Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57397.t1 | XP_003630285.1 | 93.5 | 231 | 12 | 2 | 1 | 231 | 1 | 228 | 2.20E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57397.t1 | G7LE39 | 93.5 | 231 | 12 | 2 | 1 | 231 | 1 | 228 | 1.6e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052253 | MS.gene57397 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene57397 | 0.806074 | 9.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57397.t1 | MTR_8g093850 | 93.506 | 231 | 12 | 2 | 1 | 231 | 1 | 228 | 3.47e-157 | 436 |
| MS.gene57397.t1 | MTR_8g093850 | 91.954 | 174 | 11 | 2 | 1 | 174 | 1 | 171 | 2.11e-109 | 316 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57397.t1 | AT5G64010 | 46.087 | 230 | 112 | 6 | 2 | 231 | 3 | 220 | 1.04e-56 | 181 |
Find 42 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCTTGAGCCTCTTTA+AGG | 0.148214 | 4.2:+8997347 | MS.gene57397:CDS |
| TTACCATCAGAGTTAGAATT+TGG | 0.227557 | 4.2:-8996592 | None:intergenic |
| TCGCTCCAGATGGATATTAT+TGG | 0.253401 | 4.2:+8996490 | MS.gene57397:intron |
| CAGATGGATATTATTGGAAT+AGG | 0.329644 | 4.2:+8996496 | MS.gene57397:intron |
| AAAGCAGGTGTTTCTAATAA+TGG | 0.335689 | 4.2:+8998113 | MS.gene57397:CDS |
| ATCAAATGTTCTCTTGTAGA+TGG | 0.339106 | 4.2:+8997381 | MS.gene57397:CDS |
| GTTAAGGTTTGTAATATAGT+AGG | 0.359262 | 4.2:-8998632 | None:intergenic |
| AGATGGATATTATTGGAATA+GGG | 0.359699 | 4.2:+8996497 | MS.gene57397:intron |
| TGTGCAGTTGACAAACATTA+TGG | 0.378858 | 4.2:+8997626 | MS.gene57397:CDS |
| AATCTTTGCTGAACTCAAAC+TGG | 0.398221 | 4.2:+8996216 | MS.gene57397:CDS |
| GTAAGAGGAATGGTGATTAG+AGG | 0.400662 | 4.2:-8997285 | None:intergenic |
| AGCACTGGAGTCCACTAGTT+TGG | 0.419150 | 4.2:-8997307 | None:intergenic |
| CTGATTTCCACTCTGACACT+TGG | 0.432656 | 4.2:+8996335 | MS.gene57397:CDS |
| AACACTTGCCTGCGATGTGC+TGG | 0.441349 | 4.2:-8998609 | None:intergenic |
| CTTCAGATCTTCTGACTTGA+GGG | 0.442503 | 4.2:-8996557 | None:intergenic |
| AGTTTGAGTTCAGCAAAGAT+TGG | 0.458340 | 4.2:-8996214 | None:intergenic |
| ATTACAAGGTGAGAAGAATC+AGG | 0.479535 | 4.2:-8996304 | None:intergenic |
| TGACACAGCTTCGCTAGCAC+TGG | 0.497449 | 4.2:-8997322 | None:intergenic |
| GCTTCAGATCTTCTGACTTG+AGG | 0.505851 | 4.2:-8996558 | None:intergenic |
| TTGCCGTCGATCCAGTGGTA+TGG | 0.520289 | 4.2:-8998063 | None:intergenic |
| AATGGAGCACAAAACTCTCC+AGG | 0.542423 | 4.2:+8998131 | MS.gene57397:CDS |
| CACTAGTTTGGTAAGAGGAA+TGG | 0.543772 | 4.2:-8997295 | None:intergenic |
| GAGTCCACTAGTTTGGTAAG+AGG | 0.544770 | 4.2:-8997300 | None:intergenic |
| GGATGAGATTGACAAGTATG+AGG | 0.550352 | 4.2:-8996250 | None:intergenic |
| GTGTGATGCCAGCACATCGC+AGG | 0.551841 | 4.2:+8998601 | MS.gene57397:CDS |
| GAATGCCTTAAAGAGGCTCA+AGG | 0.553484 | 4.2:-8997352 | None:intergenic |
| TCTTTCAGTTTCCTCGCTAG+AGG | 0.554281 | 4.2:+8996366 | MS.gene57397:CDS |
| AAGAAATGAAACCATACCAC+TGG | 0.556671 | 4.2:+8998052 | MS.gene57397:CDS |
| GATGGATATTATTGGAATAG+GGG | 0.562368 | 4.2:+8996498 | MS.gene57397:intron |
| GAGCCAAATTCTAACTCTGA+TGG | 0.564766 | 4.2:+8996589 | MS.gene57397:CDS |
| AAACCATACCACTGGATCGA+CGG | 0.565553 | 4.2:+8998060 | MS.gene57397:CDS |
| AAGAATCAGGAGCATGAACA+TGG | 0.572346 | 4.2:-8996291 | None:intergenic |
| ATTAGTGACTCAGAGAAAGC+AGG | 0.579976 | 4.2:+8998098 | MS.gene57397:CDS |
| TTGCTGAACTCAAACTGGAG+TGG | 0.589485 | 4.2:+8996221 | MS.gene57397:CDS |
| TGATTTCCACTCTGACACTT+GGG | 0.594053 | 4.2:+8996336 | MS.gene57397:CDS |
| ATGGATATTATTGGAATAGG+GGG | 0.596195 | 4.2:+8996499 | MS.gene57397:CDS |
| AAACATTATGGCATCTGAGA+AGG | 0.602177 | 4.2:+8997638 | MS.gene57397:CDS |
| CATTCCTCTTACCAAACTAG+TGG | 0.604126 | 4.2:+8997296 | MS.gene57397:CDS |
| AATCAGTGACATGAATTACA+AGG | 0.617084 | 4.2:-8996318 | None:intergenic |
| TGAGATTGACAAGTATGAGG+TGG | 0.625191 | 4.2:-8996247 | None:intergenic |
| GAGCTTCCCAAGTGTCAGAG+TGG | 0.653492 | 4.2:-8996342 | None:intergenic |
| ACTCACGATGTCCTCTAGCG+AGG | 0.698309 | 4.2:-8996377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAATATATAACTTCAAT+TGG | + | chr4.2:8997532-8997551 | MS.gene57397:intron | 15.0% |
| !! | ATATTCCAGTATATTTAAAA+TGG | - | chr4.2:8998429-8998448 | None:intergenic | 15.0% |
| !! | TAATTTATAAACATCTTATG+TGG | + | chr4.2:8997122-8997141 | MS.gene57397:intron | 15.0% |
| !! | TTTATGTGTTATATTATATG+AGG | + | chr4.2:8998212-8998231 | MS.gene57397:intron | 15.0% |
| !! | AAGAATGACAGAAAATTATA+GGG | + | chr4.2:8997802-8997821 | MS.gene57397:intron | 20.0% |
| !! | AAGATTGATACAATATAAGA+AGG | - | chr4.2:8997416-8997435 | None:intergenic | 20.0% |
| !! | ATAGTTGCAAATAAAGAAAA+CGG | - | chr4.2:8998307-8998326 | None:intergenic | 20.0% |
| !! | ATATGATAAGCACTTAATTA+AGG | - | chr4.2:8996822-8996841 | None:intergenic | 20.0% |
| !! | TAAGAATGACAGAAAATTAT+AGG | + | chr4.2:8997801-8997820 | MS.gene57397:intron | 20.0% |
| !! | TATAAGAAGATATAGAAAGT+GGG | - | chr4.2:8997104-8997123 | None:intergenic | 20.0% |
| !! | TTAATTGCTCAAAAATCAAA+AGG | + | chr4.2:8997258-8997277 | MS.gene57397:CDS | 20.0% |
| !! | TTATAAGAAGATATAGAAAG+TGG | - | chr4.2:8997105-8997124 | None:intergenic | 20.0% |
| !!! | ATTTGTAAGGCTTTAAAAAT+AGG | - | chr4.2:8997858-8997877 | None:intergenic | 20.0% |
| !!! | CAATAGAATAAGTTGAAATT+TGG | + | chr4.2:8996666-8996685 | MS.gene57397:intron | 20.0% |
| !!! | TTATTCCTTATTCTTTTCAT+AGG | + | chr4.2:8997892-8997911 | MS.gene57397:intron | 20.0% |
| ! | AAAGATGTTACAGTTAATTC+CGG | - | chr4.2:8997574-8997593 | None:intergenic | 25.0% |
| ! | AATCAATTAACTTTCTTCTG+TGG | + | chr4.2:8996622-8996641 | MS.gene57397:intron | 25.0% |
| ! | AGATGGATATTATTGGAATA+GGG | + | chr4.2:8996497-8996516 | MS.gene57397:intron | 25.0% |
| ! | ATTCAAGAGTAACATGAAAA+TGG | - | chr4.2:8998531-8998550 | None:intergenic | 25.0% |
| ! | GTGTTATGTGTTCTAATATT+TGG | + | chr4.2:8998155-8998174 | MS.gene57397:intron | 25.0% |
| ! | TAACTTCAATTGGATTTGTA+TGG | + | chr4.2:8997542-8997561 | MS.gene57397:intron | 25.0% |
| ! | TACCAAAAAATTATGATCTG+AGG | - | chr4.2:8997730-8997749 | None:intergenic | 25.0% |
| ! | TATTTCTCCATTTAGGAAAA+TGG | + | chr4.2:8998324-8998343 | MS.gene57397:intron | 25.0% |
| ! | TGGAATATGAAGAATAACAT+TGG | + | chr4.2:8998441-8998460 | MS.gene57397:intron | 25.0% |
| ! | TTAAATAAGTCGATACAAAC+AGG | + | chr4.2:8997043-8997062 | MS.gene57397:intron | 25.0% |
| !! | AATCTTTTGAATCTTTCGTA+AGG | + | chr4.2:8997430-8997449 | MS.gene57397:intron | 25.0% |
| !! | ATTAGCCTATGAAAAGAATA+AGG | - | chr4.2:8997900-8997919 | None:intergenic | 25.0% |
| !! | TTTGCTTTGTTACTTATTTC+AGG | + | chr4.2:8997219-8997238 | MS.gene57397:intron | 25.0% |
| !!! | ATTTGGTCTATTTTTCATCT+GGG | + | chr4.2:8998354-8998373 | MS.gene57397:intron | 25.0% |
| !!! | CAGATCATAATTTTTTGGTA+GGG | + | chr4.2:8997730-8997749 | MS.gene57397:intron | 25.0% |
| !!! | TCAGATCATAATTTTTTGGT+AGG | + | chr4.2:8997729-8997748 | MS.gene57397:intron | 25.0% |
| !!! | TTCCTCAGATCATAATTTTT+TGG | + | chr4.2:8997725-8997744 | MS.gene57397:intron | 25.0% |
| AAGAAAACAATAACCTGAAG+AGG | + | chr4.2:8998377-8998396 | MS.gene57397:intron | 30.0% | |
| AATCAGTGACATGAATTACA+AGG | - | chr4.2:8996321-8996340 | None:intergenic | 30.0% | |
| ATATTAGTTGCACACATCTT+TGG | - | chr4.2:8997521-8997540 | None:intergenic | 30.0% | |
| ATCAAATGTTCTCTTGTAGA+TGG | + | chr4.2:8997381-8997400 | MS.gene57397:CDS | 30.0% | |
| ATGGATATTATTGGAATAGG+GGG | + | chr4.2:8996499-8996518 | MS.gene57397:CDS | 30.0% | |
| CAGATGGATATTATTGGAAT+AGG | + | chr4.2:8996496-8996515 | MS.gene57397:intron | 30.0% | |
| CATAATAGAGCAACTTTACA+AGG | - | chr4.2:8996436-8996455 | None:intergenic | 30.0% | |
| CTATTCCAATAATATCCATC+TGG | - | chr4.2:8996498-8996517 | None:intergenic | 30.0% | |
| GATGGATATTATTGGAATAG+GGG | + | chr4.2:8996498-8996517 | MS.gene57397:intron | 30.0% | |
| TCTTTCAAAAGTTGTTAGCA+GGG | + | chr4.2:8998178-8998197 | MS.gene57397:intron | 30.0% | |
| TTACCATCAGAGTTAGAATT+TGG | - | chr4.2:8996595-8996614 | None:intergenic | 30.0% | |
| TTCTTCTGTGGAGTTTAAAT+AGG | + | chr4.2:8996634-8996653 | MS.gene57397:intron | 30.0% | |
| TTGATGCATGCAATCAATAA+TGG | + | chr4.2:8997151-8997170 | MS.gene57397:intron | 30.0% | |
| TTGCAGATAAGCAAAAATCT+CGG | + | chr4.2:8998550-8998569 | MS.gene57397:intron | 30.0% | |
| ! | AAAGCAGGTGTTTCTAATAA+TGG | + | chr4.2:8998113-8998132 | MS.gene57397:CDS | 30.0% |
| ! | AATTTTTCACTTTCCTCTTC+AGG | - | chr4.2:8998393-8998412 | None:intergenic | 30.0% |
| ! | CTGAATAATTTTCAACTCTG+TGG | + | chr4.2:8997954-8997973 | MS.gene57397:intron | 30.0% |
| ! | TCTTTTCATAGGCTAATCAT+GGG | + | chr4.2:8997903-8997922 | MS.gene57397:intron | 30.0% |
| ! | TGCAAACAGCATAATTTGTA+AGG | - | chr4.2:8997871-8997890 | None:intergenic | 30.0% |
| ! | TGGCACCATTTTAAATATAC+TGG | + | chr4.2:8998421-8998440 | MS.gene57397:intron | 30.0% |
| ! | TTCTTTTCATAGGCTAATCA+TGG | + | chr4.2:8997902-8997921 | MS.gene57397:intron | 30.0% |
| ! | TTGCAACTATTTCTCCATTT+AGG | + | chr4.2:8998317-8998336 | MS.gene57397:intron | 30.0% |
| ! | TTTTCTTACTGCTGTAAAGT+AGG | - | chr4.2:8997780-8997799 | None:intergenic | 30.0% |
| !! | ATTTTGAGAGTCACTTAAAG+AGG | - | chr4.2:8997998-8998017 | None:intergenic | 30.0% |
| !! | CATTTGGTCTATTTTTCATC+TGG | + | chr4.2:8998353-8998372 | MS.gene57397:intron | 30.0% |
| !!! | TAGTTTTGAATGCCTTAAAG+AGG | - | chr4.2:8997362-8997381 | None:intergenic | 30.0% |
| AAACATTATGGCATCTGAGA+AGG | + | chr4.2:8997638-8997657 | MS.gene57397:CDS | 35.0% | |
| AAAGTTGTTAGCAGGGTTTA+AGG | + | chr4.2:8998185-8998204 | MS.gene57397:intron | 35.0% | |
| AAGAAATGAAACCATACCAC+TGG | + | chr4.2:8998052-8998071 | MS.gene57397:CDS | 35.0% | |
| AAGTGAAAAATTGCCTCTTC+TGG | + | chr4.2:8998401-8998420 | MS.gene57397:intron | 35.0% | |
| AATCTTTGCTGAACTCAAAC+TGG | + | chr4.2:8996216-8996235 | MS.gene57397:CDS | 35.0% | |
| AGGTTTCGATGACAGTAATT+TGG | + | chr4.2:8996778-8996797 | MS.gene57397:intron | 35.0% | |
| ATTACAAGGTGAGAAGAATC+AGG | - | chr4.2:8996307-8996326 | None:intergenic | 35.0% | |
| ATTAGAACACATAACACACC+TGG | - | chr4.2:8998152-8998171 | None:intergenic | 35.0% | |
| ATTGATTGCATGCATCAAAG+AGG | - | chr4.2:8997149-8997168 | None:intergenic | 35.0% | |
| CACAATTGTTCAACTCGATT+TGG | - | chr4.2:8997672-8997691 | None:intergenic | 35.0% | |
| GCATGAACATGGAACAAAAA+AGG | - | chr4.2:8996283-8996302 | None:intergenic | 35.0% | |
| GGTCATCATTCTGTTAGTAT+GGG | + | chr4.2:8997823-8997842 | MS.gene57397:intron | 35.0% | |
| GGTTTCATTTCTTTCCTGAT+AGG | - | chr4.2:8998045-8998064 | None:intergenic | 35.0% | |
| GGTTTCGATGACAGTAATTT+GGG | + | chr4.2:8996779-8996798 | MS.gene57397:intron | 35.0% | |
| GTAAGGTCTTGATTTCTGTT+TGG | + | chr4.2:8997447-8997466 | MS.gene57397:intron | 35.0% | |
| GTCTTTCAAAAGTTGTTAGC+AGG | + | chr4.2:8998177-8998196 | MS.gene57397:intron | 35.0% | |
| TGCAGATAAGCAAAAATCTC+GGG | + | chr4.2:8998551-8998570 | MS.gene57397:intron | 35.0% | |
| TGTGCAGTTGACAAACATTA+TGG | + | chr4.2:8997626-8997645 | MS.gene57397:CDS | 35.0% | |
| TTTATCCTTGAGCCTCTTTA+AGG | + | chr4.2:8997347-8997366 | MS.gene57397:CDS | 35.0% | |
| ! | AAGCTTTTCTACAGAGCTTA+TGG | + | chr4.2:8996927-8996946 | MS.gene57397:intron | 35.0% |
| ! | ACACTCTTTTTCTACCTATC+AGG | + | chr4.2:8998028-8998047 | MS.gene57397:intron | 35.0% |
| ! | AGTTTGAGTTCAGCAAAGAT+TGG | - | chr4.2:8996217-8996236 | None:intergenic | 35.0% |
| ! | ATTTAAAATGGTGCCAGAAG+AGG | - | chr4.2:8998417-8998436 | None:intergenic | 35.0% |
| ! | CACACGATTCTTAACTTTTG+TGG | - | chr4.2:8998586-8998605 | None:intergenic | 35.0% |
| !! | ATTTGGTGTATATCCTCTTG+TGG | + | chr4.2:8996683-8996702 | MS.gene57397:intron | 35.0% |
| !! | TGTAGTGTTGTTTGTTGTAC+AGG | + | chr4.2:8998479-8998498 | MS.gene57397:intron | 35.0% |
| !!! | ATTTTTTGGTAGGGATTCCT+TGG | + | chr4.2:8997739-8997758 | MS.gene57397:intron | 35.0% |
| AAGCAAAAATCTCGGGATAC+AGG | + | chr4.2:8998558-8998577 | MS.gene57397:CDS | 40.0% | |
| AGGAAAATGGTGACTGCATT+TGG | + | chr4.2:8998337-8998356 | MS.gene57397:intron | 40.0% | |
| AGTCGATACAAACAGGTCAT+TGG | + | chr4.2:8997050-8997069 | MS.gene57397:intron | 40.0% | |
| ATATCCTCTTGTGGAATGCA+TGG | + | chr4.2:8996692-8996711 | MS.gene57397:intron | 40.0% | |
| ATGGCATACTGTTTGTCTTG+AGG | + | chr4.2:8997170-8997189 | MS.gene57397:intron | 40.0% | |
| ATTAGTGACTCAGAGAAAGC+AGG | + | chr4.2:8998098-8998117 | MS.gene57397:CDS | 40.0% | |
| CATTCCTCTTACCAAACTAG+TGG | + | chr4.2:8997296-8997315 | MS.gene57397:CDS | 40.0% | |
| GAGCCAAATTCTAACTCTGA+TGG | + | chr4.2:8996589-8996608 | MS.gene57397:CDS | 40.0% | |
| GAGTTGAACAATTGTGCTTG+GGG | + | chr4.2:8997676-8997695 | MS.gene57397:intron | 40.0% | |
| GGAATGCCAAATCAATTCCA+AGG | - | chr4.2:8997759-8997778 | None:intergenic | 40.0% | |
| GGATGAGATTGACAAGTATG+AGG | - | chr4.2:8996253-8996272 | None:intergenic | 40.0% | |
| GGGATTCCTTGGAATTGATT+TGG | + | chr4.2:8997750-8997769 | MS.gene57397:intron | 40.0% | |
| GGGTCATCATTCTGTTAGTA+TGG | + | chr4.2:8997822-8997841 | MS.gene57397:intron | 40.0% | |
| GTAAGAGGAATGGTGATTAG+AGG | - | chr4.2:8997288-8997307 | None:intergenic | 40.0% | |
| TCGCTCCAGATGGATATTAT+TGG | + | chr4.2:8996490-8996509 | MS.gene57397:intron | 40.0% | |
| TGAGATTGACAAGTATGAGG+TGG | - | chr4.2:8996250-8996269 | None:intergenic | 40.0% | |
| TGATTTCCACTCTGACACTT+GGG | + | chr4.2:8996336-8996355 | MS.gene57397:CDS | 40.0% | |
| TGTCTATGACACTTCCATCT+TGG | + | chr4.2:8996740-8996759 | MS.gene57397:intron | 40.0% | |
| TTATTTACCTTCGCTCCAGA+TGG | + | chr4.2:8996480-8996499 | MS.gene57397:intron | 40.0% | |
| TTCCATCTTGGTCACTCTTA+TGG | + | chr4.2:8996752-8996771 | MS.gene57397:intron | 40.0% | |
| ! | AAGAATCAGGAGCATGAACA+TGG | - | chr4.2:8996294-8996313 | None:intergenic | 40.0% |
| ! | ATAATATCCATCTGGAGCGA+AGG | - | chr4.2:8996490-8996509 | None:intergenic | 40.0% |
| ! | CACTAGTTTGGTAAGAGGAA+TGG | - | chr4.2:8997298-8997317 | None:intergenic | 40.0% |
| ! | CGAGTTGAACAATTGTGCTT+GGG | + | chr4.2:8997675-8997694 | MS.gene57397:intron | 40.0% |
| ! | CTTCAGATCTTCTGACTTGA+GGG | - | chr4.2:8996560-8996579 | None:intergenic | 40.0% |
| ! | GCAGTCACCATTTTCCTAAA+TGG | - | chr4.2:8998334-8998353 | None:intergenic | 40.0% |
| !! | TCGAGTTGAACAATTGTGCT+TGG | + | chr4.2:8997674-8997693 | MS.gene57397:intron | 40.0% |
| AAACCATACCACTGGATCGA+CGG | + | chr4.2:8998060-8998079 | MS.gene57397:CDS | 45.0% | |
| AATGGAGCACAAAACTCTCC+AGG | + | chr4.2:8998131-8998150 | MS.gene57397:CDS | 45.0% | |
| ATCTCCATGCATTCCACAAG+AGG | - | chr4.2:8996699-8996718 | None:intergenic | 45.0% | |
| CTCCATAAGAGTGACCAAGA+TGG | - | chr4.2:8996757-8996776 | None:intergenic | 45.0% | |
| CTGATTTCCACTCTGACACT+TGG | + | chr4.2:8996335-8996354 | MS.gene57397:CDS | 45.0% | |
| CTTGGTCACTCTTATGGAGA+AGG | + | chr4.2:8996758-8996777 | MS.gene57397:intron | 45.0% | |
| GAATGCCTTAAAGAGGCTCA+AGG | - | chr4.2:8997355-8997374 | None:intergenic | 45.0% | |
| TCTTTCAGTTTCCTCGCTAG+AGG | + | chr4.2:8996366-8996385 | MS.gene57397:CDS | 45.0% | |
| TGGAACAAAAAAGGACGCGA+AGG | - | chr4.2:8996274-8996293 | None:intergenic | 45.0% | |
| TGGATTTGTATGGTCTGTGC+CGG | + | chr4.2:8997552-8997571 | MS.gene57397:intron | 45.0% | |
| TTATTGGAATAGGGGGCTCT+TGG | + | chr4.2:8996506-8996525 | MS.gene57397:CDS | 45.0% | |
| TTGCTGAACTCAAACTGGAG+TGG | + | chr4.2:8996221-8996240 | MS.gene57397:CDS | 45.0% | |
| ! | GAGTCCACTAGTTTGGTAAG+AGG | - | chr4.2:8997303-8997322 | None:intergenic | 45.0% |
| ! | GCTTCAGATCTTCTGACTTG+AGG | - | chr4.2:8996561-8996580 | None:intergenic | 45.0% |
| ! | AACTTTTGCCGTCGATCCAG+TGG | - | chr4.2:8998071-8998090 | None:intergenic | 50.0% |
| ! | AGCACTGGAGTCCACTAGTT+TGG | - | chr4.2:8997310-8997329 | None:intergenic | 50.0% |
| AACACTTGCCTGCGATGTGC+TGG | - | chr4.2:8998612-8998631 | None:intergenic | 55.0% | |
| ACTCACGATGTCCTCTAGCG+AGG | - | chr4.2:8996380-8996399 | None:intergenic | 55.0% | |
| GAGCTTCCCAAGTGTCAGAG+TGG | - | chr4.2:8996345-8996364 | None:intergenic | 55.0% | |
| TGACACAGCTTCGCTAGCAC+TGG | - | chr4.2:8997325-8997344 | None:intergenic | 55.0% | |
| TTGCCGTCGATCCAGTGGTA+TGG | - | chr4.2:8998066-8998085 | None:intergenic | 55.0% | |
| ! | ACAGAGCGTTCTTGCACTGG+TGG | - | chr4.2:8997609-8997628 | None:intergenic | 55.0% |
| ! | TGCACAGAGCGTTCTTGCAC+TGG | - | chr4.2:8997612-8997631 | None:intergenic | 55.0% |
| GTGTGATGCCAGCACATCGC+AGG | + | chr4.2:8998601-8998620 | MS.gene57397:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 8996193 | 8998653 | 8996193 | ID=MS.gene57397 |
| chr4.2 | mRNA | 8996193 | 8998653 | 8996193 | ID=MS.gene57397.t1;Parent=MS.gene57397 |
| chr4.2 | exon | 8996193 | 8996393 | 8996193 | ID=MS.gene57397.t1.exon1;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8996193 | 8996393 | 8996193 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| chr4.2 | exon | 8996499 | 8996610 | 8996499 | ID=MS.gene57397.t1.exon2;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8996499 | 8996610 | 8996499 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| chr4.2 | exon | 8997241 | 8997402 | 8997241 | ID=MS.gene57397.t1.exon3;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8997241 | 8997402 | 8997241 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| chr4.2 | exon | 8997613 | 8997659 | 8997613 | ID=MS.gene57397.t1.exon4;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8997613 | 8997659 | 8997613 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| chr4.2 | exon | 8998050 | 8998152 | 8998050 | ID=MS.gene57397.t1.exon5;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8998050 | 8998152 | 8998050 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| chr4.2 | exon | 8998556 | 8998653 | 8998556 | ID=MS.gene57397.t1.exon6;Parent=MS.gene57397.t1 |
| chr4.2 | CDS | 8998556 | 8998653 | 8998556 | ID=cds.MS.gene57397.t1;Parent=MS.gene57397.t1 |
| Gene Sequence |
| Protein sequence |
