Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56622.t1 | KEH38463.1 | 98.4 | 253 | 3 | 1 | 1 | 253 | 34 | 285 | 2.10E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56622.t1 | Q9C8L4 | 80.5 | 241 | 47 | 0 | 13 | 253 | 51 | 291 | 2.3e-115 | 416.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56622.t1 | A0A072VAN8 | 98.4 | 253 | 3 | 1 | 1 | 253 | 34 | 285 | 1.5e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059043 | MS.gene56622 | 0.80847 | 3.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56622.t1 | MTR_2g072190 | 98.419 | 253 | 3 | 1 | 1 | 253 | 34 | 285 | 0.0 | 512 |
| MS.gene56622.t1 | MTR_2g072190 | 96.875 | 224 | 6 | 1 | 1 | 224 | 34 | 256 | 2.22e-158 | 440 |
| MS.gene56622.t1 | MTR_2g072190 | 96.154 | 208 | 7 | 1 | 1 | 208 | 34 | 240 | 2.48e-144 | 404 |
| MS.gene56622.t1 | MTR_5g068440 | 39.205 | 176 | 91 | 8 | 26 | 196 | 12 | 176 | 5.45e-25 | 100 |
| MS.gene56622.t1 | MTR_5g097770 | 89.130 | 46 | 5 | 0 | 43 | 88 | 105 | 150 | 7.06e-21 | 89.0 |
| MS.gene56622.t1 | MTR_7g118110 | 84.314 | 51 | 8 | 0 | 43 | 93 | 31 | 81 | 1.52e-20 | 89.4 |
| MS.gene56622.t1 | MTR_5g021570 | 89.130 | 46 | 5 | 0 | 43 | 88 | 96 | 141 | 4.26e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56622.t1 | AT1G53580 | 81.435 | 237 | 44 | 0 | 13 | 249 | 51 | 287 | 6.30e-151 | 422 |
| MS.gene56622.t1 | AT1G53580 | 80.321 | 249 | 49 | 0 | 1 | 249 | 39 | 287 | 3.97e-150 | 421 |
| MS.gene56622.t1 | AT3G10850 | 35.795 | 176 | 97 | 8 | 26 | 196 | 12 | 176 | 8.33e-23 | 94.4 |
Find 51 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGCTGTTCCGGCTAATA+TGG | 0.251521 | 2.1:-26795332 | MS.gene56622:CDS |
| GTTGAAAGCTCAGCTTGTTT+TGG | 0.268539 | 2.1:+26795294 | None:intergenic |
| CTTATCACTAATTCAAGAAT+TGG | 0.276956 | 2.1:-26798653 | MS.gene56622:CDS |
| GGCTGCCTTACCTATGTTAC+AGG | 0.288337 | 2.1:-26796569 | MS.gene56622:CDS |
| TTCCGCATCCTCGTATTAAT+AGG | 0.295931 | 2.1:+26796498 | None:intergenic |
| AATGATCGACGTAGCTGTTC+CGG | 0.311682 | 2.1:-26795341 | MS.gene56622:CDS |
| CTATCTACTGTCCTATCAAC+AGG | 0.367153 | 2.1:+26798679 | None:intergenic |
| CAGGGTGATAAAATCCGTTT+TGG | 0.379517 | 2.1:-26797298 | MS.gene56622:CDS |
| AGTTGATTGACCCTGTTGAT+AGG | 0.384510 | 2.1:-26798690 | MS.gene56622:CDS |
| GTACATGCTGATCATGTTAC+TGG | 0.385443 | 2.1:-26798598 | MS.gene56622:CDS |
| AGCAGATCTTTACGTAGAAC+AGG | 0.387438 | 2.1:-26797317 | MS.gene56622:CDS |
| GGATAGAGTAAGGTATCTTT+AGG | 0.405587 | 2.1:+26796083 | None:intergenic |
| TTATGTTAACTTACAACTGC+TGG | 0.424997 | 2.1:+26799053 | None:intergenic |
| TCCGCATCCTCGTATTAATA+GGG | 0.425796 | 2.1:+26796499 | None:intergenic |
| GCTGATCATGTTACTGGAAC+TGG | 0.430726 | 2.1:-26798592 | MS.gene56622:CDS |
| TTATCACTAATTCAAGAATT+GGG | 0.439124 | 2.1:-26798652 | MS.gene56622:CDS |
| GTGAATGCCATTCGAGGTTG+AGG | 0.467892 | 2.1:+26796530 | None:intergenic |
| AAGTCCATCTCCTGTAACAT+AGG | 0.473411 | 2.1:+26796559 | None:intergenic |
| GTTCCGGCTAATATGGTTTG+TGG | 0.474543 | 2.1:-26795325 | MS.gene56622:CDS |
| GTTAAGTTCATGCCTGTGAA+TGG | 0.493071 | 2.1:+26796266 | None:intergenic |
| CTGTAGGTTCGTGCAACTCC+CGG | 0.506230 | 2.1:-26796602 | MS.gene56622:intron |
| TCGTATTAATAGGGTATCTC+CGG | 0.511648 | 2.1:+26796508 | None:intergenic |
| GTCATGAGCTGGATAGAGTA+AGG | 0.518190 | 2.1:+26796073 | None:intergenic |
| AATCCTTTGTAGTCATGAGC+TGG | 0.527077 | 2.1:+26796062 | None:intergenic |
| GCAACTCCCGGTCATACCTT+AGG | 0.541120 | 2.1:-26796590 | MS.gene56622:CDS |
| TTACAAATCAATCCATTCAC+AGG | 0.542884 | 2.1:-26796278 | MS.gene56622:intron |
| AAGGCAGCCTAAGGTATGAC+CGG | 0.550723 | 2.1:+26796583 | None:intergenic |
| TTAGTTAAGCACAGTTGGAG+AGG | 0.554337 | 2.1:-26795963 | MS.gene56622:intron |
| CTTACCTATGTTACAGGAGA+TGG | 0.556156 | 2.1:-26796563 | MS.gene56622:CDS |
| TGACCAACCTCAACCTCGAA+TGG | 0.562289 | 2.1:-26796537 | MS.gene56622:CDS |
| TACTGGAACTGGCCTCATCA+AGG | 0.563271 | 2.1:-26798581 | MS.gene56622:intron |
| ACCTCATCCTTTGTTAAGCG+CGG | 0.563453 | 2.1:+26795926 | None:intergenic |
| TCTGTTATTTCAAAAGCAAG+TGG | 0.564924 | 2.1:-26797346 | MS.gene56622:CDS |
| CATCTCCTGTAACATAGGTA+AGG | 0.569527 | 2.1:+26796564 | None:intergenic |
| TCTCCGGTGAATGCCATTCG+AGG | 0.574709 | 2.1:+26796524 | None:intergenic |
| ATTCCACAAACCATATTAGC+CGG | 0.584369 | 2.1:+26795322 | None:intergenic |
| AACATAGGTAAGGCAGCCTA+AGG | 0.584498 | 2.1:+26796574 | None:intergenic |
| TCCGCGCTTAACAAAGGATG+AGG | 0.590157 | 2.1:-26795927 | MS.gene56622:intron |
| ACCCTATTAATACGAGGATG+CGG | 0.592116 | 2.1:-26796500 | MS.gene56622:CDS |
| ATGCCATTCGAGGTTGAGGT+TGG | 0.592927 | 2.1:+26796534 | None:intergenic |
| CATGTGAAGCATCAGCAAGA+AGG | 0.595346 | 2.1:+26799084 | None:intergenic |
| CAACCTCGAATGGCATTCAC+CGG | 0.598711 | 2.1:-26796527 | MS.gene56622:CDS |
| GTATAATCCGCGCTTAACAA+AGG | 0.606464 | 2.1:-26795933 | MS.gene56622:CDS |
| GGAAACTTTCAAGAACATCA+TGG | 0.608737 | 2.1:-26795525 | MS.gene56622:CDS |
| TATTAATACGAGGATGCGGA+AGG | 0.641416 | 2.1:-26796496 | MS.gene56622:CDS |
| AGGCAGCCTAAGGTATGACC+GGG | 0.647739 | 2.1:+26796584 | None:intergenic |
| TATCCAGCTCATGACTACAA+AGG | 0.655933 | 2.1:-26796065 | MS.gene56622:CDS |
| GCATTCTACATACCTTGATG+AGG | 0.664282 | 2.1:+26798569 | None:intergenic |
| TATCTACTGTCCTATCAACA+GGG | 0.703833 | 2.1:+26798680 | None:intergenic |
| GCAGATCTTTACGTAGAACA+GGG | 0.726906 | 2.1:-26797316 | MS.gene56622:CDS |
| GGAGATACCCTATTAATACG+AGG | 0.765090 | 2.1:-26796506 | MS.gene56622:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATATAATTGACA+AGG | + | chr2.1:26799004-26799023 | None:intergenic | 10.0% |
| !! | AACAAACTCTATATAAATTA+AGG | - | chr2.1:26796456-26796475 | MS.gene56622:intron | 15.0% |
| !! | ACAAACTCTATATAAATTAA+GGG | - | chr2.1:26796457-26796476 | MS.gene56622:intron | 15.0% |
| !! | AGATTAATCTTAAACTTATA+CGG | - | chr2.1:26797625-26797644 | MS.gene56622:intron | 15.0% |
| !! | TAAAAAATTGCTTCTTTATT+GGG | - | chr2.1:26797344-26797363 | MS.gene56622:CDS | 15.0% |
| !! | TAAAACAATAATTTACTATC+AGG | + | chr2.1:26795931-26795950 | None:intergenic | 15.0% |
| !! | TATATAACTCAATAAAATAG+AGG | + | chr2.1:26798068-26798087 | None:intergenic | 15.0% |
| !! | TGGAAAAAATAAATTAATCT+AGG | + | chr2.1:26797236-26797255 | None:intergenic | 15.0% |
| !! | TTAAAAAATTGCTTCTTTAT+TGG | - | chr2.1:26797343-26797362 | MS.gene56622:CDS | 15.0% |
| !!! | CTATTTTATTGAGTTATATA+AGG | - | chr2.1:26798068-26798087 | MS.gene56622:intron | 15.0% |
| !!! | GCTATTTTTATAAGATATAT+TGG | - | chr2.1:26796313-26796332 | MS.gene56622:intron | 15.0% |
| !!! | TAAAATTGATAACAAGAATA+AGG | + | chr2.1:26797734-26797753 | None:intergenic | 15.0% |
| !!! | TAATTTATATAGAGTTTGTT+TGG | + | chr2.1:26796456-26796475 | None:intergenic | 15.0% |
| !!! | TATTTGTTGAATTGAATAAT+GGG | - | chr2.1:26795629-26795648 | MS.gene56622:intron | 15.0% |
| !!! | TATTTTTTGAATTTGATGAT+GGG | - | chr2.1:26795503-26795522 | MS.gene56622:intron | 15.0% |
| !!! | TTATCAATTTTAGATGAAAT+GGG | - | chr2.1:26797742-26797761 | MS.gene56622:intron | 15.0% |
| !!! | TTATTTGTTGAATTGAATAA+TGG | - | chr2.1:26795628-26795647 | MS.gene56622:intron | 15.0% |
| !!! | TTATTTTTTGAATTTGATGA+TGG | - | chr2.1:26795502-26795521 | MS.gene56622:intron | 15.0% |
| !!! | TTTTTCACAATTTAAGTTTA+AGG | + | chr2.1:26796240-26796259 | None:intergenic | 15.0% |
| !! | AAAAAATTGCTTCTTTATTG+GGG | - | chr2.1:26797345-26797364 | MS.gene56622:CDS | 20.0% |
| !! | AAAATAGATGAAGAAATTTC+TGG | - | chr2.1:26798299-26798318 | MS.gene56622:intron | 20.0% |
| !! | AGAAAAGTAATGTAACATAT+TGG | + | chr2.1:26797040-26797059 | None:intergenic | 20.0% |
| !! | ATAGACAACAATAAAATGTA+GGG | + | chr2.1:26797398-26797417 | None:intergenic | 20.0% |
| !! | ATATATAATTGACAAGGTTT+AGG | + | chr2.1:26798998-26799017 | None:intergenic | 20.0% |
| !! | TATAGACAACAATAAAATGT+AGG | + | chr2.1:26797399-26797418 | None:intergenic | 20.0% |
| !! | TGATGAAATATAATTAAACG+CGG | - | chr2.1:26797514-26797533 | MS.gene56622:intron | 20.0% |
| !! | TGGATTAAGCATATAAATTA+TGG | + | chr2.1:26798588-26798607 | None:intergenic | 20.0% |
| !! | TTATCACTAATTCAAGAATT+GGG | - | chr2.1:26795821-26795840 | MS.gene56622:intron | 20.0% |
| !!! | CTATTTTCTTAGATTTTTGT+TGG | - | chr2.1:26796940-26796959 | MS.gene56622:intron | 20.0% |
| !!! | GTTATCAATTTTAGATGAAA+TGG | - | chr2.1:26797741-26797760 | MS.gene56622:intron | 20.0% |
| !!! | TGTATTTATTGACTGAAAAT+GGG | - | chr2.1:26796620-26796639 | MS.gene56622:intron | 20.0% |
| ! | AAATAGATAGAAGCTATGAT+AGG | + | chr2.1:26796926-26796945 | None:intergenic | 25.0% |
| ! | AGAATAAAGTGACTAAACAA+AGG | + | chr2.1:26796997-26797016 | None:intergenic | 25.0% |
| ! | AGGGATATTCTGTTATAAAA+GGG | + | chr2.1:26796782-26796801 | None:intergenic | 25.0% |
| ! | ATATGAGATATTACTGAGTT+TGG | + | chr2.1:26798902-26798921 | None:intergenic | 25.0% |
| ! | ATATTCTGTTATAAAAGGGA+GGG | + | chr2.1:26796778-26796797 | None:intergenic | 25.0% |
| ! | ATCGAAATAGCTTAAAGAAA+TGG | - | chr2.1:26796270-26796289 | MS.gene56622:intron | 25.0% |
| ! | ATTCACATCAATTATTATGC+AGG | - | chr2.1:26798153-26798172 | MS.gene56622:intron | 25.0% |
| ! | CTTATCACTAATTCAAGAAT+TGG | - | chr2.1:26795820-26795839 | MS.gene56622:intron | 25.0% |
| ! | GTCAACAAAATTCTATCATT+AGG | - | chr2.1:26797484-26797503 | MS.gene56622:intron | 25.0% |
| ! | GTGTGAATGTTTAATGTTAA+CGG | - | chr2.1:26797803-26797822 | MS.gene56622:intron | 25.0% |
| ! | TATGAGATATTACTGAGTTT+GGG | + | chr2.1:26798901-26798920 | None:intergenic | 25.0% |
| ! | TCATCACGAAGTTTATTTAT+TGG | - | chr2.1:26798124-26798143 | MS.gene56622:intron | 25.0% |
| ! | TGAAATGAAGTTGTCATAAT+AGG | - | chr2.1:26796027-26796046 | MS.gene56622:intron | 25.0% |
| ! | TGATGAAGTTACAAAATATC+CGG | + | chr2.1:26798110-26798129 | None:intergenic | 25.0% |
| ! | TTATGAAAATAAGCCGAAAA+AGG | - | chr2.1:26796341-26796360 | MS.gene56622:intron | 25.0% |
| ! | TTCACATCAATTATTATGCA+GGG | - | chr2.1:26798154-26798173 | MS.gene56622:intron | 25.0% |
| !! | ATTACTCTTTCACATTTTTC+TGG | - | chr2.1:26798349-26798368 | MS.gene56622:intron | 25.0% |
| !! | ATTTGTGCGAAATTTTTATC+TGG | - | chr2.1:26795472-26795491 | MS.gene56622:intron | 25.0% |
| !! | CAATTTTCACAAACCTTTTT+CGG | + | chr2.1:26796357-26796376 | None:intergenic | 25.0% |
| !! | GAAATAACAGATTTTACATC+AGG | + | chr2.1:26797118-26797137 | None:intergenic | 25.0% |
| !! | GTGAAAAAAGTGATTTTGAA+GGG | - | chr2.1:26795564-26795583 | MS.gene56622:intron | 25.0% |
| !! | GTGTATTTATTGACTGAAAA+TGG | - | chr2.1:26796619-26796638 | MS.gene56622:intron | 25.0% |
| !! | TGTGAAAAAAGTGATTTTGA+AGG | - | chr2.1:26795563-26795582 | MS.gene56622:intron | 25.0% |
| !! | TTTGTGCGAAATTTTTATCT+GGG | - | chr2.1:26795473-26795492 | MS.gene56622:intron | 25.0% |
| !!! | AGCATGTTAAAACGATTTTT+TGG | + | chr2.1:26798852-26798871 | None:intergenic | 25.0% |
| !!! | ATCTTATTTTCTCTTGTGAT+GGG | - | chr2.1:26797781-26797800 | MS.gene56622:intron | 25.0% |
| !!! | GAAAGTAGAACTTTTAATTG+TGG | - | chr2.1:26798623-26798642 | MS.gene56622:CDS | 25.0% |
| !!! | GAATTTTGTTATGCTATATC+TGG | + | chr2.1:26798693-26798712 | None:intergenic | 25.0% |
| !!! | TATAAGCTATTTTGATGACA+TGG | - | chr2.1:26796203-26796222 | MS.gene56622:intron | 25.0% |
| !!! | TATGTTACATTACTTTTCTG+TGG | - | chr2.1:26797041-26797060 | MS.gene56622:intron | 25.0% |
| !!! | TGTTTTAAACTTTACTCTGA+AGG | - | chr2.1:26795944-26795963 | MS.gene56622:CDS | 25.0% |
| !!! | TTATTTTAGTTAAGCACAGT+TGG | - | chr2.1:26798505-26798524 | MS.gene56622:intron | 25.0% |
| !!! | TTCAGTTGTTTTGATGATTT+TGG | - | chr2.1:26795697-26795716 | MS.gene56622:intron | 25.0% |
| AAAGTTTGATAGAGACAGTT+AGG | + | chr2.1:26796736-26796755 | None:intergenic | 30.0% | |
| AAGGACAAATGTAATCATCA+AGG | + | chr2.1:26796120-26796139 | None:intergenic | 30.0% | |
| ATCTTAAACTTATACGGTGA+TGG | - | chr2.1:26797631-26797650 | MS.gene56622:intron | 30.0% | |
| ATTATTGTCTTCATTGCTGT+AGG | - | chr2.1:26797855-26797874 | MS.gene56622:intron | 30.0% | |
| CATTACAAAACAAAGCTAAG+TGG | + | chr2.1:26797256-26797275 | None:intergenic | 30.0% | |
| CCTTACATTACAACAACTTA+AGG | + | chr2.1:26796139-26796158 | None:intergenic | 30.0% | |
| CTAGAAAAAGATCACCAAAA+CGG | + | chr2.1:26797192-26797211 | None:intergenic | 30.0% | |
| CTTGTGCAAAAAAATGGAAT+GGG | - | chr2.1:26797685-26797704 | MS.gene56622:intron | 30.0% | |
| CTTTCATAAGTTTCGTTTAG+TGG | + | chr2.1:26798608-26798627 | None:intergenic | 30.0% | |
| GAAGAAGCTATATTTATGCT+TGG | - | chr2.1:26797422-26797441 | MS.gene56622:intron | 30.0% | |
| GAATATCCCTCATAAAAATC+AGG | - | chr2.1:26796792-26796811 | MS.gene56622:intron | 30.0% | |
| GAGGGATATTCTGTTATAAA+AGG | + | chr2.1:26796783-26796802 | None:intergenic | 30.0% | |
| GATATTCTGTTATAAAAGGG+AGG | + | chr2.1:26796779-26796798 | None:intergenic | 30.0% | |
| GTAAACCTTGTGCAAAAAAA+TGG | - | chr2.1:26797679-26797698 | MS.gene56622:intron | 30.0% | |
| GTTTAACATTCCAGTCAAAA+AGG | + | chr2.1:26798268-26798287 | None:intergenic | 30.0% | |
| TATCAAGTTCTTGAAGACTT+CGG | + | chr2.1:26796572-26796591 | None:intergenic | 30.0% | |
| TTACAAATCAATCCATTCAC+AGG | - | chr2.1:26798195-26798214 | MS.gene56622:intron | 30.0% | |
| TTATGTTAACTTACAACTGC+TGG | + | chr2.1:26795423-26795442 | None:intergenic | 30.0% | |
| ! | AGGAAACCTTTTATGGTTTT+TGG | - | chr2.1:26798441-26798460 | MS.gene56622:intron | 30.0% |
| ! | ATTAAGGGTGTATATATGCT+TGG | - | chr2.1:26796472-26796491 | MS.gene56622:intron | 30.0% |
| ! | ATTTGTGGGAAATTTTTACG+TGG | - | chr2.1:26795598-26795617 | MS.gene56622:intron | 30.0% |
| ! | CATTCTCCTGATTTTTATGA+GGG | + | chr2.1:26796801-26796820 | None:intergenic | 30.0% |
| ! | CCTTAAGTTGTTGTAATGTA+AGG | - | chr2.1:26796136-26796155 | MS.gene56622:intron | 30.0% |
| ! | TTTGTGGGAAATTTTTACGT+GGG | - | chr2.1:26795599-26795618 | MS.gene56622:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr2.1:26796405-26796424 | None:intergenic | 30.0% |
| !! | TCTGTTATTTCAAAAGCAAG+TGG | - | chr2.1:26797127-26797146 | MS.gene56622:intron | 30.0% |
| !! | TTTGACTCGTCTATTTTATG+TGG | - | chr2.1:26799060-26799079 | MS.gene56622:intron | 30.0% |
| !! | TTTTGGTGATCTTTTTCTAG+AGG | - | chr2.1:26797192-26797211 | MS.gene56622:intron | 30.0% |
| !!! | ATGATGGGTTTCTTCTATTT+TGG | - | chr2.1:26795518-26795537 | MS.gene56622:intron | 30.0% |
| !!! | CAACTTTTTTCCTTTTTGAC+TGG | - | chr2.1:26798255-26798274 | MS.gene56622:intron | 30.0% |
| !!! | GATCTTATTTTCTCTTGTGA+TGG | - | chr2.1:26797780-26797799 | MS.gene56622:intron | 30.0% |
| !!! | TGTTAAAACGATTTTTTGGC+TGG | + | chr2.1:26798848-26798867 | None:intergenic | 30.0% |
| AAATGGGAAATTCGTGCAAA+TGG | - | chr2.1:26797758-26797777 | MS.gene56622:intron | 35.0% | |
| AAGTTGTGTGTGTATGTGTT+GGG | - | chr2.1:26796861-26796880 | MS.gene56622:intron | 35.0% | |
| AATTGCTTCTTTATTGGGGT+TGG | - | chr2.1:26797349-26797368 | MS.gene56622:CDS | 35.0% | |
| ACATCAATTATTATGCAGGG+TGG | - | chr2.1:26798157-26798176 | MS.gene56622:intron | 35.0% | |
| ACTACAAAGGATTCTCTGTA+AGG | - | chr2.1:26798421-26798440 | MS.gene56622:intron | 35.0% | |
| AGGGTCTGTTTGATTATTTG+TGG | - | chr2.1:26795583-26795602 | MS.gene56622:intron | 35.0% | |
| ATACACACACAACTTCTAGA+AGG | + | chr2.1:26796856-26796875 | None:intergenic | 35.0% | |
| ATTCCACAAACCATATTAGC+CGG | + | chr2.1:26799154-26799173 | None:intergenic | 35.0% | |
| CATCAATTATTATGCAGGGT+GGG | - | chr2.1:26798158-26798177 | MS.gene56622:intron | 35.0% | |
| CCTCATAAAAATCAGGAGAA+TGG | - | chr2.1:26796799-26796818 | MS.gene56622:intron | 35.0% | |
| CCTTGTGCAAAAAAATGGAA+TGG | - | chr2.1:26797684-26797703 | MS.gene56622:intron | 35.0% | |
| GAAACGAGAATTTAGACTTC+TGG | - | chr2.1:26796592-26796611 | MS.gene56622:CDS | 35.0% | |
| GGAAACTTTCAAGAACATCA+TGG | - | chr2.1:26798948-26798967 | MS.gene56622:intron | 35.0% | |
| GGAATGTTAAACAGCAACTT+AGG | - | chr2.1:26798276-26798295 | MS.gene56622:intron | 35.0% | |
| GGGTCTGTTTGATTATTTGT+GGG | - | chr2.1:26795584-26795603 | MS.gene56622:intron | 35.0% | |
| TATCTACTGTCCTATCAACA+GGG | + | chr2.1:26795796-26795815 | None:intergenic | 35.0% | |
| TTTCACAATTTCTGTGAAGC+TGG | + | chr2.1:26796072-26796091 | None:intergenic | 35.0% | |
| ! | AATCTGATTAGTCAAGCAGA+TGG | - | chr2.1:26797575-26797594 | MS.gene56622:intron | 35.0% |
| ! | AATGTTAATCGCTCTTTTGC+AGG | - | chr2.1:26798927-26798946 | MS.gene56622:intron | 35.0% |
| ! | CCATTCTCCTGATTTTTATG+AGG | + | chr2.1:26796802-26796821 | None:intergenic | 35.0% |
| ! | CTCTGTAAGGAAACCTTTTA+TGG | - | chr2.1:26798434-26798453 | MS.gene56622:intron | 35.0% |
| ! | GGATAGAGTAAGGTATCTTT+AGG | + | chr2.1:26798393-26798412 | None:intergenic | 35.0% |
| ! | TCGTATTAATAGGGTATCTC+CGG | + | chr2.1:26797968-26797987 | None:intergenic | 35.0% |
| ! | TCGTCTATTTTATGTGGTGA+TGG | - | chr2.1:26799066-26799085 | MS.gene56622:intron | 35.0% |
| ! | TGCGAAATTTTTATCTGGGT+CGG | - | chr2.1:26795477-26795496 | MS.gene56622:intron | 35.0% |
| ! | TTGTTGGTGTCTAAGAATCA+CGG | - | chr2.1:26796956-26796975 | MS.gene56622:intron | 35.0% |
| !! | GTTACATTACTTTTCTGTGG+TGG | - | chr2.1:26797044-26797063 | MS.gene56622:intron | 35.0% |
| !! | GTTTCGTCAGCTTTTTGAAA+AGG | - | chr2.1:26795347-26795366 | MS.gene56622:CDS | 35.0% |
| !!! | CCATTCCATTTTTTTGCACA+AGG | + | chr2.1:26797687-26797706 | None:intergenic | 35.0% |
| AAGTCCATCTCCTGTAACAT+AGG | + | chr2.1:26797917-26797936 | None:intergenic | 40.0% | |
| AATCCTTTGTAGTCATGAGC+TGG | + | chr2.1:26798414-26798433 | None:intergenic | 40.0% | |
| ACAAGAACACTGACACATGT+AGG | + | chr2.1:26796534-26796553 | None:intergenic | 40.0% | |
| ACCCTATTAATACGAGGATG+CGG | - | chr2.1:26797973-26797992 | MS.gene56622:intron | 40.0% | |
| AGCAGATCTTTACGTAGAAC+AGG | - | chr2.1:26797156-26797175 | MS.gene56622:intron | 40.0% | |
| AGTTGATTGACCCTGTTGAT+AGG | - | chr2.1:26795783-26795802 | MS.gene56622:intron | 40.0% | |
| CATCTCCTGTAACATAGGTA+AGG | + | chr2.1:26797912-26797931 | None:intergenic | 40.0% | |
| CGGCAACCAAAAACCATAAA+AGG | + | chr2.1:26798450-26798469 | None:intergenic | 40.0% | |
| CTATCTACTGTCCTATCAAC+AGG | + | chr2.1:26795797-26795816 | None:intergenic | 40.0% | |
| CTCTTTGCACTAACAGTGTA+TGG | + | chr2.1:26798737-26798756 | None:intergenic | 40.0% | |
| CTTACCTATGTTACAGGAGA+TGG | - | chr2.1:26797910-26797929 | MS.gene56622:intron | 40.0% | |
| GAAGCTATGATAGGATGTCA+AGG | + | chr2.1:26796917-26796936 | None:intergenic | 40.0% | |
| GAAGTTGTGTGTGTATGTGT+TGG | - | chr2.1:26796860-26796879 | MS.gene56622:intron | 40.0% | |
| GCAGATCTTTACGTAGAACA+GGG | - | chr2.1:26797157-26797176 | MS.gene56622:intron | 40.0% | |
| GCATTCTACATACCTTGATG+AGG | + | chr2.1:26795907-26795926 | None:intergenic | 40.0% | |
| GGAGATACCCTATTAATACG+AGG | - | chr2.1:26797967-26797986 | MS.gene56622:intron | 40.0% | |
| GTACATGCTGATCATGTTAC+TGG | - | chr2.1:26795875-26795894 | MS.gene56622:intron | 40.0% | |
| GTATAATCCGCGCTTAACAA+AGG | - | chr2.1:26798540-26798559 | MS.gene56622:intron | 40.0% | |
| GTTAAGTTCATGCCTGTGAA+TGG | + | chr2.1:26798210-26798229 | None:intergenic | 40.0% | |
| TAATCTAGGCATGAAACTGC+AGG | + | chr2.1:26797222-26797241 | None:intergenic | 40.0% | |
| TATCCAGCTCATGACTACAA+AGG | - | chr2.1:26798408-26798427 | MS.gene56622:intron | 40.0% | |
| TATCCGGTAAGAGTGAAACT+CGG | + | chr2.1:26798094-26798113 | None:intergenic | 40.0% | |
| TATTAATACGAGGATGCGGA+AGG | - | chr2.1:26797977-26797996 | MS.gene56622:intron | 40.0% | |
| TCCGCATCCTCGTATTAATA+GGG | + | chr2.1:26797977-26797996 | None:intergenic | 40.0% | |
| TGAGTTTCTGTTTCATCTGC+TGG | - | chr2.1:26798871-26798890 | MS.gene56622:intron | 40.0% | |
| TGTAATGTCTGTGTGTGTGT+CGG | - | chr2.1:26798019-26798038 | MS.gene56622:intron | 40.0% | |
| TTAGTTAAGCACAGTTGGAG+AGG | - | chr2.1:26798510-26798529 | MS.gene56622:intron | 40.0% | |
| TTCCGCATCCTCGTATTAAT+AGG | + | chr2.1:26797978-26797997 | None:intergenic | 40.0% | |
| ! | ACAGCTACGTCGATCATTTT+TGG | + | chr2.1:26799130-26799149 | None:intergenic | 40.0% |
| ! | CAGGGTGATAAAATCCGTTT+TGG | - | chr2.1:26797175-26797194 | MS.gene56622:intron | 40.0% |
| ! | GTATATATGCTTGGTAGCAC+TGG | - | chr2.1:26796481-26796500 | MS.gene56622:intron | 40.0% |
| ! | TGGGAAATTTTTACGTGGGT+CGG | - | chr2.1:26795603-26795622 | MS.gene56622:intron | 40.0% |
| ! | TTTGATGACATGGCTAGGAT+AGG | - | chr2.1:26796213-26796232 | MS.gene56622:intron | 40.0% |
| !! | TTTATTGGGGTTGGTTGACA+AGG | - | chr2.1:26797358-26797377 | MS.gene56622:CDS | 40.0% |
| !!! | GCTATTTTGATGACATGGCT+AGG | - | chr2.1:26796208-26796227 | MS.gene56622:intron | 40.0% |
| AACATAGGTAAGGCAGCCTA+AGG | + | chr2.1:26797902-26797921 | None:intergenic | 45.0% | |
| AATGATCGACGTAGCTGTTC+CGG | - | chr2.1:26799132-26799151 | MS.gene56622:CDS | 45.0% | |
| ACCTCATCCTTTGTTAAGCG+CGG | + | chr2.1:26798550-26798569 | None:intergenic | 45.0% | |
| AGCAGTATTGCTCCTAAACC+AGG | - | chr2.1:26796700-26796719 | MS.gene56622:intron | 45.0% | |
| GCAGTATTGCTCCTAAACCA+GGG | - | chr2.1:26796701-26796720 | MS.gene56622:intron | 45.0% | |
| GCTGATCATGTTACTGGAAC+TGG | - | chr2.1:26795881-26795900 | MS.gene56622:intron | 45.0% | |
| GGTTACACCATTGTCAATCG+CGG | + | chr2.1:26798827-26798846 | None:intergenic | 45.0% | |
| GGTTGGGTCATCACATGTAT+TGG | - | chr2.1:26796890-26796909 | MS.gene56622:intron | 45.0% | |
| GTCATGAGCTGGATAGAGTA+AGG | + | chr2.1:26798403-26798422 | None:intergenic | 45.0% | |
| GTGTGAGAGTTCTTGAACTC+TGG | + | chr2.1:26796677-26796696 | None:intergenic | 45.0% | |
| GTTCCGGCTAATATGGTTTG+TGG | - | chr2.1:26799148-26799167 | MS.gene56622:CDS | 45.0% | |
| GTTTAGGAGCAATACTGCTC+TGG | + | chr2.1:26796699-26796718 | None:intergenic | 45.0% | |
| TAGAAGGTTGCAGAAGCAGA+GGG | + | chr2.1:26796840-26796859 | None:intergenic | 45.0% | |
| TCTGTGGTGGTAACTCAGTT+TGG | - | chr2.1:26797057-26797076 | MS.gene56622:intron | 45.0% | |
| TTAATTGTGGCGAGAGACTC+TGG | - | chr2.1:26798636-26798655 | MS.gene56622:CDS | 45.0% | |
| ! | ATGCGGAAGGACAGATTTTC+AGG | - | chr2.1:26797990-26798009 | MS.gene56622:intron | 45.0% |
| ! | CATGTGAAGCATCAGCAAGA+AGG | + | chr2.1:26795392-26795411 | None:intergenic | 45.0% |
| !! | AAAATAAACTATATAAATTT+CGG | + | chr2.1:26798470-26798489 | None:intergenic | 5.0% |
| AAGGCAGCCTAAGGTATGAC+CGG | + | chr2.1:26797893-26797912 | None:intergenic | 50.0% | |
| AGGCCGAGTTTCACTCTTAC+CGG | - | chr2.1:26798088-26798107 | MS.gene56622:intron | 50.0% | |
| ATGCCATTCGAGGTTGAGGT+TGG | + | chr2.1:26797942-26797961 | None:intergenic | 50.0% | |
| ATGTGTTGGGCGAGATGGTT+GGG | - | chr2.1:26796874-26796893 | MS.gene56622:intron | 50.0% | |
| CAACCTCGAATGGCATTCAC+CGG | - | chr2.1:26797946-26797965 | MS.gene56622:intron | 50.0% | |
| CAGTTAGGACAGATTCTCCC+TGG | + | chr2.1:26796721-26796740 | None:intergenic | 50.0% | |
| CGTAGCTGTTCCGGCTAATA+TGG | - | chr2.1:26799141-26799160 | MS.gene56622:CDS | 50.0% | |
| CTAGAAGGTTGCAGAAGCAG+AGG | + | chr2.1:26796841-26796860 | None:intergenic | 50.0% | |
| GCTGTAGCGCTGTAGCATAA+TGG | - | chr2.1:26798772-26798791 | MS.gene56622:intron | 50.0% | |
| GGACAGATTCTCCCTGGTTT+AGG | + | chr2.1:26796715-26796734 | None:intergenic | 50.0% | |
| GGCTGCCTTACCTATGTTAC+AGG | - | chr2.1:26797904-26797923 | MS.gene56622:intron | 50.0% | |
| GTGAATGCCATTCGAGGTTG+AGG | + | chr2.1:26797946-26797965 | None:intergenic | 50.0% | |
| GTTCTTGAAGACTTCGGACG+CGG | + | chr2.1:26796566-26796585 | None:intergenic | 50.0% | |
| GTTGCAGAAGCAGAGGGAAT+AGG | + | chr2.1:26796834-26796853 | None:intergenic | 50.0% | |
| TATGTGTTGGGCGAGATGGT+TGG | - | chr2.1:26796873-26796892 | MS.gene56622:intron | 50.0% | |
| TCCGCGCTTAACAAAGGATG+AGG | - | chr2.1:26798546-26798565 | MS.gene56622:intron | 50.0% | |
| TCGTGATCCGCGATTGACAA+TGG | - | chr2.1:26798817-26798836 | MS.gene56622:intron | 50.0% | |
| TGACCAACCTCAACCTCGAA+TGG | - | chr2.1:26797936-26797955 | MS.gene56622:intron | 50.0% | |
| TGTGTATGTGTTGGGCGAGA+TGG | - | chr2.1:26796869-26796888 | MS.gene56622:intron | 50.0% | |
| ! | TACTGGAACTGGCCTCATCA+AGG | - | chr2.1:26795892-26795911 | MS.gene56622:intron | 50.0% |
| !! | AAGAATCACGGTGTTGCGCA+TGG | - | chr2.1:26796968-26796987 | MS.gene56622:intron | 50.0% |
| AGGCAGCCTAAGGTATGACC+GGG | + | chr2.1:26797892-26797911 | None:intergenic | 55.0% | |
| CTGTAGGTTCGTGCAACTCC+CGG | - | chr2.1:26797871-26797890 | MS.gene56622:intron | 55.0% | |
| GCAACTCCCGGTCATACCTT+AGG | - | chr2.1:26797883-26797902 | MS.gene56622:intron | 55.0% | |
| TCTCCGGTGAATGCCATTCG+AGG | + | chr2.1:26797952-26797971 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 26795303 | 26799192 | 26795303 | ID=MS.gene56622 |
| chr2.1 | mRNA | 26795303 | 26799192 | 26795303 | ID=MS.gene56622.t1;Parent=MS.gene56622 |
| chr2.1 | exon | 26799067 | 26799192 | 26799067 | ID=MS.gene56622.t1.exon1;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26799067 | 26799192 | 26799067 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26798582 | 26798710 | 26798582 | ID=MS.gene56622.t1.exon2;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26798582 | 26798710 | 26798582 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26797282 | 26797389 | 26797282 | ID=MS.gene56622.t1.exon3;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26797282 | 26797389 | 26797282 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26796484 | 26796618 | 26796484 | ID=MS.gene56622.t1.exon4;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26796484 | 26796618 | 26796484 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26796279 | 26796320 | 26796279 | ID=MS.gene56622.t1.exon5;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26796279 | 26796320 | 26796279 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26796058 | 26796117 | 26796058 | ID=MS.gene56622.t1.exon6;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26796058 | 26796117 | 26796058 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26795928 | 26795981 | 26795928 | ID=MS.gene56622.t1.exon7;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26795928 | 26795981 | 26795928 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26795522 | 26795546 | 26795522 | ID=MS.gene56622.t1.exon8;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26795522 | 26795546 | 26795522 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| chr2.1 | exon | 26795303 | 26795385 | 26795303 | ID=MS.gene56622.t1.exon9;Parent=MS.gene56622.t1 |
| chr2.1 | CDS | 26795303 | 26795385 | 26795303 | ID=cds.MS.gene56622.t1;Parent=MS.gene56622.t1 |
| Gene Sequence |
| Protein sequence |
