Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57615.t1 | XP_013458482.1 | 91.7 | 300 | 21 | 1 | 6 | 305 | 209 | 504 | 2.00E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57615.t1 | Q9LTS3 | 58.8 | 291 | 118 | 2 | 6 | 296 | 203 | 491 | 6.6e-104 | 378.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57615.t1 | A0A072UTW0 | 91.7 | 300 | 21 | 1 | 6 | 305 | 209 | 504 | 1.4e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051493 | MS.gene57615 | 0.806008 | 1.01E-49 | -1.69E-46 |
| MS.gene051862 | MS.gene57615 | 0.929135 | 1.07E-92 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57615.t1 | MTR_4g126150 | 91.667 | 300 | 21 | 1 | 6 | 305 | 209 | 504 | 0.0 | 574 |
| MS.gene57615.t1 | MTR_2g039410 | 70.492 | 305 | 81 | 4 | 6 | 305 | 216 | 516 | 2.43e-158 | 453 |
| MS.gene57615.t1 | MTR_4g126160 | 58.983 | 295 | 113 | 2 | 6 | 296 | 201 | 491 | 1.44e-129 | 379 |
| MS.gene57615.t1 | MTR_2g039340 | 55.892 | 297 | 122 | 3 | 6 | 297 | 204 | 496 | 6.68e-121 | 357 |
| MS.gene57615.t1 | MTR_3g112350 | 52.027 | 296 | 134 | 4 | 6 | 296 | 204 | 496 | 3.50e-105 | 317 |
| MS.gene57615.t1 | MTR_4g044110 | 49.329 | 298 | 140 | 6 | 6 | 297 | 204 | 496 | 1.83e-97 | 297 |
| MS.gene57615.t1 | MTR_3g036100 | 50.171 | 293 | 139 | 6 | 6 | 296 | 227 | 514 | 4.83e-97 | 296 |
| MS.gene57615.t1 | MTR_7g090920 | 47.315 | 298 | 146 | 5 | 6 | 297 | 219 | 511 | 3.82e-93 | 286 |
| MS.gene57615.t1 | MTR_1g015410 | 37.919 | 298 | 176 | 5 | 6 | 296 | 182 | 477 | 1.93e-71 | 229 |
| MS.gene57615.t1 | MTR_0005s0070 | 49.254 | 134 | 64 | 4 | 6 | 138 | 135 | 265 | 7.21e-37 | 133 |
| MS.gene57615.t1 | MTR_2g039360 | 42.105 | 76 | 43 | 1 | 237 | 311 | 76 | 151 | 3.10e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57615.t1 | AT5G56970 | 58.763 | 291 | 118 | 2 | 6 | 296 | 203 | 491 | 7.55e-128 | 375 |
| MS.gene57615.t1 | AT4G29740 | 51.877 | 293 | 135 | 3 | 6 | 296 | 209 | 497 | 1.25e-108 | 326 |
| MS.gene57615.t1 | AT1G75450 | 51.515 | 297 | 135 | 4 | 6 | 296 | 201 | 494 | 9.38e-108 | 324 |
| MS.gene57615.t1 | AT1G75450 | 51.689 | 296 | 134 | 4 | 7 | 296 | 199 | 491 | 1.43e-107 | 323 |
| MS.gene57615.t1 | AT2G19500 | 51.186 | 295 | 137 | 3 | 6 | 297 | 186 | 476 | 9.52e-107 | 320 |
| MS.gene57615.t1 | AT2G41510 | 47.475 | 297 | 145 | 5 | 6 | 296 | 222 | 513 | 1.91e-94 | 291 |
| MS.gene57615.t1 | AT2G41510 | 47.475 | 297 | 145 | 5 | 6 | 296 | 284 | 575 | 4.98e-94 | 291 |
| MS.gene57615.t1 | AT3G63440 | 44.781 | 297 | 154 | 4 | 6 | 296 | 208 | 500 | 1.25e-90 | 280 |
| MS.gene57615.t1 | AT5G56970 | 56.502 | 223 | 95 | 2 | 6 | 228 | 203 | 423 | 3.30e-89 | 273 |
| MS.gene57615.t1 | AT4G29740 | 53.125 | 224 | 100 | 2 | 6 | 228 | 209 | 428 | 9.74e-80 | 249 |
| MS.gene57615.t1 | AT5G21482 | 41.137 | 299 | 166 | 6 | 6 | 296 | 198 | 494 | 2.24e-76 | 243 |
| MS.gene57615.t1 | AT2G41510 | 49.107 | 224 | 108 | 4 | 6 | 228 | 222 | 440 | 7.05e-70 | 224 |
| MS.gene57615.t1 | AT4G29740 | 55.224 | 134 | 55 | 2 | 6 | 138 | 209 | 338 | 1.05e-43 | 154 |
Find 62 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCAATATTTGAGATTT+TGG | 0.091010 | 8.3:-4415743 | None:intergenic |
| ACTCAAGTGGATTTGATAAT+TGG | 0.142815 | 8.3:+4416059 | MS.gene57615:CDS |
| AGAGGATCTCCAATTATTTA+TGG | 0.156095 | 8.3:-4415092 | None:intergenic |
| GTTATTAAAGAAGCTATTCT+AGG | 0.268705 | 8.3:-4415139 | None:intergenic |
| CTTGGAGGTTTAGGACAATT+TGG | 0.270154 | 8.3:+4413588 | MS.gene57615:CDS |
| CATACCAAAATCTCAAATAT+TGG | 0.281178 | 8.3:+4415739 | MS.gene57615:CDS |
| GATTAACCGTTCCTGATCTT+TGG | 0.286822 | 8.3:-4415011 | None:intergenic |
| CGAATGGGTATGTTTGATTC+AGG | 0.289544 | 8.3:+4413507 | None:intergenic |
| GCACTAATGGAAGAGTTTCT+TGG | 0.306529 | 8.3:+4416197 | MS.gene57615:CDS |
| CACGCGGTTCTTGGAGGTTT+AGG | 0.307047 | 8.3:+4413579 | MS.gene57615:CDS |
| TGATCATCAATCCGAGAAAA+TGG | 0.314927 | 8.3:+4415204 | MS.gene57615:CDS |
| AACAAGGCTCCATAAATAAT+TGG | 0.334966 | 8.3:+4415083 | MS.gene57615:CDS |
| GAGTTATATCACGCGGTTCT+TGG | 0.336072 | 8.3:+4413570 | MS.gene57615:CDS |
| TGGACTTCATTATGAGAAAA+AGG | 0.342313 | 8.3:+4415619 | MS.gene57615:CDS |
| ATAATGAAGTCCAGGGATAT+AGG | 0.369857 | 8.3:-4415609 | None:intergenic |
| GGTATGTTTGATTCAGGAAA+AGG | 0.408011 | 8.3:+4413513 | MS.gene57615:CDS |
| TCTTCTTGTGTGCTGTGGTT+AGG | 0.411365 | 8.3:-4416157 | None:intergenic |
| TAATGAAGTCCAGGGATATA+GGG | 0.423598 | 8.3:-4415608 | None:intergenic |
| GCAGTAGATAATGCTGTGTT+TGG | 0.425996 | 8.3:-4415161 | None:intergenic |
| CATAATATGTAGCAAATTCA+AGG | 0.448202 | 8.3:-4415183 | None:intergenic |
| CAGTATAACCGTACCGTTGT+GGG | 0.463521 | 8.3:-4413648 | None:intergenic |
| ACCACAGCACACAAGAAGAT+TGG | 0.465569 | 8.3:+4416161 | MS.gene57615:CDS |
| AACCGTACCGTTGTGGGAGC+TGG | 0.467417 | 8.3:-4413642 | None:intergenic |
| TCCAATCTTCTTGTGTGCTG+TGG | 0.478791 | 8.3:-4416162 | None:intergenic |
| CATCACCAGTGGAACTGTCT+TGG | 0.486622 | 8.3:+4415805 | MS.gene57615:CDS |
| GAACGGTTAATCTCAATCAA+TGG | 0.491339 | 8.3:+4415022 | MS.gene57615:CDS |
| TCCAGGTGATAAAATCATCC+TGG | 0.493495 | 8.3:-4416241 | None:intergenic |
| TTCTAGGATGGTCAGATTGA+GGG | 0.495813 | 8.3:-4415123 | None:intergenic |
| AGCTTCAGTCACAAGGATTG+TGG | 0.497703 | 8.3:+4415687 | MS.gene57615:CDS |
| GAGGATGTCTTCTACACAGT+TGG | 0.497926 | 8.3:+4416028 | MS.gene57615:CDS |
| GGTATGAATAAATTAAGCCA+TGG | 0.512499 | 8.3:-4415722 | None:intergenic |
| GCTTCAGTCACAAGGATTGT+GGG | 0.515662 | 8.3:+4415688 | MS.gene57615:CDS |
| ATTCTAGGATGGTCAGATTG+AGG | 0.517004 | 8.3:-4415124 | None:intergenic |
| TGTGGGAAGTTCCTCACCCA+TGG | 0.522276 | 8.3:+4415705 | MS.gene57615:CDS |
| TGGCATGTATACAGGTTAAG+TGG | 0.526926 | 8.3:+4414954 | MS.gene57615:intron |
| TTAAATCCAGGTGGGACGAT+AGG | 0.539047 | 8.3:+4415984 | MS.gene57615:intron |
| GTTGGATTCTTACACTCAAG+TGG | 0.539696 | 8.3:+4416046 | MS.gene57615:CDS |
| GTGTAGAAGACATCCTCGTT+TGG | 0.543503 | 8.3:-4416022 | None:intergenic |
| TTATATCACGCGGTTCTTGG+AGG | 0.553109 | 8.3:+4413573 | MS.gene57615:CDS |
| GGTTAATCTCAATCAATGGA+AGG | 0.556622 | 8.3:+4415026 | MS.gene57615:CDS |
| GACAATTTGGAGTTATAACA+AGG | 0.558388 | 8.3:+4413601 | MS.gene57615:CDS |
| TTAAAGAAGCTATTCTAGGA+TGG | 0.561768 | 8.3:-4415135 | None:intergenic |
| GTATGAATAAATTAAGCCAT+GGG | 0.562092 | 8.3:-4415721 | None:intergenic |
| CCAGGTGATAAAATCATCCT+GGG | 0.575746 | 8.3:-4416240 | None:intergenic |
| GTTAATCTCAATCAATGGAA+GGG | 0.578188 | 8.3:+4415027 | MS.gene57615:CDS |
| CAAGGACTACCCTATATCCC+TGG | 0.582457 | 8.3:+4415599 | MS.gene57615:CDS |
| AGATTGAGGGAAGAAATTAG+AGG | 0.583674 | 8.3:-4415110 | None:intergenic |
| GAGTTGAAGCTTCAGTCACA+AGG | 0.583991 | 8.3:+4415680 | MS.gene57615:CDS |
| ACAAGCACAAGTTTGATCCC+AGG | 0.598194 | 8.3:+4416223 | MS.gene57615:CDS |
| AATAAATTAAGCCATGGGTG+AGG | 0.606021 | 8.3:-4415716 | None:intergenic |
| GTAAACCAAGACAGTTCCAC+TGG | 0.612320 | 8.3:-4415810 | None:intergenic |
| TTCTTGAATAGAGTCCGAAG+TGG | 0.613739 | 8.3:+4415656 | MS.gene57615:CDS |
| TCAGTATAACCGTACCGTTG+TGG | 0.626101 | 8.3:-4413649 | None:intergenic |
| ATCCGAGAAAATGGTGGACA+AGG | 0.628901 | 8.3:+4415213 | MS.gene57615:CDS |
| ATTAAAAGAAACATCACCAG+TGG | 0.637357 | 8.3:+4415794 | MS.gene57615:CDS |
| GAAGCTTCAACTCTCCACTT+CGG | 0.640974 | 8.3:-4415670 | None:intergenic |
| ACAATTTGGAGTTATAACAA+GGG | 0.641357 | 8.3:+4413602 | MS.gene57615:CDS |
| TCATCAATCCGAGAAAATGG+TGG | 0.643829 | 8.3:+4415207 | MS.gene57615:CDS |
| GGGATGCTGCTAATGCAACA+AGG | 0.647362 | 8.3:+4415067 | MS.gene57615:CDS |
| GAATTCAGAGTTATATCACG+CGG | 0.664876 | 8.3:+4413563 | MS.gene57615:CDS |
| TCTTCAGCCAGCTCCCACAA+CGG | 0.665337 | 8.3:+4413635 | MS.gene57615:CDS |
| GTCAGCAATGATACCAAACG+AGG | 0.778680 | 8.3:+4416009 | MS.gene57615:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATATTTTATCTTC+TGG | - | chr8.3:4415470-4415489 | None:intergenic | 10.0% |
| !!! | TAAAGTTTAATTTTATCATT+GGG | + | chr8.3:4415399-4415418 | MS.gene57615:intron | 10.0% |
| !! | ATATTCACAAATGAATATAT+AGG | + | chr8.3:4414139-4414158 | MS.gene57615:intron | 15.0% |
| !! | CAATGATAAAATTAAACTTT+AGG | - | chr8.3:4415400-4415419 | None:intergenic | 15.0% |
| !! | GTATACATAATTAAACAATA+CGG | - | chr8.3:4414884-4414903 | None:intergenic | 15.0% |
| !! | TATACTTTAGTTAAAAAGTA+TGG | - | chr8.3:4413835-4413854 | None:intergenic | 15.0% |
| !!! | AACTATTATCTTTTTCAATT+AGG | - | chr8.3:4415270-4415289 | None:intergenic | 15.0% |
| !!! | AATCTTGTATTCTTTTTTTT+TGG | + | chr8.3:4414730-4414749 | MS.gene57615:intron | 15.0% |
| !!! | AATTACAATATTTTATCTCT+TGG | - | chr8.3:4415500-4415519 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTAATTTTATCAT+TGG | + | chr8.3:4415398-4415417 | MS.gene57615:intron | 15.0% |
| !!! | GTGATTTTTGAATATTTATA+TGG | - | chr8.3:4414692-4414711 | None:intergenic | 15.0% |
| !!! | TTAAAATTAGTCATCTTTTT+AGG | + | chr8.3:4414461-4414480 | MS.gene57615:intron | 15.0% |
| !! | AATATGTCAAATACATCTAA+AGG | + | chr8.3:4414272-4414291 | MS.gene57615:intron | 20.0% |
| !! | ATTAAAGAAAATCCAATAGA+CGG | - | chr8.3:4415241-4415260 | None:intergenic | 20.0% |
| !! | ATTACATGAAATTTAAATCC+AGG | + | chr8.3:4415972-4415991 | MS.gene57615:intron | 20.0% |
| !! | CAATAACAATTAAGAAAAGA+AGG | + | chr8.3:4415933-4415952 | MS.gene57615:intron | 20.0% |
| !! | GATAAATCATAATATATGCA+TGG | - | chr8.3:4414781-4414800 | None:intergenic | 20.0% |
| !! | TTAGTATAAGACATTAGTAA+TGG | + | chr8.3:4414920-4414939 | MS.gene57615:intron | 20.0% |
| !!! | AAAAACTAAAATGACTTGTT+TGG | - | chr8.3:4414347-4414366 | None:intergenic | 20.0% |
| !!! | AAAAGATGACTAATTTTAAG+TGG | - | chr8.3:4414460-4414479 | None:intergenic | 20.0% |
| !!! | AAAGATGACTAATTTTAAGT+GGG | - | chr8.3:4414459-4414478 | None:intergenic | 20.0% |
| !!! | AAATCCAATATTTGAGATTT+TGG | - | chr8.3:4415746-4415765 | None:intergenic | 20.0% |
| !!! | ATCTTGTATTCTAATTTTGA+CGG | + | chr8.3:4414829-4414848 | MS.gene57615:intron | 20.0% |
| !!! | CAAATATTGGATTTTAATTC+AGG | + | chr8.3:4415752-4415771 | MS.gene57615:CDS | 20.0% |
| !!! | TTCTTTTTCTTTGTTTATGT+AGG | + | chr8.3:4415559-4415578 | MS.gene57615:intron | 20.0% |
| ! | ACTAGTATTGTTAACATTCT+TGG | + | chr8.3:4414058-4414077 | MS.gene57615:intron | 25.0% |
| ! | CATAATATGTAGCAAATTCA+AGG | - | chr8.3:4415186-4415205 | None:intergenic | 25.0% |
| ! | CATACCAAAATCTCAAATAT+TGG | + | chr8.3:4415739-4415758 | MS.gene57615:CDS | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | + | chr8.3:4414559-4414578 | MS.gene57615:intron | 25.0% |
| ! | GAAACTTAAAGGACTTATTT+GGG | + | chr8.3:4414599-4414618 | MS.gene57615:intron | 25.0% |
| ! | GTATGAATAAATTAAGCCAT+GGG | - | chr8.3:4415724-4415743 | None:intergenic | 25.0% |
| ! | GTTATTAAAGAAGCTATTCT+AGG | - | chr8.3:4415142-4415161 | None:intergenic | 25.0% |
| ! | TATATATATGATCGACAACT+AGG | - | chr8.3:4413739-4413758 | None:intergenic | 25.0% |
| ! | TGAAACTTAAAGGACTTATT+TGG | + | chr8.3:4414598-4414617 | MS.gene57615:intron | 25.0% |
| ! | TTAACAATACTAGTAGATTG+TGG | - | chr8.3:4414052-4414071 | None:intergenic | 25.0% |
| !! | ACAATTTGGAGTTATAACAA+GGG | + | chr8.3:4413602-4413621 | MS.gene57615:CDS | 25.0% |
| !! | ACATTAGTAATGGTGAATTT+TGG | + | chr8.3:4414930-4414949 | MS.gene57615:intron | 25.0% |
| !! | GAAGATTGGAAAAAACATTT+TGG | + | chr8.3:4416175-4416194 | MS.gene57615:CDS | 25.0% |
| !!! | AAAAAACATTTTGGCACTAA+TGG | + | chr8.3:4416184-4416203 | MS.gene57615:CDS | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr8.3:4413776-4413795 | None:intergenic | 25.0% |
| !!! | CTTACTTTGTTTTATTCATG+GGG | - | chr8.3:4415835-4415854 | None:intergenic | 25.0% |
| !!! | CTTGTATTCTTTTTTTTTGG+TGG | + | chr8.3:4414733-4414752 | MS.gene57615:intron | 25.0% |
| !!! | GCTTACTTTGTTTTATTCAT+GGG | - | chr8.3:4415836-4415855 | None:intergenic | 25.0% |
| !!! | TTGAGACTTTTGAAACTTAA+AGG | + | chr8.3:4414588-4414607 | MS.gene57615:intron | 25.0% |
| !!! | TTTTAATTCAGGTGTATTCA+AGG | + | chr8.3:4415763-4415782 | MS.gene57615:CDS | 25.0% |
| AACAAGGCTCCATAAATAAT+TGG | + | chr8.3:4415083-4415102 | MS.gene57615:CDS | 30.0% | |
| ACATGAAATTTAAATCCAGG+TGG | + | chr8.3:4415975-4415994 | MS.gene57615:intron | 30.0% | |
| AGAGGATCTCCAATTATTTA+TGG | - | chr8.3:4415095-4415114 | None:intergenic | 30.0% | |
| ATAGTATGAATCGTTGAATG+TGG | + | chr8.3:4414216-4414235 | MS.gene57615:intron | 30.0% | |
| ATATGGTCAAATGCATCTAA+AGG | - | chr8.3:4414675-4414694 | None:intergenic | 30.0% | |
| ATTAAAAGAAACATCACCAG+TGG | + | chr8.3:4415794-4415813 | MS.gene57615:CDS | 30.0% | |
| CAAAGTATATGGCATTTCAA+AGG | - | chr8.3:4415858-4415877 | None:intergenic | 30.0% | |
| CATGAAATTTAAATCCAGGT+GGG | + | chr8.3:4415976-4415995 | MS.gene57615:intron | 30.0% | |
| CCAACTATGCTATCTATAAT+AGG | - | chr8.3:4414388-4414407 | None:intergenic | 30.0% | |
| CCTATTATAGATAGCATAGT+TGG | + | chr8.3:4414385-4414404 | MS.gene57615:intron | 30.0% | |
| GAAACTTAAATGACCACTTT+GGG | + | chr8.3:4414628-4414647 | MS.gene57615:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | chr8.3:4414648-4414667 | MS.gene57615:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | - | chr8.3:4414667-4414648 | None:intergenic | 30.0% | |
| GGTATGAATAAATTAAGCCA+TGG | - | chr8.3:4415725-4415744 | None:intergenic | 30.0% | |
| GTTAATCTCAATCAATGGAA+GGG | + | chr8.3:4415027-4415046 | MS.gene57615:CDS | 30.0% | |
| TAGTCAAGATTAAACGTCTA+GGG | - | chr8.3:4415441-4415460 | None:intergenic | 30.0% | |
| TCATGATGACTCAAAGTATA+TGG | - | chr8.3:4415869-4415888 | None:intergenic | 30.0% | |
| TGAAACTTAAATGACCACTT+TGG | + | chr8.3:4414627-4414646 | MS.gene57615:intron | 30.0% | |
| TGGACTTCATTATGAGAAAA+AGG | + | chr8.3:4415619-4415638 | MS.gene57615:CDS | 30.0% | |
| TTGTGAATATAAGCCTTTCA+CGG | - | chr8.3:4414129-4414148 | None:intergenic | 30.0% | |
| ! | ACTCAAGTGGATTTGATAAT+TGG | + | chr8.3:4416059-4416078 | MS.gene57615:CDS | 30.0% |
| ! | GAAATTGACATTTTGCTTCA+AGG | + | chr8.3:4415581-4415600 | MS.gene57615:CDS | 30.0% |
| ! | GACAATTTGGAGTTATAACA+AGG | + | chr8.3:4413601-4413620 | MS.gene57615:CDS | 30.0% |
| ! | TTAAAGAAGCTATTCTAGGA+TGG | - | chr8.3:4415138-4415157 | None:intergenic | 30.0% |
| ! | TTTCAAACAAGTCCTTTTAG+AGG | - | chr8.3:4414543-4414562 | None:intergenic | 30.0% |
| ! | TTTTCTCATAATGAAGTCCA+GGG | - | chr8.3:4415619-4415638 | None:intergenic | 30.0% |
| ! | TTTTTCTCATAATGAAGTCC+AGG | - | chr8.3:4415620-4415639 | None:intergenic | 30.0% |
| !! | ACTAATTTTAAGTGGGTGTT+AGG | - | chr8.3:4414452-4414471 | None:intergenic | 30.0% |
| !! | ATTAGTCATCTTTTTAGGCA+TGG | + | chr8.3:4414466-4414485 | MS.gene57615:intron | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr8.3:4413997-4414016 | MS.gene57615:intron | 30.0% |
| !! | GTTTGGACTTTGAAACTTAA+AGG | - | chr8.3:4414330-4414349 | None:intergenic | 30.0% |
| !! | TAGTAATGGTGAATTTTGGT+TGG | + | chr8.3:4414934-4414953 | MS.gene57615:intron | 30.0% |
| !!! | AGCAATAACTTTTTGCTGTT+AGG | + | chr8.3:4415374-4415393 | MS.gene57615:intron | 30.0% |
| !!! | GGCTTACTTTGTTTTATTCA+TGG | - | chr8.3:4415837-4415856 | None:intergenic | 30.0% |
| AATAAATTAAGCCATGGGTG+AGG | - | chr8.3:4415719-4415738 | None:intergenic | 35.0% | |
| ACAGTGCACATTGCAAAAAT+TGG | - | chr8.3:4413794-4413813 | None:intergenic | 35.0% | |
| AGATTGAGGGAAGAAATTAG+AGG | - | chr8.3:4415113-4415132 | None:intergenic | 35.0% | |
| ATAATGAAGTCCAGGGATAT+AGG | - | chr8.3:4415612-4415631 | None:intergenic | 35.0% | |
| ATACTAGTAGATTGTGGACA+AGG | - | chr8.3:4414046-4414065 | None:intergenic | 35.0% | |
| CATAATATATGCATGGTCCA+GGG | - | chr8.3:4414774-4414793 | None:intergenic | 35.0% | |
| CATATGTGAAGTGATTGACT+TGG | + | chr8.3:4413979-4413998 | MS.gene57615:intron | 35.0% | |
| CATCATCATCATCCTCTAAA+AGG | + | chr8.3:4414528-4414547 | MS.gene57615:intron | 35.0% | |
| CTAGTCAAGATTAAACGTCT+AGG | - | chr8.3:4415442-4415461 | None:intergenic | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | - | chr8.3:4414319-4414338 | None:intergenic | 35.0% | |
| GAACGGTTAATCTCAATCAA+TGG | + | chr8.3:4415022-4415041 | MS.gene57615:CDS | 35.0% | |
| GAATTCAGAGTTATATCACG+CGG | + | chr8.3:4413563-4413582 | MS.gene57615:CDS | 35.0% | |
| GGTATGTTTGATTCAGGAAA+AGG | + | chr8.3:4413513-4413532 | MS.gene57615:CDS | 35.0% | |
| GGTTAATCTCAATCAATGGA+AGG | + | chr8.3:4415026-4415045 | MS.gene57615:CDS | 35.0% | |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr8.3:4413956-4413975 | MS.gene57615:intron | 35.0% | |
| TAATGAAGTCCAGGGATATA+GGG | - | chr8.3:4415611-4415630 | None:intergenic | 35.0% | |
| TACCAAGTGAGTTAAGATCA+CGG | + | chr8.3:4414803-4414822 | MS.gene57615:intron | 35.0% | |
| TCATAATATATGCATGGTCC+AGG | - | chr8.3:4414775-4414794 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | - | chr8.3:4414320-4414339 | None:intergenic | 35.0% | |
| TGATCATCAATCCGAGAAAA+TGG | + | chr8.3:4415204-4415223 | MS.gene57615:CDS | 35.0% | |
| TGATCTTAACTCACTTGGTA+AGG | - | chr8.3:4414803-4414822 | None:intergenic | 35.0% | |
| ! | AGGGAATTGAACTTTTTGGA+AGG | + | chr8.3:4415046-4415065 | MS.gene57615:CDS | 35.0% |
| ! | CTTTTACCAAAGATCAGGAA+CGG | + | chr8.3:4415005-4415024 | MS.gene57615:CDS | 35.0% |
| ! | TGGAAGGGAATTGAACTTTT+TGG | + | chr8.3:4415042-4415061 | MS.gene57615:CDS | 35.0% |
| !! | ATCTTTTTAGGCATGGCAAA+TGG | + | chr8.3:4414473-4414492 | MS.gene57615:intron | 35.0% |
| !! | GGGAATTGAACTTTTTGGAA+GGG | + | chr8.3:4415047-4415066 | MS.gene57615:CDS | 35.0% |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | + | chr8.3:4414303-4414322 | MS.gene57615:intron | 35.0% |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | - | chr8.3:4414322-4414303 | None:intergenic | 35.0% |
| !! | TAGATTTGGTGTACGTTTGT+TGG | - | chr8.3:4413716-4413735 | None:intergenic | 35.0% |
| !! | TTCTGCTTTTACCAAAGATC+AGG | + | chr8.3:4415000-4415019 | MS.gene57615:CDS | 35.0% |
| !! | TTGAAGTTTTGTAGTGATGC+TGG | + | chr8.3:4416112-4416131 | MS.gene57615:CDS | 35.0% |
| !!! | ATTTTGGTTGGCATGTATAC+AGG | + | chr8.3:4414946-4414965 | MS.gene57615:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr8.3:4414020-4414001 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTGGTGGTGTCCA+AGG | + | chr8.3:4414742-4414761 | MS.gene57615:intron | 35.0% |
| ACCAAGTGAGTTAAGATCAC+GGG | + | chr8.3:4414804-4414823 | MS.gene57615:intron | 40.0% | |
| GATCGACAACTAGGTAGATT+TGG | - | chr8.3:4413730-4413749 | None:intergenic | 40.0% | |
| GATTAACCGTTCCTGATCTT+TGG | - | chr8.3:4415014-4415033 | None:intergenic | 40.0% | |
| GCACTAATGGAAGAGTTTCT+TGG | + | chr8.3:4416197-4416216 | MS.gene57615:CDS | 40.0% | |
| GCAGTAGATAATGCTGTGTT+TGG | - | chr8.3:4415164-4415183 | None:intergenic | 40.0% | |
| GTCATCTTTGGTACCAAATC+TGG | + | chr8.3:4414424-4414443 | MS.gene57615:intron | 40.0% | |
| GTTGGATTCTTACACTCAAG+TGG | + | chr8.3:4416046-4416065 | MS.gene57615:CDS | 40.0% | |
| TCATCAATCCGAGAAAATGG+TGG | + | chr8.3:4415207-4415226 | MS.gene57615:CDS | 40.0% | |
| TGCTTCCTTGAAGTCATCTT+TGG | + | chr8.3:4414412-4414431 | MS.gene57615:intron | 40.0% | |
| TGGCATGTATACAGGTTAAG+TGG | + | chr8.3:4414954-4414973 | MS.gene57615:intron | 40.0% | |
| TGGTACCAAAGATGACTTCA+AGG | - | chr8.3:4414420-4414439 | None:intergenic | 40.0% | |
| TTCCATTAGTCATCCGTGAA+AGG | + | chr8.3:4414113-4414132 | MS.gene57615:intron | 40.0% | |
| TTCTTGAATAGAGTCCGAAG+TGG | + | chr8.3:4415656-4415675 | MS.gene57615:CDS | 40.0% | |
| ! | CTTGGAGGTTTAGGACAATT+TGG | + | chr8.3:4413588-4413607 | MS.gene57615:CDS | 40.0% |
| ! | TACCTTGTCCACCATTTTCT+CGG | - | chr8.3:4415218-4415237 | None:intergenic | 40.0% |
| !! | ATTCTAGGATGGTCAGATTG+AGG | - | chr8.3:4415127-4415146 | None:intergenic | 40.0% |
| !! | TTCTAGGATGGTCAGATTGA+GGG | - | chr8.3:4415126-4415145 | None:intergenic | 40.0% |
| !! | TTTTTAGGCATGGCAAATGG+TGG | + | chr8.3:4414476-4414495 | MS.gene57615:intron | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr8.3:4414000-4414019 | MS.gene57615:intron | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr8.3:4414019-4414000 | None:intergenic | 40.0% |
| ACAAGCACAAGTTTGATCCC+AGG | + | chr8.3:4416223-4416242 | MS.gene57615:CDS | 45.0% | |
| ACCACAGCACACAAGAAGAT+TGG | + | chr8.3:4416161-4416180 | MS.gene57615:CDS | 45.0% | |
| AGCCTTTCACGGATGACTAA+TGG | - | chr8.3:4414118-4414137 | None:intergenic | 45.0% | |
| AGCTTCAGTCACAAGGATTG+TGG | + | chr8.3:4415687-4415706 | MS.gene57615:CDS | 45.0% | |
| CAAGTGAGTTAAGATCACGG+GGG | + | chr8.3:4414806-4414825 | MS.gene57615:intron | 45.0% | |
| CAGTATAACCGTACCGTTGT+GGG | - | chr8.3:4413651-4413670 | None:intergenic | 45.0% | |
| CCAAGTGAGTTAAGATCACG+GGG | + | chr8.3:4414805-4414824 | MS.gene57615:intron | 45.0% | |
| GAAGCTTCAACTCTCCACTT+CGG | - | chr8.3:4415673-4415692 | None:intergenic | 45.0% | |
| GAGGATGTCTTCTACACAGT+TGG | + | chr8.3:4416028-4416047 | MS.gene57615:CDS | 45.0% | |
| GAGTTATATCACGCGGTTCT+TGG | + | chr8.3:4413570-4413589 | MS.gene57615:CDS | 45.0% | |
| GAGTTGAAGCTTCAGTCACA+AGG | + | chr8.3:4415680-4415699 | MS.gene57615:CDS | 45.0% | |
| GCTTCAGTCACAAGGATTGT+GGG | + | chr8.3:4415688-4415707 | MS.gene57615:CDS | 45.0% | |
| GTAAACCAAGACAGTTCCAC+TGG | - | chr8.3:4415813-4415832 | None:intergenic | 45.0% | |
| GTCAGCAATGATACCAAACG+AGG | + | chr8.3:4416009-4416028 | MS.gene57615:CDS | 45.0% | |
| GTGTAGAAGACATCCTCGTT+TGG | - | chr8.3:4416025-4416044 | None:intergenic | 45.0% | |
| TCAGTATAACCGTACCGTTG+TGG | - | chr8.3:4413652-4413671 | None:intergenic | 45.0% | |
| TCCAATCTTCTTGTGTGCTG+TGG | - | chr8.3:4416165-4416184 | None:intergenic | 45.0% | |
| TCTTCTTGTGTGCTGTGGTT+AGG | - | chr8.3:4416160-4416179 | None:intergenic | 45.0% | |
| TTAAATCCAGGTGGGACGAT+AGG | + | chr8.3:4415984-4416003 | MS.gene57615:intron | 45.0% | |
| TTATATCACGCGGTTCTTGG+AGG | + | chr8.3:4413573-4413592 | MS.gene57615:CDS | 45.0% | |
| !! | ATCCGAGAAAATGGTGGACA+AGG | + | chr8.3:4415213-4415232 | MS.gene57615:CDS | 45.0% |
| !! | TATATAATTAAAGATATTAA+CGG | + | chr8.3:4413939-4413958 | MS.gene57615:intron | 5.0% |
| ATGGTCCAGGGTTCAAACCT+TGG | - | chr8.3:4414762-4414781 | None:intergenic | 50.0% | |
| CAAGGACTACCCTATATCCC+TGG | + | chr8.3:4415599-4415618 | MS.gene57615:CDS | 50.0% | |
| CATCACCAGTGGAACTGTCT+TGG | + | chr8.3:4415805-4415824 | MS.gene57615:CDS | 50.0% | |
| CCCCGTGATCTTAACTCACT+TGG | - | chr8.3:4414808-4414827 | None:intergenic | 50.0% | |
| GGGATGCTGCTAATGCAACA+AGG | + | chr8.3:4415067-4415086 | MS.gene57615:CDS | 50.0% | |
| TGGGTGTTAGGAGCCAGATT+TGG | - | chr8.3:4414440-4414459 | None:intergenic | 50.0% | |
| !! | GTGGACAAGGTACCGTCTAT+TGG | + | chr8.3:4415226-4415245 | MS.gene57615:intron | 50.0% |
| CACGCGGTTCTTGGAGGTTT+AGG | + | chr8.3:4413579-4413598 | MS.gene57615:CDS | 55.0% | |
| GGTGTCCAAGGTTTGAACCC+TGG | + | chr8.3:4414754-4414773 | MS.gene57615:intron | 55.0% | |
| TCTTCAGCCAGCTCCCACAA+CGG | + | chr8.3:4413635-4413654 | MS.gene57615:CDS | 55.0% | |
| TGACATCCTATCGTCCCACC+TGG | - | chr8.3:4415993-4416012 | None:intergenic | 55.0% | |
| TGTGGGAAGTTCCTCACCCA+TGG | + | chr8.3:4415705-4415724 | MS.gene57615:CDS | 55.0% | |
| AACCGTACCGTTGTGGGAGC+TGG | - | chr8.3:4413645-4413664 | None:intergenic | 60.0% | |
| AGCCAGCTCCCACAACGGTA+CGG | + | chr8.3:4413640-4413659 | MS.gene57615:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 4413510 | 4416249 | 4413510 | ID=MS.gene57615 |
| chr8.3 | mRNA | 4413510 | 4416249 | 4413510 | ID=MS.gene57615.t1;Parent=MS.gene57615 |
| chr8.3 | exon | 4413510 | 4413656 | 4413510 | ID=MS.gene57615.t1.exon1;Parent=MS.gene57615.t1 |
| chr8.3 | CDS | 4413510 | 4413656 | 4413510 | ID=cds.MS.gene57615.t1;Parent=MS.gene57615.t1 |
| chr8.3 | exon | 4414968 | 4415234 | 4414968 | ID=MS.gene57615.t1.exon2;Parent=MS.gene57615.t1 |
| chr8.3 | CDS | 4414968 | 4415234 | 4414968 | ID=cds.MS.gene57615.t1;Parent=MS.gene57615.t1 |
| chr8.3 | exon | 4415581 | 4415849 | 4415581 | ID=MS.gene57615.t1.exon3;Parent=MS.gene57615.t1 |
| chr8.3 | CDS | 4415581 | 4415849 | 4415581 | ID=cds.MS.gene57615.t1;Parent=MS.gene57615.t1 |
| chr8.3 | exon | 4415994 | 4416249 | 4415994 | ID=MS.gene57615.t1.exon4;Parent=MS.gene57615.t1 |
| chr8.3 | CDS | 4415994 | 4416249 | 4415994 | ID=cds.MS.gene57615.t1;Parent=MS.gene57615.t1 |
| Gene Sequence |
| Protein sequence |
