AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57613

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57613.t1 MTR_4g126150 94.044 319 19 0 6 324 209 527 0.0 631
MS.gene57613.t1 MTR_2g039410 71.605 324 85 4 6 323 216 538 1.26e-173 492
MS.gene57613.t1 MTR_4g126160 59.006 322 124 2 6 323 201 518 9.33e-143 413
MS.gene57613.t1 MTR_2g039340 56.832 322 130 3 6 322 204 521 1.33e-134 392
MS.gene57613.t1 MTR_3g112350 51.703 323 148 4 6 323 204 523 2.32e-115 343
MS.gene57613.t1 MTR_4g044110 49.538 325 153 6 6 324 204 523 5.20e-109 327
MS.gene57613.t1 MTR_3g036100 50.156 321 153 6 6 324 227 542 7.45e-108 325
MS.gene57613.t1 MTR_7g090920 47.077 325 161 5 6 324 219 538 3.00e-105 318
MS.gene57613.t1 MTR_1g015410 38.957 326 190 5 6 324 182 505 2.41e-84 263
MS.gene57613.t1 MTR_0005s0070 49.254 134 64 4 6 138 135 265 1.35e-36 133
MS.gene57613.t1 MTR_2g039360 38.202 89 54 1 237 324 76 164 3.52e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57613.t1 AT5G56970 58.934 319 129 2 6 324 203 519 3.28e-143 414
MS.gene57613.t1 AT4G29740 52.500 320 146 3 6 323 209 524 5.39e-122 360
MS.gene57613.t1 AT1G75450 51.703 323 147 4 6 322 201 520 1.48e-118 352
MS.gene57613.t1 AT2G19500 51.562 320 148 3 6 322 186 501 2.22e-118 350
MS.gene57613.t1 AT1G75450 51.863 322 146 4 7 322 199 517 2.33e-118 352
MS.gene57613.t1 AT2G41510 47.385 325 160 5 6 324 222 541 5.84e-107 323
MS.gene57613.t1 AT2G41510 47.385 325 160 5 6 324 284 603 2.17e-106 324
MS.gene57613.t1 AT3G63440 44.923 325 169 4 6 324 208 528 1.14e-102 311
MS.gene57613.t1 AT5G21482 42.508 327 178 6 6 324 198 522 2.96e-90 279
MS.gene57613.t1 AT5G56970 56.502 223 95 2 6 228 203 423 4.31e-89 273
MS.gene57613.t1 AT4G29740 53.125 224 100 2 6 228 209 428 7.76e-80 249
MS.gene57613.t1 AT2G41510 49.107 224 108 4 6 228 222 440 7.58e-70 224
MS.gene57613.t1 AT4G29740 55.224 134 55 2 6 138 209 338 1.77e-43 153

Find 61 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCCAATATTTGAGATTT+TGG 0.091010 8.4:-8860399 None:intergenic
ACTCAAGTGGATTTGATAAT+TGG 0.142815 8.4:+8860715 MS.gene57613:CDS
AGAGGATCTCCAATTATTTA+TGG 0.156095 8.4:-8859746 None:intergenic
GTTATTAAAGAAGCTATTCT+AGG 0.268705 8.4:-8859793 None:intergenic
CTTGGAGGTTTAGGACAATT+TGG 0.270154 8.4:+8858240 MS.gene57613:CDS
CACTAAATGGAAGAGTTTCT+TGG 0.279225 8.4:+8860854 MS.gene57613:CDS
CATACCAAAATCTCAAATAT+TGG 0.281178 8.4:+8860395 MS.gene57613:CDS
GATTAACCGTTCCTGATCTT+TGG 0.286822 8.4:-8859665 None:intergenic
CGAATGGGTATGTTTGATTC+AGG 0.289544 8.4:+8858159 None:intergenic
CACGCGGTTCTTGGAGGTTT+AGG 0.307047 8.4:+8858231 MS.gene57613:CDS
TGATCATCAATCCGAGAAAA+TGG 0.314927 8.4:+8859858 MS.gene57613:CDS
AACAAGGCTCCATAAATAAT+TGG 0.334966 8.4:+8859737 MS.gene57613:CDS
GAGTTATATCACGCGGTTCT+TGG 0.336072 8.4:+8858222 MS.gene57613:CDS
TGGACTTCATTATGAGAAAA+AGG 0.342313 8.4:+8860275 MS.gene57613:CDS
ATAATGAAGTCCAGGGATAT+AGG 0.394085 8.4:-8860265 None:intergenic
GGTATGTTTGATTCAGGAAA+AGG 0.408011 8.4:+8858165 MS.gene57613:CDS
TCTTCTTGTGTGCTGTGGTT+AGG 0.411365 8.4:-8860813 None:intergenic
GCAGTAGATAATGCTGTGTT+TGG 0.425996 8.4:-8859815 None:intergenic
CATAATATGTAGCAAATTCA+AGG 0.448202 8.4:-8859837 None:intergenic
CAGTATAACCGTACCGTTGT+GGG 0.463521 8.4:-8858300 None:intergenic
ACCACAGCACACAAGAAGAT+TGG 0.465569 8.4:+8860817 MS.gene57613:CDS
AACCGTACCGTTGTGGGAGC+TGG 0.467417 8.4:-8858294 None:intergenic
TCCAATCTTCTTGTGTGCTG+TGG 0.478791 8.4:-8860818 None:intergenic
CATCACCAGTGGAACTGTCT+TGG 0.486622 8.4:+8860461 MS.gene57613:CDS
GAACGGTTAATCTCAATCAA+TGG 0.491339 8.4:+8859676 MS.gene57613:CDS
TCCAGGTGATAAAATCATCC+TGG 0.493495 8.4:-8860898 None:intergenic
TTCTAGGATGGTCAGATTGA+GGG 0.495813 8.4:-8859777 None:intergenic
AGCTTCAGTCACAAGGATTG+TGG 0.497703 8.4:+8860343 MS.gene57613:CDS
GAGGATGTCTTCTACACAGT+TGG 0.497926 8.4:+8860684 MS.gene57613:CDS
GGTATGAATAAATTAAGCCA+TGG 0.512499 8.4:-8860378 None:intergenic
GCTTCAGTCACAAGGATTGT+GGG 0.515662 8.4:+8860344 MS.gene57613:CDS
ATTCTAGGATGGTCAGATTG+AGG 0.517004 8.4:-8859778 None:intergenic
TGTGGGAAGTTCCTCACCCA+TGG 0.522276 8.4:+8860361 MS.gene57613:CDS
TGGCATGTATACAGGTTAAG+TGG 0.526926 8.4:+8859608 MS.gene57613:intron
TTAAATCCAGGTGGGACGAT+AGG 0.539047 8.4:+8860640 MS.gene57613:intron
GTTGGATTCTTACACTCAAG+TGG 0.539696 8.4:+8860702 MS.gene57613:CDS
GTGTAGAAGACATCCTCGTT+TGG 0.543503 8.4:-8860678 None:intergenic
TTATATCACGCGGTTCTTGG+AGG 0.553109 8.4:+8858225 MS.gene57613:CDS
GGTTAATCTCAATCAATGGA+AGG 0.556622 8.4:+8859680 MS.gene57613:CDS
GACAATTTGGAGTTATAACA+AGG 0.558388 8.4:+8858253 MS.gene57613:CDS
TTAAAGAAGCTATTCTAGGA+TGG 0.561768 8.4:-8859789 None:intergenic
GTATGAATAAATTAAGCCAT+GGG 0.562092 8.4:-8860377 None:intergenic
CAAGGACTAGCCTATATCCC+TGG 0.572971 8.4:+8860255 MS.gene57613:CDS
CCAGGTGATAAAATCATCCT+GGG 0.575746 8.4:-8860897 None:intergenic
GTTAATCTCAATCAATGGAA+GGG 0.578188 8.4:+8859681 MS.gene57613:CDS
AGATTGAGGGAAGAAATTAG+AGG 0.583674 8.4:-8859764 None:intergenic
GAGTTGAAGCTTCAGTCACA+AGG 0.583991 8.4:+8860336 MS.gene57613:CDS
ACAAGCACAAGTTTGATCCC+AGG 0.598194 8.4:+8860880 MS.gene57613:CDS
AATAAATTAAGCCATGGGTG+AGG 0.606021 8.4:-8860372 None:intergenic
GTAAACCAAGACAGTTCCAC+TGG 0.612320 8.4:-8860466 None:intergenic
TTCTTGAATAGAGTCCGAAG+TGG 0.613739 8.4:+8860312 MS.gene57613:CDS
TCAGTATAACCGTACCGTTG+TGG 0.626101 8.4:-8858301 None:intergenic
ATCCGAGAAAATGGTGGACA+AGG 0.628901 8.4:+8859867 MS.gene57613:CDS
ATTAAAAGAAACATCACCAG+TGG 0.637357 8.4:+8860450 MS.gene57613:CDS
GAAGCTTCAACTCTCCACTT+CGG 0.640974 8.4:-8860326 None:intergenic
ACAATTTGGAGTTATAACAA+GGG 0.641357 8.4:+8858254 MS.gene57613:CDS
TCATCAATCCGAGAAAATGG+TGG 0.643829 8.4:+8859861 MS.gene57613:CDS
GGGATGCTGCTAATGCAACA+AGG 0.647362 8.4:+8859721 MS.gene57613:CDS
GAATTCAGAGTTATATCACG+CGG 0.664876 8.4:+8858215 MS.gene57613:CDS
TCTTCAGCCAGCTCCCACAA+CGG 0.665337 8.4:+8858287 MS.gene57613:CDS
GTCAGCAATGATACCAAACG+AGG 0.778680 8.4:+8860665 MS.gene57613:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATATTTTATCTTC+TGG - chr8.4:8860124-8860143 None:intergenic 10.0%
!!! TAAAGTTTAATTTTATCATT+GGG + chr8.4:8860053-8860072 MS.gene57613:intron 10.0%
!! ATATTCACAAATGAATATAT+AGG + chr8.4:8858791-8858810 MS.gene57613:intron 15.0%
!! CAATGATAAAATTAAACTTT+AGG - chr8.4:8860054-8860073 None:intergenic 15.0%
!! GTATACATAATTAAACAATA+CGG - chr8.4:8859538-8859557 None:intergenic 15.0%
!! TATACTTTAGTTAAAAAGTA+TGG - chr8.4:8858487-8858506 None:intergenic 15.0%
!!! AACTATTATCTTTTTCAATT+AGG - chr8.4:8859924-8859943 None:intergenic 15.0%
!!! AATCTTGTATTCTTTTTTTT+TGG + chr8.4:8859384-8859403 MS.gene57613:intron 15.0%
!!! AATTACAATATTTTATCTCT+TGG - chr8.4:8860155-8860174 None:intergenic 15.0%
!!! CTAAAGTTTAATTTTATCAT+TGG + chr8.4:8860052-8860071 MS.gene57613:intron 15.0%
!!! GTGATTTTTGAATATTTATA+TGG - chr8.4:8859346-8859365 None:intergenic 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG + chr8.4:8859115-8859134 MS.gene57613:intron 15.0%
!! AATATGTCAAATACATCTAA+AGG + chr8.4:8858924-8858943 MS.gene57613:intron 20.0%
!! ATTAAAGAAAATCCAATAGA+CGG - chr8.4:8859895-8859914 None:intergenic 20.0%
!! ATTACATGAAATTTAAATCC+AGG + chr8.4:8860628-8860647 MS.gene57613:intron 20.0%
!! CAATAACAATTAAGAAAAGA+AGG + chr8.4:8860589-8860608 MS.gene57613:intron 20.0%
!! GATAAATCATAATATATGCA+TGG - chr8.4:8859435-8859454 None:intergenic 20.0%
!! TTAGTATAAGACATTAGTAA+TGG + chr8.4:8859574-8859593 MS.gene57613:intron 20.0%
!!! AAAAACTAAAATGACTTGTT+TGG - chr8.4:8859001-8859020 None:intergenic 20.0%
!!! AAAACTAAAATGACTTGTTT+GGG - chr8.4:8859000-8859019 None:intergenic 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG - chr8.4:8859114-8859133 None:intergenic 20.0%
!!! AAAGATGACTAATTTTAAGT+GGG - chr8.4:8859113-8859132 None:intergenic 20.0%
!!! AAATCCAATATTTGAGATTT+TGG - chr8.4:8860402-8860421 None:intergenic 20.0%
!!! ATCTTGTATTCTAATTTTGA+CGG + chr8.4:8859483-8859502 MS.gene57613:intron 20.0%
!!! CAAATATTGGATTTTAATTC+AGG + chr8.4:8860408-8860427 MS.gene57613:CDS 20.0%
!!! TTCTTTTTCTTTGTTTATGT+AGG + chr8.4:8860215-8860234 MS.gene57613:intron 20.0%
! ACTAGTATTGTTAACATTCT+TGG + chr8.4:8858710-8858729 MS.gene57613:intron 25.0%
! CATAATATGTAGCAAATTCA+AGG - chr8.4:8859840-8859859 None:intergenic 25.0%
! CATACCAAAATCTCAAATAT+TGG + chr8.4:8860395-8860414 MS.gene57613:CDS 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr8.4:8859213-8859232 MS.gene57613:intron 25.0%
! GAAACTTAAAGGACTTATTT+GGG + chr8.4:8859253-8859272 MS.gene57613:intron 25.0%
! GTATGAATAAATTAAGCCAT+GGG - chr8.4:8860380-8860399 None:intergenic 25.0%
! GTTATTAAAGAAGCTATTCT+AGG - chr8.4:8859796-8859815 None:intergenic 25.0%
! TATATATATGATCGACAACT+AGG - chr8.4:8858391-8858410 None:intergenic 25.0%
! TGAAACTTAAAGGACTTATT+TGG + chr8.4:8859252-8859271 MS.gene57613:intron 25.0%
! TTAACAATACTAGTAGATTG+TGG - chr8.4:8858704-8858723 None:intergenic 25.0%
!! ACAATTTGGAGTTATAACAA+GGG + chr8.4:8858254-8858273 MS.gene57613:CDS 25.0%
!! ACATTAGTAATGGTGAATTT+TGG + chr8.4:8859584-8859603 MS.gene57613:intron 25.0%
!! GAAGATTGGAAAAAACATTT+TGG + chr8.4:8860831-8860850 MS.gene57613:CDS 25.0%
!!! AAAAACATTTTGGCACTAAA+TGG + chr8.4:8860841-8860860 MS.gene57613:CDS 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - chr8.4:8858428-8858447 None:intergenic 25.0%
!!! CTTACTTTGTTTTATTCATG+GGG - chr8.4:8860491-8860510 None:intergenic 25.0%
!!! CTTGTATTCTTTTTTTTTGG+TGG + chr8.4:8859387-8859406 MS.gene57613:intron 25.0%
!!! GCTTACTTTGTTTTATTCAT+GGG - chr8.4:8860492-8860511 None:intergenic 25.0%
!!! TTGAGACTTTTGAAACTTAA+AGG + chr8.4:8859242-8859261 MS.gene57613:intron 25.0%
!!! TTTTAATTCAGGTGTATTCA+AGG + chr8.4:8860419-8860438 MS.gene57613:CDS 25.0%
AACAAGGCTCCATAAATAAT+TGG + chr8.4:8859737-8859756 MS.gene57613:CDS 30.0%
ACATGAAATTTAAATCCAGG+TGG + chr8.4:8860631-8860650 MS.gene57613:intron 30.0%
AGAGGATCTCCAATTATTTA+TGG - chr8.4:8859749-8859768 None:intergenic 30.0%
ATAGTATGAATCGTTGAATG+TGG + chr8.4:8858868-8858887 MS.gene57613:intron 30.0%
ATATGGTCAAATGCATCTAA+AGG - chr8.4:8859329-8859348 None:intergenic 30.0%
ATTAAAAGAAACATCACCAG+TGG + chr8.4:8860450-8860469 MS.gene57613:CDS 30.0%
CAAAGTATATGGCATTTCAA+AGG - chr8.4:8860514-8860533 None:intergenic 30.0%
CATGAAATTTAAATCCAGGT+GGG + chr8.4:8860632-8860651 MS.gene57613:intron 30.0%
CCAACTATGCTATCTATAAT+AGG - chr8.4:8859042-8859061 None:intergenic 30.0%
CCTATTATAGATAGCATAGT+TGG + chr8.4:8859039-8859058 MS.gene57613:intron 30.0%
GAAACTTAAATGACCACTTT+GGG + chr8.4:8859282-8859301 MS.gene57613:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr8.4:8859302-8859321 MS.gene57613:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr8.4:8859321-8859302 None:intergenic 30.0%
GGTATGAATAAATTAAGCCA+TGG - chr8.4:8860381-8860400 None:intergenic 30.0%
GTTAATCTCAATCAATGGAA+GGG + chr8.4:8859681-8859700 MS.gene57613:CDS 30.0%
TAGTCAAGATTAAACGTCTA+GGG - chr8.4:8860095-8860114 None:intergenic 30.0%
TCATGATGACTCAAAGTATA+TGG - chr8.4:8860525-8860544 None:intergenic 30.0%
TGAAACTTAAATGACCACTT+TGG + chr8.4:8859281-8859300 MS.gene57613:intron 30.0%
TGGACTTCATTATGAGAAAA+AGG + chr8.4:8860275-8860294 MS.gene57613:CDS 30.0%
TTGTGAATATAAGCCTTTCA+CGG - chr8.4:8858781-8858800 None:intergenic 30.0%
! ACTCAAGTGGATTTGATAAT+TGG + chr8.4:8860715-8860734 MS.gene57613:CDS 30.0%
! GAAATTGACATTTTGCTTCA+AGG + chr8.4:8860237-8860256 MS.gene57613:CDS 30.0%
! GACAATTTGGAGTTATAACA+AGG + chr8.4:8858253-8858272 MS.gene57613:CDS 30.0%
! TTAAAGAAGCTATTCTAGGA+TGG - chr8.4:8859792-8859811 None:intergenic 30.0%
! TTTCAAACAAGTCCTTTTAG+AGG - chr8.4:8859197-8859216 None:intergenic 30.0%
! TTTTCTCATAATGAAGTCCA+GGG - chr8.4:8860275-8860294 None:intergenic 30.0%
! TTTTTCTCATAATGAAGTCC+AGG - chr8.4:8860276-8860295 None:intergenic 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG - chr8.4:8859106-8859125 None:intergenic 30.0%
!! ATTAGTCATCTTTTTAGGCA+TGG + chr8.4:8859120-8859139 MS.gene57613:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG + chr8.4:8858649-8858668 MS.gene57613:intron 30.0%
!! TAGTAATGGTGAATTTTGGT+TGG + chr8.4:8859588-8859607 MS.gene57613:intron 30.0%
!!! AGCAATAACTTTTTGCTGTT+AGG + chr8.4:8860028-8860047 MS.gene57613:intron 30.0%
!!! GGCTTACTTTGTTTTATTCA+TGG - chr8.4:8860493-8860512 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr8.4:8859290-8859271 None:intergenic 30.0%
!!! TTGTTGAAGATTTTTTGTCC+AGG - chr8.4:8860918-8860937 None:intergenic 30.0%
AATAAATTAAGCCATGGGTG+AGG - chr8.4:8860375-8860394 None:intergenic 35.0%
ACAGTGCACATTGCAAAAAT+TGG - chr8.4:8858446-8858465 None:intergenic 35.0%
AGATTGAGGGAAGAAATTAG+AGG - chr8.4:8859767-8859786 None:intergenic 35.0%
ATAATGAAGTCCAGGGATAT+AGG - chr8.4:8860268-8860287 None:intergenic 35.0%
ATACTAGTAGATTGTGGACA+AGG - chr8.4:8858698-8858717 None:intergenic 35.0%
CACTAAATGGAAGAGTTTCT+TGG + chr8.4:8860854-8860873 MS.gene57613:CDS 35.0%
CATAATATATGCATGGTCCA+GGG - chr8.4:8859428-8859447 None:intergenic 35.0%
CATATGTGAAGTGATTGACT+TGG + chr8.4:8858631-8858650 MS.gene57613:intron 35.0%
CATCATCATCATCCTCTAAA+AGG + chr8.4:8859182-8859201 MS.gene57613:intron 35.0%
CTAGTCAAGATTAAACGTCT+AGG - chr8.4:8860096-8860115 None:intergenic 35.0%
GAAACTTAAAGGACCACTTT+GGG - chr8.4:8858971-8858990 None:intergenic 35.0%
GAACGGTTAATCTCAATCAA+TGG + chr8.4:8859676-8859695 MS.gene57613:CDS 35.0%
GAATTCAGAGTTATATCACG+CGG + chr8.4:8858215-8858234 MS.gene57613:CDS 35.0%
GGTATGTTTGATTCAGGAAA+AGG + chr8.4:8858165-8858184 MS.gene57613:CDS 35.0%
GGTTAATCTCAATCAATGGA+AGG + chr8.4:8859680-8859699 MS.gene57613:CDS 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr8.4:8858608-8858627 MS.gene57613:intron 35.0%
TACCAAGTGAGTTAAGATCA+CGG + chr8.4:8859457-8859476 MS.gene57613:intron 35.0%
TCATAATATATGCATGGTCC+AGG - chr8.4:8859429-8859448 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG - chr8.4:8858972-8858991 None:intergenic 35.0%
TGATCATCAATCCGAGAAAA+TGG + chr8.4:8859858-8859877 MS.gene57613:CDS 35.0%
TGATCTTAACTCACTTGGTA+AGG - chr8.4:8859457-8859476 None:intergenic 35.0%
! AGGGAATTGAACTTTTTGGA+AGG + chr8.4:8859700-8859719 MS.gene57613:CDS 35.0%
! CTTTTACCAAAGATCAGGAA+CGG + chr8.4:8859659-8859678 MS.gene57613:CDS 35.0%
! TGGAAGGGAATTGAACTTTT+TGG + chr8.4:8859696-8859715 MS.gene57613:CDS 35.0%
!! ATCTTTTTAGGCATGGCAAA+TGG + chr8.4:8859127-8859146 MS.gene57613:intron 35.0%
!! GGGAATTGAACTTTTTGGAA+GGG + chr8.4:8859701-8859720 MS.gene57613:CDS 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG + chr8.4:8858955-8858974 MS.gene57613:intron 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG - chr8.4:8858974-8858955 None:intergenic 35.0%
!! TAGATTTGGTGTACGTTTGT+TGG - chr8.4:8858368-8858387 None:intergenic 35.0%
!! TTCTGCTTTTACCAAAGATC+AGG + chr8.4:8859654-8859673 MS.gene57613:CDS 35.0%
!! TTGAAGTTTTGTAGTGATGC+TGG + chr8.4:8860768-8860787 MS.gene57613:CDS 35.0%
!!! ATTTTGGTTGGCATGTATAC+AGG + chr8.4:8859600-8859619 MS.gene57613:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr8.4:8858672-8858653 None:intergenic 35.0%
!!! TTTTTTTTTGGTGGTGTCCA+AGG + chr8.4:8859396-8859415 MS.gene57613:intron 35.0%
ACCAAGTGAGTTAAGATCAC+GGG + chr8.4:8859458-8859477 MS.gene57613:intron 40.0%
CCAGGTGATAAAATCATCCT+GGG - chr8.4:8860900-8860919 None:intergenic 40.0%
GATCGACAACTAGGTAGATT+TGG - chr8.4:8858382-8858401 None:intergenic 40.0%
GATTAACCGTTCCTGATCTT+TGG - chr8.4:8859668-8859687 None:intergenic 40.0%
GCAGTAGATAATGCTGTGTT+TGG - chr8.4:8859818-8859837 None:intergenic 40.0%
GTCATCTTTGGTACCAAATC+TGG + chr8.4:8859078-8859097 MS.gene57613:intron 40.0%
GTTGGATTCTTACACTCAAG+TGG + chr8.4:8860702-8860721 MS.gene57613:CDS 40.0%
TCATCAATCCGAGAAAATGG+TGG + chr8.4:8859861-8859880 MS.gene57613:CDS 40.0%
TCCAGGTGATAAAATCATCC+TGG - chr8.4:8860901-8860920 None:intergenic 40.0%
TGCTTCCTTGAAGTCATCTT+TGG + chr8.4:8859066-8859085 MS.gene57613:intron 40.0%
TGGCATGTATACAGGTTAAG+TGG + chr8.4:8859608-8859627 MS.gene57613:intron 40.0%
TGGTACCAAAGATGACTTCA+AGG - chr8.4:8859074-8859093 None:intergenic 40.0%
TTCCATTAGTCATCCGTGAA+AGG + chr8.4:8858765-8858784 MS.gene57613:intron 40.0%
TTCTTGAATAGAGTCCGAAG+TGG + chr8.4:8860312-8860331 MS.gene57613:CDS 40.0%
! CTTGGAGGTTTAGGACAATT+TGG + chr8.4:8858240-8858259 MS.gene57613:CDS 40.0%
! TACCTTGTCCACCATTTTCT+CGG - chr8.4:8859872-8859891 None:intergenic 40.0%
!! ATTCTAGGATGGTCAGATTG+AGG - chr8.4:8859781-8859800 None:intergenic 40.0%
!! TTCTAGGATGGTCAGATTGA+GGG - chr8.4:8859780-8859799 None:intergenic 40.0%
!! TTTTTAGGCATGGCAAATGG+TGG + chr8.4:8859130-8859149 MS.gene57613:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr8.4:8858652-8858671 MS.gene57613:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr8.4:8858671-8858652 None:intergenic 40.0%
ACAAGCACAAGTTTGATCCC+AGG + chr8.4:8860880-8860899 MS.gene57613:CDS 45.0%
ACCACAGCACACAAGAAGAT+TGG + chr8.4:8860817-8860836 MS.gene57613:CDS 45.0%
AGCCTTTCACGGATGACTAA+TGG - chr8.4:8858770-8858789 None:intergenic 45.0%
AGCTTCAGTCACAAGGATTG+TGG + chr8.4:8860343-8860362 MS.gene57613:CDS 45.0%
CAAGTGAGTTAAGATCACGG+GGG + chr8.4:8859460-8859479 MS.gene57613:intron 45.0%
CAGTATAACCGTACCGTTGT+GGG - chr8.4:8858303-8858322 None:intergenic 45.0%
CCAAGTGAGTTAAGATCACG+GGG + chr8.4:8859459-8859478 MS.gene57613:intron 45.0%
GAAGCTTCAACTCTCCACTT+CGG - chr8.4:8860329-8860348 None:intergenic 45.0%
GAGGATGTCTTCTACACAGT+TGG + chr8.4:8860684-8860703 MS.gene57613:CDS 45.0%
GAGTTATATCACGCGGTTCT+TGG + chr8.4:8858222-8858241 MS.gene57613:CDS 45.0%
GAGTTGAAGCTTCAGTCACA+AGG + chr8.4:8860336-8860355 MS.gene57613:CDS 45.0%
GCTTCAGTCACAAGGATTGT+GGG + chr8.4:8860344-8860363 MS.gene57613:CDS 45.0%
GTAAACCAAGACAGTTCCAC+TGG - chr8.4:8860469-8860488 None:intergenic 45.0%
GTCAGCAATGATACCAAACG+AGG + chr8.4:8860665-8860684 MS.gene57613:CDS 45.0%
GTGTAGAAGACATCCTCGTT+TGG - chr8.4:8860681-8860700 None:intergenic 45.0%
TCAGTATAACCGTACCGTTG+TGG - chr8.4:8858304-8858323 None:intergenic 45.0%
TCCAATCTTCTTGTGTGCTG+TGG - chr8.4:8860821-8860840 None:intergenic 45.0%
TCTTCTTGTGTGCTGTGGTT+AGG - chr8.4:8860816-8860835 None:intergenic 45.0%
TTAAATCCAGGTGGGACGAT+AGG + chr8.4:8860640-8860659 MS.gene57613:intron 45.0%
TTATATCACGCGGTTCTTGG+AGG + chr8.4:8858225-8858244 MS.gene57613:CDS 45.0%
! CCCAGGATGATTTTATCACC+TGG + chr8.4:8860897-8860916 MS.gene57613:CDS 45.0%
!! ATCCGAGAAAATGGTGGACA+AGG + chr8.4:8859867-8859886 MS.gene57613:CDS 45.0%
!! TATATAATTAAAGATATTAA+CGG + chr8.4:8858591-8858610 MS.gene57613:intron 5.0%
ATGGTCCAGGGTTCAAACCT+TGG - chr8.4:8859416-8859435 None:intergenic 50.0%
CATCACCAGTGGAACTGTCT+TGG + chr8.4:8860461-8860480 MS.gene57613:CDS 50.0%
CCCCGTGATCTTAACTCACT+TGG - chr8.4:8859462-8859481 None:intergenic 50.0%
GGGATGCTGCTAATGCAACA+AGG + chr8.4:8859721-8859740 MS.gene57613:CDS 50.0%
TGGGTGTTAGGAGCCAGATT+TGG - chr8.4:8859094-8859113 None:intergenic 50.0%
!! CAAGGACTAGCCTATATCCC+TGG + chr8.4:8860255-8860274 MS.gene57613:CDS 50.0%
!! GTGGACAAGGTACCGTCTAT+TGG + chr8.4:8859880-8859899 MS.gene57613:intron 50.0%
CACGCGGTTCTTGGAGGTTT+AGG + chr8.4:8858231-8858250 MS.gene57613:CDS 55.0%
GGTGTCCAAGGTTTGAACCC+TGG + chr8.4:8859408-8859427 MS.gene57613:intron 55.0%
TCTTCAGCCAGCTCCCACAA+CGG + chr8.4:8858287-8858306 MS.gene57613:CDS 55.0%
TGACATCCTATCGTCCCACC+TGG - chr8.4:8860649-8860668 None:intergenic 55.0%
TGTGGGAAGTTCCTCACCCA+TGG + chr8.4:8860361-8860380 MS.gene57613:CDS 55.0%
AACCGTACCGTTGTGGGAGC+TGG - chr8.4:8858297-8858316 None:intergenic 60.0%
AGCCAGCTCCCACAACGGTA+CGG + chr8.4:8858292-8858311 MS.gene57613:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 8858162 8860941 8858162 ID=MS.gene57613
chr8.4 mRNA 8858162 8860941 8858162 ID=MS.gene57613.t1;Parent=MS.gene57613
chr8.4 exon 8858162 8858308 8858162 ID=MS.gene57613.t1.exon1;Parent=MS.gene57613.t1
chr8.4 CDS 8858162 8858308 8858162 ID=cds.MS.gene57613.t1;Parent=MS.gene57613.t1
chr8.4 exon 8859622 8859888 8859622 ID=MS.gene57613.t1.exon2;Parent=MS.gene57613.t1
chr8.4 CDS 8859622 8859888 8859622 ID=cds.MS.gene57613.t1;Parent=MS.gene57613.t1
chr8.4 exon 8860237 8860505 8860237 ID=MS.gene57613.t1.exon3;Parent=MS.gene57613.t1
chr8.4 CDS 8860237 8860505 8860237 ID=cds.MS.gene57613.t1;Parent=MS.gene57613.t1
chr8.4 exon 8860650 8860941 8860650 ID=MS.gene57613.t1.exon4;Parent=MS.gene57613.t1
chr8.4 CDS 8860650 8860941 8860650 ID=cds.MS.gene57613.t1;Parent=MS.gene57613.t1
Gene Sequence

>MS.gene57613

ATGGGTATGTTTGATTCAGGAAAAGGAGATTTTGTAAAATGCTCTTCTGAGAAGAATTCAGAGTTATATCACGCGGTTCTTGGAGGTTTAGGACAATTTGGAGTTATAACAAGGGCAAGAATTTCTCTTCAGCCAGCTCCCACAACGGTACGGTTATACTGAATTGTCAATAACTTTATTTTGTCTCTCGTGACATTTTTTCTCCAACAAACGTACACCAAATCTACCTAGTTGTCGATCATATATATATATATATACTCCCTCCGTTTCAAAATACATGTCCAATTTTTGCAATGTGCACTGTTCACTTGACTTACTTTGACCATACTTTTTAACTAAAGTATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTGTCTCGACAAATATTTTCAAAATATTAAAATTTTATAATTTTTTACTTTATATAATTAAAGATATTAACGGTCAAAATTGTGCATTGGCATATGTGAAGTGATTGACTTGGACATGTATTTTGAAACGGAGGAGTATATATTTTTGACATGTCCTTGTCCACAATCTACTAGTATTGTTAACATTCTTGGTAGTTACGCGTCATATATTTCACTTTGTACTGTTCCATTAGTCATCCGTGAAAGGCTTATATTCACAAATGAATATATAGGATGAGTTATATATACGTATGAGAATGAATAATTGATTTTTGAAAGAAAAAAAAAATAGTATGAATCGTTGAATGTGGACTTCTGAATATATATGCGAGTTTATAAATATAAATATGTCAAATACATCTAAAGGTCCTTTAAGTTTTTCGTTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCATTTTAGTTTTTGAATCGTTTCAAACAAGTCCTATTATAGATAGCATAGTTGGTAATTGCTTCCTTGAAGTCATCTTTGGTACCAAATCTGGCTCCTAACACCCACTTAAAATTAGTCATCTTTTTAGGCATGGCAAATGGTGGATAATGCTCTTTGTTGCTATCATCTGAATCATCATCATCATCCTCTAAAAGGACTTGTTTGAAACGATTCAAAAACTAAAAGGACTTGTTTGAGACTTTTGAAACTTAAAGGACTTATTTGGGACTTTTGAAACTTAAATGACCACTTTGGGAAAAACGAAAAACTTAAAGGACCTTTAGATGCATTTGACCATATAAATATTCAAAAATCACTCTTGAAATTAACACTCGAATCTTGTATTCTTTTTTTTTGGTGGTGTCCAAGGTTTGAACCCTGGACCATGCATATATTATGATTTATCCTTACCAAGTGAGTTAAGATCACGGGGGATCTTGTATTCTAATTTTGACGGTTGCATATAAGTATGCATTATAAAATATTCCGTATTGTTTAATTATGTATACATCAATTAATTGATTATTAGTATAAGACATTAGTAATGGTGAATTTTGGTTGGCATGTATACAGGTTAAGTGGATCAGATTGCTTTACAGTGACTTTTCTGCTTTTACCAAAGATCAGGAACGGTTAATCTCAATCAATGGAAGGGAATTGAACTTTTTGGAAGGGATGCTGCTAATGCAACAAGGCTCCATAAATAATTGGAGATCCTCTAATTTCTTCCCTCAATCTGACCATCCTAGAATAGCTTCTTTAATAACCAAACACAGCATTATCTACTGCCTTGAATTTGCTACATATTATGATCATCAATCCGAGAAAATGGTGGACAAGGTACCGTCTATTGGATTTTCTTTAATAGTAAACCTAATTGAAAAAGATAATAGTTCAAGAATTTAATTACAATTTTTTTTAATTTAAAAATCGAATTAAAAAATTTCAAATACGTAGTTAAGTAAGCTTGAAAATTAACAGCAATAACTTTTTGCTGTTAGGCCTAAAGTTTAATTTTATCATTGGGCTAGCAAACTCAATAACCCTAGACGTTTAATCTTGACTAGCTATACCAGAAGATAAAATATATTTTTTTGACAAAACCAAGAGATAAAATATTGTAATTGCATATCGTAGTTTATAAATATCAATAACATTATTATTTTTTCTTTTTCTTTGTTTATGTAGGAAATTGACATTTTGCTTCAAGGACTAGCCTATATCCCTGGACTTCATTATGAGAAAAAGGTCTCATATGTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGATTGTGGGAAGTTCCTCACCCATGGCTTAATTTATTCATACCAAAATCTCAAATATTGGATTTTAATTCAGGTGTATTCAAGGATATAATTATTAAAAGAAACATCACCAGTGGAACTGTCTTGGTTTACCCCATGAATAAAACAAAGTAAGCCTTTGAAATGCCATATACTTTGAGTCATCATGATCATTTTGTTGTTTTCAATTATTGTAAGTATAATTATATAATAACAATAACAATTAAGAAAAGAAGGATATAATCATTAATTAATTACATGAAATTTAAATCCAGGTGGGACGATAGGATGTCAGCAATGATACCAAACGAGGATGTCTTCTACACAGTTGGATTCTTACACTCAAGTGGATTTGATAATTGGAAAGCATATGAATCTCAAAACAAAGAAATTTTGAAGTTTTGTAGTGATGCTGGCATTGAAGCTAAGCAATATCTTCCTAACCACAGCACACAAGAAGATTGGAAAAAACATTTTGGCACTAAATGGAAGAGTTTCTTGGAAAACAAGCACAAGTTTGATCCCAGGATGATTTTATCACCTGGACAAAAAATCTTCAACAAATAA
Protein sequence

>MS.gene57613.t1

MGMFDSGKGDFVKCSSEKNSELYHAVLGGLGQFGVITRARISLQPAPTTVKWIRLLYSDFSAFTKDQERLISINGRELNFLEGMLLMQQGSINNWRSSNFFPQSDHPRIASLITKHSIIYCLEFATYYDHQSEKMVDKEIDILLQGLAYIPGLHYEKKVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFKDIIIKRNITSGTVLVYPMNKTKWDDRMSAMIPNEDVFYTVGFLHSSGFDNWKAYESQNKEILKFCSDAGIEAKQYLPNHSTQEDWKKHFGTKWKSFLENKHKFDPRMILSPGQKIFNK