Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56683.t1 | AES99530.2 | 87.2 | 211 | 5 | 1 | 1 | 211 | 1 | 189 | 5.00E-91 | 344 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56683.t1 | P58684 | 69.4 | 209 | 36 | 2 | 4 | 211 | 11 | 192 | 1.5e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56683.t1 | G7KBX4 | 87.2 | 211 | 5 | 1 | 1 | 211 | 1 | 189 | 3.6e-91 | 344.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056075 | MS.gene56683 | 0.821879 | 3.19E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene56683 | 0.808805 | 2.59E-50 | -1.69E-46 |
| MS.gene059227 | MS.gene56683 | 0.800004 | 1.77E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56683.t1 | MTR_5g081900 | 87.204 | 211 | 5 | 1 | 1 | 211 | 1 | 189 | 3.71e-129 | 361 |
| MS.gene56683.t1 | MTR_8g093950 | 85.714 | 42 | 5 | 1 | 33 | 74 | 39 | 79 | 1.64e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56683.t1 | AT2G39960 | 69.048 | 210 | 37 | 2 | 3 | 211 | 10 | 192 | 1.27e-99 | 287 |
| MS.gene56683.t1 | AT4G04200 | 61.321 | 212 | 50 | 3 | 2 | 211 | 9 | 190 | 2.99e-85 | 250 |
Find 43 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGAAAATCTGGGTAATT+TGG | 0.222649 | 5.1:+63988138 | None:intergenic |
| TCGTTTGCAGAAACTGATTT+TGG | 0.230960 | 5.1:+63988085 | None:intergenic |
| CGTATACATGTCAGAAAATC+TGG | 0.239995 | 5.1:+63988129 | None:intergenic |
| CCATATCACTTGCTCTTCTT+TGG | 0.240424 | 5.1:+63987818 | None:intergenic |
| TCTTGGTTGAGGGCCTCTTC+TGG | 0.250821 | 5.1:-63987880 | MS.gene56683:CDS |
| ATACCACTGGGTAACACTTT+TGG | 0.331383 | 5.1:+63988048 | None:intergenic |
| ATGTGAAATTGAGCAATATT+AGG | 0.331788 | 5.1:-63990380 | MS.gene56683:CDS |
| ATTCGCTTTCTTCTGTCCTT+TGG | 0.333788 | 5.1:+63990598 | None:intergenic |
| AAAGGTAAGGAAAGGATATA+AGG | 0.355380 | 5.1:+63990260 | None:intergenic |
| ACACACAGTGAATAAATAAA+AGG | 0.361489 | 5.1:+63990242 | None:intergenic |
| AGAAGAAAATCGCGATTCTC+CGG | 0.379794 | 5.1:+63990294 | None:intergenic |
| GCAATATTAGGTTGTTGCTT+GGG | 0.414641 | 5.1:-63990368 | MS.gene56683:CDS |
| TAAGGATGGTGTCTTGGTTG+AGG | 0.416353 | 5.1:-63987891 | MS.gene56683:CDS |
| AAGGATGGTGTCTTGGTTGA+GGG | 0.421110 | 5.1:-63987890 | MS.gene56683:CDS |
| TTTGGATTGTAGGTTATAAC+GGG | 0.434899 | 5.1:-63990420 | MS.gene56683:intron |
| TTCCTTTACCAGTACCGGTT+TGG | 0.452853 | 5.1:-63988170 | MS.gene56683:CDS |
| AGCAATATTAGGTTGTTGCT+TGG | 0.460593 | 5.1:-63990369 | MS.gene56683:CDS |
| CAGGGTTCCTTTACCAGTAC+CGG | 0.482927 | 5.1:-63988175 | MS.gene56683:CDS |
| TACCAAACCGGTACTGGTAA+AGG | 0.483907 | 5.1:+63988168 | None:intergenic |
| GTTCACTAAGGATGGTGTCT+TGG | 0.485813 | 5.1:-63987897 | MS.gene56683:CDS |
| CGAGAATGTGCTTGATTGAA+TGG | 0.489697 | 5.1:+63990564 | None:intergenic |
| GGAAACTACCAAACCGGTAC+TGG | 0.493140 | 5.1:+63988162 | None:intergenic |
| GGTTGAGGGCCTCTTCTGGA+AGG | 0.505626 | 5.1:-63987876 | MS.gene56683:CDS |
| TTGTAGGTTATAACGGGTCG+TGG | 0.511975 | 5.1:-63990414 | MS.gene56683:intron |
| GATTCCAGGTTCACTAAGGA+TGG | 0.517156 | 5.1:-63987905 | MS.gene56683:intron |
| TTTGGATTCCAGGTTCACTA+AGG | 0.518138 | 5.1:-63987909 | MS.gene56683:intron |
| GAAGAAAATCGCGATTCTCC+GGG | 0.518343 | 5.1:+63990295 | None:intergenic |
| TCTCGATGAGTCTGCTTCTG+AGG | 0.518489 | 5.1:-63990546 | MS.gene56683:intron |
| TTTGGAGGAAACTACCAAAC+CGG | 0.521957 | 5.1:+63988156 | None:intergenic |
| AATAAATAAAAGGTAAGGAA+AGG | 0.544623 | 5.1:+63990252 | None:intergenic |
| AGAAAATCTGGGTAATTTGG+AGG | 0.545278 | 5.1:+63988141 | None:intergenic |
| CTTCAACATCCTTCCAGAAG+AGG | 0.549952 | 5.1:+63987867 | None:intergenic |
| CAGTGAATAAATAAAAGGTA+AGG | 0.583044 | 5.1:+63990247 | None:intergenic |
| GCAGCTGATCATATACACTA+AGG | 0.584453 | 5.1:-63989467 | MS.gene56683:CDS |
| AACGGGTCGTGGGTATGTTG+AGG | 0.596614 | 5.1:-63990403 | MS.gene56683:CDS |
| GTATACATGTCAGAAAATCT+GGG | 0.601017 | 5.1:+63988130 | None:intergenic |
| TCACAGAAACTTACAGTCAG+AGG | 0.616719 | 5.1:+63989418 | None:intergenic |
| CAGAGGATAAGTAAACAGAA+TGG | 0.624465 | 5.1:+63989435 | None:intergenic |
| ATTCGAAACATGGCAACCAA+AGG | 0.628041 | 5.1:-63990614 | None:intergenic |
| TGTAGGTTATAACGGGTCGT+GGG | 0.632463 | 5.1:-63990413 | MS.gene56683:intron |
| TACGTATGTAGTCTTCAACT+TGG | 0.636467 | 5.1:-63989494 | MS.gene56683:CDS |
| CTACATACGTACGAGAGTCA+AGG | 0.645912 | 5.1:+63989506 | None:intergenic |
| TTACCAAAAGTGTTACCCAG+TGG | 0.756276 | 5.1:-63988051 | MS.gene56683:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATATCTAAATTA+AGG | - | chr5.1:63988641-63988660 | MS.gene56683:intron | 10.0% |
| !!! | ATTTAACATTTTATTATGTA+TGG | - | chr5.1:63989483-63989502 | MS.gene56683:CDS | 10.0% |
| !!! | TTTAACATTTTATTATGTAT+GGG | - | chr5.1:63989484-63989503 | MS.gene56683:CDS | 10.0% |
| !!! | TTTATATCTTATTTTTTACA+GGG | - | chr5.1:63990235-63990254 | MS.gene56683:intron | 10.0% |
| !!! | TTTTATATCTTATTTTTTAC+AGG | - | chr5.1:63990234-63990253 | MS.gene56683:intron | 10.0% |
| !! | ATAAAGAACTTTAATAGTTT+AGG | + | chr5.1:63989901-63989920 | None:intergenic | 15.0% |
| !! | CATTTATCTAAAAATGATTT+AGG | - | chr5.1:63990104-63990123 | MS.gene56683:intron | 15.0% |
| !! | TAAACTATTAAAGTTCTTTA+TGG | - | chr5.1:63989900-63989919 | MS.gene56683:intron | 15.0% |
| !!! | TTTTTTTTTTTGTCAAATAG+CGG | - | chr5.1:63988271-63988290 | MS.gene56683:intron | 15.0% |
| !! | AATAAATAAAAGGTAAGGAA+AGG | + | chr5.1:63988179-63988198 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAAAGAAAGT+TGG | + | chr5.1:63989864-63989883 | None:intergenic | 20.0% |
| !! | CAACAAGATCAAAAAAATTA+GGG | + | chr5.1:63987921-63987940 | None:intergenic | 20.0% |
| !! | TCAACAAGATCAAAAAAATT+AGG | + | chr5.1:63987922-63987941 | None:intergenic | 20.0% |
| !! | TGTGTTGAAAATGAAATATT+TGG | - | chr5.1:63988743-63988762 | MS.gene56683:intron | 20.0% |
| !! | TGTTGTGAAATAACAATTAT+AGG | - | chr5.1:63988514-63988533 | MS.gene56683:intron | 20.0% |
| !! | TTTCAATAGTGATTTAAAGA+GGG | - | chr5.1:63989963-63989982 | MS.gene56683:intron | 20.0% |
| !!! | ATTTGATGATTTATGTGAAA+AGG | - | chr5.1:63988840-63988859 | MS.gene56683:intron | 20.0% |
| !!! | GAGTTTTTTGTTTGTTAATT+GGG | - | chr5.1:63987978-63987997 | MS.gene56683:intron | 20.0% |
| !!! | TAAATGTTATTTCTATGTGT+TGG | + | chr5.1:63989122-63989141 | None:intergenic | 20.0% |
| !!! | TAGTTGTTTTAATTGAAAGT+TGG | - | chr5.1:63988799-63988818 | MS.gene56683:intron | 20.0% |
| !!! | TATGTGAACGATTTTATAAA+GGG | + | chr5.1:63990424-63990443 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTTGTTTGTTAAT+TGG | - | chr5.1:63987977-63987996 | MS.gene56683:intron | 20.0% |
| !!! | TGCTTTTGATTTTATTCTTT+CGG | - | chr5.1:63990160-63990179 | MS.gene56683:intron | 20.0% |
| !!! | TTTGATGATTTATGTGAAAA+GGG | - | chr5.1:63988841-63988860 | MS.gene56683:intron | 20.0% |
| !!! | TTTTCAATAGTGATTTAAAG+AGG | - | chr5.1:63989962-63989981 | MS.gene56683:intron | 20.0% |
| ! | AACATCCAAATTAAGATTCA+AGG | + | chr5.1:63989935-63989954 | None:intergenic | 25.0% |
| ! | ACACACAGTGAATAAATAAA+AGG | + | chr5.1:63988189-63988208 | None:intergenic | 25.0% |
| ! | ATAAGATATAAAAGCCAAGT+TGG | + | chr5.1:63990227-63990246 | None:intergenic | 25.0% |
| ! | ATGTGAAATTGAGCAATATT+AGG | - | chr5.1:63988048-63988067 | MS.gene56683:intron | 25.0% |
| ! | ATTTATGTGAAAAGGGATAT+GGG | - | chr5.1:63988848-63988867 | MS.gene56683:intron | 25.0% |
| ! | CAAACTATTTATGCAGATTA+TGG | - | chr5.1:63989782-63989801 | MS.gene56683:intron | 25.0% |
| ! | CAGTGAATAAATAAAAGGTA+AGG | + | chr5.1:63988184-63988203 | None:intergenic | 25.0% |
| ! | CATAATCTGCATAAATAGTT+TGG | + | chr5.1:63989784-63989803 | None:intergenic | 25.0% |
| ! | CCAGTACTAATTTAAGAAAA+TGG | - | chr5.1:63988364-63988383 | MS.gene56683:intron | 25.0% |
| ! | TTCAATACTCACTTTCTTAT+TGG | - | chr5.1:63989536-63989555 | MS.gene56683:CDS | 25.0% |
| !! | CCATTTTCTTAAATTAGTAC+TGG | + | chr5.1:63988367-63988386 | None:intergenic | 25.0% |
| !! | CTATGTGAACGATTTTATAA+AGG | + | chr5.1:63990425-63990444 | None:intergenic | 25.0% |
| !! | TGTTAATTGGGATTGAATTT+TGG | - | chr5.1:63987990-63988009 | MS.gene56683:intron | 25.0% |
| !! | TTCAATTAGCAAGTTTCTTT+TGG | - | chr5.1:63989232-63989251 | MS.gene56683:intron | 25.0% |
| !! | TTTTGGATTGTAGGTTATAA+CGG | - | chr5.1:63988007-63988026 | MS.gene56683:intron | 25.0% |
| !!! | AAGTTTGTTAAAATTCCACT+AGG | + | chr5.1:63988558-63988577 | None:intergenic | 25.0% |
| !!! | AATGTCTGGTTAGTTTATTT+AGG | - | chr5.1:63989279-63989298 | MS.gene56683:intron | 25.0% |
| !!! | ATACTGTTTTTGTTATGGTT+TGG | - | chr5.1:63988604-63988623 | MS.gene56683:intron | 25.0% |
| !!! | TGCTAATACTGTTTTTGTTA+TGG | - | chr5.1:63988599-63988618 | MS.gene56683:intron | 25.0% |
| !!! | TTAATACTGATTCATATGTC+CGG | + | chr5.1:63990451-63990470 | None:intergenic | 25.0% |
| !!! | TTGTTTTAATTGAAAGTTGG+AGG | - | chr5.1:63988802-63988821 | MS.gene56683:intron | 25.0% |
| AAAAAATTAGGGTTTAGCGA+AGG | + | chr5.1:63987910-63987929 | None:intergenic | 30.0% | |
| AAAGGTAAGGAAAGGATATA+AGG | + | chr5.1:63988171-63988190 | None:intergenic | 30.0% | |
| AGACAAATAATGCTAATGTC+TGG | - | chr5.1:63989265-63989284 | MS.gene56683:intron | 30.0% | |
| AGTTGCCTTGAATCTTAATT+TGG | - | chr5.1:63989927-63989946 | MS.gene56683:intron | 30.0% | |
| AGTTGGAATAACGTAGATAA+AGG | + | chr5.1:63989847-63989866 | None:intergenic | 30.0% | |
| CTAAAGCATGTTCCTTTAAA+TGG | - | chr5.1:63989039-63989058 | MS.gene56683:intron | 30.0% | |
| CTTATTGGATGAAATCAATG+TGG | - | chr5.1:63989551-63989570 | MS.gene56683:intron | 30.0% | |
| GATTTATGTGAAAAGGGATA+TGG | - | chr5.1:63988847-63988866 | MS.gene56683:intron | 30.0% | |
| GGCAAATAAATGAATGCTAT+GGG | - | chr5.1:63989505-63989524 | MS.gene56683:CDS | 30.0% | |
| GTATACATGTCAGAAAATCT+GGG | + | chr5.1:63990301-63990320 | None:intergenic | 30.0% | |
| TTTGGATTGTAGGTTATAAC+GGG | - | chr5.1:63988008-63988027 | MS.gene56683:intron | 30.0% | |
| ! | AATTGAAAGTTGGAGGTTTT+TGG | - | chr5.1:63988809-63988828 | MS.gene56683:intron | 30.0% |
| ! | ACGATTTTATAAAGGGATGA+AGG | + | chr5.1:63990417-63990436 | None:intergenic | 30.0% |
| ! | ATTCCAAATTTTCTCTCACT+AGG | + | chr5.1:63988244-63988263 | None:intergenic | 30.0% |
| ! | CGATTTTATAAAGGGATGAA+GGG | + | chr5.1:63990416-63990435 | None:intergenic | 30.0% |
| ! | CTTCTATTTTCTGTGATTTG+TGG | - | chr5.1:63988575-63988594 | MS.gene56683:intron | 30.0% |
| !! | GTTTTTGTTATGGTTTGGAT+GGG | - | chr5.1:63988609-63988628 | MS.gene56683:intron | 30.0% |
| !! | TGTTTTTGTTATGGTTTGGA+TGG | - | chr5.1:63988608-63988627 | MS.gene56683:intron | 30.0% |
| !! | TTATTTCTATGTGTTGGAAG+TGG | + | chr5.1:63989116-63989135 | None:intergenic | 30.0% |
| !! | TTTTTGTTATGGTTTGGATG+GGG | - | chr5.1:63988610-63988629 | MS.gene56683:intron | 30.0% |
| !!! | GCATCAATCTGTTTTTTGTT+TGG | - | chr5.1:63990501-63990520 | MS.gene56683:intron | 30.0% |
| !!! | TAATGTGTGCACTGATTTTT+TGG | - | chr5.1:63990468-63990487 | MS.gene56683:intron | 30.0% |
| !!! | TTTTTGTCAAATAGCGGATA+GGG | - | chr5.1:63988277-63988296 | MS.gene56683:intron | 30.0% |
| !!! | TTTTTTGTCAAATAGCGGAT+AGG | - | chr5.1:63988276-63988295 | MS.gene56683:intron | 30.0% |
| AAAAAAGAGTAGCAATCCTC+TGG | - | chr5.1:63989664-63989683 | MS.gene56683:intron | 35.0% | |
| AAAAAGAGTAGCAATCCTCT+GGG | - | chr5.1:63989665-63989684 | MS.gene56683:intron | 35.0% | |
| AAAATCGTTCACATAGACAC+CGG | - | chr5.1:63990429-63990448 | MS.gene56683:intron | 35.0% | |
| ACCAGATTATATTTACCCAG+AGG | + | chr5.1:63989683-63989702 | None:intergenic | 35.0% | |
| AGAAAATCTGGGTAATTTGG+AGG | + | chr5.1:63990290-63990309 | None:intergenic | 35.0% | |
| ATCATCCTGCTGCAAATAAA+AGG | + | chr5.1:63989730-63989749 | None:intergenic | 35.0% | |
| ATGCCTAGTGAGAGAAAATT+TGG | - | chr5.1:63988238-63988257 | MS.gene56683:intron | 35.0% | |
| ATGTAATGATGCAAACTGTG+TGG | - | chr5.1:63990016-63990035 | MS.gene56683:intron | 35.0% | |
| ATTGAATCAGTGCACAAAAC+AGG | + | chr5.1:63989068-63989087 | None:intergenic | 35.0% | |
| CAAATAGCTGAAACTAATCG+TGG | - | chr5.1:63989422-63989441 | MS.gene56683:intron | 35.0% | |
| CAGAGGATAAGTAAACAGAA+TGG | + | chr5.1:63988996-63989015 | None:intergenic | 35.0% | |
| CGTATACATGTCAGAAAATC+TGG | + | chr5.1:63990302-63990321 | None:intergenic | 35.0% | |
| CTAACATCCACTCTCTTATT+GGG | + | chr5.1:63989633-63989652 | None:intergenic | 35.0% | |
| GAGTGTGTGTTCAAATTGAA+AGG | - | chr5.1:63988698-63988717 | MS.gene56683:intron | 35.0% | |
| GGAAAAAGAGAAATACCACT+GGG | + | chr5.1:63990395-63990414 | None:intergenic | 35.0% | |
| GGGCAAATAAATGAATGCTA+TGG | - | chr5.1:63989504-63989523 | MS.gene56683:CDS | 35.0% | |
| GTCAGAAAATCTGGGTAATT+TGG | + | chr5.1:63990293-63990312 | None:intergenic | 35.0% | |
| TACGTATGTAGTCTTCAACT+TGG | - | chr5.1:63988934-63988953 | MS.gene56683:intron | 35.0% | |
| TCCTCTGGGTAAATATAATC+TGG | - | chr5.1:63989679-63989698 | MS.gene56683:intron | 35.0% | |
| TCTAACATCCACTCTCTTAT+TGG | + | chr5.1:63989634-63989653 | None:intergenic | 35.0% | |
| TCTCTCTAACAGACACAAAA+TGG | + | chr5.1:63989177-63989196 | None:intergenic | 35.0% | |
| TTGAATCAGTGCACAAAACA+GGG | + | chr5.1:63989067-63989086 | None:intergenic | 35.0% | |
| ! | ACACTTTTGGTAAGATGTAC+TGG | + | chr5.1:63990370-63990389 | None:intergenic | 35.0% |
| ! | ACATCCATGGGTTAAAAACA+TGG | - | chr5.1:63989755-63989774 | MS.gene56683:intron | 35.0% |
| ! | AGCAATATTAGGTTGTTGCT+TGG | - | chr5.1:63988059-63988078 | MS.gene56683:CDS | 35.0% |
| ! | AGGATGATTTTTCACATCCA+TGG | - | chr5.1:63989742-63989761 | MS.gene56683:intron | 35.0% |
| ! | ATTTTGTGTCTGTTAGAGAG+AGG | - | chr5.1:63989176-63989195 | MS.gene56683:intron | 35.0% |
| ! | CTCATGTTTTGTCTTTGTAG+TGG | - | chr5.1:63990055-63990074 | MS.gene56683:intron | 35.0% |
| ! | GAGAACTCTTGTTTGTATGT+AGG | - | chr5.1:63988676-63988695 | MS.gene56683:intron | 35.0% |
| ! | GCAATATTAGGTTGTTGCTT+GGG | - | chr5.1:63988060-63988079 | MS.gene56683:CDS | 35.0% |
| ! | GGATGATTTTTCACATCCAT+GGG | - | chr5.1:63989743-63989762 | MS.gene56683:intron | 35.0% |
| ! | GGGATTGAATTTTGGATTGT+AGG | - | chr5.1:63987998-63988017 | MS.gene56683:intron | 35.0% |
| ! | GTTTTACAAGAAGAAGTTCC+CGG | - | chr5.1:63988115-63988134 | MS.gene56683:CDS | 35.0% |
| ! | TTTAGGACTGTGCTATAGTA+AGG | - | chr5.1:63989296-63989315 | MS.gene56683:intron | 35.0% |
| ! | TTTTGTGTCTGTTAGAGAGA+GGG | - | chr5.1:63989177-63989196 | MS.gene56683:intron | 35.0% |
| !! | ACGGTTTTGATCAGATTTGT+CGG | - | chr5.1:63988434-63988453 | MS.gene56683:intron | 35.0% |
| !! | GTGTTGGAAGTGGATTAAAA+CGG | + | chr5.1:63989106-63989125 | None:intergenic | 35.0% |
| !! | TACATCCTTTTATTTGCAGC+AGG | - | chr5.1:63989722-63989741 | MS.gene56683:intron | 35.0% |
| !! | TCGTTTGCAGAAACTGATTT+TGG | + | chr5.1:63990346-63990365 | None:intergenic | 35.0% |
| !! | TTTAGGTTGAGAATTTGACC+AGG | - | chr5.1:63989811-63989830 | MS.gene56683:intron | 35.0% |
| !!! | CTGTTTTTTGTTTGGATTCC+AGG | - | chr5.1:63990509-63990528 | MS.gene56683:intron | 35.0% |
| ACAAACCACTTACACAGACA+CGG | - | chr5.1:63988313-63988332 | MS.gene56683:intron | 40.0% | |
| ACTATATCACTGTAGCCTAG+TGG | - | chr5.1:63988540-63988559 | MS.gene56683:intron | 40.0% | |
| AGAAGAAAATCGCGATTCTC+CGG | + | chr5.1:63988137-63988156 | None:intergenic | 40.0% | |
| ATCAAAACCGTAACTGACAC+TGG | + | chr5.1:63988425-63988444 | None:intergenic | 40.0% | |
| ATTCGCTTTCTTCTGTCCTT+TGG | + | chr5.1:63987833-63987852 | None:intergenic | 40.0% | |
| CAATGTGAGTCCTACACTTT+GGG | + | chr5.1:63989604-63989623 | None:intergenic | 40.0% | |
| CATCGCACTCTACTTCAAAA+AGG | + | chr5.1:63988776-63988795 | None:intergenic | 40.0% | |
| CGAGAATGTGCTTGATTGAA+TGG | + | chr5.1:63987867-63987886 | None:intergenic | 40.0% | |
| CGCGTATTGTGAAACAATAG+TGG | + | chr5.1:63988473-63988492 | None:intergenic | 40.0% | |
| GATAAAGGCAAGTACTATCC+TGG | + | chr5.1:63989832-63989851 | None:intergenic | 40.0% | |
| GATTACACCCAATAAGAGAG+TGG | - | chr5.1:63989623-63989642 | MS.gene56683:intron | 40.0% | |
| GCAGATTATGGCATGTCTTT+AGG | - | chr5.1:63989794-63989813 | MS.gene56683:intron | 40.0% | |
| GCAGCTGATCATATACACTA+AGG | - | chr5.1:63988961-63988980 | MS.gene56683:intron | 40.0% | |
| GGGAAAAAGAGAAATACCAC+TGG | + | chr5.1:63990396-63990415 | None:intergenic | 40.0% | |
| TCAATGTGAGTCCTACACTT+TGG | + | chr5.1:63989605-63989624 | None:intergenic | 40.0% | |
| TCACAGAAACTTACAGTCAG+AGG | + | chr5.1:63989013-63989032 | None:intergenic | 40.0% | |
| TGAATCAGTGCACAAAACAG+GGG | + | chr5.1:63989066-63989085 | None:intergenic | 40.0% | |
| TGGGTGCTTCATGTTTATCA+TGG | + | chr5.1:63989376-63989395 | None:intergenic | 40.0% | |
| TGGGTTTCACATAAAGTGGT+AGG | + | chr5.1:63989579-63989598 | None:intergenic | 40.0% | |
| TTTGGAGGAAACTACCAAAC+CGG | + | chr5.1:63990275-63990294 | None:intergenic | 40.0% | |
| TTTGGATTCCAGGTTCACTA+AGG | - | chr5.1:63990519-63990538 | MS.gene56683:intron | 40.0% | |
| ! | ATACCACTGGGTAACACTTT+TGG | + | chr5.1:63990383-63990402 | None:intergenic | 40.0% |
| ! | ATGAAGCACCCATGTTAAAC+AGG | - | chr5.1:63989384-63989403 | MS.gene56683:intron | 40.0% |
| ! | GAGTATTGTGTGTTCCAACT+TGG | - | chr5.1:63990210-63990229 | MS.gene56683:intron | 40.0% |
| ! | GGAATGGGTTTCACATAAAG+TGG | + | chr5.1:63989583-63989602 | None:intergenic | 40.0% |
| ! | TGAAGCACCCATGTTAAACA+GGG | - | chr5.1:63989385-63989404 | MS.gene56683:intron | 40.0% |
| ! | TTTTGGATCTGCGCTTTCTA+TGG | + | chr5.1:63990329-63990348 | None:intergenic | 40.0% |
| !! | GCAAGTTTCTTTTGGTCTTC+TGG | - | chr5.1:63989240-63989259 | MS.gene56683:intron | 40.0% |
| !! | GTTGCCATGTTTTTAACCCA+TGG | + | chr5.1:63989762-63989781 | None:intergenic | 40.0% |
| !! | TTACCAAAAGTGTTACCCAG+TGG | - | chr5.1:63990377-63990396 | MS.gene56683:CDS | 40.0% |
| !!! | TTTTGAAGTAGAGTGCGATG+TGG | - | chr5.1:63988776-63988795 | MS.gene56683:intron | 40.0% |
| AAGGATGGTGTCTTGGTTGA+GGG | - | chr5.1:63990538-63990557 | MS.gene56683:intron | 45.0% | |
| CAAAACAGGGGGCCATTTAA+AGG | + | chr5.1:63989054-63989073 | None:intergenic | 45.0% | |
| CGTGTAGCCCTGTTTAACAT+GGG | + | chr5.1:63989395-63989414 | None:intergenic | 45.0% | |
| CTACATACGTACGAGAGTCA+AGG | + | chr5.1:63988925-63988944 | None:intergenic | 45.0% | |
| CTTCAACATCCTTCCAGAAG+AGG | + | chr5.1:63990564-63990583 | None:intergenic | 45.0% | |
| GAAACCCATTCCCAAAGTGT+AGG | - | chr5.1:63989591-63989610 | MS.gene56683:intron | 45.0% | |
| GAAGAAAATCGCGATTCTCC+GGG | + | chr5.1:63988136-63988155 | None:intergenic | 45.0% | |
| GAATCAGTGCACAAAACAGG+GGG | + | chr5.1:63989065-63989084 | None:intergenic | 45.0% | |
| GATTCCAGGTTCACTAAGGA+TGG | - | chr5.1:63990523-63990542 | MS.gene56683:intron | 45.0% | |
| GTTCACTAAGGATGGTGTCT+TGG | - | chr5.1:63990531-63990550 | MS.gene56683:intron | 45.0% | |
| TAAGGATGGTGTCTTGGTTG+AGG | - | chr5.1:63990537-63990556 | MS.gene56683:intron | 45.0% | |
| TCGTGTAGCCCTGTTTAACA+TGG | + | chr5.1:63989396-63989415 | None:intergenic | 45.0% | |
| TGTTGTGCCAGTGTCAGTTA+CGG | - | chr5.1:63988415-63988434 | MS.gene56683:intron | 45.0% | |
| TTGACATGTAGTGTCGTCTC+TGG | + | chr5.1:63988342-63988361 | None:intergenic | 45.0% | |
| TTTGTCTTTGTAGTGGCTGC+TGG | - | chr5.1:63990062-63990081 | MS.gene56683:intron | 45.0% | |
| ! | GAGTCCTACACTTTGGGAAT+GGG | + | chr5.1:63989598-63989617 | None:intergenic | 45.0% |
| ! | TGAGTCCTACACTTTGGGAA+TGG | + | chr5.1:63989599-63989618 | None:intergenic | 45.0% |
| !! | TACCAAACCGGTACTGGTAA+AGG | + | chr5.1:63990263-63990282 | None:intergenic | 45.0% |
| !! | TGTAGGTTATAACGGGTCGT+GGG | - | chr5.1:63988015-63988034 | MS.gene56683:intron | 45.0% |
| !! | TTCCTTTACCAGTACCGGTT+TGG | - | chr5.1:63990258-63990277 | MS.gene56683:CDS | 45.0% |
| !! | TTGTAGGTTATAACGGGTCG+TGG | - | chr5.1:63988014-63988033 | MS.gene56683:intron | 45.0% |
| CAGGGTTCCTTTACCAGTAC+CGG | - | chr5.1:63990253-63990272 | MS.gene56683:CDS | 50.0% | |
| GACACCATCCTTAGTGAACC+TGG | + | chr5.1:63990530-63990549 | None:intergenic | 50.0% | |
| GGAAACTACCAAACCGGTAC+TGG | + | chr5.1:63990269-63990288 | None:intergenic | 50.0% | |
| TCTCGATGAGTCTGCTTCTG+AGG | - | chr5.1:63987882-63987901 | MS.gene56683:CDS | 50.0% | |
| AACGGGTCGTGGGTATGTTG+AGG | - | chr5.1:63988025-63988044 | MS.gene56683:intron | 55.0% | |
| GGTGTCCGTGTCTGTGTAAG+TGG | + | chr5.1:63988321-63988340 | None:intergenic | 55.0% | |
| TCTTGGTTGAGGGCCTCTTC+TGG | - | chr5.1:63990548-63990567 | MS.gene56683:CDS | 55.0% | |
| GGTTGAGGGCCTCTTCTGGA+AGG | - | chr5.1:63990552-63990571 | MS.gene56683:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 63987823 | 63990627 | 63987823 | ID=MS.gene56683 |
| chr5.1 | mRNA | 63987823 | 63990627 | 63987823 | ID=MS.gene56683.t1;Parent=MS.gene56683 |
| chr5.1 | exon | 63990547 | 63990627 | 63990547 | ID=MS.gene56683.t1.exon1;Parent=MS.gene56683.t1 |
| chr5.1 | CDS | 63990547 | 63990627 | 63990547 | ID=cds.MS.gene56683.t1;Parent=MS.gene56683.t1 |
| chr5.1 | exon | 63990246 | 63990430 | 63990246 | ID=MS.gene56683.t1.exon2;Parent=MS.gene56683.t1 |
| chr5.1 | CDS | 63990246 | 63990430 | 63990246 | ID=cds.MS.gene56683.t1;Parent=MS.gene56683.t1 |
| chr5.1 | exon | 63989432 | 63989561 | 63989432 | ID=MS.gene56683.t1.exon3;Parent=MS.gene56683.t1 |
| chr5.1 | CDS | 63989432 | 63989561 | 63989432 | ID=cds.MS.gene56683.t1;Parent=MS.gene56683.t1 |
| chr5.1 | exon | 63988052 | 63988194 | 63988052 | ID=MS.gene56683.t1.exon4;Parent=MS.gene56683.t1 |
| chr5.1 | CDS | 63988052 | 63988194 | 63988052 | ID=cds.MS.gene56683.t1;Parent=MS.gene56683.t1 |
| chr5.1 | exon | 63987823 | 63987919 | 63987823 | ID=MS.gene56683.t1.exon5;Parent=MS.gene56683.t1 |
| chr5.1 | CDS | 63987823 | 63987919 | 63987823 | ID=cds.MS.gene56683.t1;Parent=MS.gene56683.t1 |
| Gene Sequence |
| Protein sequence |
