AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050780.t1 MTR_7g111770 96.992 133 3 1 1 132 1 133 2.58e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAGGAAAAGTGTATT+TGG - 51782:19939-19958 MS.gene050780:CDS 20.0%
!! AGAAAATGATGATGAGAAAA+TGG - 51782:19847-19866 MS.gene050780:CDS 25.0%
!!! AAATCTTCAAGTTGAAAAGT+TGG + 51782:19968-19987 None:intergenic 25.0%
!!! TTGTCTTCATTTTGGTTTTT+TGG + 51782:20130-20149 None:intergenic 25.0%
AAACAGGAAGAGAAAAATGT+TGG - 51782:19814-19833 MS.gene050780:CDS 30.0%
ATCTCTTGTACTCTTTATCA+AGG + 51782:19885-19904 None:intergenic 30.0%
TTCATTGCTTGTGAAGAATT+GGG - 51782:19986-20005 MS.gene050780:CDS 30.0%
TTTCATTGCTTGTGAAGAAT+TGG - 51782:19985-20004 MS.gene050780:CDS 30.0%
! CTTTCTCTTTGTCTTCATTT+TGG + 51782:20138-20157 None:intergenic 30.0%
TTCTTCACAGCAAGAAAAAG+AGG - 51782:20039-20058 MS.gene050780:CDS 35.0%
!! TCTTTTTCTTGCTGTGAAGA+AGG + 51782:20040-20059 None:intergenic 35.0%
GAAGGTGGGTGAAGAAAAAA+AGG - 51782:19925-19944 MS.gene050780:CDS 40.0%
TCCAAAACAGACAAGAAGGT+GGG - 51782:19911-19930 MS.gene050780:CDS 40.0%
CCTCTCCAAAACAGACAAGA+AGG - 51782:19907-19926 MS.gene050780:CDS 45.0%
CTCCAAAACAGACAAGAAGG+TGG - 51782:19910-19929 MS.gene050780:CDS 45.0%
! ACCCACCTTCTTGTCTGTTT+TGG + 51782:19915-19934 None:intergenic 45.0%
! AGTAATGTTTCTGCTGCAGC+TGG - 51782:20013-20032 MS.gene050780:CDS 45.0%
!!! CCTTCTTGTCTGTTTTGGAG+AGG + 51782:19910-19929 None:intergenic 45.0%
!!! TTTTGGTGTCACTGCTGTAG+TGG + 51782:20113-20132 None:intergenic 45.0%


Chromosome Type Strat End Strand Name
51782 gene 19803 20201 19803 ID=MS.gene050780
51782 mRNA 19803 20201 19803 ID=MS.gene050780.t1;Parent=MS.gene050780
51782 exon 19803 20201 19803 ID=MS.gene050780.t1.exon1;Parent=MS.gene050780.t1
51782 CDS 19803 20201 19803 ID=cds.MS.gene050780.t1;Parent=MS.gene050780.t1
Gene Sequence

>MS.gene050780

ATGGAAGGAGAAAACAGGAAGAGAAAAATGTTGGAAGATGAAGAAGAAAATGATGATGAGAAAATGGAGAAGTTCTTTGCCTTGATAAAGAGTACAAGAGATATCCTCTCCAAAACAGACAAGAAGGTGGGTGAAGAAAAAAAGGAAAAGTGTATTTGGAATCCAACTTTTCAACTTGAAGATTTCATTGCTTGTGAAGAATTGGGAAAGAGTAATGTTTCTGCTGCAGCTGGTCCTTCTTCACAGCAAGAAAAAGAGGTGAAGATAATAGAGAAAGAATATGTGCAAGAAGTAGCTGCAAGTGCAACCACTACAGCAGTGACACCAAAAAACCAAAATGAAGACAAAGAGAAAGAAAAAGCAAGTGATAATAGCTTAGACTTAAATCTTTCTTTGTAA

Protein sequence

>MS.gene050780.t1

MEGENRKRKMLEDEEENDDEKMEKFFALIKSTRDILSKTDKKVGEEKKEKCIWNPTFQLEDFIACEELGKSNVSAAAGPSSQQEKEVKIIEKEYVQEVAASATTTAVTPKNQNEDKEKEKASDNSLDLNLSL