Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57190.t1 | XP_003611639.1 | 98.6 | 1030 | 14 | 0 | 1 | 1030 | 1 | 1030 | 0.00E+00 | 1434.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57190.t1 | F4JS25 | 65.8 | 1061 | 315 | 9 | 3 | 1030 | 4 | 1049 | 2.6e-229 | 797.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57190.t1 | G7K3X6 | 98.6 | 1030 | 14 | 0 | 1 | 1030 | 1 | 1030 | 0.0e+00 | 1434.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050646 | MS.gene57190 | 0.837996 | 3.74E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene57190 | 0.820378 | 7.08E-53 | -1.69E-46 |
| MS.gene053620 | MS.gene57190 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene57190 | 0.819982 | 8.72E-53 | -1.69E-46 |
| MS.gene056519 | MS.gene57190 | 0.835376 | 1.74E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene57190 | 0.815903 | 7.28E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene57190 | 0.809773 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57190.t1 | MTR_5g016190 | 98.544 | 1030 | 15 | 0 | 1 | 1030 | 1 | 1030 | 0.0 | 2115 |
| MS.gene57190.t1 | MTR_5g016190 | 98.182 | 770 | 14 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1560 |
| MS.gene57190.t1 | MTR_1g079510 | 22.568 | 257 | 199 | 0 | 289 | 545 | 246 | 502 | 1.46e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57190.t1 | AT4G37460 | 63.474 | 1065 | 333 | 14 | 3 | 1030 | 4 | 1049 | 0.0 | 1340 |
| MS.gene57190.t1 | AT4G37460 | 61.361 | 911 | 291 | 14 | 3 | 874 | 4 | 892 | 0.0 | 1089 |
| MS.gene57190.t1 | AT3G04240 | 24.561 | 228 | 154 | 3 | 324 | 542 | 5 | 223 | 4.73e-12 | 70.9 |
| MS.gene57190.t1 | AT3G04240 | 24.561 | 228 | 154 | 3 | 324 | 542 | 238 | 456 | 7.28e-12 | 70.5 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAATCCACAAAAGAATT+TGG | 0.134871 | 5.3:-8992600 | None:intergenic |
| AAGTTGTTGGCGAGGATTTC+TGG | 0.167689 | 5.3:+8991591 | MS.gene57190:CDS |
| CATGATGTTGCGTCAACTTT+TGG | 0.210444 | 5.3:+8992675 | MS.gene57190:CDS |
| TTCTCACACACCCATGATTC+TGG | 0.213242 | 5.3:+8990466 | MS.gene57190:CDS |
| AATTCATCGAATGAAATTAA+TGG | 0.248067 | 5.3:+8980337 | MS.gene57190:CDS |
| CTCTTCTAATTTCCCATCAT+TGG | 0.248614 | 5.3:-8990676 | None:intergenic |
| AAGGAAAACGGATGCTTTAT+TGG | 0.254395 | 5.3:+8980216 | MS.gene57190:CDS |
| TCTCTTCACCTTTCATAGTT+TGG | 0.257090 | 5.3:-8990515 | None:intergenic |
| CTCAAATTATCAATAATATC+AGG | 0.268966 | 5.3:-8980562 | None:intergenic |
| TGCAGCGAGGAGTTTAATTC+TGG | 0.274412 | 5.3:+8990437 | MS.gene57190:intron |
| GCTGCATAAGCACGTGATTA+AGG | 0.277328 | 5.3:+8979447 | MS.gene57190:CDS |
| ATTTGGATCCAAGTTTAAAA+TGG | 0.278214 | 5.3:-8992583 | None:intergenic |
| TTACGATGCTGCACTGGATT+TGG | 0.282905 | 5.3:+8983931 | MS.gene57190:CDS |
| TTTGTTACTTGCTGCTAATA+TGG | 0.285236 | 5.3:+8992515 | MS.gene57190:CDS |
| AATCAGATTCTTCAAGTAAT+AGG | 0.289042 | 5.3:+8980380 | MS.gene57190:CDS |
| GGTCAGGCTCGGGCAGCCTT+GGG | 0.289219 | 5.3:+8981280 | MS.gene57190:CDS |
| AATTGCCTTGGACCAGTCTT+TGG | 0.290419 | 5.3:-8979249 | None:intergenic |
| GATAGAACTTGAAGAGCTTT+TGG | 0.292557 | 5.3:+8980294 | MS.gene57190:CDS |
| GCTTACTGTGGTGAAAATTA+TGG | 0.299897 | 5.3:+8992279 | MS.gene57190:CDS |
| GAGGAGTTTAATTCTGGATT+TGG | 0.307287 | 5.3:+8990443 | MS.gene57190:CDS |
| TAAGTCTGCCTACACATATT+TGG | 0.309097 | 5.3:+8982559 | MS.gene57190:CDS |
| ATTACTTGAAGAATCTGATT+TGG | 0.309457 | 5.3:-8980377 | None:intergenic |
| CACAGGGTTTCCAAGTTGAT+TGG | 0.320928 | 5.3:+8992556 | MS.gene57190:CDS |
| AGGTCAGGCTCGGGCAGCCT+TGG | 0.328686 | 5.3:+8981279 | MS.gene57190:CDS |
| GGTCATGCACTTTCGGCTTT+GGG | 0.330622 | 5.3:+8980193 | MS.gene57190:intron |
| TGCTGCACTGGATTTGGAAT+TGG | 0.330853 | 5.3:+8983937 | MS.gene57190:CDS |
| CTGCTTGTGTGCAGCTGGAC+AGG | 0.334796 | 5.3:+8982531 | MS.gene57190:CDS |
| AGGTCATGCACTTTCGGCTT+TGG | 0.343493 | 5.3:+8980192 | MS.gene57190:intron |
| AGGGAAAGTGAACTTAAAAC+TGG | 0.343623 | 5.3:-8980683 | None:intergenic |
| TCATCTAGGTCATGCACTTT+CGG | 0.345299 | 5.3:+8980186 | MS.gene57190:intron |
| ATCATTCATCTTTCCAATGA+TGG | 0.347390 | 5.3:+8990663 | MS.gene57190:CDS |
| TAATTTCCCCAGTCAGAATA+GGG | 0.347592 | 5.3:+8987921 | MS.gene57190:CDS |
| CACAAAAGGTCTCCAAGATT+TGG | 0.355594 | 5.3:+8987812 | MS.gene57190:CDS |
| AGCTTGTTCACCCACACAAC+AGG | 0.362890 | 5.3:-8988087 | None:intergenic |
| TCTGACCTTTATAAAGTTGT+TGG | 0.363759 | 5.3:+8991578 | MS.gene57190:CDS |
| TTTACTCGATAGCTGTTAGA+TGG | 0.373102 | 5.3:+8988040 | MS.gene57190:CDS |
| AGGATTTCTGGTCGTCTACT+TGG | 0.376562 | 5.3:+8991603 | MS.gene57190:CDS |
| TCGGTTCGTTGCGAAGTTGC+AGG | 0.380303 | 5.3:-8979206 | None:intergenic |
| AGCTTTCTGTTATAGTCAAT+TGG | 0.386717 | 5.3:+8979423 | MS.gene57190:CDS |
| AGTTGGATTTGCAGTTATGC+TGG | 0.389585 | 5.3:+8992491 | MS.gene57190:CDS |
| TTCATTCATCTTAAGAGCTC+AGG | 0.389755 | 5.3:-8992722 | None:intergenic |
| CCTTTCTGCTTGTGTGCAGC+TGG | 0.395168 | 5.3:+8982526 | MS.gene57190:CDS |
| GGAAACCAGGGCAATCATAT+TGG | 0.396108 | 5.3:-8986681 | None:intergenic |
| GCATGCAGCTCGTAAATATA+AGG | 0.396667 | 5.3:-8983793 | None:intergenic |
| TTCCATGCCTCACCAGCAGC+TGG | 0.397972 | 5.3:-8981250 | None:intergenic |
| AGTGTGACAAACCTGATAAA+AGG | 0.402050 | 5.3:-8983993 | None:intergenic |
| GACAGTCTTTGCAATATCTA+AGG | 0.403332 | 5.3:-8990601 | None:intergenic |
| TTAATTTCCCCAGTCAGAAT+AGG | 0.404961 | 5.3:+8987920 | MS.gene57190:CDS |
| TGCTATTGAAGTTGCACAAA+AGG | 0.405224 | 5.3:+8987798 | MS.gene57190:CDS |
| GCTATCAAAGATTTGACAAC+GGG | 0.407291 | 5.3:+8983741 | MS.gene57190:CDS |
| CTGATATTATTGATAATTTG+AGG | 0.412387 | 5.3:+8980563 | MS.gene57190:CDS |
| AAGATTTCCATTCCGCTTGA+AGG | 0.413667 | 5.3:-8987840 | None:intergenic |
| GCCTTTGAAACATCTTCATC+TGG | 0.413960 | 5.3:+8987970 | MS.gene57190:CDS |
| AAACTCACTGTTAAACTTTG+AGG | 0.415379 | 5.3:-8986157 | None:intergenic |
| TTTGCGTGAATCTTTAAGAA+AGG | 0.415664 | 5.3:+8986576 | MS.gene57190:CDS |
| AAACGGATGCTTTATTGGTA+TGG | 0.419183 | 5.3:+8980221 | MS.gene57190:CDS |
| CCATGCTTAGAGTTTGAGTT+GGG | 0.419373 | 5.3:-8987871 | None:intergenic |
| GGATTTGGAATTGGACTCAA+TGG | 0.420957 | 5.3:+8983946 | MS.gene57190:CDS |
| ACTCAAGTTCTGCAAATTGA+TGG | 0.421842 | 5.3:+8983170 | MS.gene57190:CDS |
| CCTCTTCCTATCAGTGCCTC+AGG | 0.422373 | 5.3:-8981077 | None:intergenic |
| GTGTAAAATGTCTGCTGTGT+TGG | 0.424119 | 5.3:-8982139 | None:intergenic |
| TTTGGCTTGTCCCAGAATCA+TGG | 0.425319 | 5.3:-8990477 | None:intergenic |
| TATTGCCACTTAACTTAGCT+TGG | 0.427988 | 5.3:-8980426 | None:intergenic |
| CCTCGCCAACAACTTTATAA+AGG | 0.431082 | 5.3:-8991583 | None:intergenic |
| ACAACGGGGTTGAGCATTGA+TGG | 0.433032 | 5.3:+8983756 | MS.gene57190:CDS |
| TTCGGCTTTGGGAAGGAAAA+CGG | 0.436548 | 5.3:+8980204 | MS.gene57190:CDS |
| TGCATCATAGTCTTCCCATC+TGG | 0.440660 | 5.3:-8991938 | None:intergenic |
| CACTGTACCTGACGTCTATT+AGG | 0.441743 | 5.3:-8986706 | None:intergenic |
| GCAGAAGTCTGCTCTTATAC+AGG | 0.446954 | 5.3:+8986633 | MS.gene57190:CDS |
| ATCGAGGATTCGAATTGCCT+TGG | 0.449257 | 5.3:-8979261 | None:intergenic |
| TGTAAAATGTCTGCTGTGTT+GGG | 0.449376 | 5.3:-8982138 | None:intergenic |
| AAATGGCTTCCCAATCAACT+TGG | 0.449609 | 5.3:-8992566 | None:intergenic |
| AAGAATCTGATTTGGCTTGT+GGG | 0.449855 | 5.3:-8980369 | None:intergenic |
| GTCAGGCTCGGGCAGCCTTG+GGG | 0.451685 | 5.3:+8981281 | MS.gene57190:CDS |
| GGCGTTCTGTTCCATGCAAT+GGG | 0.453824 | 5.3:+8983341 | MS.gene57190:CDS |
| ACAGGGTTTCCAAGTTGATT+GGG | 0.454700 | 5.3:+8992557 | MS.gene57190:CDS |
| TTGCGTGAATCTTTAAGAAA+GGG | 0.458380 | 5.3:+8986577 | MS.gene57190:CDS |
| TCCCATCTGGCAGGTGTACA+AGG | 0.461353 | 5.3:-8991925 | None:intergenic |
| GAAGATTGAACCAGATGTCT+TGG | 0.463030 | 5.3:-8979310 | None:intergenic |
| GGTCTGGCATTGTCTTCAAT+TGG | 0.463090 | 5.3:+8982680 | MS.gene57190:CDS |
| GTAAGAAATTCTCTGTTGCT+CGG | 0.464767 | 5.3:+8980734 | MS.gene57190:CDS |
| TCCAAAGAATGTATGTGAAA+AGG | 0.466094 | 5.3:+8986537 | MS.gene57190:CDS |
| TTGAAGGATACGCCAAATCT+TGG | 0.467124 | 5.3:-8987824 | None:intergenic |
| CGTCTATTAGGCAGGAAACC+AGG | 0.467863 | 5.3:-8986694 | None:intergenic |
| TAAGAAATTCTCTGTTGCTC+GGG | 0.470291 | 5.3:+8980735 | MS.gene57190:CDS |
| ATTTATCAGCATCGTATGGC+AGG | 0.473906 | 5.3:+8987769 | MS.gene57190:intron |
| TCAGGCTCGGGCAGCCTTGG+GGG | 0.476210 | 5.3:+8981282 | MS.gene57190:CDS |
| GAAGAATCTGATTTGGCTTG+TGG | 0.477457 | 5.3:-8980370 | None:intergenic |
| GGAAGACTATGATGCAGAAA+TGG | 0.482699 | 5.3:+8991945 | MS.gene57190:CDS |
| GATCATTTGCAGGTCAATGA+AGG | 0.485855 | 5.3:+8980875 | MS.gene57190:intron |
| GCATACCCTGAGGCACTGAT+AGG | 0.487195 | 5.3:+8981071 | MS.gene57190:CDS |
| AACGGATGCTTTATTGGTAT+GGG | 0.487540 | 5.3:+8980222 | MS.gene57190:CDS |
| TCAGGTGTCCCCATGCTTCA+AGG | 0.487898 | 5.3:-8982760 | None:intergenic |
| TTTGCTGGTTTGATATTGAT+GGG | 0.487906 | 5.3:+8986178 | MS.gene57190:CDS |
| GAAGAGGAGAGGTCAGGCTC+GGG | 0.488598 | 5.3:+8981270 | MS.gene57190:CDS |
| CCACCTCTATCCAAGACATC+TGG | 0.489478 | 5.3:+8979300 | MS.gene57190:CDS |
| TCTCACACACCCATGATTCT+GGG | 0.489880 | 5.3:+8990467 | MS.gene57190:CDS |
| TTGTGGATTCAGTCAAAAGT+TGG | 0.490258 | 5.3:+8992610 | MS.gene57190:CDS |
| TAAAAGTTTCCTTGAAGCAT+GGG | 0.490945 | 5.3:+8982751 | MS.gene57190:CDS |
| CACAACAGGGTCACAAGGCT+CGG | 0.491285 | 5.3:-8988073 | None:intergenic |
| TGCAACAGTACTGCATTTGA+AGG | 0.491467 | 5.3:+8991626 | MS.gene57190:CDS |
| TGGCGTTCTGTTCCATGCAA+TGG | 0.492835 | 5.3:+8983340 | MS.gene57190:CDS |
| GCCATGCTTAGAGTTTGAGT+TGG | 0.492933 | 5.3:-8987872 | None:intergenic |
| AAACTCTAAGCATGGCAAAC+GGG | 0.494302 | 5.3:+8987879 | MS.gene57190:CDS |
| TCATTCATCTTTCCAATGAT+GGG | 0.494468 | 5.3:+8990664 | MS.gene57190:CDS |
| GAACCAGATGTCTTGGATAG+AGG | 0.495529 | 5.3:-8979303 | None:intergenic |
| TTCTACAGGAAACAGCTTGA+AGG | 0.501389 | 5.3:+8991727 | MS.gene57190:intron |
| CAAACTCTAAGCATGGCAAA+CGG | 0.502444 | 5.3:+8987878 | MS.gene57190:CDS |
| TGCTTGTGTGCAGCTGGACA+GGG | 0.503059 | 5.3:+8982532 | MS.gene57190:CDS |
| TGGAAAGTAACGGACAACTT+TGG | 0.503878 | 5.3:-8990495 | None:intergenic |
| CCTGATAAAAGGCAAGGCAC+TGG | 0.505143 | 5.3:-8983982 | None:intergenic |
| CTCTGAAGGTGACAACCTCA+TGG | 0.507207 | 5.3:+8992643 | MS.gene57190:CDS |
| TGCACCTCCCCTATTCTGAC+TGG | 0.507616 | 5.3:-8987929 | None:intergenic |
| CAAGGATTACGATGCTGCAC+TGG | 0.508364 | 5.3:+8983925 | MS.gene57190:CDS |
| GCAGCAGTTCCTCTAGATAG+TGG | 0.508530 | 5.3:-8992468 | None:intergenic |
| CTTCAAGCTTATATTCTGAA+AGG | 0.508679 | 5.3:+8979505 | MS.gene57190:CDS |
| CTTCCAGCCGTCACATGTCA+TGG | 0.510073 | 5.3:+8988010 | MS.gene57190:CDS |
| GTTGGATTTGCAGTTATGCT+GGG | 0.511092 | 5.3:+8992492 | MS.gene57190:CDS |
| ATAAAAGTTTCCTTGAAGCA+TGG | 0.511831 | 5.3:+8982750 | MS.gene57190:CDS |
| GCTACAGAGCTTCGCTAGCT+CGG | 0.513986 | 5.3:-8979225 | None:intergenic |
| GCTTTATTGGTATGGGAGCA+AGG | 0.514580 | 5.3:+8980229 | MS.gene57190:CDS |
| AGTCAGAATAGGGGAGGTGC+AGG | 0.514865 | 5.3:+8987931 | MS.gene57190:CDS |
| AGACATTCAAGAGCCTTTGT+CGG | 0.515197 | 5.3:-8983146 | None:intergenic |
| TAAATATAAGGACTCAATGT+TGG | 0.517773 | 5.3:-8983781 | None:intergenic |
| AAATGTGATGGCCAAGTGAA+TGG | 0.518122 | 5.3:+8980535 | MS.gene57190:CDS |
| GGAAGAGGAGAGGTCAGGCT+CGG | 0.524536 | 5.3:+8981269 | MS.gene57190:CDS |
| GGCGTATCCTTCAAGCGGAA+TGG | 0.525729 | 5.3:+8987833 | MS.gene57190:CDS |
| ACCTTGTACACCTGCCAGAT+GGG | 0.528463 | 5.3:+8991924 | MS.gene57190:CDS |
| GCCTTGTGACCCTGTTGTGT+GGG | 0.530489 | 5.3:+8988077 | MS.gene57190:CDS |
| TTGGCTTGTCCCAGAATCAT+GGG | 0.530934 | 5.3:-8990476 | None:intergenic |
| TTTCCATGACATGTGACGGC+TGG | 0.531208 | 5.3:-8988013 | None:intergenic |
| TCATAGTCTTCCCATCTGGC+AGG | 0.533339 | 5.3:-8991934 | None:intergenic |
| CACCTTGTACACCTGCCAGA+TGG | 0.533844 | 5.3:+8991923 | MS.gene57190:CDS |
| CTCAAGTTCTGCAAATTGAT+GGG | 0.534616 | 5.3:+8983171 | MS.gene57190:CDS |
| TCAAATTATCAATAATATCA+GGG | 0.534762 | 5.3:-8980561 | None:intergenic |
| AGTTCATAGATACCTGAGTC+AGG | 0.535673 | 5.3:-8982778 | None:intergenic |
| AGCTCTGTAGCACCAAAGAC+TGG | 0.536173 | 5.3:+8979237 | MS.gene57190:CDS |
| ACACAATCAGATATTGAAAG+AGG | 0.538111 | 5.3:+8981043 | MS.gene57190:intron |
| AAAATCCAATATGATTGCCC+TGG | 0.542859 | 5.3:+8986676 | MS.gene57190:CDS |
| GCACCTCCCCTATTCTGACT+GGG | 0.542944 | 5.3:-8987928 | None:intergenic |
| TTTCTTAAAGATTCACGCAA+AGG | 0.543748 | 5.3:-8986574 | None:intergenic |
| ATACAATATAATCCAGCTGC+TGG | 0.544254 | 5.3:+8981238 | MS.gene57190:CDS |
| ACCTATGCTCTCCCATTGCA+TGG | 0.547341 | 5.3:-8983352 | None:intergenic |
| CTTTGTATTGTCCGACAGCA+TGG | 0.547502 | 5.3:-8983818 | None:intergenic |
| GTTCACAGGAAGCATCCCAC+AGG | 0.548703 | 5.3:+8992539 | MS.gene57190:CDS |
| ATCCAGCTGCTGGTGAGGCA+TGG | 0.550015 | 5.3:+8981248 | MS.gene57190:CDS |
| ATACAGGCTGCAGACTCCAT+TGG | 0.550428 | 5.3:+8986649 | MS.gene57190:CDS |
| TTTCCTGCCTAATAGACGTC+AGG | 0.552298 | 5.3:+8986699 | MS.gene57190:CDS |
| TCTAGAGGAACTGCTGCAGT+TGG | 0.552355 | 5.3:+8992474 | MS.gene57190:CDS |
| CATGACATGTGACGGCTGGA+AGG | 0.554766 | 5.3:-8988009 | None:intergenic |
| GTCTATTAGGCAGGAAACCA+GGG | 0.555704 | 5.3:-8986693 | None:intergenic |
| GGCATGGAAGAGGAGAGGTC+AGG | 0.555821 | 5.3:+8981264 | MS.gene57190:CDS |
| ATGCACTTTCGGCTTTGGGA+AGG | 0.556315 | 5.3:+8980197 | MS.gene57190:CDS |
| GTACCTGACGTCTATTAGGC+AGG | 0.559295 | 5.3:-8986702 | None:intergenic |
| AGGTTGTCACCTTCAGAGAC+GGG | 0.559701 | 5.3:-8992638 | None:intergenic |
| GAGAGCCAAGCTAAGTTAAG+TGG | 0.560384 | 5.3:+8980421 | MS.gene57190:CDS |
| TCTACAGGAAACAGCTTGAA+GGG | 0.560865 | 5.3:+8991728 | MS.gene57190:intron |
| CTGCTGGTGAGGCATGGAAG+AGG | 0.561340 | 5.3:+8981254 | MS.gene57190:CDS |
| CTCTTCCTATCAGTGCCTCA+GGG | 0.561531 | 5.3:-8981076 | None:intergenic |
| TTTCATAGTTTGGAAAGTAA+CGG | 0.561725 | 5.3:-8990505 | None:intergenic |
| GTTACTTTCCAAACTATGAA+AGG | 0.565328 | 5.3:+8990507 | MS.gene57190:CDS |
| TATCAGGGCTTCCATTCACT+TGG | 0.566692 | 5.3:-8980546 | None:intergenic |
| CCTGAGGCACTGATAGGAAG+AGG | 0.568213 | 5.3:+8981077 | MS.gene57190:CDS |
| CTGCTGATAAATTTGATGCA+AGG | 0.572001 | 5.3:+8980479 | MS.gene57190:CDS |
| AGCATGGCAAACGGGTTCGA+AGG | 0.574319 | 5.3:+8987887 | MS.gene57190:CDS |
| ATATAATCCAGCTGCTGGTG+AGG | 0.576474 | 5.3:+8981243 | MS.gene57190:CDS |
| GCCAGATGAAGATGTTTCAA+AGG | 0.578336 | 5.3:-8987971 | None:intergenic |
| TGGCAAACGGGTTCGAAGGA+GGG | 0.578933 | 5.3:+8987891 | MS.gene57190:CDS |
| AGCCTTGTGACCCTGTTGTG+TGG | 0.579095 | 5.3:+8988076 | MS.gene57190:CDS |
| GAGGTTGTCACCTTCAGAGA+CGG | 0.579821 | 5.3:-8992639 | None:intergenic |
| TCTTATTTATCAGCATCGTA+TGG | 0.580406 | 5.3:+8987765 | MS.gene57190:intron |
| ATCATTTGCAGGTCAATGAA+GGG | 0.580881 | 5.3:+8980876 | MS.gene57190:intron |
| CCAGCTGCACACAAGCAGAA+AGG | 0.582032 | 5.3:-8982526 | None:intergenic |
| ATGGCAAACGGGTTCGAAGG+AGG | 0.583605 | 5.3:+8987890 | MS.gene57190:CDS |
| TCATTCATCTTAAGAGCTCA+GGG | 0.585162 | 5.3:-8992721 | None:intergenic |
| CTTAAAGATTCACGCAAAGG+AGG | 0.585713 | 5.3:-8986571 | None:intergenic |
| GGAAACAGCTTGAAGGGACA+AGG | 0.586249 | 5.3:+8991734 | MS.gene57190:intron |
| ACCCACACAACAGGGTCACA+AGG | 0.586433 | 5.3:-8988078 | None:intergenic |
| AAAGAGAGATCTTATGTCCA+CGG | 0.587772 | 5.3:+8990627 | MS.gene57190:CDS |
| CCCAACTCAAACTCTAAGCA+TGG | 0.589222 | 5.3:+8987871 | MS.gene57190:CDS |
| CCTTTATAAAGTTGTTGGCG+AGG | 0.589554 | 5.3:+8991583 | MS.gene57190:CDS |
| TATCTTTCCATGACATGTGA+CGG | 0.590789 | 5.3:-8988017 | None:intergenic |
| GGCTATCGAAGACTTGACTA+AGG | 0.590992 | 5.3:+8982101 | MS.gene57190:intron |
| AGGAATGAATTAAATAGCGA+AGG | 0.595091 | 5.3:+8980499 | MS.gene57190:CDS |
| ATGCAGAAATGGCGATGGCG+TGG | 0.598667 | 5.3:+8991956 | MS.gene57190:CDS |
| ATATAAGCTTGAAGAAGCAA+AGG | 0.599589 | 5.3:-8979496 | None:intergenic |
| TTGGCTATACCCGTCTCTGA+AGG | 0.599613 | 5.3:+8992629 | MS.gene57190:CDS |
| CCAGATGTCTTGGATAGAGG+TGG | 0.599907 | 5.3:-8979300 | None:intergenic |
| CAATGATGGGAAATTAGAAG+AGG | 0.605924 | 5.3:+8990677 | MS.gene57190:CDS |
| GCTTTCACGGGGAATAGCAG+AGG | 0.609159 | 5.3:+8980792 | MS.gene57190:CDS |
| TGCAGAAATGGCGATGGCGT+GGG | 0.610537 | 5.3:+8991957 | MS.gene57190:CDS |
| AGAGTTCAACACTGCAGTTG+AGG | 0.614458 | 5.3:+8982502 | MS.gene57190:CDS |
| TCCATGCAATGGGAGAGCAT+AGG | 0.616757 | 5.3:+8983351 | MS.gene57190:CDS |
| GCTAGAGCTTATCATTTGCG+TGG | 0.623608 | 5.3:+8983320 | MS.gene57190:CDS |
| TTGTGTGGGTGAACAAGCTA+AGG | 0.624390 | 5.3:+8988091 | MS.gene57190:CDS |
| GATAAAGTATTAACTAATAG+CGG | 0.625655 | 5.3:+8980616 | MS.gene57190:CDS |
| GCTGCTAATATGGAGTTCAC+AGG | 0.626051 | 5.3:+8992525 | MS.gene57190:CDS |
| CTATGATGCAGAAATGGCGA+TGG | 0.628482 | 5.3:+8991951 | MS.gene57190:CDS |
| CACCTCCCCTATTCTGACTG+GGG | 0.635038 | 5.3:-8987927 | None:intergenic |
| AATTTCCCCAGTCAGAATAG+GGG | 0.635231 | 5.3:+8987922 | MS.gene57190:CDS |
| GATTTGGCGTATCCTTCAAG+CGG | 0.636875 | 5.3:+8987828 | MS.gene57190:CDS |
| AGCATGGGGACACCTGACTC+AGG | 0.637621 | 5.3:+8982766 | MS.gene57190:CDS |
| GGAGAGTCTAGTAAATGTGA+TGG | 0.639158 | 5.3:+8980523 | MS.gene57190:CDS |
| TTGCTGGTTTGATATTGATG+GGG | 0.639545 | 5.3:+8986179 | MS.gene57190:CDS |
| AATCAACTTGGAAACCCTGT+GGG | 0.639831 | 5.3:-8992554 | None:intergenic |
| GCTTGTTCACCCACACAACA+GGG | 0.640471 | 5.3:-8988086 | None:intergenic |
| AGATTTATCAAATCCGACAA+AGG | 0.645653 | 5.3:+8983133 | MS.gene57190:CDS |
| AAAAGTTTCCTTGAAGCATG+GGG | 0.646755 | 5.3:+8982752 | MS.gene57190:CDS |
| GCAACAGTACTGCATTTGAA+GGG | 0.646890 | 5.3:+8991627 | MS.gene57190:CDS |
| GCTGCATGCTACCATGCTGT+CGG | 0.647794 | 5.3:+8983807 | MS.gene57190:CDS |
| TTCCCCAGTCAGAATAGGGG+AGG | 0.648452 | 5.3:+8987925 | MS.gene57190:CDS |
| GGGAAAGTGAACTTAAAACT+GGG | 0.650631 | 5.3:-8980682 | None:intergenic |
| CAATACAAGTGATAAATCTG+AGG | 0.655119 | 5.3:+8980444 | MS.gene57190:CDS |
| AGGACCCACCAAATATGTGT+AGG | 0.656129 | 5.3:-8982567 | None:intergenic |
| CAATCAACTTGGAAACCCTG+TGG | 0.656293 | 5.3:-8992555 | None:intergenic |
| GGCTATCAAAGATTTGACAA+CGG | 0.656617 | 5.3:+8983740 | MS.gene57190:CDS |
| TTCACAGGAAGCATCCCACA+GGG | 0.657987 | 5.3:+8992540 | MS.gene57190:CDS |
| GACAAACCTGATAAAAGGCA+AGG | 0.661747 | 5.3:-8983988 | None:intergenic |
| ATTGAGAAATGAGAGAATCG+AGG | 0.664474 | 5.3:-8979277 | None:intergenic |
| TAGCACCAAAGACTGGTCCA+AGG | 0.664799 | 5.3:+8979244 | MS.gene57190:CDS |
| CTGAGGCACTGATAGGAAGA+GGG | 0.665638 | 5.3:+8981078 | MS.gene57190:CDS |
| GGTGAGGCATGGAAGAGGAG+AGG | 0.672074 | 5.3:+8981259 | MS.gene57190:CDS |
| GCTCTCTGCAATGCTTACTG+TGG | 0.674990 | 5.3:+8992267 | MS.gene57190:CDS |
| AATGAATTAAATAGCGAAGG+CGG | 0.676104 | 5.3:+8980502 | MS.gene57190:CDS |
| GAAACAGCTTGAAGGGACAA+GGG | 0.685092 | 5.3:+8991735 | MS.gene57190:CDS |
| TGCTGTCGGACAATACAAAG+AGG | 0.685800 | 5.3:+8983821 | MS.gene57190:CDS |
| AAGTTCTGCAAATTGATGGG+AGG | 0.686691 | 5.3:+8983174 | MS.gene57190:CDS |
| TGGTGAATATAAGAAAGCTG+AGG | 0.687669 | 5.3:+8982700 | MS.gene57190:CDS |
| ATCATGATAGTCTTTCCATG+AGG | 0.718536 | 5.3:-8992658 | None:intergenic |
| AGAGGACTCTGCATACCCTG+AGG | 0.759786 | 5.3:+8981061 | MS.gene57190:CDS |
| CTATCAAAGATTTGACAACG+GGG | 0.780372 | 5.3:+8983742 | MS.gene57190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8979197 | 8992734 | 8979197 | ID=MS.gene57190 |
| chr5.3 | mRNA | 8979197 | 8992734 | 8979197 | ID=MS.gene57190.t1;Parent=MS.gene57190 |
| chr5.3 | exon | 8979197 | 8979321 | 8979197 | ID=MS.gene57190.t1.exon1;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8979197 | 8979321 | 8979197 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8979417 | 8979526 | 8979417 | ID=MS.gene57190.t1.exon2;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8979417 | 8979526 | 8979417 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8980194 | 8980813 | 8980194 | ID=MS.gene57190.t1.exon3;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8980194 | 8980813 | 8980194 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8980887 | 8980931 | 8980887 | ID=MS.gene57190.t1.exon4;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8980887 | 8980931 | 8980887 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8981053 | 8981154 | 8981053 | ID=MS.gene57190.t1.exon5;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8981053 | 8981154 | 8981053 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8981235 | 8981315 | 8981235 | ID=MS.gene57190.t1.exon6;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8981235 | 8981315 | 8981235 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8982102 | 8982168 | 8982102 | ID=MS.gene57190.t1.exon7;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8982102 | 8982168 | 8982102 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8982480 | 8982580 | 8982480 | ID=MS.gene57190.t1.exon8;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8982480 | 8982580 | 8982480 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8982680 | 8982787 | 8982680 | ID=MS.gene57190.t1.exon9;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8982680 | 8982787 | 8982680 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8983125 | 8983195 | 8983125 | ID=MS.gene57190.t1.exon10;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8983125 | 8983195 | 8983125 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8983316 | 8983372 | 8983316 | ID=MS.gene57190.t1.exon11;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8983316 | 8983372 | 8983316 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8983737 | 8983845 | 8983737 | ID=MS.gene57190.t1.exon12;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8983737 | 8983845 | 8983737 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8983923 | 8984003 | 8983923 | ID=MS.gene57190.t1.exon13;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8983923 | 8984003 | 8983923 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8986135 | 8986221 | 8986135 | ID=MS.gene57190.t1.exon14;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8986135 | 8986221 | 8986135 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8986514 | 8986720 | 8986514 | ID=MS.gene57190.t1.exon15;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8986514 | 8986720 | 8986514 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8987778 | 8988112 | 8987778 | ID=MS.gene57190.t1.exon16;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8987778 | 8988112 | 8987778 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8990442 | 8990528 | 8990442 | ID=MS.gene57190.t1.exon17;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8990442 | 8990528 | 8990442 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8990599 | 8990698 | 8990599 | ID=MS.gene57190.t1.exon18;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8990599 | 8990698 | 8990599 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8991557 | 8991648 | 8991557 | ID=MS.gene57190.t1.exon19;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8991557 | 8991648 | 8991557 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8991735 | 8991773 | 8991735 | ID=MS.gene57190.t1.exon20;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8991735 | 8991773 | 8991735 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8991891 | 8991981 | 8991891 | ID=MS.gene57190.t1.exon21;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8991891 | 8991981 | 8991891 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8992267 | 8992364 | 8992267 | ID=MS.gene57190.t1.exon22;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8992267 | 8992364 | 8992267 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| chr5.3 | exon | 8992455 | 8992734 | 8992455 | ID=MS.gene57190.t1.exon23;Parent=MS.gene57190.t1 |
| chr5.3 | CDS | 8992455 | 8992734 | 8992455 | ID=cds.MS.gene57190.t1;Parent=MS.gene57190.t1 |
| Gene Sequence |
| Protein sequence |
