AlfalfaGEDB | MS.gene059919

M. sativa cultivar XinJiangDaYe / MS.gene059919

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059919.t1	XP_013457858.1	93.9	755	38	3	1	747	1	755	7.50E-299	1036.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059919.t1	F4IDY7	58.4	637	241	10	115	744	126	745	8.0e-140	499.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059919.t1	A0A072UQ12	93.9	755	38	3	1	747	1	755	5.4e-299	1036.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene059919.t1	TR	DDT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059919	MS.gene059920	0.845078	5.08E-59	-1.69E-46
MS.gene059919	MS.gene56843	0.809648	1.71E-50	-1.69E-46
MS.gene059919	MS.gene56890	0.813391	2.62E-51	-1.69E-46
MS.gene059919	MS.gene56892	0.806965	6.36E-50	-1.69E-46
MS.gene059919	MS.gene56937	0.811908	5.53E-51	-1.69E-46
MS.gene059919	MS.gene56964	0.810989	8.76E-51	-1.69E-46
MS.gene059919	MS.gene56967	0.848697	5.19E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059919.t1	MTR_4g107390	95.762	755	24	3	1	747	1	755	0.0	1461
MS.gene059919.t1	MTR_3g108410	44.969	318	168	3	110	426	16	327	4.19e-81	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059919.t1	AT1G18950	54.917	783	274	21	4	744	2	747	0.0	723
MS.gene059919.t1	AT1G18950	54.511	787	275	22	4	744	2	751	0.0	715
MS.gene059919.t1	AT1G18950	54.545	781	278	20	4	744	2	745	0.0	702
MS.gene059919.t1	AT5G25580	41.275	298	165	3	122	419	48	335	1.59e-71	239

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Find 198 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTAACTTACACTTT+TGG	0.355645	8.1:-19407526	MS.gene059919:intron
AAACTGAAGTGATTCAACCA+AGG	0.696050	8.1:-19409333	MS.gene059919:CDS
AAATCCCACCGCCACCGACG+CGG	0.664692	8.1:-19412360	MS.gene059919:CDS
AAATCTGACGCTCAAACTAA+TGG	0.426409	8.1:-19406433	MS.gene059919:CDS
AACAACGGCGGCAGCGTGAG+AGG	0.426433	8.1:-19412202	MS.gene059919:CDS
AACAGAACAGAGACTTCTGT+TGG	0.512894	8.1:-19407851	MS.gene059919:CDS
AACCGAAGAAGGAACAACGG+CGG	0.700600	8.1:-19412214	MS.gene059919:CDS
AAGATTGTAACACGGATGGC+TGG	0.480533	8.1:+19410226	None:intergenic
AAGCATTCTAGTAGCTCTGA+AGG	0.492361	8.1:-19406068	MS.gene059919:CDS
AAGCTAACTCCCACATCGAC+CGG	0.540263	8.1:+19412063	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	19405440	19412450	19405440	ID=MS.gene059919
chr8.1	mRNA	19405440	19412450	19405440	ID=MS.gene059919.t1;Parent=MS.gene059919
chr8.1	exon	19412043	19412450	19412043	ID=MS.gene059919.t1.exon1;Parent=MS.gene059919.t1
chr8.1	CDS	19412043	19412450	19412043	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19411837	19411947	19411837	ID=MS.gene059919.t1.exon2;Parent=MS.gene059919.t1
chr8.1	CDS	19411837	19411947	19411837	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19410596	19410682	19410596	ID=MS.gene059919.t1.exon3;Parent=MS.gene059919.t1
chr8.1	CDS	19410596	19410682	19410596	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19410361	19410398	19410361	ID=MS.gene059919.t1.exon4;Parent=MS.gene059919.t1
chr8.1	CDS	19410361	19410398	19410361	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19410198	19410279	19410198	ID=MS.gene059919.t1.exon5;Parent=MS.gene059919.t1
chr8.1	CDS	19410198	19410279	19410198	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19409521	19409627	19409521	ID=MS.gene059919.t1.exon6;Parent=MS.gene059919.t1
chr8.1	CDS	19409521	19409627	19409521	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19409240	19409405	19409240	ID=MS.gene059919.t1.exon7;Parent=MS.gene059919.t1
chr8.1	CDS	19409240	19409405	19409240	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19407802	19407894	19407802	ID=MS.gene059919.t1.exon8;Parent=MS.gene059919.t1
chr8.1	CDS	19407802	19407894	19407802	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19407527	19407650	19407527	ID=MS.gene059919.t1.exon9;Parent=MS.gene059919.t1
chr8.1	CDS	19407527	19407650	19407527	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19406632	19406674	19406632	ID=MS.gene059919.t1.exon10;Parent=MS.gene059919.t1
chr8.1	CDS	19406632	19406674	19406632	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19406322	19406504	19406322	ID=MS.gene059919.t1.exon11;Parent=MS.gene059919.t1
chr8.1	CDS	19406322	19406504	19406322	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1
chr8.1	exon	19405440	19406241	19405440	ID=MS.gene059919.t1.exon12;Parent=MS.gene059919.t1
chr8.1	CDS	19405440	19406241	19405440	ID=cds.MS.gene059919.t1;Parent=MS.gene059919.t1

Gene Sequence

>MS.gene059919

ATGTCTCATGGATCTCCTTCTCCGCTTCCCGCCGACCGATCACCAACCTCGCCGGAACCCGATTCCCAAAATCCCACCGCCACCGACGCGGTTCCCAAGGAGGAAACAGCCACCGCTCCTCCACCTCCGACCACGAGAAGCAACCGTCCCTCCCGCGCGTGCACGATTCGCGCCGCTCAACGGCTCTATTCCTCGCCGCCGGTAATTGAACGGAAACCGAAGAAGGAACAACGGCGGCAGCGTGAGAGGGAGAGGGAGAGGGAGGATTCTCCGGAGTCTTCACCTTCTCCGCCGTCACAATGCAGTAAAATCGTTACGCCGTTGGTTGAATCGCCGTCTGAGTCGCAGTTGCCGCGGTGGAAACTCCGGTCGATGTGGGAGTTAGCTTCCGTACTCAATTTCTTGAATGTGAGAAATGTGATTTTTTTTTTTCATTTGGGTTGTGTTACTTTTTGCTTTTGTTCTGAAAAGTTTGATTTTTTTTTTTTTTTTTATTGTTGCAGCTGTTTAGGCCTCTGCTGAATATCTCACTTGAATTCTCTGCTGAAGAGTTTGAGACTGCTCTTCTTAACCCCAATGACACTTTGTTTTACATTCACATGTCTTTGTTAAAGGTTGATGCTTTTTCTTCAACTTTATGGCAATGATAATATTGTTAATATTCTATCATGATGATGCTTATTTGCTTTCTTTGTTGATTTTTGTTAATGTTGCAATGTTTGTGCTTTCTTAGATTCACATTGAATTGCAAATTGTAGTTTTTTAGCTAGTTTGGTTGCATTGTGTTTGACCATAAGAGAAATTTCAGAGCTGTGAAGTGGGTTTTTTTTTTGTTGTTGCATACTCATTGGAAATTGCTGGTTTTCGTTTTGCATTGCTTTCACTTATTCTTGTTCCAAGCATAAATGAAGCCATGTGATTTGGGGATGTCTGTATGACATAGGTGAAAACTTGCCTAAATTTTCTAGAGTTGAGTGAATCTGACTTACATTTTGCGTTGCTCTTGGGTATTCTTGTTCCAAGAATAAATGCAGCAATGTGTTTTGAGGATGTCTTTATGACAAAGGTGTTAGGTTGGCTTGTCTAAATCTTCTATCTGAGTGGGTTTAACGTGGGTGATAGACGTGACGGATGCCCAACGGCTGGGACTTGTGATGAAACTTTATCTGATTACATTACTAATTGATGATATGGCATTGAACTTGACCATTATAATATTCTGAGATGATAATAATTGCTTGTGACTGAATTGCATGCTTGACAGAGATTGGTAAGCAGAGAGAAGGTACTTGATTGGGAGTTTTTTTATTGTTTAGTTGTATGTTAGACCCTTTGTTTACTTTCTAAAAGTGATAAGTATGAACTTTCACTGTTCCTTTTATCCATGTGAGTGTCAAATCGGGGACTTGTTTGTTTGTGATGCTCTAAATTAAAGGCCCAATTTACCTCAAAAGAGTAGAATGAAACCGTGACGGGTTTCCGGCTTTCTGCCATGGTCAGCCATCCGCAATCAAAACATTAGTCTCTTGTAAGGGGGTGGATATGTTGTTTAGTGGCTAATATTAAATTAGAGTAGGGCAAAGTCAAGAATGCTTGTTTAAAAAATACTGTACTTCAAATCCTGCAAGAGGTGTCTGGAGTTGTTTCAGCCACCACAATGATATCTTTCAACGTCTATTTTATTACCTTTAGAAAGTTGTACTTTCTTATCTCGTGTTTGCAAAGCTCATACCGGTTTGATATTAACATTTTTTATACCTTTTGCTAGGCAATCCCTCCAATTACGCGAGTGGCACTCACACGTGATACTTGGATAACCATATTATGCAGAAAATTGAGAGATTGGTGGCATTGGGTAATAATATACTTTTACTTTGTGTGCTTATATTTAATTAATATACGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTTAAAAAATTTGAGAGCTTATAAGAGGATGGAATTCATGTGCAGGTTGCCGAGGGGGATCTTCCGATTGTTGCTTCACAAGGGTAAATATTATTGCAACATTTAAACTCCTATAATGTTAATCTATACAATTCCCTAGTCTCAATTTATGCTTAACTTGACAGGGCGGAGATTGAAGTATATAAATCACTTGATCCAGCCATCCGTGTTACAATCTTAAAAGCATTGTGCGACATTCGTGTTGAGGTATTATTAATGTTGATTTATCTGTATATTATCTTTTAATCATAAATGGGTGAACTTTGGTATGGTAGGATGACATTCCTTTCCCTTATGCGAACTTGAATATTTGTGGATGATTAGGCATGGTTGATTCATGCCATGCCAGGCTAGAATGAACTGCGATTATGTATGTGCATGACATTATATCTTTTTTCCTATGTTTTTGTTTTGTTCTGTTACAACGAGTCTGTTCTGGTTTATTTTTCTTGCATCTTATCTTTCAAATAAAGCCGTTCTTTATACTTGTGTTGTTAATAAGGTTGATCAGCGTCAATATATTGCCATGTCATGTATTACAATCCACATTTACTTGTGGCCGTGTGGTGTTTTCTTTTTCAAAGACCAAAGCCTTCTCTGTTTGATTAGCCCTTATTTTCCATGGATCCTTTTTTTTGGGGGGTAGTCAAAACCCACTGGGTACATCCACAATTCCCCCTTGGCAGAGAAACAATGGCCTGGCATGGTCTTACTCTGATTATCCCTTTTTCTATTTTACCATTGATGTAACGATCAAATTTGAGCAATATCTTGCAGCAAGAAGATATCAGAAATTATATTGACAACTCAGTCAAACATGGTGTTCAACTTTCAACATTCCGTAAAGAGCGTATAGGAGGTGATTCAAATGGAATTTCTTATTGGTAATATACTTTTGCTTTCCGTTCATCGTGGTCAAATTTGGAATTTTATATTAGAAAGTTATTGTACATGTAAGTCTGTTTGTAGTTTTATTCATTTGAAATTTGATTACTGCAGGTATGAAGATGACCCCATGATTGGTCATAGGTTATATCGAGAAATAAGAAAAACTGAAGTGATTCAACCAAGGAAAGGGAGAGCAAGAGGTTCCCATGTTCTCTCTAATACGTCATACCAGTGGGAAGCAGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGTAAGTTGCTGCTTTAGCTGGTTGATCTATTCTTGTTAATTACGACTTTCCATGGAACAGTGAACATGTAGTAATTGTTGGGTTGATTGCTTGGAGTTGGTGTTATAAATTGTTAAGCCAGATAACAAATCACTTAAAAAGCTTAAAGATAAATACATCGTTTTGTTGGGAACCACAAAATGTTTCCTATTTTTTTTTTTTTTTATTATTAGAAATCCCAACTTGTATTCAAAGGAAACTTAAAATACAAAACTGTAACAGGGTAGGAATTCCAAATTACATATTGTCTATGAATTACAAATACATTAAATTCACAAATTATCTAACAGTGCCTATTCATAAGTTAAATGATTTCATGTTTAGAATCACCAGAGATTCTTAAAGATTGTATTAATATTTATCTCATTATTCAATTTTAGAAGGCTGCTAATAAATCATTATTTTATGTCGTTTCACAAGGCTGCTATTAAATTATTACTAGCATACTGAAGCTATTATGGACAGATTGAAATTTTTTGTGGTTGAATAGGATTTGACTAACCTGATTTGAGAAAGTTTCTGCGAGAATTGTTCATGGGTTCACTATCGATGGGAACCTTTTCCTACTATGTGCACAAAAAAACTATATTACACTAGGAAGAGAAATTTGCTAATGCTTGCAGAAGCAAGGCAAGTAGAAGAAAATCGATAACATACCCTTTTGGAATCATCCCATTTGCTATCTGTGGTGGAAAAAGTACCATGTGCAAATTATCAGAGAATCACCATAAAATGACAGCTTGATTTCTGAAAATCCAGGACAATTTTCTCCAATTTAGTAGAACTTAAACATACATATGTTATGAGTGCTTATCGGTTTTACGTTTTAGTGGTTTTAAACAAAGGCATGCAAAATCTTTTGCAATCTTGGGATGAATTGCTCTCAAAAAAACCCCATAAATCTGTACATCTTTGTCTAGCATGTTTCATGGTTAATACCTAAATCTGATTGAATCAGACAGTTATTTATTTTTGAACTCGCAAGCAATCTTTAACCACACAGGTCGAAGTTATTTGCCACAATTATTTGATGAAATCAGATGTTTAATGTGGAAGCAATTGTCATGTCAATTGTTTGATATTCTACTTTTTATCAGTGTTATTCTAATTTATACATAAAATTTTAATAATGCTGATATTTGTTTAAATCCAGATGAATGGTTCCGCCCTTTTTTTTCTTTCCATCTTTAGTTATTTTAGGATATAAGAAACCAAAGAAAAGAATTGGGTACCCTTTCTGCTGCTTTTATTTTAAATCGCATATACTTTTCCTATATTTAATAAATTCTTTCACCTGTTTACTCAGGAGAAACTTTTCTCTAGTAAAAACAGAACAGAGACTTCTGTTGGGAAAAAGCTGAAGATAGACATGCTTCCAGAAATTGAGAAAGTTCACAAGGTACTCTAGGGTTGAGAAATTTGAGTAGAATTGGTATTCTAATTATTCAACTCAAAGTGTGCTATTTTTTACAAAAGTAAAAGAATCTTGATTTGTGCTCCTTTAAGGATCTTAGTTACATTTTTAACCGATATAAAATATGTTGGCACAGAAAAAAGAGAGATTGCTGAAAAAGCAACACAGAGAAGCTCTTCTTCTTGATAATTACTTGGTTACCGATGGGCATTCTGCTGGGCGTGCACTTCGTGACAGGAAACATGTAACTTACACTTTTGGTAAGAGCAAACAGTTCAATTATAACTCGTTCCAACATTTTCACAGTGTTGGTAGTTGATGCCTATATTACATAAGGATGGATTTGAATTTTGATATGACAGAAGGGAGTTTTCCCTTTTGTTCTCGTGTTCTTTATACCAGTTTTCTAGTCCTTGTGTTTTAGTCTGCAGTCCTCCTATAAAATGCTAGAATGTCCGTAAAAACTCCACTGTATCATAATCATCTACATCATGCCTTTTGGGGAATATCTGGTTTTAGTAGTACTGCCCTTTACGGCTTTACCCAAGGGTGAGGGGGCTGGTAGAGTTGCTATAGTGATAATGTATTGAAACTTTCTGGTTACTCCTATCTAATAAATGTCATATTGAATTTTTCCTATTTACGATGGTTGGCCCTTTTCAACATGGTAGATTTTTTGACAAATCAAGTTTTTAGATACCAAAAAAAAATAATAATCAAGTTTTTATGCCATATTTGGTTTTTGGTAATATAAGGCGAGATTTAGCACAATGGTGAGATTGCACTTGATACCCTATGACATCGTGGTCACTGATTTTAGTTGTAGAAACAACTTCTCCCATGCTGCCTTTGCCTCATGATTATCACAATGGTTTTAGATTTATGATCAGCCACCTTTTCTTTTTTAAATCATTTTGGTTCAAGATCCAACAAATAAAAGTAAAATTAGTTACATCCTACCATTGTGGTGGTGATATGTGGTGAGGCAATTTAGAAATGAGTAAATTCCTTGTCACATTTATTTTTGGTTGGATAGTAATCATCTTACATCCAGAGTATACACTATGTGCTTGTTTACACCAACCTAACTTTTGTCATTATTGTCGTTGCAGATGATTATGATCGATCCATCAATGAGGCAATCAAAGTAACCAAGTATGTGCTAATACCCTTTCCGTCTGTGTTTGTATTTGTTGTGTATGGGGAAGGAGATGGGTCAGTCATACTCATTCACTGATACTGTGTTCTCATGGCATATGTATTTTTTTTCCTTCATTGTCAGGCGGAAACAGACATCTCCAGAACCTATGCCCAGGAGAGAACCAATAGCAAAATCTGACGCTCAAACTAATGGTAACCATGGTCCTTCACACGCAGCACAACATCAGAATTTTGGTATCTCATCTACAGAATCACCCGGTTCTGACTCTGATGAATACGATAATACTGACAATTTGGACCGAAGGTGTGTAATATTTATTTCTTCCAAACCAGCTCAGATGCCTTCCATTTAAATTTTGACTAATAATTTCATTTTAACATCAGCGGTCGTCGAAGAACAAAACCTAAGCGGTATTCAGAGAACGAGTTTGTTGAAGAAGTATCGGATTATGAGCCAGAGTTTGACAGTGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAGTATCTCAAGAAACGCAAGCAGAGAAGGAAGCATTCTAGTAGCTCTGAAGGAGATGAAGAAGATGAATGGGATGATGATAATGTAGAAGATGAAGAAGAAGATGAAGATGATGAGGAAGACTCGGGAAGCATCAGCGAGGATAGTGACAAACCCCGCAAAGTCAAACGATTGCCTGGCCGAGCTAGAAGGGAAACTAAACGCAGGTCTGTGGGTGAGATTCAATCAAGTCCAAGACGCAGTAGGAGGGCTACTAGAAATCGTATAGATTACCGACAATATGAGATGTCGGATTCAGAAACCGAGTTCACCAAACCCAAGAAGTCTATTGCATCAGCTGATCACTCAGATCCCAGCGAGAATGAGAATGAGATTGAGAATGAGAACGAGAATGATAATGAGAATGAGAATGGGGAGTATGTGATGAAAAGTGAGGATTCAGATAGCATTGAAGACGGAGATCATGAAATGAAAGTAGACGAGCCCGTTGTTGCCCCTGACACTGAAGTTGAAGAGAATGAACAAAACCAGCCTCCTGAAAAGTCAAGTAGTCCTCCTGGTCAAGATGAAGTCGAGGGCACAGGAAAGAGACGTTTCCTTGATTTGAATGAGCTTGCCCCTAGCCCTGGTTTTGATGATGGTCCAAATACAATTATGAAAGATGAAGACAATGACTACTGA

Protein sequence

>MS.gene059919.t1

MSHGSPSPLPADRSPTSPEPDSQNPTATDAVPKEETATAPPPPTTRSNRPSRACTIRAAQRLYSSPPVIERKPKKEQRRQREREREREDSPESSPSPPSQCSKIVTPLVESPSESQLPRWKLRSMWELASVLNFLNLFRPLLNISLEFSAEEFETALLNPNDTLFYIHMSLLKAIPPITRVALTRDTWITILCRKLRDWWHWVAEGDLPIVASQGAEIEVYKSLDPAIRVTILKALCDIRVEQEDIRNYIDNSVKHGVQLSTFRKERIGGDSNGISYWYEDDPMIGHRLYREIRKTEVIQPRKGRARGSHVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTETSVGKKLKIDMLPEIEKVHKKKERLLKKQHREALLLDNYLVTDGHSAGRALRDRKHVTYTFDDYDRSINEAIKVTKRKQTSPEPMPRREPIAKSDAQTNGNHGPSHAAQHQNFGISSTESPGSDSDEYDNTDNLDRSGRRRTKPKRYSENEFVEEVSDYEPEFDSDDDIVGEAVYDEEYLKKRKQRRKHSSSSEGDEEDEWDDDNVEDEEEDEDDEEDSGSISEDSDKPRKVKRLPGRARRETKRRSVGEIQSSPRRSRRATRNRIDYRQYEMSDSETEFTKPKKSIASADHSDPSENENEIENENENDNENENGEYVMKSEDSDSIEDGDHEMKVDEPVVAPDTEVEENEQNQPPEKSSSPPGQDEVEGTGKRRFLDLNELAPSPGFDDGPNTIMKDEDNDY