Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059919.t1 | XP_013457858.1 | 93.9 | 755 | 38 | 3 | 1 | 747 | 1 | 755 | 7.50E-299 | 1036.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059919.t1 | F4IDY7 | 58.4 | 637 | 241 | 10 | 115 | 744 | 126 | 745 | 8.0e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059919.t1 | A0A072UQ12 | 93.9 | 755 | 38 | 3 | 1 | 747 | 1 | 755 | 5.4e-299 | 1036.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059919.t1 | TR | DDT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059919 | MS.gene059920 | 0.845078 | 5.08E-59 | -1.69E-46 |
| MS.gene059919 | MS.gene56843 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene059919 | MS.gene56890 | 0.813391 | 2.62E-51 | -1.69E-46 |
| MS.gene059919 | MS.gene56892 | 0.806965 | 6.36E-50 | -1.69E-46 |
| MS.gene059919 | MS.gene56937 | 0.811908 | 5.53E-51 | -1.69E-46 |
| MS.gene059919 | MS.gene56964 | 0.810989 | 8.76E-51 | -1.69E-46 |
| MS.gene059919 | MS.gene56967 | 0.848697 | 5.19E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059919.t1 | MTR_4g107390 | 95.762 | 755 | 24 | 3 | 1 | 747 | 1 | 755 | 0.0 | 1461 |
| MS.gene059919.t1 | MTR_3g108410 | 44.969 | 318 | 168 | 3 | 110 | 426 | 16 | 327 | 4.19e-81 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059919.t1 | AT1G18950 | 54.917 | 783 | 274 | 21 | 4 | 744 | 2 | 747 | 0.0 | 723 |
| MS.gene059919.t1 | AT1G18950 | 54.511 | 787 | 275 | 22 | 4 | 744 | 2 | 751 | 0.0 | 715 |
| MS.gene059919.t1 | AT1G18950 | 54.545 | 781 | 278 | 20 | 4 | 744 | 2 | 745 | 0.0 | 702 |
| MS.gene059919.t1 | AT5G25580 | 41.275 | 298 | 165 | 3 | 122 | 419 | 48 | 335 | 1.59e-71 | 239 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGGTGGCGGTGGGATTT+TGG | 0.063942 | 8.1:+19412363 | None:intergenic |
| TTGTGAACTTTCTCAATTTC+TGG | 0.124634 | 8.1:+19407803 | None:intergenic |
| CATTCACATGTCTTTGTTAA+AGG | 0.138919 | 8.1:-19411836 | MS.gene059919:intron |
| TCATCTTTCATAATTGTATT+TGG | 0.174896 | 8.1:+19405456 | None:intergenic |
| TTCGGTTTCCGTTCAATTAC+CGG | 0.199404 | 8.1:+19412230 | None:intergenic |
| ATTCAAATGGAATTTCTTAT+TGG | 0.209723 | 8.1:-19409520 | MS.gene059919:intron |
| ATCTTGAAATTCATCAAAAT+TGG | 0.231476 | 8.1:+19409246 | None:intergenic |
| GCAGCACAACATCAGAATTT+TGG | 0.265150 | 8.1:-19406391 | MS.gene059919:CDS |
| TTCTCTTCAACTTCAGTGTC+AGG | 0.276891 | 8.1:+19405603 | None:intergenic |
| TCTCTCCTGGGCATAGGTTC+TGG | 0.292803 | 8.1:+19406466 | None:intergenic |
| GTGAGTGCCACTCGCGTAAT+TGG | 0.304666 | 8.1:+19410651 | None:intergenic |
| ATACGATAATACTGACAATT+TGG | 0.305193 | 8.1:-19406329 | MS.gene059919:CDS |
| GTTACCGATGGGCATTCTGC+TGG | 0.307165 | 8.1:-19407568 | MS.gene059919:CDS |
| CACCTCCTATACGCTCTTTA+CGG | 0.308932 | 8.1:+19409543 | None:intergenic |
| AGCTGATGCAATAGACTTCT+TGG | 0.325457 | 8.1:+19405782 | None:intergenic |
| GGGAACCGCGTCGGTGGCGG+TGG | 0.328140 | 8.1:+19412355 | None:intergenic |
| CCTCTTGCTCTCCCTTTCCT+TGG | 0.333828 | 8.1:+19409316 | None:intergenic |
| AGGCAATCGTTTGACTTTGC+GGG | 0.340337 | 8.1:+19405944 | None:intergenic |
| AAACATGTAACTTACACTTT+TGG | 0.355645 | 8.1:-19407526 | MS.gene059919:intron |
| TGCCGCCGTTGTTCCTTCTT+CGG | 0.359742 | 8.1:+19412212 | None:intergenic |
| TACTTTGATTGCCTCATTGA+TGG | 0.359804 | 8.1:+19406637 | None:intergenic |
| AGCGGTGGCTGTTTCCTCCT+TGG | 0.369377 | 8.1:+19412334 | None:intergenic |
| GATTGCCTGGCCGAGCTAGA+AGG | 0.372251 | 8.1:-19405929 | MS.gene059919:CDS |
| TGCAATAGACTTCTTGGGTT+TGG | 0.373299 | 8.1:+19405788 | None:intergenic |
| CAGGCAATCGTTTGACTTTG+CGG | 0.374917 | 8.1:+19405943 | None:intergenic |
| TATGCAGAAAATTGAGAGAT+TGG | 0.377904 | 8.1:-19410605 | MS.gene059919:CDS |
| GGCGGCAGCGTGAGAGGGAG+AGG | 0.378643 | 8.1:-19412196 | MS.gene059919:CDS |
| AGCGTGAGAGGGAGAGGGAG+AGG | 0.394683 | 8.1:-19412190 | MS.gene059919:CDS |
| ATTGAGAGATTGGTGGCATT+GGG | 0.398403 | 8.1:-19410595 | MS.gene059919:intron |
| GCGGTGGCTGTTTCCTCCTT+GGG | 0.399523 | 8.1:+19412335 | None:intergenic |
| TTTGCTATTGGTTCTCTCCT+GGG | 0.408433 | 8.1:+19406454 | None:intergenic |
| ATGTAAAACAAAGTGTCATT+GGG | 0.408612 | 8.1:+19411856 | None:intergenic |
| GACAGTGATGATGATATTGT+TGG | 0.409966 | 8.1:-19406140 | MS.gene059919:CDS |
| GAGGGAGAGGGAGGATTCTC+CGG | 0.419596 | 8.1:-19412177 | MS.gene059919:CDS |
| AAATCTGACGCTCAAACTAA+TGG | 0.426409 | 8.1:-19406433 | MS.gene059919:CDS |
| AACAACGGCGGCAGCGTGAG+AGG | 0.426433 | 8.1:-19412202 | MS.gene059919:CDS |
| GGTGATCGGTCGGCGGGAAG+CGG | 0.427497 | 8.1:+19412407 | None:intergenic |
| TCTTCTTCTTGATAATTACT+TGG | 0.427599 | 8.1:-19407590 | MS.gene059919:CDS |
| CTTCTCGTGGTCGGAGGTGG+AGG | 0.430315 | 8.1:+19412311 | None:intergenic |
| AATGTAAAACAAAGTGTCAT+TGG | 0.431128 | 8.1:+19411855 | None:intergenic |
| AATGATAATGAGAATGAGAA+TGG | 0.432577 | 8.1:-19405708 | MS.gene059919:CDS |
| ATTGGTTCTCTCCTGGGCAT+AGG | 0.433329 | 8.1:+19406460 | None:intergenic |
| CTGGGCGTGCACTTCGTGAC+AGG | 0.435272 | 8.1:-19407549 | MS.gene059919:CDS |
| GCTGATGCAATAGACTTCTT+GGG | 0.435536 | 8.1:+19405783 | None:intergenic |
| AATGAGCTTGCCCCTAGCCC+TGG | 0.438661 | 8.1:-19405492 | MS.gene059919:CDS |
| TTGCTTCTCGTGGTCGGAGG+TGG | 0.439555 | 8.1:+19412308 | None:intergenic |
| ATATAACCTATGACCAATCA+TGG | 0.441683 | 8.1:+19409369 | None:intergenic |
| AATTGAGAGATTGGTGGCAT+TGG | 0.442787 | 8.1:-19410596 | MS.gene059919:CDS |
| AATCTCATTCTCATTCTCGC+TGG | 0.449121 | 8.1:+19405746 | None:intergenic |
| CGGTCGGCGGGAAGCGGAGA+AGG | 0.449663 | 8.1:+19412413 | None:intergenic |
| ATGATAATGAGAATGAGAAT+GGG | 0.452629 | 8.1:-19405707 | MS.gene059919:CDS |
| AAGGAGATGAAGAAGATGAA+TGG | 0.455289 | 8.1:-19406049 | MS.gene059919:CDS |
| GATAATTACTTGGTTACCGA+TGG | 0.455496 | 8.1:-19407580 | MS.gene059919:CDS |
| CGGCGCGAATCGTGCACGCG+CGG | 0.457636 | 8.1:+19412276 | None:intergenic |
| CTTCTTGGGTTTGGTGAACT+CGG | 0.457894 | 8.1:+19405797 | None:intergenic |
| TGAGAGGGAGAGGGAGAGGG+AGG | 0.458142 | 8.1:-19412186 | MS.gene059919:CDS |
| CGAGTTTGTTGAAGAAGTAT+CGG | 0.460403 | 8.1:-19406180 | MS.gene059919:CDS |
| TGGCACTCACACGTGATACT+TGG | 0.460623 | 8.1:-19410638 | MS.gene059919:CDS |
| GAATCGGGTTCCGGCGAGGT+TGG | 0.463102 | 8.1:+19412386 | None:intergenic |
| CTTGGGAACCGCGTCGGTGG+CGG | 0.465614 | 8.1:+19412352 | None:intergenic |
| TCGTTCTCTGAATACCGCTT+AGG | 0.467308 | 8.1:+19406200 | None:intergenic |
| CGTATAGGAGGTGATTCAAA+TGG | 0.468048 | 8.1:-19409533 | MS.gene059919:CDS |
| GCACGATTCGCGCCGCTCAA+CGG | 0.468162 | 8.1:-19412268 | MS.gene059919:CDS |
| TACCCTTGTGAAGCAACAAT+CGG | 0.472873 | 8.1:+19410358 | None:intergenic |
| TTACCGATGGGCATTCTGCT+GGG | 0.474049 | 8.1:-19407567 | MS.gene059919:CDS |
| TCAGTGTCAGGGGCAACAAC+GGG | 0.476124 | 8.1:+19405615 | None:intergenic |
| CTTCCGATTGTTGCTTCACA+AGG | 0.477506 | 8.1:-19410361 | MS.gene059919:CDS |
| GTATTCATCAGAGTCAGAAC+CGG | 0.479134 | 8.1:+19406348 | None:intergenic |
| CTGCATTGTGACGGCGGAGA+AGG | 0.479762 | 8.1:+19412146 | None:intergenic |
| AAGATTGTAACACGGATGGC+TGG | 0.480533 | 8.1:+19410226 | None:intergenic |
| GCGAATCGTGCACGCGCGGG+AGG | 0.482279 | 8.1:+19412280 | None:intergenic |
| CGCAAAGTCAAACGATTGCC+TGG | 0.482746 | 8.1:-19405942 | MS.gene059919:CDS |
| CGCCACCGACGCGGTTCCCA+AGG | 0.484181 | 8.1:-19412351 | MS.gene059919:CDS |
| GTTTAGTTTCCCTTCTAGCT+CGG | 0.485040 | 8.1:+19405919 | None:intergenic |
| CCATCATCAAAACCAGGGCT+AGG | 0.485874 | 8.1:+19405480 | None:intergenic |
| ATCTCATTCTCATTCTCGCT+GGG | 0.486106 | 8.1:+19405747 | None:intergenic |
| CAGTAAAATCGTTACGCCGT+TGG | 0.486415 | 8.1:-19412126 | MS.gene059919:CDS |
| TATGAAGATGACCCCATGAT+TGG | 0.486939 | 8.1:-19409382 | MS.gene059919:CDS |
| GAGGTTGGTGATCGGTCGGC+GGG | 0.487722 | 8.1:+19412401 | None:intergenic |
| ATGACCCCATGATTGGTCAT+AGG | 0.489249 | 8.1:-19409375 | MS.gene059919:CDS |
| GGAACCGCGTCGGTGGCGGT+GGG | 0.489798 | 8.1:+19412356 | None:intergenic |
| AAGCATTCTAGTAGCTCTGA+AGG | 0.492361 | 8.1:-19406068 | MS.gene059919:CDS |
| GGCGCGAATCGTGCACGCGC+GGG | 0.492911 | 8.1:+19412277 | None:intergenic |
| GCGTGAGAGGGAGAGGGAGA+GGG | 0.493812 | 8.1:-19412189 | MS.gene059919:CDS |
| AATCCGACATCTCATATTGT+CGG | 0.495010 | 8.1:+19405826 | None:intergenic |
| TCGTGCACGCGCGGGAGGGA+CGG | 0.495728 | 8.1:+19412285 | None:intergenic |
| GTAGCCCTCCTACTGCGTCT+TGG | 0.495951 | 8.1:+19405867 | None:intergenic |
| CCCTCGACTTCATCTTGACC+AGG | 0.496909 | 8.1:+19405543 | None:intergenic |
| CACATTCAAGAAATTGAGTA+CGG | 0.504158 | 8.1:+19412040 | None:intergenic |
| TTCCTCCTTGGGAACCGCGT+CGG | 0.506968 | 8.1:+19412346 | None:intergenic |
| CCTCTCTCCATCATGTCTCA+TGG | 0.509261 | 8.1:-19412440 | None:intergenic |
| GGACGGTTGCTTCTCGTGGT+CGG | 0.510577 | 8.1:+19412302 | None:intergenic |
| AACAGAACAGAGACTTCTGT+TGG | 0.512894 | 8.1:-19407851 | MS.gene059919:CDS |
| ACATTCCGTAAAGAGCGTAT+AGG | 0.513803 | 8.1:-19409548 | MS.gene059919:CDS |
| AAGTGATTCAACCAAGGAAA+GGG | 0.513949 | 8.1:-19409327 | MS.gene059919:CDS |
| GGGCAAGCTCATTCAAATCA+AGG | 0.516053 | 8.1:+19405502 | None:intergenic |
| TCTCTTCAACTTCAGTGTCA+GGG | 0.526079 | 8.1:+19405604 | None:intergenic |
| CATCATCAAAACCAGGGCTA+GGG | 0.526236 | 8.1:+19405481 | None:intergenic |
| AGGAGATGAAGAAGATGAAT+GGG | 0.526916 | 8.1:-19406048 | MS.gene059919:CDS |
| TCAAGAAACGCAAGCAGAGA+AGG | 0.527016 | 8.1:-19406091 | MS.gene059919:CDS |
| CGAGGTTGGTGATCGGTCGG+CGG | 0.529712 | 8.1:+19412400 | None:intergenic |
| TTCAGTGTCAGGGGCAACAA+CGG | 0.535244 | 8.1:+19405614 | None:intergenic |
| CGAATCGTGCACGCGCGGGA+GGG | 0.535248 | 8.1:+19412281 | None:intergenic |
| AAGCTAACTCCCACATCGAC+CGG | 0.540263 | 8.1:+19412063 | None:intergenic |
| CAAGATGAAGTCGAGGGCAC+AGG | 0.540940 | 8.1:-19405537 | MS.gene059919:CDS |
| GTTTCCCTTCTAGCTCGGCC+AGG | 0.542726 | 8.1:+19405924 | None:intergenic |
| ATTGCCTGGCCGAGCTAGAA+GGG | 0.544283 | 8.1:-19405928 | MS.gene059919:CDS |
| GAAAAGTCAAGTAGTCCTCC+TGG | 0.548361 | 8.1:-19405561 | MS.gene059919:CDS |
| GGCAATCGTTTGACTTTGCG+GGG | 0.550479 | 8.1:+19405945 | None:intergenic |
| GGTCGGAGGTGGAGGAGCGG+TGG | 0.550689 | 8.1:+19412319 | None:intergenic |
| ATAATTACTTGGTTACCGAT+GGG | 0.551123 | 8.1:-19407579 | MS.gene059919:CDS |
| GCGGCAGCGTGAGAGGGAGA+GGG | 0.552139 | 8.1:-19412195 | MS.gene059919:CDS |
| CAAGTCCAAGACGCAGTAGG+AGG | 0.553550 | 8.1:-19405872 | MS.gene059919:CDS |
| CCAAGGAAAGGGAGAGCAAG+AGG | 0.554823 | 8.1:-19409316 | MS.gene059919:CDS |
| AATTGAACGGAAACCGAAGA+AGG | 0.555190 | 8.1:-19412225 | MS.gene059919:CDS |
| TATAACCTATGACCAATCAT+GGG | 0.557406 | 8.1:+19409370 | None:intergenic |
| GTTCCGGCGAGGTTGGTGAT+CGG | 0.559195 | 8.1:+19412393 | None:intergenic |
| ATGACGTATTAGAGAGAACA+TGG | 0.559470 | 8.1:+19409290 | None:intergenic |
| GCAGAAAATTGAGAGATTGG+TGG | 0.559913 | 8.1:-19410602 | MS.gene059919:CDS |
| GTGGAAACTCCGGTCGATGT+GGG | 0.559958 | 8.1:-19412072 | MS.gene059919:CDS |
| GGAAACTAAACGCAGGTCTG+TGG | 0.562930 | 8.1:-19405907 | MS.gene059919:CDS |
| CTCCTTGGGAACCGCGTCGG+TGG | 0.563722 | 8.1:+19412349 | None:intergenic |
| AGAAGAAGATGAAGATGATG+AGG | 0.564138 | 8.1:-19406003 | MS.gene059919:CDS |
| TGAAGATGATGAGGAAGACT+CGG | 0.565022 | 8.1:-19405994 | MS.gene059919:CDS |
| TGATGTTGTGCTGCGTGTGA+AGG | 0.565771 | 8.1:+19406400 | None:intergenic |
| AGTGCCACTCGCGTAATTGG+AGG | 0.567038 | 8.1:+19410654 | None:intergenic |
| ACAACGGCGGCAGCGTGAGA+GGG | 0.567076 | 8.1:-19412201 | MS.gene059919:CDS |
| CGCGGCAACTGCGACTCAGA+CGG | 0.567082 | 8.1:+19412095 | None:intergenic |
| AGTTGCCGCGGTGGAAACTC+CGG | 0.567958 | 8.1:-19412082 | MS.gene059919:CDS |
| TGGTAGCAACTGCTTCCCAC+TGG | 0.568541 | 8.1:+19409266 | None:intergenic |
| ATTCATGTGCAGGTTGCCGA+GGG | 0.569864 | 8.1:-19410388 | MS.gene059919:intron |
| CGGCGAGGTTGGTGATCGGT+CGG | 0.570109 | 8.1:+19412397 | None:intergenic |
| ACAGAACAGAGACTTCTGTT+GGG | 0.572145 | 8.1:-19407850 | MS.gene059919:CDS |
| CGACCGATCACCAACCTCGC+CGG | 0.572422 | 8.1:-19412396 | MS.gene059919:CDS |
| CTCTTCAACTTCAGTGTCAG+GGG | 0.573015 | 8.1:+19405605 | None:intergenic |
| CTGAGTCGCAGTTGCCGCGG+TGG | 0.575079 | 8.1:-19412091 | MS.gene059919:CDS |
| GGTGGAAACTCCGGTCGATG+TGG | 0.575139 | 8.1:-19412073 | MS.gene059919:CDS |
| TCATCATCACTGTCAAACTC+TGG | 0.579153 | 8.1:+19406149 | None:intergenic |
| TATTCATCAGAGTCAGAACC+GGG | 0.580053 | 8.1:+19406349 | None:intergenic |
| ATCATCAAAACCAGGGCTAG+GGG | 0.582261 | 8.1:+19405482 | None:intergenic |
| GGAGGGACGGTTGCTTCTCG+TGG | 0.591773 | 8.1:+19412298 | None:intergenic |
| AATTCATGTGCAGGTTGCCG+AGG | 0.592494 | 8.1:-19410389 | MS.gene059919:intron |
| GAAGTGATTCAACCAAGGAA+AGG | 0.593696 | 8.1:-19409328 | MS.gene059919:CDS |
| ACGGCTCTATTCCTCGCCGC+CGG | 0.595807 | 8.1:-19412249 | MS.gene059919:CDS |
| CGTGGTCGGAGGTGGAGGAG+CGG | 0.596318 | 8.1:+19412316 | None:intergenic |
| CTCTAATACGTCATACCAGT+GGG | 0.596908 | 8.1:-19409281 | MS.gene059919:CDS |
| CGAGGAATAGAGCCGTTGAG+CGG | 0.598911 | 8.1:+19412256 | None:intergenic |
| TTCCGTAAAGAGCGTATAGG+AGG | 0.600092 | 8.1:-19409545 | MS.gene059919:CDS |
| TCCTGGTCAAGATGAAGTCG+AGG | 0.600981 | 8.1:-19405544 | MS.gene059919:CDS |
| TGATAATGAGAATGAGAATG+GGG | 0.601121 | 8.1:-19405706 | MS.gene059919:CDS |
| CGGTTGCTTCTCGTGGTCGG+AGG | 0.601793 | 8.1:+19412305 | None:intergenic |
| CCTCGCCGCCGGTAATTGAA+CGG | 0.602482 | 8.1:-19412238 | MS.gene059919:CDS |
| GAAACTAAACGCAGGTCTGT+GGG | 0.602741 | 8.1:-19405906 | MS.gene059919:CDS |
| TCATGTGCAGGTTGCCGAGG+GGG | 0.604257 | 8.1:-19410386 | MS.gene059919:intron |
| AAGTCCAAGACGCAGTAGGA+GGG | 0.605439 | 8.1:-19405871 | MS.gene059919:CDS |
| CATCTCCAGAACCTATGCCC+AGG | 0.609093 | 8.1:-19406471 | MS.gene059919:CDS |
| GAAGATGATGAGGAAGACTC+GGG | 0.611431 | 8.1:-19405993 | MS.gene059919:CDS |
| ATACTGACAATTTGGACCGA+AGG | 0.613345 | 8.1:-19406321 | MS.gene059919:intron |
| CACCGACGCGGTTCCCAAGG+AGG | 0.618785 | 8.1:-19412348 | MS.gene059919:CDS |
| GATTCAGATAGCATTGAAGA+CGG | 0.620845 | 8.1:-19405663 | MS.gene059919:CDS |
| TTTGGACCATCATCAAAACC+AGG | 0.621637 | 8.1:+19405474 | None:intergenic |
| TTGGGAATCGGGTTCCGGCG+AGG | 0.623088 | 8.1:+19412382 | None:intergenic |
| TTACCGACAATATGAGATGT+CGG | 0.626247 | 8.1:-19405829 | MS.gene059919:CDS |
| CCGTTCAATTACCGGCGGCG+AGG | 0.630090 | 8.1:+19412238 | None:intergenic |
| TCAGACGGCGATTCAACCAA+CGG | 0.630887 | 8.1:+19412110 | None:intergenic |
| GTGCCACTCGCGTAATTGGA+GGG | 0.631876 | 8.1:+19410655 | None:intergenic |
| TCTCTAATACGTCATACCAG+TGG | 0.635761 | 8.1:-19409282 | MS.gene059919:CDS |
| AATCAAGTCCAAGACGCAGT+AGG | 0.638953 | 8.1:-19405875 | MS.gene059919:CDS |
| GGCGGAGAAGGTGAAGACTC+CGG | 0.639797 | 8.1:+19412158 | None:intergenic |
| ATTGTGCGACATTCGTGTTG+AGG | 0.639823 | 8.1:-19410197 | MS.gene059919:intron |
| CGTCTGAGTCGCAGTTGCCG+CGG | 0.641396 | 8.1:-19412094 | MS.gene059919:CDS |
| TTCCGATTGTTGCTTCACAA+GGG | 0.642283 | 8.1:-19410360 | MS.gene059919:intron |
| TGTAAAACAAAGTGTCATTG+GGG | 0.651329 | 8.1:+19411857 | None:intergenic |
| GTGCTGCGTGTGAAGGACCA+TGG | 0.656074 | 8.1:+19406407 | None:intergenic |
| GCTCAAACTAATGGTAACCA+TGG | 0.660353 | 8.1:-19406424 | MS.gene059919:CDS |
| ATCTCATCTACAGAATCACC+CGG | 0.660629 | 8.1:-19406367 | MS.gene059919:CDS |
| ATTGACAACTCAGTCAAACA+TGG | 0.662775 | 8.1:-19409584 | MS.gene059919:CDS |
| AAATCCCACCGCCACCGACG+CGG | 0.664692 | 8.1:-19412360 | MS.gene059919:CDS |
| ACGCCCAGCAGAATGCCCAT+CGG | 0.664983 | 8.1:+19407564 | None:intergenic |
| AGAAATTGAGAAAGTTCACA+AGG | 0.665180 | 8.1:-19407801 | MS.gene059919:intron |
| AATCCCTCCAATTACGCGAG+TGG | 0.667469 | 8.1:-19410658 | MS.gene059919:CDS |
| CCTGGTCAAGATGAAGTCGA+GGG | 0.667592 | 8.1:-19405543 | MS.gene059919:CDS |
| GGTTTCCGTTCAATTACCGG+CGG | 0.681099 | 8.1:+19412233 | None:intergenic |
| CTAGAAGGGAAACTAAACGC+AGG | 0.691443 | 8.1:-19405914 | MS.gene059919:CDS |
| GGAAACCGAAGAAGGAACAA+CGG | 0.693785 | 8.1:-19412217 | MS.gene059919:CDS |
| AAACTGAAGTGATTCAACCA+AGG | 0.696050 | 8.1:-19409333 | MS.gene059919:CDS |
| GGAGTATGTGATGAAAAGTG+AGG | 0.696066 | 8.1:-19405685 | MS.gene059919:CDS |
| TCAAGTGAGATATTCAGCAG+AGG | 0.699159 | 8.1:+19411916 | None:intergenic |
| AACCGAAGAAGGAACAACGG+CGG | 0.700600 | 8.1:-19412214 | MS.gene059919:CDS |
| TCGACTTCATCTTGACCAGG+AGG | 0.704403 | 8.1:+19405546 | None:intergenic |
| TTGGACCATCATCAAAACCA+GGG | 0.708415 | 8.1:+19405475 | None:intergenic |
| TTCATGTGCAGGTTGCCGAG+GGG | 0.708654 | 8.1:-19410387 | MS.gene059919:intron |
| ATAACCTATGACCAATCATG+GGG | 0.724932 | 8.1:+19409371 | None:intergenic |
| GTCGAAGAACAAAACCTAAG+CGG | 0.726058 | 8.1:-19406214 | MS.gene059919:CDS |
| TTATGATCGATCCATCAATG+AGG | 0.737001 | 8.1:-19406648 | MS.gene059919:CDS |
| TGACGTATTAGAGAGAACAT+GGG | 0.742092 | 8.1:+19409291 | None:intergenic |
| AGACTCGGGAAGCATCAGCG+AGG | 0.764599 | 8.1:-19405979 | MS.gene059919:CDS |
| ATCGACCGGAGTTTCCACCG+CGG | 0.831776 | 8.1:+19412077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 19405440 | 19412450 | 19405440 | ID=MS.gene059919 |
| chr8.1 | mRNA | 19405440 | 19412450 | 19405440 | ID=MS.gene059919.t1;Parent=MS.gene059919 |
| chr8.1 | exon | 19412043 | 19412450 | 19412043 | ID=MS.gene059919.t1.exon1;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19412043 | 19412450 | 19412043 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19411837 | 19411947 | 19411837 | ID=MS.gene059919.t1.exon2;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19411837 | 19411947 | 19411837 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19410596 | 19410682 | 19410596 | ID=MS.gene059919.t1.exon3;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19410596 | 19410682 | 19410596 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19410361 | 19410398 | 19410361 | ID=MS.gene059919.t1.exon4;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19410361 | 19410398 | 19410361 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19410198 | 19410279 | 19410198 | ID=MS.gene059919.t1.exon5;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19410198 | 19410279 | 19410198 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19409521 | 19409627 | 19409521 | ID=MS.gene059919.t1.exon6;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19409521 | 19409627 | 19409521 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19409240 | 19409405 | 19409240 | ID=MS.gene059919.t1.exon7;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19409240 | 19409405 | 19409240 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19407802 | 19407894 | 19407802 | ID=MS.gene059919.t1.exon8;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19407802 | 19407894 | 19407802 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19407527 | 19407650 | 19407527 | ID=MS.gene059919.t1.exon9;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19407527 | 19407650 | 19407527 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19406632 | 19406674 | 19406632 | ID=MS.gene059919.t1.exon10;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19406632 | 19406674 | 19406632 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19406322 | 19406504 | 19406322 | ID=MS.gene059919.t1.exon11;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19406322 | 19406504 | 19406322 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| chr8.1 | exon | 19405440 | 19406241 | 19405440 | ID=MS.gene059919.t1.exon12;Parent=MS.gene059919.t1 |
| chr8.1 | CDS | 19405440 | 19406241 | 19405440 | ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1 |
| Gene Sequence |
| Protein sequence |
