Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56699.t1 | GAU33996.1 | 85 | 408 | 39 | 3 | 1 | 404 | 49 | 438 | 7.90E-186 | 659.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56699.t1 | P92961 | 70.6 | 408 | 116 | 2 | 1 | 404 | 35 | 442 | 1.2e-163 | 577.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56699.t1 | A0A2Z6MNH1 | 85.0 | 408 | 39 | 3 | 1 | 404 | 49 | 438 | 5.7e-186 | 659.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061191 | MS.gene56699 | 0.904077 | 1.79E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56699.t1 | MTR_5g081630 | 100.000 | 41 | 0 | 0 | 212 | 252 | 190 | 230 | 3.94e-20 | 91.7 |
| MS.gene56699.t1 | MTR_3g069960 | 40.909 | 88 | 48 | 1 | 169 | 252 | 196 | 283 | 2.45e-15 | 77.0 |
| MS.gene56699.t1 | MTR_3g069960 | 40.909 | 88 | 48 | 1 | 169 | 252 | 143 | 230 | 3.19e-15 | 77.0 |
| MS.gene56699.t1 | MTR_3g069960 | 40.909 | 88 | 48 | 1 | 169 | 252 | 196 | 283 | 4.04e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56699.t1 | AT3G55740 | 85.366 | 41 | 6 | 0 | 212 | 252 | 190 | 230 | 6.74e-17 | 82.0 |
| MS.gene56699.t1 | AT3G55740 | 85.366 | 41 | 6 | 0 | 212 | 252 | 190 | 230 | 6.74e-17 | 82.0 |
| MS.gene56699.t1 | AT2G39890 | 85.366 | 41 | 6 | 0 | 212 | 252 | 190 | 230 | 7.89e-17 | 82.0 |
| MS.gene56699.t1 | AT3G55740 | 85.366 | 41 | 6 | 0 | 212 | 252 | 246 | 286 | 8.88e-17 | 82.0 |
| MS.gene56699.t1 | AT2G39890 | 85.366 | 41 | 6 | 0 | 212 | 252 | 249 | 289 | 9.51e-17 | 82.0 |
| MS.gene56699.t1 | AT2G39890 | 85.366 | 41 | 6 | 0 | 212 | 252 | 249 | 289 | 9.51e-17 | 82.0 |
| MS.gene56699.t1 | AT2G36590 | 78.049 | 41 | 9 | 0 | 212 | 252 | 243 | 283 | 6.10e-15 | 75.9 |
| MS.gene56699.t1 | AT2G36590 | 78.049 | 41 | 9 | 0 | 212 | 252 | 243 | 283 | 1.17e-14 | 75.9 |
Find 87 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTGTTTATGTTCTATTT+AGG | 0.133427 | 5.1:+63833585 | MS.gene56699:intron |
| ATCTTTCAGCTCTTGGAATT+TGG | 0.137122 | 5.1:+63833687 | MS.gene56699:CDS |
| GATCTTGCTGGATATATTTA+TGG | 0.154303 | 5.1:+63832151 | MS.gene56699:CDS |
| ATTGCTATGCTTCATGAATT+TGG | 0.182375 | 5.1:+63832103 | MS.gene56699:CDS |
| AAATATTGGCTACATCATTT+TGG | 0.209110 | 5.1:+63833090 | MS.gene56699:CDS |
| GCTTATGTTCTTGGATATTC+AGG | 0.210818 | 5.1:+63831995 | MS.gene56699:CDS |
| ATTAATAGTGCTTATGTTCT+TGG | 0.219245 | 5.1:+63831986 | MS.gene56699:CDS |
| TGGTTACCTTTGCAGGATAC+TGG | 0.229066 | 5.1:+63835015 | MS.gene56699:CDS |
| GATACCAAACATGGGATTAA+AGG | 0.240091 | 5.1:+63835663 | MS.gene56699:CDS |
| AGTAAAATATTTACGACAAT+TGG | 0.244065 | 5.1:+63834753 | MS.gene56699:CDS |
| TTATATCTGGTTACCTTTGC+AGG | 0.244469 | 5.1:+63835008 | MS.gene56699:CDS |
| GGCTGTTTATGTTCTATTTA+GGG | 0.253457 | 5.1:+63833586 | MS.gene56699:intron |
| AAGTCCGATGTACGAGTATT+TGG | 0.263204 | 5.1:+63835641 | MS.gene56699:CDS |
| GAACTTATCATTTAGAATCT+TGG | 0.267192 | 5.1:+63835704 | MS.gene56699:CDS |
| TGCGAAAACATGATAAGTTT+TGG | 0.273586 | 5.1:-63835979 | None:intergenic |
| AGGGACCATTATGGTTCCTT+TGG | 0.291528 | 5.1:+63832015 | MS.gene56699:CDS |
| ATTCCTCATCTTTCAGCTCT+TGG | 0.291738 | 5.1:+63833680 | MS.gene56699:CDS |
| TTTGCAGGATACTGGGCTTA+TGG | 0.315869 | 5.1:+63835023 | MS.gene56699:CDS |
| TGGAGTTCTGCCATTATATC+TGG | 0.316550 | 5.1:+63834995 | MS.gene56699:CDS |
| TGGATATTCAGGGACCATTA+TGG | 0.319732 | 5.1:+63832006 | MS.gene56699:CDS |
| TTCATCATGTTCTTTACAAC+TGG | 0.341148 | 5.1:-63834948 | None:intergenic |
| GTAAAATATTTACGACAATT+GGG | 0.357812 | 5.1:+63834754 | MS.gene56699:CDS |
| GGGACCATTATGGTTCCTTT+GGG | 0.360448 | 5.1:+63832016 | MS.gene56699:CDS |
| GGTTGGATAGGTGGTGTTGT+TGG | 0.363628 | 5.1:+63832037 | MS.gene56699:CDS |
| CCATTATGGTTCCTTTGGGT+TGG | 0.367229 | 5.1:+63832020 | MS.gene56699:CDS |
| TAACATCCATTCAAAAGCTT+TGG | 0.380271 | 5.1:+63835877 | MS.gene56699:CDS |
| ATTAGATACCGTGATCTTGC+TGG | 0.380903 | 5.1:+63832139 | MS.gene56699:CDS |
| ACTCCCTTTAATCCCATGTT+TGG | 0.383334 | 5.1:-63835667 | None:intergenic |
| GCCACAACTTTCACCCAGAT+TGG | 0.385424 | 5.1:-63835085 | None:intergenic |
| TTTGGCATTGGATCAACATT+TGG | 0.387263 | 5.1:+63835895 | MS.gene56699:CDS |
| GCAAAGGTAACCAGATATAA+TGG | 0.392872 | 5.1:-63835005 | None:intergenic |
| TTTGGCTGGTTCAGCTTTGA+AGG | 0.399376 | 5.1:+63833108 | MS.gene56699:CDS |
| GCTCGAGATTATAGTGTTCC+AGG | 0.418700 | 5.1:+63834720 | MS.gene56699:CDS |
| GTGGGGTTTGTGTTGACAAC+AGG | 0.421500 | 5.1:+63831962 | MS.gene56699:CDS |
| ATGGTTCCTTTGGGTTGGAT+AGG | 0.421589 | 5.1:+63832025 | MS.gene56699:CDS |
| CCATTCAAAAGCTTTGGCAT+TGG | 0.427620 | 5.1:+63835883 | MS.gene56699:CDS |
| ATAATGTCAAGGGTCCAATC+TGG | 0.445142 | 5.1:+63835071 | MS.gene56699:CDS |
| AGGAATGCTTCCTGAGATAC+AGG | 0.446567 | 5.1:+63834809 | MS.gene56699:CDS |
| GGTTACCTTTGCAGGATACT+GGG | 0.449562 | 5.1:+63835016 | MS.gene56699:CDS |
| TCATTTAGAATCTTGGTAAG+AGG | 0.460627 | 5.1:+63835711 | MS.gene56699:CDS |
| TTGAACCATACCTGTATCTC+AGG | 0.461355 | 5.1:-63834819 | None:intergenic |
| ATACCAAACATGGGATTAAA+GGG | 0.462442 | 5.1:+63835664 | MS.gene56699:CDS |
| CTCGTGTTCGCATACAATAC+AGG | 0.468059 | 5.1:+63834789 | MS.gene56699:CDS |
| GATTTGCAAGGATAAATGTA+AGG | 0.470613 | 5.1:-63835824 | None:intergenic |
| CTTATGTTCTTGGATATTCA+GGG | 0.476371 | 5.1:+63831996 | MS.gene56699:CDS |
| GTTCCTTTGGGTTGGATAGG+TGG | 0.476872 | 5.1:+63832028 | MS.gene56699:CDS |
| GTTTGTTCTTATTTGTCACT+AGG | 0.484789 | 5.1:-63835854 | None:intergenic |
| TCAGCTCTACTGCCATTCCT+TGG | 0.498923 | 5.1:+63835762 | MS.gene56699:CDS |
| TCAGCTCTTGGAATTTGGCT+CGG | 0.504062 | 5.1:+63833692 | MS.gene56699:CDS |
| TAGATTCATGGTTTCAAGTG+GGG | 0.513864 | 5.1:+63831945 | None:intergenic |
| GGAGATTTCATGAGCCTCAC+GGG | 0.518640 | 5.1:+63835783 | MS.gene56699:CDS |
| TGAAAGATGAGGAATACAAA+TGG | 0.520939 | 5.1:-63833672 | None:intergenic |
| CCAACCCAAAGGAACCATAA+TGG | 0.524633 | 5.1:-63832020 | None:intergenic |
| TGGAGATTTCATGAGCCTCA+CGG | 0.525781 | 5.1:+63835782 | MS.gene56699:CDS |
| ATTTGCAAGGATAAATGTAA+GGG | 0.535895 | 5.1:-63835823 | None:intergenic |
| CTTGTACTGTCACTAAAAGA+TGG | 0.543411 | 5.1:+63833755 | MS.gene56699:CDS |
| TAAAATATTTACGACAATTG+GGG | 0.554830 | 5.1:+63834755 | MS.gene56699:CDS |
| TAATGTCAAGGGTCCAATCT+GGG | 0.555099 | 5.1:+63835072 | MS.gene56699:CDS |
| TGTAGATTCATGGTTTCAAG+TGG | 0.557082 | 5.1:+63831943 | None:intergenic |
| GTAGATTCATGGTTTCAAGT+GGG | 0.559483 | 5.1:+63831944 | None:intergenic |
| TGCACACACAAGTCCAGCTA+TGG | 0.562499 | 5.1:-63833642 | None:intergenic |
| CTATGCTTCATGAATTTGGT+GGG | 0.571541 | 5.1:+63832107 | MS.gene56699:CDS |
| CCGCAGCGCTGCAATAGTTG+CGG | 0.572180 | 5.1:-63835940 | None:intergenic |
| AGTTGCGGCAACAGACATGA+TGG | 0.574833 | 5.1:-63835925 | None:intergenic |
| TCCAATCTGGGTGAAAGTTG+TGG | 0.575627 | 5.1:+63835084 | MS.gene56699:CDS |
| TGCAATGACTGATTGAAGAA+AGG | 0.580697 | 5.1:-63835119 | None:intergenic |
| CTCATGAAATCTCCAAGGAA+TGG | 0.583815 | 5.1:-63835774 | None:intergenic |
| GTATCCAAATACTCGTACAT+CGG | 0.587381 | 5.1:-63835645 | None:intergenic |
| GAGTATTTGGATACCAAACA+TGG | 0.591198 | 5.1:+63835654 | MS.gene56699:CDS |
| GCTATGCTTCATGAATTTGG+TGG | 0.593644 | 5.1:+63832106 | MS.gene56699:CDS |
| CCAGCTATGGCAATAAAATG+TGG | 0.593703 | 5.1:-63833629 | None:intergenic |
| TTTAGAATCTTGGTAAGAGG+TGG | 0.593972 | 5.1:+63835714 | MS.gene56699:CDS |
| GAAAAGCATATTGCCTCACA+TGG | 0.595626 | 5.1:+63833038 | MS.gene56699:CDS |
| ATTCCAAGAGCTGAAAGATG+AGG | 0.614707 | 5.1:-63833683 | None:intergenic |
| GGAACACTATAATCTCGAGC+TGG | 0.614856 | 5.1:-63834717 | None:intergenic |
| AAATATATCCAGCAAGATCA+CGG | 0.617306 | 5.1:-63832147 | None:intergenic |
| CTAGGTACATATGATTTGCA+AGG | 0.626482 | 5.1:-63835836 | None:intergenic |
| ATATAATGGCAGAACTCCAA+CGG | 0.633354 | 5.1:-63834991 | None:intergenic |
| ATAAGCCCAGTATCCTGCAA+AGG | 0.654594 | 5.1:-63835021 | None:intergenic |
| CCGCAACTATTGCAGCGCTG+CGG | 0.655381 | 5.1:+63835940 | MS.gene56699:CDS |
| TTTGCAAGGATAAATGTAAG+GGG | 0.658355 | 5.1:-63835822 | None:intergenic |
| TGAGGCTCATGAAATCTCCA+AGG | 0.658818 | 5.1:-63835779 | None:intergenic |
| ACACCACCTATCCAACCCAA+AGG | 0.675537 | 5.1:-63832031 | None:intergenic |
| GTGCTATGACAATATATGCG+AGG | 0.685612 | 5.1:-63833733 | None:intergenic |
| AGTATTTGGATACCAAACAT+GGG | 0.691576 | 5.1:+63835655 | MS.gene56699:CDS |
| CATACTGCAGAGTCCATGTG+AGG | 0.716059 | 5.1:-63833051 | None:intergenic |
| ATGTGCTTATAGCTCCCGTG+AGG | 0.755171 | 5.1:-63835797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAAGTTATAAAATATTT+AGG | - | chr5.1:63835573-63835592 | None:intergenic | 10.0% |
| !!! | AATCTTTTCATGATAAATAT+TGG | + | chr5.1:63833076-63833095 | MS.gene56699:CDS | 15.0% |
| !!! | TATTAAATAAATCAGCTTTT+TGG | + | chr5.1:63832559-63832578 | MS.gene56699:intron | 15.0% |
| !!! | TTTAAAATTTAGTTTAGATG+TGG | + | chr5.1:63835179-63835198 | MS.gene56699:intron | 15.0% |
| !! | AAAGAAACAATTAATTACAG+AGG | - | chr5.1:63833899-63833918 | None:intergenic | 20.0% |
| !! | AATTTGCAAAATGACAATTT+AGG | + | chr5.1:63832620-63832639 | MS.gene56699:intron | 20.0% |
| !! | AGAAGAGAATAATGTAATTA+TGG | - | chr5.1:63833159-63833178 | None:intergenic | 20.0% |
| !! | AGTAAAATATTTACGACAAT+TGG | + | chr5.1:63834753-63834772 | MS.gene56699:CDS | 20.0% |
| !! | ATAAAGAAATCTTGATATCA+TGG | - | chr5.1:63832542-63832561 | None:intergenic | 20.0% |
| !! | GATAGTAAAAAATAAACTGT+TGG | - | chr5.1:63834684-63834703 | None:intergenic | 20.0% |
| !! | GTAAAATATTTACGACAATT+GGG | + | chr5.1:63834754-63834773 | MS.gene56699:CDS | 20.0% |
| !! | TAAAATATTTACGACAATTG+GGG | + | chr5.1:63834755-63834774 | MS.gene56699:CDS | 20.0% |
| !! | TAACACACATATTTAATACT+TGG | + | chr5.1:63833856-63833875 | MS.gene56699:intron | 20.0% |
| !! | TTTGGTCATTGAAATTATAA+GGG | + | chr5.1:63832577-63832596 | MS.gene56699:intron | 20.0% |
| !!! | AAAGTGAGTTTTACTTTATT+TGG | + | chr5.1:63834896-63834915 | MS.gene56699:intron | 20.0% |
| !!! | AACAAGGTAAAGATAAATTT+TGG | - | chr5.1:63834479-63834498 | None:intergenic | 20.0% |
| !!! | ACAGTTTATTTTTTACTATC+AGG | + | chr5.1:63834684-63834703 | MS.gene56699:intron | 20.0% |
| !!! | AGTAAAACTCACTTTAAAAA+TGG | - | chr5.1:63834891-63834910 | None:intergenic | 20.0% |
| !!! | CAAAATTATGGTGTTAAATT+TGG | - | chr5.1:63832686-63832705 | None:intergenic | 20.0% |
| !!! | GGTTTGTCATTTTAAAAATT+AGG | + | chr5.1:63835484-63835503 | MS.gene56699:intron | 20.0% |
| !!! | TTTTGGTCATTGAAATTATA+AGG | + | chr5.1:63832576-63832595 | MS.gene56699:intron | 20.0% |
| ! | AAAATCGTGAATTTAGATAC+AGG | + | chr5.1:63835512-63835531 | MS.gene56699:intron | 25.0% |
| ! | AAAATGTATAAGTGGAGAAA+AGG | + | chr5.1:63835463-63835482 | MS.gene56699:intron | 25.0% |
| ! | AAATCGTGAATTTAGATACA+GGG | + | chr5.1:63835513-63835532 | MS.gene56699:intron | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr5.1:63832357-63832376 | MS.gene56699:intron | 25.0% |
| ! | AATTTGTGCATTCATTAAGA+TGG | + | chr5.1:63833345-63833364 | MS.gene56699:intron | 25.0% |
| ! | ACATCGAATCTTCAAAATTA+TGG | - | chr5.1:63832698-63832717 | None:intergenic | 25.0% |
| ! | ATTAATAGTGCTTATGTTCT+TGG | + | chr5.1:63831986-63832005 | MS.gene56699:CDS | 25.0% |
| ! | ATTGAATAGTATCAAGAATC+TGG | + | chr5.1:63832917-63832936 | MS.gene56699:intron | 25.0% |
| ! | ATTTGCAAGGATAAATGTAA+GGG | - | chr5.1:63835826-63835845 | None:intergenic | 25.0% |
| ! | GATATAACTGATGTTATGTT+TGG | + | chr5.1:63832204-63832223 | MS.gene56699:intron | 25.0% |
| ! | GATTATTGAAAGCAATATGT+AGG | + | chr5.1:63832740-63832759 | MS.gene56699:intron | 25.0% |
| ! | TAACAACAAGTTCTTGAATT+AGG | - | chr5.1:63832481-63832500 | None:intergenic | 25.0% |
| ! | TTATTTGGTTGTAACCTAAT+AGG | + | chr5.1:63834911-63834930 | MS.gene56699:intron | 25.0% |
| !! | GAACTTATCATTTAGAATCT+TGG | + | chr5.1:63835704-63835723 | MS.gene56699:CDS | 25.0% |
| !! | TATGGTGTTAAATTTGGAAA+AGG | - | chr5.1:63832680-63832699 | None:intergenic | 25.0% |
| !! | TTTTCTACCTACAATGAAAA+TGG | - | chr5.1:63833023-63833042 | None:intergenic | 25.0% |
| !! | TTTTTGCTGAATAATGTCAA+GGG | + | chr5.1:63835061-63835080 | MS.gene56699:CDS | 25.0% |
| !!! | AAAATAAGCTTTTTTGTCCT+TGG | - | chr5.1:63832845-63832864 | None:intergenic | 25.0% |
| !!! | AAATATTGGCTACATCATTT+TGG | + | chr5.1:63833090-63833109 | MS.gene56699:CDS | 25.0% |
| !!! | ATATCAGACGTTTTGAAAAT+TGG | - | chr5.1:63835269-63835288 | None:intergenic | 25.0% |
| !!! | GGTAAAGATAAATTTTGGAA+AGG | - | chr5.1:63834474-63834493 | None:intergenic | 25.0% |
| !!! | TATCAGACGTTTTGAAAATT+GGG | - | chr5.1:63835268-63835287 | None:intergenic | 25.0% |
| !!! | TTTTAAAAGCAGCAAAGTAT+TGG | - | chr5.1:63835166-63835185 | None:intergenic | 25.0% |
| !!! | TTTTTTGAGTAATTTGCATC+TGG | + | chr5.1:63834276-63834295 | MS.gene56699:intron | 25.0% |
| AAATATATCCAGCAAGATCA+CGG | - | chr5.1:63832150-63832169 | None:intergenic | 30.0% | |
| AAGAGTGACATTATATTCCT+TGG | - | chr5.1:63834099-63834118 | None:intergenic | 30.0% | |
| AATCGTGAATTTAGATACAG+GGG | + | chr5.1:63835514-63835533 | MS.gene56699:intron | 30.0% | |
| ACATCAGTTATATCTAGTCA+AGG | - | chr5.1:63832198-63832217 | None:intergenic | 30.0% | |
| ACTTCAGATAACTAGTGTTA+TGG | + | chr5.1:63833960-63833979 | MS.gene56699:intron | 30.0% | |
| AGGCTGTTTATGTTCTATTT+AGG | + | chr5.1:63833585-63833604 | MS.gene56699:intron | 30.0% | |
| AGTATTTGGATACCAAACAT+GGG | + | chr5.1:63835655-63835674 | MS.gene56699:CDS | 30.0% | |
| ATACCAAACATGGGATTAAA+GGG | + | chr5.1:63835664-63835683 | MS.gene56699:CDS | 30.0% | |
| ATCAACCTCAAAAGTTTAGA+TGG | - | chr5.1:63835296-63835315 | None:intergenic | 30.0% | |
| ATCAGTTATATCTAGTCAAG+GGG | - | chr5.1:63832196-63832215 | None:intergenic | 30.0% | |
| ATTGCTATGCTTCATGAATT+TGG | + | chr5.1:63832103-63832122 | MS.gene56699:CDS | 30.0% | |
| CAAGGTTATATATTTCTTCC+TGG | + | chr5.1:63834839-63834858 | MS.gene56699:intron | 30.0% | |
| CATCAGTTATATCTAGTCAA+GGG | - | chr5.1:63832197-63832216 | None:intergenic | 30.0% | |
| CTTATGTTCTTGGATATTCA+GGG | + | chr5.1:63831996-63832015 | MS.gene56699:CDS | 30.0% | |
| GATCTTGCTGGATATATTTA+TGG | + | chr5.1:63832151-63832170 | MS.gene56699:CDS | 30.0% | |
| GATTTGCAAGGATAAATGTA+AGG | - | chr5.1:63835827-63835846 | None:intergenic | 30.0% | |
| GCTTTATGATTCTCAATCAT+TGG | - | chr5.1:63834597-63834616 | None:intergenic | 30.0% | |
| GGCTGTTTATGTTCTATTTA+GGG | + | chr5.1:63833586-63833605 | MS.gene56699:intron | 30.0% | |
| GTCATTGAAATTATAAGGGT+CGG | + | chr5.1:63832581-63832600 | MS.gene56699:intron | 30.0% | |
| TAACATCCATTCAAAAGCTT+TGG | + | chr5.1:63835877-63835896 | MS.gene56699:CDS | 30.0% | |
| TCAACCTCAAAAGTTTAGAT+GGG | - | chr5.1:63835295-63835314 | None:intergenic | 30.0% | |
| TCTTTCAAACAGTCTCATAA+GGG | + | chr5.1:63832406-63832425 | MS.gene56699:intron | 30.0% | |
| TGAAAGATGAGGAATACAAA+TGG | - | chr5.1:63833675-63833694 | None:intergenic | 30.0% | |
| TTCATCATGTTCTTTACAAC+TGG | - | chr5.1:63834951-63834970 | None:intergenic | 30.0% | |
| TTTAAGAGACTTACAATCCA+AGG | + | chr5.1:63832825-63832844 | MS.gene56699:intron | 30.0% | |
| TTTGCAAGGATAAATGTAAG+GGG | - | chr5.1:63835825-63835844 | None:intergenic | 30.0% | |
| ! | ATATCGTGGATTTAAAACTG+AGG | - | chr5.1:63835239-63835258 | None:intergenic | 30.0% |
| ! | ATGTCACTCTTTTGTGATTT+TGG | + | chr5.1:63834108-63834127 | MS.gene56699:intron | 30.0% |
| ! | CTATATTTTCAGTTTACCGT+TGG | + | chr5.1:63834975-63834994 | MS.gene56699:CDS | 30.0% |
| ! | CTTTTTGCTGAATAATGTCA+AGG | + | chr5.1:63835060-63835079 | MS.gene56699:CDS | 30.0% |
| ! | GTTTGTTCCATTTTCATTGT+AGG | + | chr5.1:63833013-63833032 | MS.gene56699:intron | 30.0% |
| ! | GTTTGTTCTTATTTGTCACT+AGG | - | chr5.1:63835857-63835876 | None:intergenic | 30.0% |
| ! | TATCGTGGATTTAAAACTGA+GGG | - | chr5.1:63835238-63835257 | None:intergenic | 30.0% |
| ! | TCATTTAGAATCTTGGTAAG+AGG | + | chr5.1:63835711-63835730 | MS.gene56699:CDS | 30.0% |
| ! | TGCGAAAACATGATAAGTTT+TGG | - | chr5.1:63835982-63836001 | None:intergenic | 30.0% |
| ! | TTATCTTTACCTTGTTGTGA+AGG | + | chr5.1:63834483-63834502 | MS.gene56699:intron | 30.0% |
| ! | TTCTCCACTTATACATTTTG+AGG | - | chr5.1:63835462-63835481 | None:intergenic | 30.0% |
| ! | TTTTCCCATCTAAACTTTTG+AGG | + | chr5.1:63835288-63835307 | MS.gene56699:intron | 30.0% |
| !! | ATTTTACTTGTTGATGTTCC+TGG | - | chr5.1:63834741-63834760 | None:intergenic | 30.0% |
| !! | CTGAATTTTGATGATTTGAC+AGG | - | chr5.1:63835439-63835458 | None:intergenic | 30.0% |
| !!! | AAATGAGTTTTTTAGCGAGA+TGG | + | chr5.1:63835374-63835393 | MS.gene56699:intron | 30.0% |
| !!! | AATGAGTTTTTTAGCGAGAT+GGG | + | chr5.1:63835375-63835394 | MS.gene56699:intron | 30.0% |
| !!! | ATCAGACGTTTTGAAAATTG+GGG | - | chr5.1:63835267-63835286 | None:intergenic | 30.0% |
| !!! | CAGTTTTAAATCCACGATAT+TGG | + | chr5.1:63835239-63835258 | MS.gene56699:intron | 30.0% |
| AAGCAGTATATAGTTCGACT+CGG | + | chr5.1:63834516-63834535 | MS.gene56699:intron | 35.0% | |
| AAGTCAATCTCAATCCAAAC+AGG | + | chr5.1:63832454-63832473 | MS.gene56699:intron | 35.0% | |
| ACCAAAAATCGTGAGACAAA+AGG | - | chr5.1:63835214-63835233 | None:intergenic | 35.0% | |
| ATATAATGGCAGAACTCCAA+CGG | - | chr5.1:63834994-63835013 | None:intergenic | 35.0% | |
| ATCGTGAATTTAGATACAGG+GGG | + | chr5.1:63835515-63835534 | MS.gene56699:intron | 35.0% | |
| ATCTTTCAGCTCTTGGAATT+TGG | + | chr5.1:63833687-63833706 | MS.gene56699:CDS | 35.0% | |
| ATGCTTGGTTAATTCAGTGT+GGG | + | chr5.1:63834647-63834666 | MS.gene56699:intron | 35.0% | |
| CAAAAATCGTGAGACAAAAG+GGG | - | chr5.1:63835212-63835231 | None:intergenic | 35.0% | |
| CCAAAAATCGTGAGACAAAA+GGG | - | chr5.1:63835213-63835232 | None:intergenic | 35.0% | |
| CGATAGCATATCACAAATCA+TGG | - | chr5.1:63833383-63833402 | None:intergenic | 35.0% | |
| CTATGCTTCATGAATTTGGT+GGG | + | chr5.1:63832107-63832126 | MS.gene56699:CDS | 35.0% | |
| CTCTTTCAAACAGTCTCATA+AGG | + | chr5.1:63832405-63832424 | MS.gene56699:intron | 35.0% | |
| CTTGTACTGTCACTAAAAGA+TGG | + | chr5.1:63833755-63833774 | MS.gene56699:CDS | 35.0% | |
| GAGTATTTGGATACCAAACA+TGG | + | chr5.1:63835654-63835673 | MS.gene56699:CDS | 35.0% | |
| GATACCAAACATGGGATTAA+AGG | + | chr5.1:63835663-63835682 | MS.gene56699:CDS | 35.0% | |
| GCAAAGGTAACCAGATATAA+TGG | - | chr5.1:63835008-63835027 | None:intergenic | 35.0% | |
| GCTTATGTTCTTGGATATTC+AGG | + | chr5.1:63831995-63832014 | MS.gene56699:CDS | 35.0% | |
| GTATCCAAATACTCGTACAT+CGG | - | chr5.1:63835648-63835667 | None:intergenic | 35.0% | |
| TATGCTTGGTTAATTCAGTG+TGG | + | chr5.1:63834646-63834665 | MS.gene56699:intron | 35.0% | |
| TCAGCCTCAAAATGTATAAG+TGG | + | chr5.1:63835455-63835474 | MS.gene56699:intron | 35.0% | |
| TGAATCCAAACAAAAACTCC+AGG | - | chr5.1:63834860-63834879 | None:intergenic | 35.0% | |
| TGAATGCACAAATTGACATC+AGG | - | chr5.1:63833339-63833358 | None:intergenic | 35.0% | |
| TGCAATGACTGATTGAAGAA+AGG | - | chr5.1:63835122-63835141 | None:intergenic | 35.0% | |
| TTATATCTGGTTACCTTTGC+AGG | + | chr5.1:63835008-63835027 | MS.gene56699:CDS | 35.0% | |
| TTCTTGAATTAGGACCTGTT+TGG | - | chr5.1:63832471-63832490 | None:intergenic | 35.0% | |
| ! | AAACCTTTTCCCATTAGATG+AGG | - | chr5.1:63833424-63833443 | None:intergenic | 35.0% |
| ! | ATCGTGGATTTAAAACTGAG+GGG | - | chr5.1:63835237-63835256 | None:intergenic | 35.0% |
| ! | CTAGGTACATATGATTTGCA+AGG | - | chr5.1:63835839-63835858 | None:intergenic | 35.0% |
| ! | TTCATTTTCTCTGCTTACCA+AGG | + | chr5.1:63834079-63834098 | MS.gene56699:intron | 35.0% |
| ! | TTCTTCCTGGAGTTTTTGTT+TGG | + | chr5.1:63834852-63834871 | MS.gene56699:intron | 35.0% |
| ! | TTTAGAATCTTGGTAAGAGG+TGG | + | chr5.1:63835714-63835733 | MS.gene56699:CDS | 35.0% |
| ! | TTTGGCATTGGATCAACATT+TGG | + | chr5.1:63835895-63835914 | MS.gene56699:CDS | 35.0% |
| !! | AATTAATTACAGAGGCACCA+GGG | - | chr5.1:63833891-63833910 | None:intergenic | 35.0% |
| !! | AGGTACTGAATTGGTTTCTA+CGG | + | chr5.1:63832760-63832779 | MS.gene56699:intron | 35.0% |
| !! | CAATTGCTTTTCACTATGCT+TGG | + | chr5.1:63834632-63834651 | MS.gene56699:intron | 35.0% |
| !! | GCAATATGTAGGTACTGAAT+TGG | + | chr5.1:63832751-63832770 | MS.gene56699:intron | 35.0% |
| !! | TTGTTGATTTGTTGTCATGC+AGG | + | chr5.1:63833565-63833584 | MS.gene56699:intron | 35.0% |
| !!! | ATGAGTTTTTTAGCGAGATG+GGG | + | chr5.1:63835376-63835395 | MS.gene56699:intron | 35.0% |
| !!! | TCAGACGTTTTGAAAATTGG+GGG | - | chr5.1:63835266-63835285 | None:intergenic | 35.0% |
| AAGTCCGATGTACGAGTATT+TGG | + | chr5.1:63835641-63835660 | MS.gene56699:CDS | 40.0% | |
| ACTAACCTGCTAAGGATTCT+GGG | + | chr5.1:63833256-63833275 | MS.gene56699:intron | 40.0% | |
| ACTCCCTTTAATCCCATGTT+TGG | - | chr5.1:63835670-63835689 | None:intergenic | 40.0% | |
| AGAAACTTACGTGACATCTG+AGG | + | chr5.1:63835340-63835359 | MS.gene56699:intron | 40.0% | |
| AGACTGTTTGAAAGAGCTCA+TGG | - | chr5.1:63832401-63832420 | None:intergenic | 40.0% | |
| ATAATGTCAAGGGTCCAATC+TGG | + | chr5.1:63835071-63835090 | MS.gene56699:CDS | 40.0% | |
| ATGTTCAGCCTAGAGATAGA+GGG | - | chr5.1:63834044-63834063 | None:intergenic | 40.0% | |
| ATTAGATACCGTGATCTTGC+TGG | + | chr5.1:63832139-63832158 | MS.gene56699:CDS | 40.0% | |
| ATTCCAAGAGCTGAAAGATG+AGG | - | chr5.1:63833686-63833705 | None:intergenic | 40.0% | |
| ATTCCTCATCTTTCAGCTCT+TGG | + | chr5.1:63833680-63833699 | MS.gene56699:CDS | 40.0% | |
| CAGCTGAAATGCTACATACA+AGG | - | chr5.1:63834192-63834211 | None:intergenic | 40.0% | |
| CCAGCTATGGCAATAAAATG+TGG | - | chr5.1:63833632-63833651 | None:intergenic | 40.0% | |
| CTCATGAAATCTCCAAGGAA+TGG | - | chr5.1:63835777-63835796 | None:intergenic | 40.0% | |
| GAGCTCATGGAAACATAGTA+TGG | - | chr5.1:63832388-63832407 | None:intergenic | 40.0% | |
| GCTATGCTTCATGAATTTGG+TGG | + | chr5.1:63832106-63832125 | MS.gene56699:CDS | 40.0% | |
| GTGCTATGACAATATATGCG+AGG | - | chr5.1:63833736-63833755 | None:intergenic | 40.0% | |
| TAATGTCAAGGGTCCAATCT+GGG | + | chr5.1:63835072-63835091 | MS.gene56699:CDS | 40.0% | |
| TCATCATTCCCTCTATCTCT+AGG | + | chr5.1:63834033-63834052 | MS.gene56699:intron | 40.0% | |
| TGACTGCACAAATTGAGATC+AGG | - | chr5.1:63833497-63833516 | None:intergenic | 40.0% | |
| TGAGATACAGGTATGGTTCA+AGG | + | chr5.1:63834821-63834840 | MS.gene56699:intron | 40.0% | |
| TGGAGTTCTGCCATTATATC+TGG | + | chr5.1:63834995-63835014 | MS.gene56699:CDS | 40.0% | |
| TGGATATTCAGGGACCATTA+TGG | + | chr5.1:63832006-63832025 | MS.gene56699:CDS | 40.0% | |
| TTGAACCATACCTGTATCTC+AGG | - | chr5.1:63834822-63834841 | None:intergenic | 40.0% | |
| TTGATCCGACCTCATCTAAT+GGG | + | chr5.1:63833412-63833431 | MS.gene56699:intron | 40.0% | |
| TTTGATCCGACCTCATCTAA+TGG | + | chr5.1:63833411-63833430 | MS.gene56699:intron | 40.0% | |
| ! | CAGTACCTCATTCACGATTT+TGG | - | chr5.1:63835542-63835561 | None:intergenic | 40.0% |
| ! | CCAATGCCAAAGCTTTTGAA+TGG | - | chr5.1:63835886-63835905 | None:intergenic | 40.0% |
| ! | CCACATTTTATTGCCATAGC+TGG | + | chr5.1:63833629-63833648 | MS.gene56699:CDS | 40.0% |
| ! | CCATTCAAAAGCTTTGGCAT+TGG | + | chr5.1:63835883-63835902 | MS.gene56699:CDS | 40.0% |
| ! | CCCTTTTGTCTCACGATTTT+TGG | + | chr5.1:63835210-63835229 | MS.gene56699:intron | 40.0% |
| ! | CTTTTCCCATTAGATGAGGT+CGG | - | chr5.1:63833420-63833439 | None:intergenic | 40.0% |
| ! | GAAAAGCATATTGCCTCACA+TGG | + | chr5.1:63833038-63833057 | MS.gene56699:CDS | 40.0% |
| ! | TTACCTTGTTGTGAAGGCTA+GGG | + | chr5.1:63834489-63834508 | MS.gene56699:intron | 40.0% |
| ! | TTTACCTTGTTGTGAAGGCT+AGG | + | chr5.1:63834488-63834507 | MS.gene56699:intron | 40.0% |
| !! | ATACTTGGTTTTCTGTTCCC+TGG | + | chr5.1:63833871-63833890 | MS.gene56699:intron | 40.0% |
| !! | ATATAGTTCGACTCGGCTAT+CGG | + | chr5.1:63834523-63834542 | MS.gene56699:intron | 40.0% |
| !! | ATTGGCTACATCATTTTGGC+TGG | + | chr5.1:63833094-63833113 | MS.gene56699:CDS | 40.0% |
| !! | CAATTAATTACAGAGGCACC+AGG | - | chr5.1:63833892-63833911 | None:intergenic | 40.0% |
| !! | TTGTGATTTTGGTCTTCTGC+TGG | + | chr5.1:63834119-63834138 | MS.gene56699:intron | 40.0% |
| AAATTGGGGGACCAATATCG+TGG | - | chr5.1:63835253-63835272 | None:intergenic | 45.0% | |
| ACAAAATGACGCGACAAGCA+AGG | - | chr5.1:63832963-63832982 | None:intergenic | 45.0% | |
| ACTACTCGTTCAGAGAAGTC+AGG | - | chr5.1:63834566-63834585 | None:intergenic | 45.0% | |
| AGGAATGCTTCCTGAGATAC+AGG | + | chr5.1:63834809-63834828 | MS.gene56699:CDS | 45.0% | |
| AGGGACCATTATGGTTCCTT+TGG | + | chr5.1:63832015-63832034 | MS.gene56699:CDS | 45.0% | |
| ATAAGCCCAGTATCCTGCAA+AGG | - | chr5.1:63835024-63835043 | None:intergenic | 45.0% | |
| CCAACCCAAAGGAACCATAA+TGG | - | chr5.1:63832023-63832042 | None:intergenic | 45.0% | |
| CCATTATGGTTCCTTTGGGT+TGG | + | chr5.1:63832020-63832039 | MS.gene56699:CDS | 45.0% | |
| CGACCTCATCTAATGGGAAA+AGG | + | chr5.1:63833418-63833437 | MS.gene56699:intron | 45.0% | |
| CTCGTGTTCGCATACAATAC+AGG | + | chr5.1:63834789-63834808 | MS.gene56699:CDS | 45.0% | |
| CTGCACAAATTGAGATCAGG+AGG | - | chr5.1:63833494-63833513 | None:intergenic | 45.0% | |
| CTTATTTCCACAAGCTCTCG+AGG | - | chr5.1:63832343-63832362 | None:intergenic | 45.0% | |
| GACTAACCTGCTAAGGATTC+TGG | + | chr5.1:63833255-63833274 | MS.gene56699:intron | 45.0% | |
| GATAGCGTCTCTTATGCTTC+TGG | + | chr5.1:63835607-63835626 | MS.gene56699:intron | 45.0% | |
| GATGTTCAGCCTAGAGATAG+AGG | - | chr5.1:63834045-63834064 | None:intergenic | 45.0% | |
| GCTCGAGATTATAGTGTTCC+AGG | + | chr5.1:63834720-63834739 | MS.gene56699:CDS | 45.0% | |
| GGAACACTATAATCTCGAGC+TGG | - | chr5.1:63834720-63834739 | None:intergenic | 45.0% | |
| GGGACCATTATGGTTCCTTT+GGG | + | chr5.1:63832016-63832035 | MS.gene56699:CDS | 45.0% | |
| GGTTACCTTTGCAGGATACT+GGG | + | chr5.1:63835016-63835035 | MS.gene56699:CDS | 45.0% | |
| GTTTCTCGACTAACCTGCTA+AGG | + | chr5.1:63833248-63833267 | MS.gene56699:intron | 45.0% | |
| TCAGCTCTTGGAATTTGGCT+CGG | + | chr5.1:63833692-63833711 | MS.gene56699:CDS | 45.0% | |
| TCCAATCTGGGTGAAAGTTG+TGG | + | chr5.1:63835084-63835103 | MS.gene56699:CDS | 45.0% | |
| TGAGGCTCATGAAATCTCCA+AGG | - | chr5.1:63835782-63835801 | None:intergenic | 45.0% | |
| TGCTTCCTGAGATACAGGTA+TGG | + | chr5.1:63834814-63834833 | MS.gene56699:intron | 45.0% | |
| TGGAGATTTCATGAGCCTCA+CGG | + | chr5.1:63835782-63835801 | MS.gene56699:CDS | 45.0% | |
| TGGTTACCTTTGCAGGATAC+TGG | + | chr5.1:63835015-63835034 | MS.gene56699:CDS | 45.0% | |
| TTGACAGGTGAAAGCTTGCA+TGG | - | chr5.1:63835424-63835443 | None:intergenic | 45.0% | |
| TTGTCTGATCGTCGCCTATT+AGG | - | chr5.1:63834928-63834947 | None:intergenic | 45.0% | |
| TTTGCAGGATACTGGGCTTA+TGG | + | chr5.1:63835023-63835042 | MS.gene56699:CDS | 45.0% | |
| ! | TTTGGCTGGTTCAGCTTTGA+AGG | + | chr5.1:63833108-63833127 | MS.gene56699:CDS | 45.0% |
| !! | ATGGTTCCTTTGGGTTGGAT+AGG | + | chr5.1:63832025-63832044 | MS.gene56699:CDS | 45.0% |
| !! | GAAGTCAGGAAAGTGCTGAT+AGG | - | chr5.1:63834552-63834571 | None:intergenic | 45.0% |
| !! | GCAACACTGAATTGATGACG+CGG | - | chr5.1:63835402-63835421 | None:intergenic | 45.0% |
| !! | TATAGTTCGACTCGGCTATC+GGG | + | chr5.1:63834524-63834543 | MS.gene56699:intron | 45.0% |
| ACACCACCTATCCAACCCAA+AGG | - | chr5.1:63832034-63832053 | None:intergenic | 50.0% | |
| AGTTGCGGCAACAGACATGA+TGG | - | chr5.1:63835928-63835947 | None:intergenic | 50.0% | |
| ATGTGCTTATAGCTCCCGTG+AGG | - | chr5.1:63835800-63835819 | None:intergenic | 50.0% | |
| CAAGACCCAGAATCCTTAGC+AGG | - | chr5.1:63833264-63833283 | None:intergenic | 50.0% | |
| CATACTGCAGAGTCCATGTG+AGG | - | chr5.1:63833054-63833073 | None:intergenic | 50.0% | |
| GCCACAACTTTCACCCAGAT+TGG | - | chr5.1:63835088-63835107 | None:intergenic | 50.0% | |
| GGAGATTTCATGAGCCTCAC+GGG | + | chr5.1:63835783-63835802 | MS.gene56699:CDS | 50.0% | |
| GGGGACCAAAATCGTGAATG+AGG | + | chr5.1:63835534-63835553 | MS.gene56699:intron | 50.0% | |
| GGTCTTCTGCTGGTATTCAG+AGG | + | chr5.1:63834129-63834148 | MS.gene56699:intron | 50.0% | |
| TCAGCTCTACTGCCATTCCT+TGG | + | chr5.1:63835762-63835781 | MS.gene56699:CDS | 50.0% | |
| TGCACACACAAGTCCAGCTA+TGG | - | chr5.1:63833645-63833664 | None:intergenic | 50.0% | |
| ! | GTGGGGTTTGTGTTGACAAC+AGG | + | chr5.1:63831962-63831981 | MS.gene56699:CDS | 50.0% |
| !! | GGTTGGATAGGTGGTGTTGT+TGG | + | chr5.1:63832037-63832056 | MS.gene56699:CDS | 50.0% |
| !! | GTTCCTTTGGGTTGGATAGG+TGG | + | chr5.1:63832028-63832047 | MS.gene56699:CDS | 50.0% |
| ! | AAGCTAGCCTCGAGAGCTTG+TGG | + | chr5.1:63832333-63832352 | MS.gene56699:intron | 55.0% |
| ! | GAGCCCTAGCCTTCACAACA+AGG | - | chr5.1:63834495-63834514 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 63831948 | 63836010 | 63831948 | ID=MS.gene56699 |
| chr5.1 | mRNA | 63831948 | 63836010 | 63831948 | ID=MS.gene56699.t1;Parent=MS.gene56699 |
| chr5.1 | exon | 63831948 | 63832172 | 63831948 | ID=MS.gene56699.t1.exon1;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63831948 | 63832172 | 63831948 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| chr5.1 | exon | 63833035 | 63833129 | 63833035 | ID=MS.gene56699.t1.exon2;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63833035 | 63833129 | 63833035 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| chr5.1 | exon | 63833587 | 63833776 | 63833587 | ID=MS.gene56699.t1.exon3;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63833587 | 63833776 | 63833587 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| chr5.1 | exon | 63834706 | 63834830 | 63834706 | ID=MS.gene56699.t1.exon4;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63834706 | 63834830 | 63834706 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| chr5.1 | exon | 63834944 | 63835147 | 63834944 | ID=MS.gene56699.t1.exon5;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63834944 | 63835147 | 63834944 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| chr5.1 | exon | 63835633 | 63836010 | 63835633 | ID=MS.gene56699.t1.exon6;Parent=MS.gene56699.t1 |
| chr5.1 | CDS | 63835633 | 63836010 | 63835633 | ID=cds.MS.gene56699.t1;Parent=MS.gene56699.t1 |
| Gene Sequence |
| Protein sequence |
