTCTGCTTGATACC+TGG | + | chr3.4:89475957-89475976 | MS.gene054638:intron | 40.0% |
| !! | ATGGCTATAGAGTGCTGATA+TGG | + | chr3.4:89475103-89475122 | MS.gene054638:intron | 40.0% |
| !! | TGATGGAGTTCCTGTTTTTC+AGG | + | chr3.4:89474453-89474472 | MS.gene054638:CDS | 40.0% |
| !!! | CGTTGTTTTAGGTTCGATCA+CGG | + | chr3.4:89473413-89473432 | MS.gene054638:intron | 40.0% |
| ATCAAAACCTTCCTTGCTGG+CGG | - | chr3.4:89474437-89474456 | None:intergenic | 45.0% | |
| ATTCCGGTAGCCCATTAAGT+TGG | - | chr3.4:89475197-89475216 | None:intergenic | 45.0% | |
| CTTCAAAACGAGTTGCAAGG+TGG | - | chr3.4:89473091-89473110 | None:intergenic | 45.0% | |
| GCGAAAGCAAAGCAATCCAA+TGG | - | chr3.4:89473288-89473307 | None:intergenic | 45.0% | |
| GGAACTACTGACGGTGTAAA+CGG | - | chr3.4:89473222-89473241 | None:intergenic | 45.0% | |
| GGACTAATTGGGGAATGTTG+AGG | + | chr3.4:89474513-89474532 | MS.gene054638:intron | 45.0% | |
| GGTGTGACATTCATGGTTGT+AGG | - | chr3.4:89473958-89473977 | None:intergenic | 45.0% | |
| GTTGTTGGAAGTTAAAGCGG+CGG | - | chr3.4:89473174-89473193 | None:intergenic | 45.0% | |
| TCCATCAAAACCTTCCTTGC+TGG | - | chr3.4:89474440-89474459 | None:intergenic | 45.0% | |
| TGCAGATTGGCAGTAAGAGA+GGG | + | chr3.4:89475392-89475411 | MS.gene054638:intron | 45.0% | |
| ! | AATGCACTGGAGGTTAGTTC+CGG | + | chr3.4:89474150-89474169 | MS.gene054638:intron | 45.0% |
| ! | CAAGGTGGTTACAGTGTTGA+TGG | - | chr3.4:89473076-89473095 | None:intergenic | 45.0% |
| ! | GGATGACCAAAAGTGCAGAT+TGG | + | chr3.4:89475379-89475398 | MS.gene054638:intron | 45.0% |
| ! | GTCCTATAGCAGTGTCACTA+TGG | + | chr3.4:89474232-89474251 | MS.gene054638:intron | 45.0% |
| ! | TCCAGGACTTTTAGATACCC+TGG | - | chr3.4:89475543-89475562 | None:intergenic | 45.0% |
| ! | TCCAGGGTATCTAAAAGTCC+TGG | + | chr3.4:89475539-89475558 | MS.gene054638:CDS | 45.0% |
| !! | ACACCAACTTAATGGGCTAC+CGG | + | chr3.4:89475191-89475210 | MS.gene054638:intron | 45.0% |
| !! | GTTGAGAACGGCTTTTTCCA+GGG | - | chr3.4:89476273-89476292 | None:intergenic | 45.0% |
| !! | TGTTGAGAACGGCTTTTTCC+AGG | - | chr3.4:89476274-89476293 | None:intergenic | 45.0% |
| !! | TTGAGAACGGCTTTTTCCAG+GGG | - | chr3.4:89476272-89476291 | None:intergenic | 45.0% |
| ACTACTGACGGTGTAAACGG+AGG | - | chr3.4:89473219-89473238 | None:intergenic | 50.0% | |
| AGAGGAACGTTACCTGAGCA+AGG | - | chr3.4:89473331-89473350 | None:intergenic | 50.0% | |
| ATGCATGATAGTTGCGGCGT+GGG | + | chr3.4:89474315-89474334 | MS.gene054638:intron | 50.0% | |
| ATTGGGGAATGTTGAGGGTG+TGG | + | chr3.4:89474519-89474538 | MS.gene054638:intron | 50.0% | |
| GGAAAGCTTCAGCGTCTTCT+TGG | - | chr3.4:89473310-89473329 | None:intergenic | 50.0% | |
| GGACTTAGCACCTTCAGCAT+CGG | - | chr3.4:89473267-89473286 | None:intergenic | 50.0% | |
| GGCAGTCTCCAGTTCTTTAG+AGG | + | chr3.4:89474492-89474511 | MS.gene054638:intron | 50.0% | |
| GTGCAGATTGGCAGTAAGAG+AGG | + | chr3.4:89475391-89475410 | MS.gene054638:intron | 50.0% | |
| GTTCTGATGTCCGATGCTGA+AGG | + | chr3.4:89473254-89473273 | MS.gene054638:CDS | 50.0% | |
| TATGCATGATAGTTGCGGCG+TGG | + | chr3.4:89474314-89474333 | MS.gene054638:intron | 50.0% | |
| ! | TTGGGGAATGTTGAGGGTGT+GGG | + | chr3.4:89474520-89474539 | MS.gene054638:intron | 50.0% |
| !! | GCCAGCAAGGAAGGTTTTGA+TGG | + | chr3.4:89474436-89474455 | MS.gene054638:CDS | 50.0% |
| !! | GCTGAAGGTGCTAAGTCCAT+TGG | + | chr3.4:89473269-89473288 | MS.gene054638:CDS | 50.0% |
| !! | TGAGAACGGCTTTTTCCAGG+GGG | - | chr3.4:89476271-89476290 | None:intergenic | 50.0% |
| AGTTAAAGCGGCGGCGAAAG+CGG | - | chr3.4:89473165-89473184 | None:intergenic | 55.0% | |
| CGCTGAAGCTTTCCTTGCTC+AGG | + | chr3.4:89473316-89473335 | MS.gene054638:CDS | 55.0% | |
| GACGGTGTAAACGGAGGTTC+CGG | - | chr3.4:89473213-89473232 | None:intergenic | 55.0% | |
| GAGGGATTTGGCGACGTTGT+TGG | - | chr3.4:89473189-89473208 | None:intergenic | 55.0% | |
| AACGTCGCCAAATCCCTCGC+CGG | + | chr3.4:89473191-89473210 | MS.gene054638:CDS | 60.0% | |
| GTAAACGGAGGTTCCGGCGA+GGG | - | chr3.4:89473207-89473226 | None:intergenic | 60.0% | |
| GTTAAAGCGGCGGCGAAAGC+GGG | - | chr3.4:89473164-89473183 | None:intergenic | 60.0% | |
| TGTAAACGGAGGTTCCGGCG+AGG | - | chr3.4:89473208-89473227 | None:intergenic | 60.0% | |
| TTAAAGCGGCGGCGAAAGCG+GGG | - | chr3.4:89473163-89473182 | None:intergenic | 60.0% | |
| ! | GGAATGTTGAGGGTGTGGGC+AGG | + | chr3.4:89474524-89474543 | MS.gene054638:intron | 60.0% |
| CTCAGAGCCGCCAGCAAGGA+AGG | + | chr3.4:89474427-89474446 | MS.gene054638:CDS | 65.0% | |
| GGAGGTTCCGGCGAGGGATT+TGG | - | chr3.4:89473201-89473220 | None:intergenic | 65.0% | |
| TCAGCTCAGAGCCGCCAGCA+AGG | + | chr3.4:89474423-89474442 | MS.gene054638:intron | 65.0% | |
| AGCGGCGGCGAAAGCGGGGT+TGG | - | chr3.4:89473159-89473178 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89473023 | 89476315 | 89473023 | ID=MS.gene054638 |
| chr3.4 | mRNA | 89473023 | 89476315 | 89473023 | ID=MS.gene054638.t1;Parent=MS.gene054638 |
| chr3.4 | exon | 89473023 | 89473337 | 89473023 | ID=MS.gene054638.t1.exon1;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89473023 | 89473337 | 89473023 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89473424 | 89473486 | 89473424 | ID=MS.gene054638.t1.exon2;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89473424 | 89473486 | 89473424 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89474087 | 89474161 | 89474087 | ID=MS.gene054638.t1.exon3;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89474087 | 89474161 | 89474087 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89474427 | 89474474 | 89474427 | ID=MS.gene054638.t1.exon4;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89474427 | 89474474 | 89474427 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89474832 | 89474891 | 89474832 | ID=MS.gene054638.t1.exon5;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89474832 | 89474891 | 89474832 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89475509 | 89475580 | 89475509 | ID=MS.gene054638.t1.exon6;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89475509 | 89475580 | 89475509 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89476098 | 89476133 | 89476098 | ID=MS.gene054638.t1.exon7;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89476098 | 89476133 | 89476098 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| chr3.4 | exon | 89476226 | 89476315 | 89476226 | ID=MS.gene054638.t1.exon8;Parent=MS.gene054638.t1 |
| chr3.4 | CDS | 89476226 | 89476315 | 89476226 | ID=cds.MS.gene054638.t1;Parent=MS.gene054638.t1 |
| Gene Sequence |
| Protein sequence |
