Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56964.t1 | AES91128.2 | 98.9 | 358 | 3 | 1 | 1 | 357 | 1 | 358 | 2.50E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56964.t1 | Q8LSZ4 | 55.8 | 364 | 133 | 9 | 5 | 355 | 22 | 370 | 2.0e-80 | 300.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56964.t1 | G7JNS6 | 98.9 | 358 | 3 | 1 | 1 | 357 | 1 | 358 | 1.8e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56964.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059919 | MS.gene56964 | 0.810989 | 8.76E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56964.t1 | MTR_4g106540 | 99.162 | 358 | 2 | 1 | 1 | 357 | 1 | 358 | 0.0 | 733 |
| MS.gene56964.t1 | MTR_4g106540 | 98.880 | 357 | 3 | 1 | 1 | 356 | 1 | 357 | 0.0 | 729 |
| MS.gene56964.t1 | MTR_4g106540 | 97.253 | 364 | 3 | 2 | 1 | 357 | 1 | 364 | 0.0 | 724 |
| MS.gene56964.t1 | MTR_4g106540 | 98.820 | 339 | 3 | 1 | 1 | 338 | 1 | 339 | 0.0 | 686 |
| MS.gene56964.t1 | MTR_4g106540 | 96.812 | 345 | 4 | 2 | 1 | 338 | 1 | 345 | 0.0 | 678 |
| MS.gene56964.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 1.03e-11 | 65.5 |
| MS.gene56964.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 1.25e-11 | 65.5 |
| MS.gene56964.t1 | MTR_4g052000 | 44.776 | 67 | 37 | 0 | 17 | 83 | 138 | 204 | 1.36e-11 | 65.9 |
| MS.gene56964.t1 | MTR_1g105110 | 44.776 | 67 | 37 | 0 | 17 | 83 | 142 | 208 | 3.22e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56964.t1 | AT3G48160 | 54.318 | 359 | 134 | 10 | 12 | 356 | 29 | 371 | 7.19e-113 | 333 |
| MS.gene56964.t1 | AT3G48160 | 54.190 | 358 | 134 | 10 | 12 | 355 | 29 | 370 | 2.78e-111 | 330 |
| MS.gene56964.t1 | AT3G01330 | 47.813 | 343 | 150 | 5 | 13 | 355 | 17 | 330 | 3.19e-96 | 290 |
| MS.gene56964.t1 | AT5G14960 | 41.808 | 354 | 166 | 8 | 13 | 354 | 9 | 334 | 2.81e-81 | 252 |
| MS.gene56964.t1 | AT5G14960 | 37.915 | 211 | 114 | 6 | 154 | 354 | 38 | 241 | 6.62e-35 | 129 |
| MS.gene56964.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.43e-11 | 64.3 |
| MS.gene56964.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.65e-11 | 64.3 |
Find 84 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACGATGTTCGTTTAAT+TGG | 0.211016 | 8.1:-19264055 | MS.gene56964:CDS |
| CACCCTGACTTCCAGTGGTT+TGG | 0.211662 | 8.1:+19263373 | None:intergenic |
| GGCAATTCCTGTTGCTTTAC+AGG | 0.216414 | 8.1:-19263707 | MS.gene56964:CDS |
| TTCAGGTGGCTAGGCTTAAA+AGG | 0.224076 | 8.1:-19261699 | MS.gene56964:CDS |
| GACGATGCTGCCGCCAAATT+AGG | 0.253633 | 8.1:-19264028 | MS.gene56964:intron |
| GTAATAATGAATACCTAATT+TGG | 0.256592 | 8.1:+19264015 | None:intergenic |
| TTTCCAGGTATACTGATTCT+TGG | 0.296038 | 8.1:+19263738 | None:intergenic |
| AGTATATTACCTTCTCAATA+AGG | 0.302257 | 8.1:+19261881 | None:intergenic |
| ACCCTGACTTCCAGTGGTTT+GGG | 0.311184 | 8.1:+19263374 | None:intergenic |
| CTATGATATTGTCAATGTTC+TGG | 0.330833 | 8.1:-19263898 | MS.gene56964:CDS |
| TACCTTCTCAATAAGGTTCA+TGG | 0.335894 | 8.1:+19261888 | None:intergenic |
| AATTGCCGCAAAACCTTTCC+AGG | 0.340573 | 8.1:+19263723 | None:intergenic |
| ACTTCGGCTAACTATCAATT+TGG | 0.365718 | 8.1:-19261477 | MS.gene56964:CDS |
| TGTTGCTTTACAGGAGCTTA+AGG | 0.369256 | 8.1:-19263698 | MS.gene56964:intron |
| ATTCTCAGAGCTTCCAGCTT+TGG | 0.369624 | 8.1:+19261431 | None:intergenic |
| ATCCCAAACCACTGGAAGTC+AGG | 0.370120 | 8.1:-19263376 | MS.gene56964:CDS |
| ATTCTGACTTCCAGTGGGTT+GGG | 0.370825 | 8.1:+19263341 | None:intergenic |
| CATTCTGACTTCCAGTGGGT+TGG | 0.380743 | 8.1:+19263340 | None:intergenic |
| GAACAAGTCTGTTCTATTCC+TGG | 0.392480 | 8.1:+19261584 | None:intergenic |
| ATGAAAATGCTTAATTGCCT+TGG | 0.399936 | 8.1:+19261346 | None:intergenic |
| AAGTGAAGCAGGTGCATGAC+TGG | 0.407996 | 8.1:-19261407 | MS.gene56964:CDS |
| ACTCACCTTCACATCTTCAT+TGG | 0.412295 | 8.1:+19263513 | None:intergenic |
| TCAATGTTCTGGAAAGCATC+GGG | 0.428073 | 8.1:-19263887 | MS.gene56964:CDS |
| GCACATTTGCAATATCATAA+AGG | 0.434271 | 8.1:+19261917 | None:intergenic |
| TTAAGCTCCTGTAAAGCAAC+AGG | 0.443519 | 8.1:+19263700 | None:intergenic |
| ATACAAGAAAACCAGCATTC+AGG | 0.443643 | 8.1:-19261716 | MS.gene56964:CDS |
| CTGGCCTTGCAGCAAAAGTT+AGG | 0.448266 | 8.1:-19261942 | MS.gene56964:intron |
| AAGACAATGGAAAATGATAG+TGG | 0.463413 | 8.1:-19261537 | MS.gene56964:CDS |
| GATACAAAGGCAGGAGCAAA+AGG | 0.470114 | 8.1:+19261453 | None:intergenic |
| AAATGATAGTGGGCTATGTC+AGG | 0.475308 | 8.1:-19261526 | MS.gene56964:CDS |
| GAGTCTAGGAAAAGGGCGTT+TGG | 0.479876 | 8.1:-19261633 | MS.gene56964:CDS |
| AACAAAACGAGTCTAGGAAA+AGG | 0.489129 | 8.1:-19261641 | MS.gene56964:CDS |
| AAGCCTAGCCACCTGAATGC+TGG | 0.489317 | 8.1:+19261705 | None:intergenic |
| CTCTGAGAATAAAGTGAAGC+AGG | 0.496045 | 8.1:-19261418 | MS.gene56964:CDS |
| ACACTTACTTGGTGCATAAG+AGG | 0.500577 | 8.1:+19264171 | None:intergenic |
| GGTATCGGATGAAGAGGATG+AGG | 0.500912 | 8.1:-19263409 | MS.gene56964:CDS |
| CCTGCCTTTGTATCCAAAGC+TGG | 0.506957 | 8.1:-19261444 | MS.gene56964:CDS |
| GAATAGAACAGACTTGTTCA+TGG | 0.511403 | 8.1:-19261580 | MS.gene56964:CDS |
| ATTCAAAACAAAACGAGTCT+AGG | 0.513914 | 8.1:-19261647 | MS.gene56964:CDS |
| ACAAAACGAGTCTAGGAAAA+GGG | 0.522975 | 8.1:-19261640 | MS.gene56964:CDS |
| ACAACCTTGCTGCATCATCA+AGG | 0.524403 | 8.1:+19262089 | None:intergenic |
| AAGCCAAGAATCAGTATACC+TGG | 0.526713 | 8.1:-19263741 | MS.gene56964:CDS |
| ACTTGGTGCATAAGAGGCCG+AGG | 0.537885 | 8.1:+19264177 | None:intergenic |
| GTCAATGTTCTGGAAAGCAT+CGG | 0.539394 | 8.1:-19263888 | MS.gene56964:CDS |
| TCACAAACATAAGCTTTGCC+AGG | 0.545422 | 8.1:-19261602 | MS.gene56964:CDS |
| AAGAATCAGTATACCTGGAA+AGG | 0.546799 | 8.1:-19263736 | MS.gene56964:CDS |
| GATGCAGCAAGGTTGTTGCT+TGG | 0.550005 | 8.1:-19262082 | MS.gene56964:CDS |
| CCAGCTTTGGATACAAAGGC+AGG | 0.550221 | 8.1:+19261444 | None:intergenic |
| ATCGGAGGAAGAAGCAGCCA+TGG | 0.550392 | 8.1:+19264241 | None:intergenic |
| ATTGTCATTCTGACTTCCAG+TGG | 0.553060 | 8.1:+19263335 | None:intergenic |
| CTCCATGAACCTTATTGAGA+AGG | 0.554046 | 8.1:-19261890 | MS.gene56964:intron |
| AAACCAGCATTCAGGTGGCT+AGG | 0.559723 | 8.1:-19261708 | MS.gene56964:CDS |
| TTGTCATTCTGACTTCCAGT+GGG | 0.561775 | 8.1:+19263336 | None:intergenic |
| TCAGGTGGCTAGGCTTAAAA+GGG | 0.561931 | 8.1:-19261698 | MS.gene56964:CDS |
| AATCTCAATTCTTCACAAGA+AGG | 0.561963 | 8.1:-19263538 | MS.gene56964:CDS |
| TCCCAAACCACTGGAAGTCA+GGG | 0.581818 | 8.1:-19263375 | MS.gene56964:CDS |
| TTTGTTTACGGTCGTAAGTG+TGG | 0.582087 | 8.1:+19264204 | None:intergenic |
| ACAAGGCATAAAACAGACTT+CGG | 0.583796 | 8.1:-19261493 | MS.gene56964:CDS |
| TGATTCACCCTGACTTCCAG+TGG | 0.587552 | 8.1:+19263368 | None:intergenic |
| ATAATGAATACCTAATTTGG+CGG | 0.587773 | 8.1:+19264018 | None:intergenic |
| GCTTCCAGCTTTGGATACAA+AGG | 0.589316 | 8.1:+19261440 | None:intergenic |
| GTTCAGGCGTTGAGAGAAGA+CGG | 0.591607 | 8.1:-19263923 | MS.gene56964:intron |
| AAAAGGGAAGACATTGAATG+AGG | 0.592429 | 8.1:-19261682 | MS.gene56964:CDS |
| AGTGAAGCAGGTGCATGACT+GGG | 0.592595 | 8.1:-19261406 | MS.gene56964:CDS |
| GATTTAGGTATCGGATGAAG+AGG | 0.593110 | 8.1:-19263415 | MS.gene56964:intron |
| AATAGAACAGACTTGTTCAT+GGG | 0.597678 | 8.1:-19261579 | MS.gene56964:CDS |
| GTGGTGTCGTGAAGGAGGAT+CGG | 0.598361 | 8.1:+19264223 | None:intergenic |
| GAATTGTTATCCCAAACCAC+TGG | 0.601423 | 8.1:-19263384 | MS.gene56964:CDS |
| TCGTAAGTGTGGTGTCGTGA+AGG | 0.601836 | 8.1:+19264215 | None:intergenic |
| GAATCATTATCCCAACCCAC+TGG | 0.603753 | 8.1:-19263351 | MS.gene56964:CDS |
| CAACCTTGCTGCATCATCAA+GGG | 0.604844 | 8.1:+19262090 | None:intergenic |
| CTTGGTGCATAAGAGGCCGA+GGG | 0.608163 | 8.1:+19264178 | None:intergenic |
| AGACAATGGAAAATGATAGT+GGG | 0.608266 | 8.1:-19261536 | MS.gene56964:CDS |
| TAAGTGTGGTGTCGTGAAGG+AGG | 0.623409 | 8.1:+19264218 | None:intergenic |
| CTTTAAGAAGCAAAAGACAA+TGG | 0.627305 | 8.1:-19261550 | MS.gene56964:CDS |
| CAATGTTCTGGAAAGCATCG+GGG | 0.639451 | 8.1:-19263886 | MS.gene56964:intron |
| CAAGAAAACCAGCATTCAGG+TGG | 0.647844 | 8.1:-19261713 | MS.gene56964:CDS |
| CTTCTCAATAAGGTTCATGG+AGG | 0.657302 | 8.1:+19261891 | None:intergenic |
| TGCCCTCAGTATCAAAACCA+AGG | 0.661299 | 8.1:-19261363 | MS.gene56964:CDS |
| GTGTCGTGAAGGAGGATCGG+AGG | 0.668512 | 8.1:+19264226 | None:intergenic |
| AGAACAGACTTGTTCATGGG+TGG | 0.672206 | 8.1:-19261576 | MS.gene56964:CDS |
| AGGTGCCAATGAAGATGTGA+AGG | 0.673625 | 8.1:-19263518 | MS.gene56964:intron |
| TGTCAGGAAGATGTGAAACA+AGG | 0.679974 | 8.1:-19261510 | MS.gene56964:CDS |
| TATCCCTTGATGATGCAGCA+AGG | 0.728015 | 8.1:-19262093 | MS.gene56964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAAAAAAAAAAGG+TGG | + | chr8.1:19261773-19261792 | None:intergenic | 10.0% |
| !! | AATTAATAAAAAAAAAAGGT+GGG | + | chr8.1:19261772-19261791 | None:intergenic | 10.0% |
| !! | TTATAAAATTCAATAAACAA+TGG | + | chr8.1:19263217-19263236 | None:intergenic | 10.0% |
| !!! | GATATTTTTAAATCATTAAA+AGG | + | chr8.1:19262538-19262557 | None:intergenic | 10.0% |
| !!! | GTTTGTTTTTTTTTTTTTTT+AGG | - | chr8.1:19261819-19261838 | MS.gene56964:intron | 10.0% |
| !!! | TTTATTTTTCTTCAAATTTT+AGG | - | chr8.1:19262500-19262519 | MS.gene56964:intron | 10.0% |
| !!! | TTTTATTAATTTTTGTTCAT+CGG | - | chr8.1:19261781-19261800 | MS.gene56964:intron | 10.0% |
| !! | TTTAATTAATTTCGTGATTT+AGG | - | chr8.1:19262165-19262184 | MS.gene56964:intron | 15.0% |
| !!! | AATATAAAATGAAAAGTGTA+AGG | + | chr8.1:19263740-19263759 | None:intergenic | 15.0% |
| !!! | AATTGTTTTGATTTTGTAAT+GGG | - | chr8.1:19262009-19262028 | MS.gene56964:intron | 15.0% |
| !!! | AATTTTATGACAAGTATAAT+TGG | - | chr8.1:19262127-19262146 | MS.gene56964:intron | 15.0% |
| !!! | TAATTGTTTTGATTTTGTAA+TGG | - | chr8.1:19262008-19262027 | MS.gene56964:intron | 15.0% |
| !!! | TCACTAATTATTTATTGATT+CGG | - | chr8.1:19261484-19261503 | MS.gene56964:CDS | 15.0% |
| !! | GTAATAATGAATACCTAATT+TGG | + | chr8.1:19261583-19261602 | None:intergenic | 20.0% |
| !! | TTAATATCATATGATACTGT+TGG | - | chr8.1:19263107-19263126 | MS.gene56964:intron | 20.0% |
| !!! | AATGGTAACTTCATTATTTT+TGG | - | chr8.1:19262319-19262338 | MS.gene56964:intron | 20.0% |
| !!! | ACAAGTATAATTGGTTTATT+AGG | - | chr8.1:19262136-19262155 | MS.gene56964:intron | 20.0% |
| !!! | ATTTTTAAGAAAAACAAGAG+TGG | - | chr8.1:19262571-19262590 | MS.gene56964:intron | 20.0% |
| !!! | CAAGTATAATTGGTTTATTA+GGG | - | chr8.1:19262137-19262156 | MS.gene56964:intron | 20.0% |
| !!! | TCCTTCTTAATTTAATTTGT+GGG | - | chr8.1:19261944-19261963 | MS.gene56964:intron | 20.0% |
| !!! | TTCCTTCTTAATTTAATTTG+TGG | - | chr8.1:19261943-19261962 | MS.gene56964:intron | 20.0% |
| !!! | TTGCATAAACTTTTAAGTAT+CGG | + | chr8.1:19263186-19263205 | None:intergenic | 20.0% |
| !!! | TTTTATAATATTGGAGTAGT+AGG | - | chr8.1:19263229-19263248 | MS.gene56964:intron | 20.0% |
| ! | AAAAAGACATAATACAGGTA+TGG | + | chr8.1:19262952-19262971 | None:intergenic | 25.0% |
| ! | AACAGTTATTAATGATGTTC+AGG | - | chr8.1:19261656-19261675 | MS.gene56964:CDS | 25.0% |
| ! | ACATGAGTGAACAAAAATTA+AGG | + | chr8.1:19261748-19261767 | None:intergenic | 25.0% |
| ! | ACGAAAACAAACAAACAAAT+TGG | + | chr8.1:19263590-19263609 | None:intergenic | 25.0% |
| ! | AGTATATTACCTTCTCAATA+AGG | + | chr8.1:19263717-19263736 | None:intergenic | 25.0% |
| ! | ATAAAGAAATCAATGCAAAG+AGG | + | chr8.1:19263816-19263835 | None:intergenic | 25.0% |
| ! | ATAATGAATACCTAATTTGG+CGG | + | chr8.1:19261580-19261599 | None:intergenic | 25.0% |
| ! | ATTAAAGACATAAATCAGCT+TGG | + | chr8.1:19263410-19263429 | None:intergenic | 25.0% |
| ! | TAATTTCGTGATTTAGGTAT+CGG | - | chr8.1:19262171-19262190 | MS.gene56964:intron | 25.0% |
| ! | TCCCACAAATTAAATTAAGA+AGG | + | chr8.1:19261948-19261967 | None:intergenic | 25.0% |
| ! | TGAACATCATTAATAACTGT+TGG | + | chr8.1:19261657-19261676 | None:intergenic | 25.0% |
| ! | TTAACTAAACTATCATTCTC+TGG | + | chr8.1:19263154-19263173 | None:intergenic | 25.0% |
| ! | TTATATTTACCCAGCAAAAT+TGG | + | chr8.1:19262800-19262819 | None:intergenic | 25.0% |
| !! | GGTGATAATTTGAATTTTTG+AGG | - | chr8.1:19262592-19262611 | MS.gene56964:intron | 25.0% |
| !! | TAGGATGTTTTCTTTTCTTA+GGG | - | chr8.1:19263049-19263068 | MS.gene56964:intron | 25.0% |
| !! | TTAGGATGTTTTCTTTTCTT+AGG | - | chr8.1:19263048-19263067 | MS.gene56964:intron | 25.0% |
| !!! | ATAGCAGAATTTTTGAAACA+TGG | - | chr8.1:19262625-19262644 | MS.gene56964:intron | 25.0% |
| !!! | ATCAGATTGTTCAAGTTTTT+AGG | - | chr8.1:19263030-19263049 | MS.gene56964:intron | 25.0% |
| !!! | TAGCAGAATTTTTGAAACAT+GGG | - | chr8.1:19262626-19262645 | MS.gene56964:intron | 25.0% |
| !!! | TGATTTTGTAATGGGATTTT+AGG | - | chr8.1:19262017-19262036 | MS.gene56964:intron | 25.0% |
| !!! | TTACCATTTTTCAAAGATCT+GGG | + | chr8.1:19262307-19262326 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTCGAATGTAAA+TGG | + | chr8.1:19263084-19263103 | None:intergenic | 25.0% |
| AAAGACGATGTTCGTTTAAT+TGG | - | chr8.1:19261540-19261559 | MS.gene56964:CDS | 30.0% | |
| AACATATCAGATATACAGCA+TGG | + | chr8.1:19263435-19263454 | None:intergenic | 30.0% | |
| AAGACAATGGAAAATGATAG+TGG | - | chr8.1:19264058-19264077 | MS.gene56964:CDS | 30.0% | |
| AATCTCAATTCTTCACAAGA+AGG | - | chr8.1:19262057-19262076 | MS.gene56964:CDS | 30.0% | |
| AGAAGAATAGACTGTAAATC+TGG | + | chr8.1:19262454-19262473 | None:intergenic | 30.0% | |
| AGACAATGGAAAATGATAGT+GGG | - | chr8.1:19264059-19264078 | MS.gene56964:CDS | 30.0% | |
| ATTCAAAACAAAACGAGTCT+AGG | - | chr8.1:19263948-19263967 | MS.gene56964:intron | 30.0% | |
| CTATGATATTGTCAATGTTC+TGG | - | chr8.1:19261697-19261716 | MS.gene56964:CDS | 30.0% | |
| GAGCAAAAAAGACATAATAC+AGG | + | chr8.1:19262957-19262976 | None:intergenic | 30.0% | |
| GCACATTTGCAATATCATAA+AGG | + | chr8.1:19263681-19263700 | None:intergenic | 30.0% | |
| GTATTAATGTGTGTAGATTG+AGG | + | chr8.1:19262839-19262858 | None:intergenic | 30.0% | |
| TACACACATTAATACGTTGT+GGG | - | chr8.1:19262844-19262863 | MS.gene56964:intron | 30.0% | |
| TACCCATCTTTAGTTAACTT+GGG | + | chr8.1:19262773-19262792 | None:intergenic | 30.0% | |
| TGAACAATCTGATGAGAATT+GGG | + | chr8.1:19263023-19263042 | None:intergenic | 30.0% | |
| TGCAATTCGCAAAATAAAGT+TGG | + | chr8.1:19262684-19262703 | None:intergenic | 30.0% | |
| TTGAACAATCTGATGAGAAT+TGG | + | chr8.1:19263024-19263043 | None:intergenic | 30.0% | |
| TTTCAAAGATCTGGGAAAAA+TGG | + | chr8.1:19262299-19262318 | None:intergenic | 30.0% | |
| ! | AATAGAACAGACTTGTTCAT+GGG | - | chr8.1:19264016-19264035 | MS.gene56964:intron | 30.0% |
| ! | CGAAGTGTTTGTTTAGATTA+AGG | + | chr8.1:19262899-19262918 | None:intergenic | 30.0% |
| ! | CTTTAAGAAGCAAAAGACAA+TGG | - | chr8.1:19264045-19264064 | MS.gene56964:CDS | 30.0% |
| ! | TGTTTTCTTTTCTTAGGGTT+AGG | - | chr8.1:19263054-19263073 | MS.gene56964:intron | 30.0% |
| ! | TTTCCCAGATCTTTGAAAAA+TGG | - | chr8.1:19262301-19262320 | MS.gene56964:intron | 30.0% |
| ! | TTTTCTTGTATCTGTGGTAT+GGG | + | chr8.1:19263870-19263889 | None:intergenic | 30.0% |
| !! | GTTACCATTTTTCAAAGATC+TGG | + | chr8.1:19262308-19262327 | None:intergenic | 30.0% |
| !!! | GAATTTTTGAAACATGGGTT+TGG | - | chr8.1:19262631-19262650 | MS.gene56964:intron | 30.0% |
| AAAAGGGAAGACATTGAATG+AGG | - | chr8.1:19263913-19263932 | MS.gene56964:CDS | 35.0% | |
| AACAAAACGAGTCTAGGAAA+AGG | - | chr8.1:19263954-19263973 | MS.gene56964:intron | 35.0% | |
| AACCCCAAGTTAACTAAAGA+TGG | - | chr8.1:19262767-19262786 | MS.gene56964:intron | 35.0% | |
| AAGAATCAGTATACCTGGAA+AGG | - | chr8.1:19261859-19261878 | MS.gene56964:intron | 35.0% | |
| ACAAAACGAGTCTAGGAAAA+GGG | - | chr8.1:19263955-19263974 | MS.gene56964:intron | 35.0% | |
| ACAAGGCATAAAACAGACTT+CGG | - | chr8.1:19264102-19264121 | MS.gene56964:intron | 35.0% | |
| ACCCCAAGTTAACTAAAGAT+GGG | - | chr8.1:19262768-19262787 | MS.gene56964:intron | 35.0% | |
| ACTTCGGCTAACTATCAATT+TGG | - | chr8.1:19264118-19264137 | MS.gene56964:intron | 35.0% | |
| ATACAAGAAAACCAGCATTC+AGG | - | chr8.1:19263879-19263898 | MS.gene56964:intron | 35.0% | |
| ATCTGGGAAAAATGGAGTTA+GGG | + | chr8.1:19262291-19262310 | None:intergenic | 35.0% | |
| CTACACACATTAATACGTTG+TGG | - | chr8.1:19262843-19262862 | MS.gene56964:intron | 35.0% | |
| CTTGGAATGAACAAGAAACT+AGG | + | chr8.1:19263392-19263411 | None:intergenic | 35.0% | |
| GAAGAAGAGTAACACTTACT+TGG | + | chr8.1:19261438-19261457 | None:intergenic | 35.0% | |
| GTACCCATCTTTAGTTAACT+TGG | + | chr8.1:19262774-19262793 | None:intergenic | 35.0% | |
| TACCTTCTCAATAAGGTTCA+TGG | + | chr8.1:19263710-19263729 | None:intergenic | 35.0% | |
| TCAAATTGCAATCAGTGTCA+AGG | + | chr8.1:19263264-19263283 | None:intergenic | 35.0% | |
| TGCTGGGTAAATATAAGTTG+AGG | - | chr8.1:19262804-19262823 | MS.gene56964:intron | 35.0% | |
| ! | ACCCATCTTTAGTTAACTTG+GGG | + | chr8.1:19262772-19262791 | None:intergenic | 35.0% |
| ! | CTAATGTTTTGCAGACAGAA+GGG | - | chr8.1:19263300-19263319 | MS.gene56964:CDS | 35.0% |
| ! | CTGGGTAAATATAAGTTGAG+GGG | - | chr8.1:19262806-19262825 | MS.gene56964:intron | 35.0% |
| ! | GAATAGAACAGACTTGTTCA+TGG | - | chr8.1:19264015-19264034 | MS.gene56964:intron | 35.0% |
| ! | GCTGGGTAAATATAAGTTGA+GGG | - | chr8.1:19262805-19262824 | MS.gene56964:intron | 35.0% |
| ! | GTTTTCTTGTATCTGTGGTA+TGG | + | chr8.1:19263871-19263890 | None:intergenic | 35.0% |
| ! | TCTAATGTTTTGCAGACAGA+AGG | - | chr8.1:19263299-19263318 | MS.gene56964:CDS | 35.0% |
| ! | TGCTTGTGTTGTTATTGTTG+TGG | - | chr8.1:19262388-19262407 | MS.gene56964:intron | 35.0% |
| ! | TTGACACTGATTGCAATTTG+AGG | - | chr8.1:19263263-19263282 | MS.gene56964:intron | 35.0% |
| !! | CGTTGTGGGTTATAGTTTTA+AGG | - | chr8.1:19262858-19262877 | MS.gene56964:intron | 35.0% |
| !! | GATTTTAGGAAGAGGGTTTA+TGG | - | chr8.1:19262031-19262050 | MS.gene56964:intron | 35.0% |
| !! | GTAATGGGATTTTAGGAAGA+GGG | - | chr8.1:19262024-19262043 | MS.gene56964:intron | 35.0% |
| !! | TGTAATGGGATTTTAGGAAG+AGG | - | chr8.1:19262023-19262042 | MS.gene56964:intron | 35.0% |
| !! | TTTCCAGGTATACTGATTCT+TGG | + | chr8.1:19261860-19261879 | None:intergenic | 35.0% |
| AAGCCAAGAATCAGTATACC+TGG | - | chr8.1:19261854-19261873 | MS.gene56964:intron | 40.0% | |
| ACTCACCTTCACATCTTCAT+TGG | + | chr8.1:19262085-19262104 | None:intergenic | 40.0% | |
| AGACAGAAGGGAAAAATCTC+TGG | - | chr8.1:19263312-19263331 | MS.gene56964:CDS | 40.0% | |
| ATTGTCATTCTGACTTCCAG+TGG | + | chr8.1:19262263-19262282 | None:intergenic | 40.0% | |
| CAGCAACAGCAAAAAAACAC+AGG | + | chr8.1:19262370-19262389 | None:intergenic | 40.0% | |
| CTCCATGAACCTTATTGAGA+AGG | - | chr8.1:19263705-19263724 | MS.gene56964:CDS | 40.0% | |
| CTTCTCAATAAGGTTCATGG+AGG | + | chr8.1:19263707-19263726 | None:intergenic | 40.0% | |
| GAACAAGTCTGTTCTATTCC+TGG | + | chr8.1:19264014-19264033 | None:intergenic | 40.0% | |
| GAATTGTTATCCCAAACCAC+TGG | - | chr8.1:19262211-19262230 | MS.gene56964:intron | 40.0% | |
| GACCGTAAACAAAAATCCCT+CGG | - | chr8.1:19261401-19261420 | MS.gene56964:CDS | 40.0% | |
| GATCTGGGAAAAATGGAGTT+AGG | + | chr8.1:19262292-19262311 | None:intergenic | 40.0% | |
| TCACAAACATAAGCTTTGCC+AGG | - | chr8.1:19263993-19264012 | MS.gene56964:intron | 40.0% | |
| TGAGAATTGGGATTGTTCTG+AGG | + | chr8.1:19263011-19263030 | None:intergenic | 40.0% | |
| TGTCAGGAAGATGTGAAACA+AGG | - | chr8.1:19264085-19264104 | MS.gene56964:intron | 40.0% | |
| TTAAGCTCCTGTAAAGCAAC+AGG | + | chr8.1:19261898-19261917 | None:intergenic | 40.0% | |
| TTGTCATTCTGACTTCCAGT+GGG | + | chr8.1:19262262-19262281 | None:intergenic | 40.0% | |
| TTTGTTTACGGTCGTAAGTG+TGG | + | chr8.1:19261394-19261413 | None:intergenic | 40.0% | |
| ! | CTCTGAGAATAAAGTGAAGC+AGG | - | chr8.1:19264177-19264196 | MS.gene56964:intron | 40.0% |
| ! | GGGTACAATCCAATTTTGCT+GGG | - | chr8.1:19262788-19262807 | MS.gene56964:intron | 40.0% |
| ! | GTATACCTGGAAAGGTTTTG+CGG | - | chr8.1:19261867-19261886 | MS.gene56964:intron | 40.0% |
| ! | TGGGTACAATCCAATTTTGC+TGG | - | chr8.1:19262787-19262806 | MS.gene56964:intron | 40.0% |
| ! | TTTTCACTTACAGTCCCATC+TGG | - | chr8.1:19263634-19263653 | MS.gene56964:intron | 40.0% |
| !! | AAATGATAGTGGGCTATGTC+AGG | - | chr8.1:19264069-19264088 | MS.gene56964:CDS | 40.0% |
| !! | ACACTTACTTGGTGCATAAG+AGG | + | chr8.1:19261427-19261446 | None:intergenic | 40.0% |
| !! | GATTTAGGTATCGGATGAAG+AGG | - | chr8.1:19262180-19262199 | MS.gene56964:intron | 40.0% |
| !! | GTCAATGTTCTGGAAAGCAT+CGG | - | chr8.1:19261707-19261726 | MS.gene56964:CDS | 40.0% |
| !! | TCAATGTTCTGGAAAGCATC+GGG | - | chr8.1:19261708-19261727 | MS.gene56964:CDS | 40.0% |
| !! | TGTTGCTTTACAGGAGCTTA+AGG | - | chr8.1:19261897-19261916 | MS.gene56964:CDS | 40.0% |
| !!! | TGCCTTGGTTTTGATACTGA+GGG | + | chr8.1:19264237-19264256 | None:intergenic | 40.0% |
| !!! | TGCTGGTTTTCTTGTATCTG+TGG | + | chr8.1:19263876-19263895 | None:intergenic | 40.0% |
| !!! | TTGCCTTGGTTTTGATACTG+AGG | + | chr8.1:19264238-19264257 | None:intergenic | 40.0% |
| AATTGCCGCAAAACCTTTCC+AGG | + | chr8.1:19261875-19261894 | None:intergenic | 45.0% | |
| ACAACCTTGCTGCATCATCA+AGG | + | chr8.1:19263509-19263528 | None:intergenic | 45.0% | |
| AGGTGCCAATGAAGATGTGA+AGG | - | chr8.1:19262077-19262096 | MS.gene56964:CDS | 45.0% | |
| ATTCTCAGAGCTTCCAGCTT+TGG | + | chr8.1:19264167-19264186 | None:intergenic | 45.0% | |
| CAACCTTGCTGCATCATCAA+GGG | + | chr8.1:19263508-19263527 | None:intergenic | 45.0% | |
| CAAGAAAACCAGCATTCAGG+TGG | - | chr8.1:19263882-19263901 | MS.gene56964:intron | 45.0% | |
| GAATCATTATCCCAACCCAC+TGG | - | chr8.1:19262244-19262263 | MS.gene56964:CDS | 45.0% | |
| GATACAAAGGCAGGAGCAAA+AGG | + | chr8.1:19264145-19264164 | None:intergenic | 45.0% | |
| TCAGGTGGCTAGGCTTAAAA+GGG | - | chr8.1:19263897-19263916 | MS.gene56964:CDS | 45.0% | |
| TGCCCTCAGTATCAAAACCA+AGG | - | chr8.1:19264232-19264251 | MS.gene56964:CDS | 45.0% | |
| TTCAGGTGGCTAGGCTTAAA+AGG | - | chr8.1:19263896-19263915 | MS.gene56964:CDS | 45.0% | |
| ! | AGAACAGACTTGTTCATGGG+TGG | - | chr8.1:19264019-19264038 | MS.gene56964:intron | 45.0% |
| ! | ATTCTGACTTCCAGTGGGTT+GGG | + | chr8.1:19262257-19262276 | None:intergenic | 45.0% |
| !! | CAATGTTCTGGAAAGCATCG+GGG | - | chr8.1:19261709-19261728 | MS.gene56964:CDS | 45.0% |
| !! | GCTTCCAGCTTTGGATACAA+AGG | + | chr8.1:19264158-19264177 | None:intergenic | 45.0% |
| !! | GGCAATTCCTGTTGCTTTAC+AGG | - | chr8.1:19261888-19261907 | MS.gene56964:intron | 45.0% |
| !! | GGCCGAGGGATTTTTGTTTA+CGG | + | chr8.1:19261406-19261425 | None:intergenic | 45.0% |
| !! | TATCCCTTGATGATGCAGCA+AGG | - | chr8.1:19263502-19263521 | MS.gene56964:intron | 45.0% |
| !! | ATTAAAAAAAAAAAACAAAT+TGG | - | chr8.1:19261624-19261643 | MS.gene56964:CDS | 5.0% |
| !! | CAAAAATTAATAAAAAAAAA+AGG | + | chr8.1:19261776-19261795 | None:intergenic | 5.0% |
| !!! | TTTATTGAATTTTATAATAT+TGG | - | chr8.1:19263220-19263239 | MS.gene56964:intron | 5.0% |
| AAACCAGCATTCAGGTGGCT+AGG | - | chr8.1:19263887-19263906 | MS.gene56964:CDS | 50.0% | |
| AAGTGAAGCAGGTGCATGAC+TGG | - | chr8.1:19264188-19264207 | MS.gene56964:CDS | 50.0% | |
| ACCCTGACTTCCAGTGGTTT+GGG | + | chr8.1:19262224-19262243 | None:intergenic | 50.0% | |
| AGTGAAGCAGGTGCATGACT+GGG | - | chr8.1:19264189-19264208 | MS.gene56964:CDS | 50.0% | |
| ATCCCAAACCACTGGAAGTC+AGG | - | chr8.1:19262219-19262238 | MS.gene56964:intron | 50.0% | |
| CATTCTGACTTCCAGTGGGT+TGG | + | chr8.1:19262258-19262277 | None:intergenic | 50.0% | |
| CCTGCCTTTGTATCCAAAGC+TGG | - | chr8.1:19264151-19264170 | MS.gene56964:intron | 50.0% | |
| GATGCAGCAAGGTTGTTGCT+TGG | - | chr8.1:19263513-19263532 | MS.gene56964:intron | 50.0% | |
| TAACCACTCTACTCTGCAGC+TGG | - | chr8.1:19263473-19263492 | MS.gene56964:intron | 50.0% | |
| TCCCAAACCACTGGAAGTCA+GGG | - | chr8.1:19262220-19262239 | MS.gene56964:intron | 50.0% | |
| TGATTCACCCTGACTTCCAG+TGG | + | chr8.1:19262230-19262249 | None:intergenic | 50.0% | |
| TTTCCAGCTGCAGAGTAGAG+TGG | + | chr8.1:19263479-19263498 | None:intergenic | 50.0% | |
| ! | ACTTTTGCTGCAAGGCCAGA+TGG | + | chr8.1:19263652-19263671 | None:intergenic | 50.0% |
| ! | CTTTTGCTGCAAGGCCAGAT+GGG | + | chr8.1:19263651-19263670 | None:intergenic | 50.0% |
| ! | GGTATCGGATGAAGAGGATG+AGG | - | chr8.1:19262186-19262205 | MS.gene56964:intron | 50.0% |
| !! | CCAGCTTTGGATACAAAGGC+AGG | + | chr8.1:19264154-19264173 | None:intergenic | 50.0% |
| !! | CTGGCCTTGCAGCAAAAGTT+AGG | - | chr8.1:19263653-19263672 | MS.gene56964:intron | 50.0% |
| !! | GAGTCTAGGAAAAGGGCGTT+TGG | - | chr8.1:19263962-19263981 | MS.gene56964:intron | 50.0% |
| !! | GTTCAGGCGTTGAGAGAAGA+CGG | - | chr8.1:19261672-19261691 | MS.gene56964:CDS | 50.0% |
| !! | TAAGTGTGGTGTCGTGAAGG+AGG | + | chr8.1:19261380-19261399 | None:intergenic | 50.0% |
| !! | TCGTAAGTGTGGTGTCGTGA+AGG | + | chr8.1:19261383-19261402 | None:intergenic | 50.0% |
| AAGCCTAGCCACCTGAATGC+TGG | + | chr8.1:19263893-19263912 | None:intergenic | 55.0% | |
| CACCCTGACTTCCAGTGGTT+TGG | + | chr8.1:19262225-19262244 | None:intergenic | 55.0% | |
| GACGATGCTGCCGCCAAATT+AGG | - | chr8.1:19261567-19261586 | MS.gene56964:CDS | 55.0% | |
| ! | CTTGGTGCATAAGAGGCCGA+GGG | + | chr8.1:19261420-19261439 | None:intergenic | 55.0% |
| ! | GGCGCCTAACTTTTGCTGCA+AGG | + | chr8.1:19263660-19263679 | None:intergenic | 55.0% |
| !! | ACTTGGTGCATAAGAGGCCG+AGG | + | chr8.1:19261421-19261440 | None:intergenic | 55.0% |
| !! | GTGGTGTCGTGAAGGAGGAT+CGG | + | chr8.1:19261375-19261394 | None:intergenic | 55.0% |
| GTGTCGTGAAGGAGGATCGG+AGG | + | chr8.1:19261372-19261391 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 19261356 | 19264261 | 19261356 | ID=MS.gene56964 |
| chr8.1 | mRNA | 19261356 | 19264261 | 19261356 | ID=MS.gene56964.t1;Parent=MS.gene56964 |
| chr8.1 | exon | 19264179 | 19264261 | 19264179 | ID=MS.gene56964.t1.exon1;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19264179 | 19264261 | 19264179 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19264029 | 19264096 | 19264029 | ID=MS.gene56964.t1.exon2;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19264029 | 19264096 | 19264029 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19263887 | 19263939 | 19263887 | ID=MS.gene56964.t1.exon3;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19263887 | 19263939 | 19263887 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19263699 | 19263776 | 19263699 | ID=MS.gene56964.t1.exon4;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19263699 | 19263776 | 19263699 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19263519 | 19263578 | 19263519 | ID=MS.gene56964.t1.exon5;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19263519 | 19263578 | 19263519 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19263295 | 19263430 | 19263295 | ID=MS.gene56964.t1.exon6;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19263295 | 19263430 | 19263295 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19262239 | 19262303 | 19262239 | ID=MS.gene56964.t1.exon7;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19262239 | 19262303 | 19262239 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19262053 | 19262125 | 19262053 | ID=MS.gene56964.t1.exon8;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19262053 | 19262125 | 19262053 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19261891 | 19261952 | 19261891 | ID=MS.gene56964.t1.exon9;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19261891 | 19261952 | 19261891 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| chr8.1 | exon | 19261356 | 19261751 | 19261356 | ID=MS.gene56964.t1.exon10;Parent=MS.gene56964.t1 |
| chr8.1 | CDS | 19261356 | 19261751 | 19261356 | ID=cds.MS.gene56964.t1;Parent=MS.gene56964.t1 |
| Gene Sequence |
| Protein sequence |
