AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052253


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052253.t1 MTR_3g031360 97.087 309 8 1 1 308 1 309 0.0 620
MS.gene052253.t1 MTR_1g022030 35.789 285 163 6 30 308 235 505 2.07e-45 161
MS.gene052253.t1 MTR_5g019790 38.672 256 135 7 61 308 206 447 1.45e-44 157
MS.gene052253.t1 MTR_2g008590 32.836 268 146 9 51 305 1007 1253 1.04e-26 110
MS.gene052253.t1 MTR_2g095720 91.892 37 3 0 173 209 4 40 2.98e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052253.t1 AT2G30170 64.014 289 99 3 23 308 12 298 2.36e-131 375
MS.gene052253.t1 AT2G30170 67.873 221 70 1 89 308 1 221 1.40e-110 320
MS.gene052253.t1 AT2G30170 63.319 229 79 3 23 248 12 238 1.57e-96 286
MS.gene052253.t1 AT2G30170 69.744 195 58 1 55 248 9 203 8.59e-96 283
MS.gene052253.t1 AT2G30170 63.684 190 65 2 23 210 12 199 1.13e-79 241
MS.gene052253.t1 AT2G30170 67.089 158 51 1 152 308 1 158 5.73e-77 232
MS.gene052253.t1 AT2G30170 68.323 161 50 1 89 248 1 161 8.41e-76 230
MS.gene052253.t1 AT4G16580 40.945 254 131 5 61 308 221 461 8.66e-52 177
MS.gene052253.t1 AT5G66720 33.013 312 176 6 4 308 126 411 3.58e-49 169
MS.gene052253.t1 AT5G66720 33.758 314 174 7 4 308 126 414 1.66e-48 167
MS.gene052253.t1 AT4G33500 34.000 250 142 9 61 303 484 717 1.01e-31 125

Find 0 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATACACAAATTTATATATA+AGG + 20888:64625-64644 MS.gene052253:intergenic 15.0%
!!! ATAATTACTATTACCTTTTT+TGG + 20888:63171-63190 MS.gene052253:intergenic 15.0%
!!! CTATTTTATCAAATTATTAC+CGG + 20888:65016-65035 MS.gene052253:intergenic 15.0%
!!! TAATGCTTAATACTTTTTTT+AGG - 20888:63063-63082 MS.gene052253:intron 15.0%
!!! TTTTCAGTTATAAATTTAGA+TGG - 20888:63638-63657 MS.gene052253:CDS 15.0%
!! GAAAATAATAACAAAGAAAC+TGG + 20888:65177-65196 MS.gene052253:intergenic 20.0%
!! GTAATATCTCATGTTATAAA+AGG - 20888:64312-64331 MS.gene052253:intron 20.0%
!! TTAAATTGTTTATCCAAACA+AGG - 20888:63560-63579 MS.gene052253:CDS 20.0%
!!! AAGTTTATCCTCTTTTATTT+AGG - 20888:64104-64123 MS.gene052253:intron 20.0%
!!! TATTTTATGATTGTCAGTTT+TGG - 20888:65774-65793 MS.gene052253:CDS 20.0%
!!! TTACTTTTTCTATTGTTAAC+AGG - 20888:66135-66154 MS.gene052253:CDS 20.0%
!!! TTATAATTTTGTACAAGATG+AGG - 20888:63792-63811 MS.gene052253:intron 20.0%
!!! TTTTATTTAGGTTGCTAATT+TGG - 20888:64116-64135 MS.gene052253:intron 20.0%
! AAATAGTCAATGATGAGAAA+AGG - 20888:64647-64666 MS.gene052253:intron 25.0%
! AACAGAAATACAAGAGTTTA+GGG + 20888:65226-65245 MS.gene052253:intergenic 25.0%
! AACAGAAATACATTTGTATC+AGG + 20888:65360-65379 MS.gene052253:intergenic 25.0%
! AACATGAGATATTACCATTA+CGG + 20888:64307-64326 MS.gene052253:intergenic 25.0%
! AATAGCTTAGTTTCTTGATT+TGG - 20888:65248-65267 MS.gene052253:intron 25.0%
! AATAGTCAATGATGAGAAAA+GGG - 20888:64648-64667 MS.gene052253:intron 25.0%
! AGTTTACTAACCTAATTACA+GGG + 20888:63022-63041 MS.gene052253:intergenic 25.0%
! ATAGCTTAGTTTCTTGATTT+GGG - 20888:65249-65268 MS.gene052253:intron 25.0%
! ATATAAAAACTTACACCTTC+TGG + 20888:63497-63516 MS.gene052253:intergenic 25.0%
! ATTAGCAACCTAAATAAAAG+AGG + 20888:64115-64134 MS.gene052253:intergenic 25.0%
! CAACTAATAAATGATGTATC+TGG + 20888:63440-63459 MS.gene052253:intergenic 25.0%
! CAATATGATAACACATAACT+TGG + 20888:65281-65300 MS.gene052253:intergenic 25.0%
! CACAAATTTATATATAAGGC+AGG + 20888:64621-64640 MS.gene052253:intergenic 25.0%
! CTAATGTACAACAATAACTA+TGG + 20888:65199-65218 MS.gene052253:intergenic 25.0%
! CTATTGATGAAAATGCTAAA+AGG - 20888:62955-62974 MS.gene052253:intron 25.0%
! CTTACTCACTAATTCATTAT+TGG - 20888:63355-63374 MS.gene052253:intron 25.0%
! GATGAGGAAAAAAACATATA+GGG + 20888:64349-64368 MS.gene052253:intergenic 25.0%
! GATGATATTACTGTAATTGT+TGG - 20888:66168-66187 MS.gene052253:CDS 25.0%
! TAACAGAAATACAAGAGTTT+AGG + 20888:65227-65246 MS.gene052253:intergenic 25.0%
! TGGAAAATGACTTCTTAATA+GGG - 20888:65794-65813 MS.gene052253:CDS 25.0%
! TTCAAAAGAATGAATGTAAC+TGG + 20888:63883-63902 MS.gene052253:intergenic 25.0%
! TTCAATATTAAGAGCTGTAA+TGG - 20888:62884-62903 MS.gene052253:CDS 25.0%
! TTGGAAAATGACTTCTTAAT+AGG - 20888:65793-65812 MS.gene052253:CDS 25.0%
! TTTAGGTCTATGTTAGAATT+GGG - 20888:63080-63099 MS.gene052253:intron 25.0%
!! ACAAACTTATTTCTTTACCT+TGG + 20888:65703-65722 MS.gene052253:intergenic 25.0%
!! ATTAGTTGTGGTGATTTTAA+TGG + 20888:64869-64888 MS.gene052253:intergenic 25.0%
!! CGATTTTGCATAGAATTTTT+AGG - 20888:65111-65130 MS.gene052253:intron 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG - 20888:65936-65955 MS.gene052253:CDS 25.0%
!!! TTTTAGGTCTATGTTAGAAT+TGG - 20888:63079-63098 MS.gene052253:intron 25.0%
AAAAGATTACTTGACCTGAA+AGG + 20888:64415-64434 MS.gene052252:intergenic 30.0%
AAACAGATCAACAAAGAAGA+AGG + 20888:65545-65564 MS.gene052252:intergenic 30.0%
AAATGAGATTATATCCCCTT+TGG + 20888:65333-65352 MS.gene052252:intergenic 30.0%
AAATTGTTGAGGCTATATTG+TGG + 20888:64191-64210 MS.gene052252:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG + 20888:64788-64807 MS.gene052252:intergenic 30.0%
AATCTAAAGATTGCCAATGT+TGG - 20888:64260-64279 MS.gene052253:intron 30.0%
AATGAGATTATATCCCCTTT+GGG + 20888:65332-65351 MS.gene052253:intergenic 30.0%
ACAAATAGAGGATTAGGAAA+AGG + 20888:64567-64586 MS.gene052253:intergenic 30.0%
ACAGAAATACAAGAGTTTAG+GGG + 20888:65225-65244 MS.gene052253:intergenic 30.0%
AGAAAAACAGGTAAGTAATG+TGG - 20888:65404-65423 MS.gene052253:intron 30.0%
ATAATCAGTATCTGCGTTTA+GGG + 20888:63828-63847 MS.gene052253:intergenic 30.0%
ATGATCCTCAGATTCTTATA+AGG - 20888:64038-64057 MS.gene052253:intron 30.0%
ATGGTTATATGCATGTTGTT+TGG - 20888:63958-63977 MS.gene052253:intron 30.0%
CGATGAGGAAAAAAACATAT+AGG + 20888:64350-64369 MS.gene052253:intergenic 30.0%
GAAGATATGTTATGAATGTG+TGG + 20888:62936-62955 MS.gene052253:intergenic 30.0%
GAGCTGTAATTCAATAAGAA+TGG - 20888:63939-63958 MS.gene052253:intron 30.0%
GAGTTTACTAACCTAATTAC+AGG + 20888:63023-63042 MS.gene052253:intergenic 30.0%
TAAATGTTACCATTGCATCA+AGG + 20888:64508-64527 MS.gene052253:intergenic 30.0%
TATTACTGTAATTGTTGGTC+AGG - 20888:66173-66192 MS.gene052253:CDS 30.0%
TGTTGAGAACTTGAATTTCT+CGG - 20888:64383-64402 MS.gene052253:intron 30.0%
TTCTTTGTGAGCAACTATAA+TGG - 20888:63291-63310 MS.gene052253:intron 30.0%
TTGATGAAAATGCTAAAAGG+AGG - 20888:62958-62977 MS.gene052253:intron 30.0%
TTTACTTTATAGGTCATCAG+AGG - 20888:63110-63129 MS.gene052253:intron 30.0%
! AATGATAGTAATGCCTTGTT+TGG + 20888:63576-63595 MS.gene052253:intergenic 30.0%
! AGAAACATCTTTGTTTGCAA+CGG + 20888:65508-65527 MS.gene052253:intergenic 30.0%
! CTTAAGGAAATGATTAGTTG+TGG + 20888:64881-64900 MS.gene052253:intergenic 30.0%
! CTTTTTCTATTGTTAACAGG+TGG - 20888:66138-66157 MS.gene052253:CDS 30.0%
! GCATTGTCAACAATTTTACA+GGG - 20888:66009-66028 MS.gene052253:intron 30.0%
! TAATTTTGTACAAGATGAGG+AGG - 20888:63795-63814 MS.gene052253:intron 30.0%
! TCTATGTTAGAATTGGGTTT+TGG - 20888:63086-63105 MS.gene052253:intron 30.0%
! TGCATTGTCAACAATTTTAC+AGG - 20888:66008-66027 MS.gene052253:intron 30.0%
! TTAACCCAAAGCCAATATTT+TGG + 20888:65149-65168 MS.gene052253:intergenic 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG - 20888:65148-65167 MS.gene052253:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG - 20888:65149-65168 MS.gene052253:intron 30.0%
!! AACAAAGCAAGATTTTAGTC+AGG + 20888:63619-63638 MS.gene052253:intergenic 30.0%
!! ACAAAGCAAGATTTTAGTCA+GGG + 20888:63618-63637 MS.gene052253:intergenic 30.0%
!! CATGTTGATTCGTTGAATAT+TGG - 20888:63996-64015 MS.gene052253:intron 30.0%
!! TGAATATTGGTTGATTTTGC+AGG - 20888:64009-64028 MS.gene052253:intron 30.0%
!! TTTTGATTCTCCGTATTCAT+TGG - 20888:65668-65687 MS.gene052253:intron 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG + 20888:63165-63184 MS.gene052253:intergenic 30.0%
!!! CGACTCTTTTAAAACTTAGA+AGG + 20888:65826-65845 MS.gene052253:intergenic 30.0%
!!! GGGTTTTGGTTTTACTTTAT+AGG - 20888:63100-63119 MS.gene052253:intron 30.0%
AATTCACGTGGGAATAATGA+AGG + 20888:63760-63779 MS.gene052253:intergenic 35.0%
ACTAACCTTGACAGAAAAAC+AGG - 20888:65392-65411 MS.gene052253:intron 35.0%
AGTGAAGTGAAGACAAATAG+AGG + 20888:64579-64598 MS.gene052253:intergenic 35.0%
ATTATTCCCACGTGAATTGA+TGG - 20888:63762-63781 MS.gene052253:intron 35.0%
ATTGCTATGCTGGAAAAGAA+TGG - 20888:64236-64255 MS.gene052253:intron 35.0%
CAATCTGAGCAAGAAAGTTT+AGG + 20888:64697-64716 MS.gene052253:intergenic 35.0%
CAGAAATACAAGAGTTTAGG+GGG + 20888:65224-65243 MS.gene052253:intergenic 35.0%
CAGAACTTAACCCTGTAATT+AGG - 20888:63009-63028 MS.gene052253:CDS 35.0%
CAGTCAAAGTAATGTTCTTG+TGG + 20888:64446-64465 MS.gene052253:intergenic 35.0%
CATAATCAGTATCTGCGTTT+AGG + 20888:63829-63848 MS.gene052253:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG - 20888:63155-63174 MS.gene052253:intron 35.0%
CTTCTTTGTTGATCTGTTTG+AGG - 20888:65546-65565 MS.gene052253:intron 35.0%
GCTTTCCTTATAAGAATCTG+AGG + 20888:64046-64065 MS.gene052253:intergenic 35.0%
GTGAAGACAAATAGAGGATT+AGG + 20888:64573-64592 MS.gene052253:intergenic 35.0%
TAATCCACAATCACCAACAT+TGG + 20888:64276-64295 MS.gene052253:intergenic 35.0%
TCACAGACAAGAAATTGTTG+AGG + 20888:64202-64221 MS.gene052253:intergenic 35.0%
TGCTTATAATAGTGACCAGA+AGG - 20888:63479-63498 MS.gene052253:intron 35.0%
TGTTTCTTGAAGGTTGAGAA+AGG - 20888:63255-63274 MS.gene052253:intron 35.0%
TTGCTATGCTGGAAAAGAAT+GGG - 20888:64237-64256 MS.gene052253:intron 35.0%
TTGTGTTATGCTTCACAGTT+GGG - 20888:63717-63736 MS.gene052253:intron 35.0%
TTGTTAGAGACTTAGAGTTG+TGG - 20888:63232-63251 MS.gene052253:intron 35.0%
TTTCAGATTGAAGTTGTGTC+TGG + 20888:65088-65107 MS.gene052253:intergenic 35.0%
TTTGTGAGCAACTATAATGG+TGG - 20888:63294-63313 MS.gene052253:intron 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG - 20888:63127-63146 MS.gene052253:intron 35.0%
! GAACGTGTTTCAACTTCTTT+TGG + 20888:65910-65929 MS.gene052253:intergenic 35.0%
! GTTCATTTTGTTGCTAGCAA+AGG - 20888:65605-65624 MS.gene052253:intron 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG - 20888:63126-63145 MS.gene052253:intron 35.0%
! TGCAAACAAAGATGTTTCTG+AGG - 20888:65509-65528 MS.gene052253:intron 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG - 20888:65150-65169 MS.gene052253:intron 35.0%
!! ACTTACCTGTTTTTCTGTCA+AGG + 20888:65400-65419 MS.gene052253:intergenic 35.0%
!! CATTCAAAGTGTTTTCGATG+AGG + 20888:64365-64384 MS.gene052253:intergenic 35.0%
!! TAGTTTCTTGATTTGGGTGA+AGG - 20888:65255-65274 MS.gene052253:intron 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG + 20888:63158-63177 MS.gene052253:intergenic 35.0%
!!! TACCTGTGTCATTTTCATGT+CGG - 20888:65053-65072 MS.gene052253:intron 35.0%
AATGCTACACTTGTCTGAGA+CGG - 20888:64917-64936 MS.gene052253:intron 40.0%
ACAATTGTCATGGGATCTGA+TGG - 20888:65444-65463 MS.gene052253:intron 40.0%
ACACAACACAACTTCCCAAA+GGG - 20888:65315-65334 MS.gene052253:CDS 40.0%
ACACTTATTATGAGACGGAG+GGG + 20888:64783-64802 MS.gene052253:intergenic 40.0%
AGAGTTGTGGTGTTTCTTGA+AGG - 20888:63245-63264 MS.gene052253:intron 40.0%
CAACGGTTAGAGCAATTTCA+TGG + 20888:65491-65510 MS.gene052253:intergenic 40.0%
CAATTGTCATGGGATCTGAT+GGG - 20888:65445-65464 MS.gene052253:intron 40.0%
CATTAGCCATCAATTCACGT+GGG + 20888:63771-63790 MS.gene052253:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG - 20888:64496-64515 MS.gene052253:intron 40.0%
CCATTGCATCAAGGTATGTT+TGG + 20888:64499-64518 MS.gene052253:intergenic 40.0%
CTCAGACAAGTGTAGCATTT+GGG + 20888:64916-64935 MS.gene052253:intergenic 40.0%
GAAGGAGACACAATTGTCAT+GGG - 20888:65435-65454 MS.gene052253:intron 40.0%
GACACTTATTATGAGACGGA+GGG + 20888:64784-64803 MS.gene052253:intergenic 40.0%
GGATTACGAGTTATCCGTAA+TGG - 20888:64290-64309 MS.gene052253:intron 40.0%
GGTAAGTAATGTGGAGTTGA+TGG - 20888:65413-65432 MS.gene052253:intron 40.0%
GTAATGTTCTTGTGGAGAAG+TGG + 20888:64438-64457 MS.gene052253:intergenic 40.0%
GTTGTGTTATGCTTCACAGT+TGG - 20888:63716-63735 MS.gene052253:intron 40.0%
TACACAACACAACTTCCCAA+AGG - 20888:65314-65333 MS.gene052253:CDS 40.0%
TCTCAGACAAGTGTAGCATT+TGG + 20888:64917-64936 MS.gene052253:intergenic 40.0%
TCTGAGCAAGAAAGTTTAGG+TGG + 20888:64694-64713 MS.gene052253:intergenic 40.0%
TCTTGAAGGTTGAGAAAGGT+GGG - 20888:63259-63278 MS.gene052253:intron 40.0%
TGACACTTATTATGAGACGG+AGG + 20888:64785-64804 MS.gene052253:intergenic 40.0%
TGATTCTCCGTATTCATTGG+AGG - 20888:65671-65690 MS.gene052253:intron 40.0%
TTATGTGTCAACGTCGTCTT+TGG + 20888:64990-65009 MS.gene052253:intergenic 40.0%
TTCTTGAAGGTTGAGAAAGG+TGG - 20888:63258-63277 MS.gene052253:intron 40.0%
! CATGGTGGAAGAAAGTTCTT+GGG - 20888:66043-66062 MS.gene052253:intron 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG - 20888:65513-65532 MS.gene052253:intron 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG - 20888:65620-65639 MS.gene052253:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG - 20888:65417-65436 MS.gene052253:intron 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG - 20888:64269-64288 MS.gene052253:intron 40.0%
!! CCAGCCAAAATATTGGCTTT+GGG - 20888:65142-65161 MS.gene052253:intron 40.0%
CACAACACAACTTCCCAAAG+GGG - 20888:65316-65335 MS.gene052253:CDS 45.0%
CACCGACATGAAAATGACAC+AGG + 20888:65058-65077 MS.gene052253:intergenic 45.0%
CACTTATTATGAGACGGAGG+GGG + 20888:64782-64801 MS.gene052253:intergenic 45.0%
CATGCTGCTACATTCTCTAC+AGG - 20888:64067-64086 MS.gene052253:intron 45.0%
CCAAGAACTTTCTTCCACCA+TGG + 20888:66045-66064 MS.gene052253:intergenic 45.0%
CGACGTTGACACATAAACAC+CGG - 20888:64994-65013 MS.gene052253:CDS 45.0%
CTTGAAGGTTGAGAAAGGTG+GGG - 20888:63260-63279 MS.gene052253:intron 45.0%
CTTGGCAAACAGTCATGCAA+TGG - 20888:65638-65657 MS.gene052253:intron 45.0%
GAGGAATTGCGATCAACTGT+AGG - 20888:65565-65584 MS.gene052253:intron 45.0%
GCATTAGCCATCAATTCACG+TGG + 20888:63772-63791 MS.gene052253:intergenic 45.0%
GGAAGGAGACACAATTGTCA+TGG - 20888:65434-65453 MS.gene052253:intron 45.0%
GTTCTTGGGATGAAGTTGAC+AGG - 20888:66057-66076 MS.gene052253:CDS 45.0%
TCACGTGCCAGCCAAAATAT+TGG - 20888:65135-65154 MS.gene052253:intron 45.0%
TCCGTATTCATTGGAGGCAA+GGG - 20888:65677-65696 MS.gene052253:intron 45.0%
TGGGATGAAGTTGACAGGTA+TGG - 20888:66062-66081 MS.gene052253:CDS 45.0%
TGGGTTGTGCACAGTTCTTA+AGG + 20888:64897-64916 MS.gene052253:intergenic 45.0%
! CAGTATCTGCGTTTAGGGTA+CGG + 20888:63823-63842 MS.gene052253:intergenic 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG - 20888:66042-66061 MS.gene052253:intron 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG - 20888:63315-63334 MS.gene052253:intron 45.0%
! GTGAAGCATCATTGCTATGC+TGG - 20888:64226-64245 MS.gene052253:intron 45.0%
! GTGTAGCATCGGATTATGCT+GGG + 20888:64752-64771 MS.gene052253:intergenic 45.0%
! TCTCAGAGCTCAGTTGGTAT+GGG + 20888:64469-64488 MS.gene052253:intergenic 45.0%
! TGTGTAGCATCGGATTATGC+TGG + 20888:64753-64772 MS.gene052253:intergenic 45.0%
!! AGATGTTTCTGAGGCTGGTA+TGG - 20888:65518-65537 MS.gene052253:intron 45.0%
!! ATACCAACTGAGCTCTGAGA+GGG - 20888:64469-64488 MS.gene052253:intron 45.0%
!! GCCAGCCAAAATATTGGCTT+TGG - 20888:65141-65160 MS.gene052253:intron 45.0%
!! GGGGTATTGTTGTGTAGCAT+CGG + 20888:64763-64782 MS.gene052253:intergenic 45.0%
!! TTTCTCGGTGTTCTCCTTTC+AGG - 20888:64398-64417 MS.gene052253:intron 45.0%
!!! CCCAAAGCCAATATTTTGGC+TGG + 20888:65145-65164 MS.gene052253:intergenic 45.0%
!!! CTGTGTCATTTTCATGTCGG+TGG - 20888:65056-65075 MS.gene052253:intron 45.0%
!!! TACAGGGTTTTGAAGCTCCA+TGG - 20888:66025-66044 MS.gene052253:intron 45.0%
!!! TGTCATTTTCATGTCGGTGG+CGG - 20888:65059-65078 MS.gene052253:intron 45.0%
CTCCGTATTCATTGGAGGCA+AGG - 20888:65676-65695 MS.gene052253:intron 50.0%
GCCCTTGCCTCCAATGAATA+CGG + 20888:65681-65700 MS.gene052253:intergenic 50.0%
! CTACACTTGTCTGAGACGGA+AGG - 20888:64921-64940 MS.gene052253:intron 50.0%
! CTCTCAGAGCTCAGTTGGTA+TGG + 20888:64470-64489 MS.gene052253:intergenic 50.0%
! CTGTTGCTGATGGTGTCTCT+GGG - 20888:63325-63344 MS.gene052253:intron 50.0%
!! CATACCAACTGAGCTCTGAG+AGG - 20888:64468-64487 MS.gene052253:intron 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG - 20888:66028-66047 MS.gene052253:intron 50.0%
CAACCCTCTCAGAGCTCAGT+TGG + 20888:64475-64494 MS.gene052253:intergenic 55.0%
GCTTCACAGTTGGGCTGAAG+AGG - 20888:63726-63745 MS.gene052253:intron 55.0%
TTCATTGGAGGCAAGGGCCA+AGG - 20888:65683-65702 MS.gene052253:intron 55.0%
! GCTGTTGCTGATGGTGTCTC+TGG - 20888:63324-63343 MS.gene052253:intron 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG - 20888:64473-64492 MS.gene052253:intron 55.0%


Chromosome Type Strat End Strand Name
20888 gene 62876 66209 62876 ID=MS.gene052253
20888 mRNA 62876 66209 62876 ID=MS.gene052253.t1;Parent=MS.gene052253
20888 exon 66055 66209 66055 ID=MS.gene052253.t1.exon1;Parent=MS.gene052253.t1
20888 CDS 66055 66209 66055 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 65909 65963 65909 ID=MS.gene052253.t1.exon2;Parent=MS.gene052253.t1
20888 CDS 65909 65963 65909 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 65739 65818 65739 ID=MS.gene052253.t1.exon3;Parent=MS.gene052253.t1
20888 CDS 65739 65818 65739 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 65269 65350 65269 ID=MS.gene052253.t1.exon4;Parent=MS.gene052253.t1
20888 CDS 65269 65350 65269 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 64984 65054 64984 ID=MS.gene052253.t1.exon5;Parent=MS.gene052253.t1
20888 CDS 64984 65054 64984 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 64774 64853 64774 ID=MS.gene052253.t1.exon6;Parent=MS.gene052253.t1
20888 CDS 64774 64853 64774 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 64568 64665 64568 ID=MS.gene052253.t1.exon7;Parent=MS.gene052253.t1
20888 CDS 64568 64665 64568 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 63551 63671 63551 ID=MS.gene052253.t1.exon8;Parent=MS.gene052253.t1
20888 CDS 63551 63671 63551 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 63381 63463 63381 ID=MS.gene052253.t1.exon9;Parent=MS.gene052253.t1
20888 CDS 63381 63463 63381 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 63007 63055 63007 ID=MS.gene052253.t1.exon10;Parent=MS.gene052253.t1
20888 CDS 63007 63055 63007 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
20888 exon 62876 62928 62876 ID=MS.gene052253.t1.exon11;Parent=MS.gene052253.t1
20888 CDS 62876 62928 62876 ID=cds.MS.gene052253.t1;Parent=MS.gene052253.t1
Gene Sequence

>MS.gene052253

ATGGCTATTTCAATATTAAGAGCTGTAATGGTATCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATTGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTTCTCATTCTTCAGAACTTAACCCTGTAATTAGGTTAGTAAACTCTTCATTTTTTGTTTAACTATTAATGCTTAATACTTTTTTTAGGTCTATGTTAGAATTGGGTTTTGGTTTTACTTTATAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTAATAGTAATTATATAGTTAACACTAGTTACATGTTGTTTTGTGTATTTGTTACTTGTTAGAGACTTAGAGTTGTGGTGTTTCTTGAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGGTATGCTACTTACTCACTAATTCATTATTGGCAAAAAACTACTTTCAGATTCATTGAACAACTTATGTATCTTGTCTATAATATTATAGACCAGATACATCATTTATTAGTTGAATCTAAAAAGTTGTTTTTTGCTTATAATAGTGACCAGAAGGTGTAAGTTTTTATATGATAAACAAATATTATAAGCTTATATGATAAAAAAATGTTTAATTAAATTGTTTATCCAAACAAGGCATTACTATCATTAAACAAACACAAAATGACACCCTGACTAAAATCTTGCTTTGTTTTTCAGTTATAAATTTAGATGGTGTTGTTATGCATCATATTGAGATCTTGTCTTGTGACAATTTGTCTCAACGTGTTGTTGTGTTATGCTTCACAGTTGGGCTGAAGAGGATGTAGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTACCGTACCCTAAACGCAGATACTGATTATGACTATTCGTAGAATAACATTATATTTGCTTTCCAGTTACATTCATTCTTTTGAAATTTAGAATGATATCTGTTTTTTATCTTTAAATTTTGAGCTGTAATTCAATAAGAATGGTTATATGCATGTTGTTTGGTGACAAAGTAACAAACATGTTGATTCGTTGAATATTGGTTGATTTTGCAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCAGCAACTGTGTAAGTTTATCCTCTTTTATTTAGGTTGCTAATTTGGAGTAAAAAGATCAAACATTGCTATGCATTTTAATATTCAAACTATTCTACCACAATATAGCCTCAACAATTTCTTGTCTGTGATTCTGTGAAGCATCATTGCTATGCTGGAAAAGAATGGGAATCTAAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATCCGTAATGGTAATATCTCATGTTATAAAAGGAGTTAAATCTTCCCTATATGTTTTTTTCCTCATCGAAAACACTTTGAATGTTGAGAACTTGAATTTCTCGGTGTTCTCCTTTCAGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCATACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAACATTTAGCAATTGTAACTACTATTATATCATTAACTTAGTTTCCTTTTCCTAATCCTCTATTTGTCTTCACTTCACTCTTTTTTAAGATTTCTAAACCTGCCTTATATATAAATTTGTGTATGTGAAATAGTCAATGATGAGAAAAGGGAAAATAAGCACAAAAATCAACCACCTAAACTTTCTTGCTCAGATTGAGACAGATAACTAAATTACTAATATTAATACTCCCAGCATAATCCGATGCTACACAACAATACCCCCTCCGTCTCATAATAAGTGTCACTTTTGCATTTTTTTTCTCTGTCTCAAAATAAGAGTGTTTTAGTAAATGATACTAATTTTACCATTAAAATCACCACAACTAATCATTTCCTTAAGAACTGTGCACAACCCAAATGCTACACTTGTCTGAGACGGAAGGAGTATTTTATAATGTTTTTTGCTATGAAATATAGACGCAAATACCAAAGACGACGTTGACACATAAACACCGGTAATAATTTGATAAAATAGAAGTGATTGAATGTAACTACCTGTGTCATTTTCATGTCGGTGGCGGACACCAGACACAACTTCAATCTGAAATTTCGATTTTGCATAGAATTTTTAGGCTCACGTGCCAGCCAAAATATTGGCTTTGGGTTAAGGGGTCCAGTTTCTTTGTTATTATTTTCCATAGTTATTGTTGTACATTAGTTCCCCCTAAACTCTTGTATTTCTGTTAAAATAGCTTAGTTTCTTGATTTGGGTGAAGGCCAAGTTATGTGTTATCATATTGAGTCACAGCATAATACACAACACAACTTCCCAAAGGGGATATAATCTCATTTCACACCTGATACAAATGTATTTCTGTTATATTTTCTTTTACTAACCTTGACAGAAAAACAGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTCATGGGATCTGATGGGCTTTTTGATAATGTTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGGTATGGTCCTTCTTCTTTGTTGATCTGTTTGAGGAATTGCGATCAACTGTAGGAATTTCACTGATTCACAGTTCATTTTGTTGCTAGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCAAATTTTGATTCTCCGTATTCATTGGAGGCAAGGGCCAAGGTAAAGAAATAAGTTTGTAACTAAATTTCATTTGCTTTACAACAACAAATATTATTTAAAATGATGCATTATTTTATGATTGTCAGTTTTGGAAAATGACTTCTTAATAGGGAAGCGACCTTCTAAGTTTTAAAAGAGTCGCAGTCGTTGAACAAGTTGACAATTGTACTAATGACTAAAAAGATATTGTTTGCAAGAAACACCAAAAGAAGTTGAAACACGTTCTAGAAAATTAGTTTGCGTAAAATAGATGGACAAATAAAAAAGCAAAACAATTTTATGAACTATCTTTTTCTTTTTTGATGCATTGTCAACAATTTTACAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGGATGAAGTTGACAGGTATGGTATAGAAAATTCTATAATAACTTATATTTTCTATCTATATGTTGCTGACTTTACTTTTTCTATTGTTAACAGGTGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTATAAATTCATGA

Protein sequence

>MS.gene052253.t1

MAISILRAVMVSNSHCQSQPHIHNISSIDENAKRRKRVVFSSHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNVFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVINS