Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061191.t1 | GAU33996.1 | 97.4 | 266 | 7 | 0 | 1 | 266 | 49 | 314 | 2.90E-142 | 514.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061191.t1 | P92961 | 81.3 | 283 | 53 | 0 | 1 | 283 | 35 | 317 | 6.3e-130 | 464.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061191.t1 | A0A2Z6MNH1 | 97.4 | 266 | 7 | 0 | 1 | 266 | 49 | 314 | 2.1e-142 | 514.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061191 | MS.gene29579 | 0.939736 | 7.69E-100 | -1.69E-46 |
| MS.gene061191 | MS.gene56699 | 0.904077 | 1.79E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTGTTTATGTTCTATTT+AGG | 0.133427 | 5.1:+63822546 | MS.gene061191:intron |
| ATCTTTCAGCTCTTGGAATT+TGG | 0.137122 | 5.1:+63822648 | MS.gene061191:CDS |
| GATCTTGCTGGATATATTTA+TGG | 0.154303 | 5.1:+63821111 | MS.gene061191:CDS |
| ATTGCTATGCTTCATGAATT+TGG | 0.182375 | 5.1:+63821063 | MS.gene061191:CDS |
| AAATATTGGCTACATCATTT+TGG | 0.209110 | 5.1:+63822050 | MS.gene061191:CDS |
| GCTTATGTTCTTGGATATTC+AGG | 0.210818 | 5.1:+63820955 | MS.gene061191:CDS |
| ATTAATAGTGCTTATGTTCT+TGG | 0.219245 | 5.1:+63820946 | MS.gene061191:CDS |
| TGGTTACCTTTGCAGGATAC+TGG | 0.229066 | 5.1:+63823977 | MS.gene061191:CDS |
| AGTAAAATATTTACGACAAT+TGG | 0.244065 | 5.1:+63823715 | MS.gene061191:CDS |
| TTATATCTGGTTACCTTTGC+AGG | 0.244469 | 5.1:+63823970 | MS.gene061191:CDS |
| GGCTGTTTATGTTCTATTTA+GGG | 0.253457 | 5.1:+63822547 | MS.gene061191:intron |
| AGGGACCATTATGGTTCCTT+TGG | 0.291528 | 5.1:+63820975 | MS.gene061191:CDS |
| ATTCCTCATCTTTCAGCTCT+TGG | 0.291738 | 5.1:+63822641 | MS.gene061191:CDS |
| TTTGCAGGATACTGGGCTTA+TGG | 0.315869 | 5.1:+63823985 | MS.gene061191:CDS |
| TGGAGTTCTGCCATTATATC+TGG | 0.316550 | 5.1:+63823957 | MS.gene061191:CDS |
| TGGATATTCAGGGACCATTA+TGG | 0.319732 | 5.1:+63820966 | MS.gene061191:CDS |
| TTCATCATGTTCTTTACAAC+TGG | 0.341148 | 5.1:-63823910 | None:intergenic |
| GTAAAATATTTACGACAATT+GGG | 0.357812 | 5.1:+63823716 | MS.gene061191:CDS |
| GGGACCATTATGGTTCCTTT+GGG | 0.360448 | 5.1:+63820976 | MS.gene061191:CDS |
| GGTTGGATAGGTGGTGTTGT+TGG | 0.363628 | 5.1:+63820997 | MS.gene061191:CDS |
| CCATTATGGTTCCTTTGGGT+TGG | 0.367229 | 5.1:+63820980 | MS.gene061191:CDS |
| ATTAGATACCGTGATCTTGC+TGG | 0.380903 | 5.1:+63821099 | MS.gene061191:CDS |
| GCCACAACTTTCACCCAGAT+TGG | 0.385424 | 5.1:-63824048 | None:intergenic |
| GCAAAGGTAACCAGATATAA+TGG | 0.392872 | 5.1:-63823967 | None:intergenic |
| TTTGGCTGGTTCAGCTTTGA+AGG | 0.399376 | 5.1:+63822068 | MS.gene061191:CDS |
| GCTCGAGATTATAGTGTTCC+AGG | 0.418700 | 5.1:+63823682 | MS.gene061191:CDS |
| GTGGGGTTTGTGTTGACAAC+AGG | 0.421500 | 5.1:+63820922 | MS.gene061191:CDS |
| ATGGTTCCTTTGGGTTGGAT+AGG | 0.421589 | 5.1:+63820985 | MS.gene061191:CDS |
| ATAATGTCAAGGGTCCAATC+TGG | 0.445142 | 5.1:+63824034 | MS.gene061191:CDS |
| AGGAATGCTTCCTGAGATAC+AGG | 0.446567 | 5.1:+63823771 | MS.gene061191:CDS |
| GGTTACCTTTGCAGGATACT+GGG | 0.449562 | 5.1:+63823978 | MS.gene061191:CDS |
| TTGAACCATACCTGTATCTC+AGG | 0.461355 | 5.1:-63823781 | None:intergenic |
| CTCGTGTTCGCATACAATAC+AGG | 0.468059 | 5.1:+63823751 | MS.gene061191:CDS |
| CTTATGTTCTTGGATATTCA+GGG | 0.476371 | 5.1:+63820956 | MS.gene061191:CDS |
| GTTCCTTTGGGTTGGATAGG+TGG | 0.476872 | 5.1:+63820988 | MS.gene061191:CDS |
| TCAGCTCTTGGAATTTGGCT+CGG | 0.504062 | 5.1:+63822653 | MS.gene061191:CDS |
| TAGATTCATGGTTTCAAGTG+GGG | 0.513864 | 5.1:+63820905 | None:intergenic |
| TGAAAGATGAGGAATACAAA+TGG | 0.520939 | 5.1:-63822633 | None:intergenic |
| CCAACCCAAAGGAACCATAA+TGG | 0.524633 | 5.1:-63820980 | None:intergenic |
| CTTGTACTGTCACTAAAAGA+TGG | 0.543411 | 5.1:+63822716 | MS.gene061191:CDS |
| TAAAATATTTACGACAATTG+GGG | 0.554830 | 5.1:+63823717 | MS.gene061191:CDS |
| TAATGTCAAGGGTCCAATCT+GGG | 0.555099 | 5.1:+63824035 | MS.gene061191:CDS |
| TGTAGATTCATGGTTTCAAG+TGG | 0.557082 | 5.1:+63820903 | None:intergenic |
| GTAGATTCATGGTTTCAAGT+GGG | 0.559483 | 5.1:+63820904 | None:intergenic |
| TGCACACACAAGTCCAGCTA+TGG | 0.562499 | 5.1:-63822603 | None:intergenic |
| CTATGCTTCATGAATTTGGT+GGG | 0.571541 | 5.1:+63821067 | MS.gene061191:CDS |
| TCCAATCTGGGTGAAAGTTG+TGG | 0.575627 | 5.1:+63824047 | MS.gene061191:CDS |
| TGCAATGACTGATTGAAGAA+AGG | 0.580697 | 5.1:-63824082 | None:intergenic |
| GCTATGCTTCATGAATTTGG+TGG | 0.593644 | 5.1:+63821066 | MS.gene061191:CDS |
| CCAGCTATGGCAATAAAATG+TGG | 0.593703 | 5.1:-63822590 | None:intergenic |
| GAAAAGCATATTGCCTCACA+TGG | 0.595626 | 5.1:+63821998 | MS.gene061191:CDS |
| ATTCCAAGAGCTGAAAGATG+AGG | 0.614707 | 5.1:-63822644 | None:intergenic |
| GGAACACTATAATCTCGAGC+TGG | 0.614856 | 5.1:-63823679 | None:intergenic |
| AAATATATCCAGCAAGATCA+CGG | 0.617306 | 5.1:-63821107 | None:intergenic |
| ATATAATGGCAGAACTCCAA+CGG | 0.633354 | 5.1:-63823953 | None:intergenic |
| ATAAGCCCAGTATCCTGCAA+AGG | 0.654594 | 5.1:-63823983 | None:intergenic |
| ACACCACCTATCCAACCCAA+AGG | 0.675537 | 5.1:-63820991 | None:intergenic |
| GTGCTATGACAATATATGCG+AGG | 0.685612 | 5.1:-63822694 | None:intergenic |
| CATACTGCAGAGTCCATGTG+AGG | 0.716059 | 5.1:-63822011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTTCATGATAAATAT+TGG | + | chr5.1:63822036-63822055 | MS.gene061191:CDS | 15.0% |
| !!! | TATTAAATAAATCAGCTTTT+TGG | + | chr5.1:63821519-63821538 | MS.gene061191:intron | 15.0% |
| !! | AAAGAAACAATTAATTACAG+AGG | - | chr5.1:63822860-63822879 | None:intergenic | 20.0% |
| !! | AATTTGCAAAATGACAATTT+AGG | + | chr5.1:63821580-63821599 | MS.gene061191:intron | 20.0% |
| !! | AGAAGAGAATAATGTAATTA+TGG | - | chr5.1:63822119-63822138 | None:intergenic | 20.0% |
| !! | AGTAAAATATTTACGACAAT+TGG | + | chr5.1:63823715-63823734 | MS.gene061191:CDS | 20.0% |
| !! | ATAAAGAAATCTTGATATCA+TGG | - | chr5.1:63821502-63821521 | None:intergenic | 20.0% |
| !! | GATAGTAAAAAATAAACTGT+TGG | - | chr5.1:63823646-63823665 | None:intergenic | 20.0% |
| !! | GTAAAATATTTACGACAATT+GGG | + | chr5.1:63823716-63823735 | MS.gene061191:CDS | 20.0% |
| !! | TAAAATATTTACGACAATTG+GGG | + | chr5.1:63823717-63823736 | MS.gene061191:CDS | 20.0% |
| !! | TAACACACATATTTAATACT+TGG | + | chr5.1:63822817-63822836 | MS.gene061191:intron | 20.0% |
| !! | TTTGGTCATTGAAATTATAA+GGG | + | chr5.1:63821537-63821556 | MS.gene061191:intron | 20.0% |
| !!! | AAAGTGAGTTTTACTTTATT+TGG | + | chr5.1:63823858-63823877 | MS.gene061191:intron | 20.0% |
| !!! | AACAAGGTAAAGATAAATTT+TGG | - | chr5.1:63823440-63823459 | None:intergenic | 20.0% |
| !!! | ACAGTTTATTTTTTACTATC+AGG | + | chr5.1:63823646-63823665 | MS.gene061191:intron | 20.0% |
| !!! | AGTAAAACTCACTTTAAAAA+TGG | - | chr5.1:63823853-63823872 | None:intergenic | 20.0% |
| !!! | CAAAATTATGGTGTTAAATT+TGG | - | chr5.1:63821646-63821665 | None:intergenic | 20.0% |
| !!! | TTTTGGTCATTGAAATTATA+AGG | + | chr5.1:63821536-63821555 | MS.gene061191:intron | 20.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr5.1:63821317-63821336 | MS.gene061191:intron | 25.0% |
| ! | AATTTGTGCATTCATTAAGA+TGG | + | chr5.1:63822306-63822325 | MS.gene061191:intron | 25.0% |
| ! | ACATCGAATCTTCAAAATTA+TGG | - | chr5.1:63821658-63821677 | None:intergenic | 25.0% |
| ! | ATTAATAGTGCTTATGTTCT+TGG | + | chr5.1:63820946-63820965 | MS.gene061191:CDS | 25.0% |
| ! | ATTGAATAGTATCAAGAATC+TGG | + | chr5.1:63821877-63821896 | MS.gene061191:intron | 25.0% |
| ! | GATATAACTGATGTTATGTT+TGG | + | chr5.1:63821164-63821183 | MS.gene061191:intron | 25.0% |
| ! | GATTATTGAAAGCAATATGT+AGG | + | chr5.1:63821700-63821719 | MS.gene061191:intron | 25.0% |
| ! | TAACAACAAGTTCTTGAATT+AGG | - | chr5.1:63821441-63821460 | None:intergenic | 25.0% |
| ! | TTATTTGGTTGTAACCTAAT+AGG | + | chr5.1:63823873-63823892 | MS.gene061191:intron | 25.0% |
| !! | TATGGTGTTAAATTTGGAAA+AGG | - | chr5.1:63821640-63821659 | None:intergenic | 25.0% |
| !! | TTTTCTACCTACAATGAAAA+TGG | - | chr5.1:63821983-63822002 | None:intergenic | 25.0% |
| !! | TTTTTGCTGAATAATGTCAA+GGG | + | chr5.1:63824024-63824043 | MS.gene061191:CDS | 25.0% |
| !!! | AAAATAAGCTTTTTTGTCCT+TGG | - | chr5.1:63821805-63821824 | None:intergenic | 25.0% |
| !!! | AAATATTGGCTACATCATTT+TGG | + | chr5.1:63822050-63822069 | MS.gene061191:CDS | 25.0% |
| !!! | GGTAAAGATAAATTTTGGAA+AGG | - | chr5.1:63823435-63823454 | None:intergenic | 25.0% |
| !!! | TTTTTTGAGTAATTTGCATC+TGG | + | chr5.1:63823237-63823256 | MS.gene061191:intron | 25.0% |
| !!! | TTTTTTGCTGAATAATGTCA+AGG | + | chr5.1:63824023-63824042 | MS.gene061191:CDS | 25.0% |
| AAATATATCCAGCAAGATCA+CGG | - | chr5.1:63821110-63821129 | None:intergenic | 30.0% | |
| AAGAGTGACATTATATTCCT+TGG | - | chr5.1:63823060-63823079 | None:intergenic | 30.0% | |
| ACATCAGTTATATCTAGTCA+AGG | - | chr5.1:63821158-63821177 | None:intergenic | 30.0% | |
| ACTTCAGATAACTAGTGTTA+TGG | + | chr5.1:63822921-63822940 | MS.gene061191:intron | 30.0% | |
| AGGCTGTTTATGTTCTATTT+AGG | + | chr5.1:63822546-63822565 | MS.gene061191:intron | 30.0% | |
| ATCAGTTATATCTAGTCAAG+GGG | - | chr5.1:63821156-63821175 | None:intergenic | 30.0% | |
| ATTGCTATGCTTCATGAATT+TGG | + | chr5.1:63821063-63821082 | MS.gene061191:CDS | 30.0% | |
| CAAGGTTATATATTTCTTCC+TGG | + | chr5.1:63823801-63823820 | MS.gene061191:intron | 30.0% | |
| CATCAGTTATATCTAGTCAA+GGG | - | chr5.1:63821157-63821176 | None:intergenic | 30.0% | |
| CTTATGTTCTTGGATATTCA+GGG | + | chr5.1:63820956-63820975 | MS.gene061191:CDS | 30.0% | |
| GATCTTGCTGGATATATTTA+TGG | + | chr5.1:63821111-63821130 | MS.gene061191:CDS | 30.0% | |
| GCTTTATGATTCTCAATCAT+TGG | - | chr5.1:63823559-63823578 | None:intergenic | 30.0% | |
| GGCTGTTTATGTTCTATTTA+GGG | + | chr5.1:63822547-63822566 | MS.gene061191:intron | 30.0% | |
| GTCATTGAAATTATAAGGGT+CGG | + | chr5.1:63821541-63821560 | MS.gene061191:intron | 30.0% | |
| TCTTTCAAACAGTCTCATAA+GGG | + | chr5.1:63821366-63821385 | MS.gene061191:intron | 30.0% | |
| TGAAAGATGAGGAATACAAA+TGG | - | chr5.1:63822636-63822655 | None:intergenic | 30.0% | |
| TTCATCATGTTCTTTACAAC+TGG | - | chr5.1:63823913-63823932 | None:intergenic | 30.0% | |
| TTTAAGAGACTTACAATCCA+AGG | + | chr5.1:63821785-63821804 | MS.gene061191:intron | 30.0% | |
| ! | ATGTCACTCTTTTGTGATTT+TGG | + | chr5.1:63823069-63823088 | MS.gene061191:intron | 30.0% |
| ! | CTATATTTTCAGTTTACCGT+TGG | + | chr5.1:63823937-63823956 | MS.gene061191:CDS | 30.0% |
| ! | GTTTGTTCCATTTTCATTGT+AGG | + | chr5.1:63821973-63821992 | MS.gene061191:intron | 30.0% |
| ! | TTATCTTTACCTTGTTGTGA+AGG | + | chr5.1:63823444-63823463 | MS.gene061191:intron | 30.0% |
| !! | ATTTTACTTGTTGATGTTCC+TGG | - | chr5.1:63823703-63823722 | None:intergenic | 30.0% |
| AAGCAGTATATAGTTCGACT+CGG | + | chr5.1:63823477-63823496 | MS.gene061191:intron | 35.0% | |
| AAGTCAATCTCAATCCAAAC+AGG | + | chr5.1:63821414-63821433 | MS.gene061191:intron | 35.0% | |
| ATATAATGGCAGAACTCCAA+CGG | - | chr5.1:63823956-63823975 | None:intergenic | 35.0% | |
| ATCTTTCAGCTCTTGGAATT+TGG | + | chr5.1:63822648-63822667 | MS.gene061191:CDS | 35.0% | |
| ATGCTTGGTTAATTCAGTGT+GGG | + | chr5.1:63823609-63823628 | MS.gene061191:intron | 35.0% | |
| CGATAGCATATCACAAATCA+TGG | - | chr5.1:63822344-63822363 | None:intergenic | 35.0% | |
| CTATGCTTCATGAATTTGGT+GGG | + | chr5.1:63821067-63821086 | MS.gene061191:CDS | 35.0% | |
| CTCTTTCAAACAGTCTCATA+AGG | + | chr5.1:63821365-63821384 | MS.gene061191:intron | 35.0% | |
| CTTGTACTGTCACTAAAAGA+TGG | + | chr5.1:63822716-63822735 | MS.gene061191:CDS | 35.0% | |
| GCAAAGGTAACCAGATATAA+TGG | - | chr5.1:63823970-63823989 | None:intergenic | 35.0% | |
| GCTTATGTTCTTGGATATTC+AGG | + | chr5.1:63820955-63820974 | MS.gene061191:CDS | 35.0% | |
| TATGCTTGGTTAATTCAGTG+TGG | + | chr5.1:63823608-63823627 | MS.gene061191:intron | 35.0% | |
| TGAATCCAAACAAAAACTCC+AGG | - | chr5.1:63823822-63823841 | None:intergenic | 35.0% | |
| TGAATGCACAAATTGACATC+AGG | - | chr5.1:63822300-63822319 | None:intergenic | 35.0% | |
| TGCAATGACTGATTGAAGAA+AGG | - | chr5.1:63824085-63824104 | None:intergenic | 35.0% | |
| TTATATCTGGTTACCTTTGC+AGG | + | chr5.1:63823970-63823989 | MS.gene061191:CDS | 35.0% | |
| TTCTTGAATTAGGACCTGTT+TGG | - | chr5.1:63821431-63821450 | None:intergenic | 35.0% | |
| ! | AAACCTTTTCCCATTAGATG+AGG | - | chr5.1:63822385-63822404 | None:intergenic | 35.0% |
| ! | TTCATTTTCTCTGCTTACCA+AGG | + | chr5.1:63823040-63823059 | MS.gene061191:intron | 35.0% |
| ! | TTCTTCCTGGAGTTTTTGTT+TGG | + | chr5.1:63823814-63823833 | MS.gene061191:intron | 35.0% |
| !! | AATTAATTACAGAGGCACCA+GGG | - | chr5.1:63822852-63822871 | None:intergenic | 35.0% |
| !! | AGGTACTGAATTGGTTTCTA+CGG | + | chr5.1:63821720-63821739 | MS.gene061191:intron | 35.0% |
| !! | CAATTGCTTTTCACTATGCT+TGG | + | chr5.1:63823594-63823613 | MS.gene061191:intron | 35.0% |
| !! | GCAATATGTAGGTACTGAAT+TGG | + | chr5.1:63821711-63821730 | MS.gene061191:intron | 35.0% |
| !! | TTGTTGATTTGTTGTCATGC+AGG | + | chr5.1:63822526-63822545 | MS.gene061191:intron | 35.0% |
| ACTAACCTGCTAAGGATTCT+GGG | + | chr5.1:63822217-63822236 | MS.gene061191:intron | 40.0% | |
| AGACTGTTTGAAAGAGCTCA+TGG | - | chr5.1:63821361-63821380 | None:intergenic | 40.0% | |
| ATAATGTCAAGGGTCCAATC+TGG | + | chr5.1:63824034-63824053 | MS.gene061191:CDS | 40.0% | |
| ATGTTCAGCCTAGAGATAGA+GGG | - | chr5.1:63823005-63823024 | None:intergenic | 40.0% | |
| ATTAGATACCGTGATCTTGC+TGG | + | chr5.1:63821099-63821118 | MS.gene061191:CDS | 40.0% | |
| ATTCCAAGAGCTGAAAGATG+AGG | - | chr5.1:63822647-63822666 | None:intergenic | 40.0% | |
| ATTCCTCATCTTTCAGCTCT+TGG | + | chr5.1:63822641-63822660 | MS.gene061191:CDS | 40.0% | |
| CAGCTGAAATGCTACATACA+AGG | - | chr5.1:63823153-63823172 | None:intergenic | 40.0% | |
| CCAGCTATGGCAATAAAATG+TGG | - | chr5.1:63822593-63822612 | None:intergenic | 40.0% | |
| GAGCTCATGGAAACATAGTA+TGG | - | chr5.1:63821348-63821367 | None:intergenic | 40.0% | |
| GCTATGCTTCATGAATTTGG+TGG | + | chr5.1:63821066-63821085 | MS.gene061191:CDS | 40.0% | |
| GTGCTATGACAATATATGCG+AGG | - | chr5.1:63822697-63822716 | None:intergenic | 40.0% | |
| TAATGTCAAGGGTCCAATCT+GGG | + | chr5.1:63824035-63824054 | MS.gene061191:CDS | 40.0% | |
| TCATCATTCCCTCTATCTCT+AGG | + | chr5.1:63822994-63823013 | MS.gene061191:intron | 40.0% | |
| TGACTGCACAAATTGAGATC+AGG | - | chr5.1:63822458-63822477 | None:intergenic | 40.0% | |
| TGAGATACAGGTATGGTTCA+AGG | + | chr5.1:63823783-63823802 | MS.gene061191:intron | 40.0% | |
| TGGAGTTCTGCCATTATATC+TGG | + | chr5.1:63823957-63823976 | MS.gene061191:CDS | 40.0% | |
| TGGATATTCAGGGACCATTA+TGG | + | chr5.1:63820966-63820985 | MS.gene061191:CDS | 40.0% | |
| TTGAACCATACCTGTATCTC+AGG | - | chr5.1:63823784-63823803 | None:intergenic | 40.0% | |
| TTGATCCGACCTCATCTAAT+GGG | + | chr5.1:63822373-63822392 | MS.gene061191:intron | 40.0% | |
| TTTGATCCGACCTCATCTAA+TGG | + | chr5.1:63822372-63822391 | MS.gene061191:intron | 40.0% | |
| ! | CCACATTTTATTGCCATAGC+TGG | + | chr5.1:63822590-63822609 | MS.gene061191:CDS | 40.0% |
| ! | CTTTTCCCATTAGATGAGGT+CGG | - | chr5.1:63822381-63822400 | None:intergenic | 40.0% |
| ! | GAAAAGCATATTGCCTCACA+TGG | + | chr5.1:63821998-63822017 | MS.gene061191:CDS | 40.0% |
| ! | TTACCTTGTTGTGAAGGCTA+GGG | + | chr5.1:63823450-63823469 | MS.gene061191:intron | 40.0% |
| ! | TTTACCTTGTTGTGAAGGCT+AGG | + | chr5.1:63823449-63823468 | MS.gene061191:intron | 40.0% |
| !! | ATACTTGGTTTTCTGTTCCC+TGG | + | chr5.1:63822832-63822851 | MS.gene061191:intron | 40.0% |
| !! | ATATAGTTCGACTCGGCTAT+CGG | + | chr5.1:63823484-63823503 | MS.gene061191:intron | 40.0% |
| !! | ATTGGCTACATCATTTTGGC+TGG | + | chr5.1:63822054-63822073 | MS.gene061191:CDS | 40.0% |
| !! | CAATTAATTACAGAGGCACC+AGG | - | chr5.1:63822853-63822872 | None:intergenic | 40.0% |
| !! | TTGTGATTTTGGTCTTCTGC+TGG | + | chr5.1:63823080-63823099 | MS.gene061191:intron | 40.0% |
| ACAAAATGACGCGACAAGCA+AGG | - | chr5.1:63821923-63821942 | None:intergenic | 45.0% | |
| ACTACTCGTTCAGAGAAGTC+AGG | - | chr5.1:63823527-63823546 | None:intergenic | 45.0% | |
| AGGAATGCTTCCTGAGATAC+AGG | + | chr5.1:63823771-63823790 | MS.gene061191:CDS | 45.0% | |
| AGGGACCATTATGGTTCCTT+TGG | + | chr5.1:63820975-63820994 | MS.gene061191:CDS | 45.0% | |
| ATAAGCCCAGTATCCTGCAA+AGG | - | chr5.1:63823986-63824005 | None:intergenic | 45.0% | |
| CCAACCCAAAGGAACCATAA+TGG | - | chr5.1:63820983-63821002 | None:intergenic | 45.0% | |
| CCATTATGGTTCCTTTGGGT+TGG | + | chr5.1:63820980-63820999 | MS.gene061191:CDS | 45.0% | |
| CGACCTCATCTAATGGGAAA+AGG | + | chr5.1:63822379-63822398 | MS.gene061191:intron | 45.0% | |
| CTCGTGTTCGCATACAATAC+AGG | + | chr5.1:63823751-63823770 | MS.gene061191:CDS | 45.0% | |
| CTGCACAAATTGAGATCAGG+AGG | - | chr5.1:63822455-63822474 | None:intergenic | 45.0% | |
| CTTATTTCCACAAGCTCTCG+AGG | - | chr5.1:63821303-63821322 | None:intergenic | 45.0% | |
| GACTAACCTGCTAAGGATTC+TGG | + | chr5.1:63822216-63822235 | MS.gene061191:intron | 45.0% | |
| GATGTTCAGCCTAGAGATAG+AGG | - | chr5.1:63823006-63823025 | None:intergenic | 45.0% | |
| GCTCGAGATTATAGTGTTCC+AGG | + | chr5.1:63823682-63823701 | MS.gene061191:CDS | 45.0% | |
| GGAACACTATAATCTCGAGC+TGG | - | chr5.1:63823682-63823701 | None:intergenic | 45.0% | |
| GGGACCATTATGGTTCCTTT+GGG | + | chr5.1:63820976-63820995 | MS.gene061191:CDS | 45.0% | |
| GGTTACCTTTGCAGGATACT+GGG | + | chr5.1:63823978-63823997 | MS.gene061191:CDS | 45.0% | |
| GTTTCTCGACTAACCTGCTA+AGG | + | chr5.1:63822209-63822228 | MS.gene061191:intron | 45.0% | |
| TCAGCTCTTGGAATTTGGCT+CGG | + | chr5.1:63822653-63822672 | MS.gene061191:CDS | 45.0% | |
| TCCAATCTGGGTGAAAGTTG+TGG | + | chr5.1:63824047-63824066 | MS.gene061191:CDS | 45.0% | |
| TGCTTCCTGAGATACAGGTA+TGG | + | chr5.1:63823776-63823795 | MS.gene061191:intron | 45.0% | |
| TGGTTACCTTTGCAGGATAC+TGG | + | chr5.1:63823977-63823996 | MS.gene061191:CDS | 45.0% | |
| TTGTCTGATCGTCGCCTATT+AGG | - | chr5.1:63823890-63823909 | None:intergenic | 45.0% | |
| TTTGCAGGATACTGGGCTTA+TGG | + | chr5.1:63823985-63824004 | MS.gene061191:CDS | 45.0% | |
| ! | TTTGGCTGGTTCAGCTTTGA+AGG | + | chr5.1:63822068-63822087 | MS.gene061191:CDS | 45.0% |
| !! | ATGGTTCCTTTGGGTTGGAT+AGG | + | chr5.1:63820985-63821004 | MS.gene061191:CDS | 45.0% |
| !! | GAAGTCAGGAAAGTGCTGAT+AGG | - | chr5.1:63823513-63823532 | None:intergenic | 45.0% |
| !! | TATAGTTCGACTCGGCTATC+GGG | + | chr5.1:63823485-63823504 | MS.gene061191:intron | 45.0% |
| ACACCACCTATCCAACCCAA+AGG | - | chr5.1:63820994-63821013 | None:intergenic | 50.0% | |
| CAAGACCCAGAATCCTTAGC+AGG | - | chr5.1:63822225-63822244 | None:intergenic | 50.0% | |
| CATACTGCAGAGTCCATGTG+AGG | - | chr5.1:63822014-63822033 | None:intergenic | 50.0% | |
| GCCACAACTTTCACCCAGAT+TGG | - | chr5.1:63824051-63824070 | None:intergenic | 50.0% | |
| GGTCTTCTGCTGGTATTCAG+AGG | + | chr5.1:63823090-63823109 | MS.gene061191:intron | 50.0% | |
| TGCACACACAAGTCCAGCTA+TGG | - | chr5.1:63822606-63822625 | None:intergenic | 50.0% | |
| ! | GTGGGGTTTGTGTTGACAAC+AGG | + | chr5.1:63820922-63820941 | MS.gene061191:CDS | 50.0% |
| !! | GGTTGGATAGGTGGTGTTGT+TGG | + | chr5.1:63820997-63821016 | MS.gene061191:CDS | 50.0% |
| !! | GTTCCTTTGGGTTGGATAGG+TGG | + | chr5.1:63820988-63821007 | MS.gene061191:CDS | 50.0% |
| ! | AAGCTAGCCTCGAGAGCTTG+TGG | + | chr5.1:63821293-63821312 | MS.gene061191:intron | 55.0% |
| ! | GAGCCCTAGCCTTCACAACA+AGG | - | chr5.1:63823456-63823475 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 63820908 | 63824110 | 63820908 | ID=MS.gene061191 |
| chr5.1 | mRNA | 63820908 | 63824110 | 63820908 | ID=MS.gene061191.t1;Parent=MS.gene061191 |
| chr5.1 | exon | 63820908 | 63821132 | 63820908 | ID=MS.gene061191.t1.exon1;Parent=MS.gene061191.t1 |
| chr5.1 | CDS | 63820908 | 63821132 | 63820908 | ID=cds.MS.gene061191.t1;Parent=MS.gene061191.t1 |
| chr5.1 | exon | 63821995 | 63822089 | 63821995 | ID=MS.gene061191.t1.exon2;Parent=MS.gene061191.t1 |
| chr5.1 | CDS | 63821995 | 63822089 | 63821995 | ID=cds.MS.gene061191.t1;Parent=MS.gene061191.t1 |
| chr5.1 | exon | 63822548 | 63822737 | 63822548 | ID=MS.gene061191.t1.exon3;Parent=MS.gene061191.t1 |
| chr5.1 | CDS | 63822548 | 63822737 | 63822548 | ID=cds.MS.gene061191.t1;Parent=MS.gene061191.t1 |
| chr5.1 | exon | 63823668 | 63823792 | 63823668 | ID=MS.gene061191.t1.exon4;Parent=MS.gene061191.t1 |
| chr5.1 | CDS | 63823668 | 63823792 | 63823668 | ID=cds.MS.gene061191.t1;Parent=MS.gene061191.t1 |
| chr5.1 | exon | 63823895 | 63824110 | 63823895 | ID=MS.gene061191.t1.exon5;Parent=MS.gene061191.t1 |
| chr5.1 | CDS | 63823895 | 63824110 | 63823895 | ID=cds.MS.gene061191.t1;Parent=MS.gene061191.t1 |
| Gene Sequence |
| Protein sequence |
