Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57662.t1 | PNY07487.1 | 69.8 | 630 | 61 | 2 | 1 | 502 | 145 | 773 | 8.80E-251 | 875.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57662.t1 | Q8L7W8 | 48.2 | 633 | 168 | 7 | 1 | 497 | 235 | 843 | 1.7e-162 | 573.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57662.t1 | A0A2K3NWR9 | 69.8 | 630 | 61 | 2 | 1 | 502 | 145 | 773 | 6.3e-251 | 875.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055277 | MS.gene57662 | 0.800291 | 1.54E-48 | -1.69E-46 |
| MS.gene056410 | MS.gene57662 | 0.807226 | 5.61E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57662.t1 | MTR_4g127370 | 94.444 | 252 | 14 | 0 | 1 | 252 | 201 | 452 | 2.44e-166 | 492 |
| MS.gene57662.t1 | MTR_4g127370 | 92.537 | 134 | 10 | 0 | 249 | 382 | 577 | 710 | 1.06e-79 | 266 |
| MS.gene57662.t1 | MTR_1g107135 | 88.492 | 252 | 28 | 1 | 250 | 501 | 651 | 901 | 8.22e-161 | 479 |
| MS.gene57662.t1 | MTR_1g107135 | 79.853 | 273 | 54 | 1 | 1 | 273 | 275 | 546 | 2.79e-146 | 442 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57662.t1 | AT4G34260 | 66.265 | 249 | 82 | 2 | 249 | 497 | 597 | 843 | 8.92e-115 | 358 |
| MS.gene57662.t1 | AT4G34260 | 53.846 | 260 | 90 | 4 | 1 | 252 | 235 | 472 | 4.50e-83 | 275 |
Find 111 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCTTCAAATGAATTAT+TGG | 0.184612 | 8.4:+7308968 | MS.gene57662:CDS |
| GTAGTCTCATTTCGGAATTC+TGG | 0.218207 | 8.4:-7310612 | None:intergenic |
| CTGCGCTGCCTCGGGATAAA+TGG | 0.224145 | 8.4:+7310488 | MS.gene57662:CDS |
| CATTTGTTTGGCTTGTTTCC+GGG | 0.239436 | 8.4:+7309746 | MS.gene57662:CDS |
| AAAAGGAGTTATACATGTTT+TGG | 0.239754 | 8.4:+7308231 | MS.gene57662:CDS |
| ACATTTGTTTGGCTTGTTTC+CGG | 0.260856 | 8.4:+7309745 | MS.gene57662:CDS |
| GCAGAAAACTGAATTCCTTT+TGG | 0.286309 | 8.4:-7308181 | None:intergenic |
| TGCTAGGGATGGATCAATTA+TGG | 0.289988 | 8.4:+7309516 | MS.gene57662:CDS |
| ACAGCTTCCTCGTCGTTTGA+TGG | 0.292756 | 8.4:+7308304 | MS.gene57662:CDS |
| ACCCAAAGTTCGCGTCAATT+TGG | 0.294452 | 8.4:-7310300 | None:intergenic |
| AAGTTTACTCGTATAATAAT+TGG | 0.298944 | 8.4:+7310677 | MS.gene57662:CDS |
| ACAAAGATGTTGTGCCTAAA+TGG | 0.300498 | 8.4:+7308719 | MS.gene57662:CDS |
| CGGCATGTTTCACATTTGTT+TGG | 0.319279 | 8.4:+7309734 | MS.gene57662:CDS |
| AGGTTTGCCACCTGAGTTCC+AGG | 0.326926 | 8.4:-7308682 | None:intergenic |
| ATGAAGCTCAGTAATGAAAA+AGG | 0.338778 | 8.4:+7308214 | MS.gene57662:CDS |
| TCCAAATTGACGCGAACTTT+GGG | 0.352849 | 8.4:+7310299 | MS.gene57662:CDS |
| TGGCAAACCTACAGGGTATA+TGG | 0.362855 | 8.4:+7308695 | MS.gene57662:CDS |
| TTCCAAATTGACGCGAACTT+TGG | 0.374868 | 8.4:+7310298 | MS.gene57662:CDS |
| TCTATAATGTAGTCTCATTT+CGG | 0.379763 | 8.4:-7310620 | None:intergenic |
| AACTTGGAAAGCTGCATTGT+GGG | 0.388241 | 8.4:+7310147 | MS.gene57662:CDS |
| AAACCAACAGCTTCCTGCTC+AGG | 0.402559 | 8.4:-7310232 | None:intergenic |
| ACTTACTTCCTGCGCTGCCT+CGG | 0.402607 | 8.4:+7310479 | MS.gene57662:CDS |
| ATTATACGAGTAAACTTTCC+CGG | 0.406105 | 8.4:-7310671 | None:intergenic |
| TGCGCTGCCTCGGGATAAAT+GGG | 0.419323 | 8.4:+7310489 | MS.gene57662:CDS |
| ATCTGCATGAAGTTGGCCTT+TGG | 0.420261 | 8.4:+7310581 | MS.gene57662:CDS |
| ACATGCCGATGATGTACATC+TGG | 0.430968 | 8.4:-7309719 | None:intergenic |
| GGGAAAACATACTCCCATTT+AGG | 0.432850 | 8.4:-7308733 | None:intergenic |
| ATTTCCTCTTTGTCAGTCAA+TGG | 0.448002 | 8.4:+7309042 | MS.gene57662:CDS |
| CAAAGATGTTGTGCCTAAAT+GGG | 0.448272 | 8.4:+7308720 | MS.gene57662:CDS |
| TAGAGTTGAAGGTTCAGATT+GGG | 0.452982 | 8.4:+7308267 | MS.gene57662:CDS |
| TCCACAGCTTTACAAAGATC+TGG | 0.454802 | 8.4:-7309794 | None:intergenic |
| AACTCAGGTGGCAAACCTAC+AGG | 0.457009 | 8.4:+7308687 | MS.gene57662:CDS |
| GTCCCGGGTGGTCAACAACT+TGG | 0.458789 | 8.4:+7310131 | MS.gene57662:CDS |
| TTGTTCACGTCCTGGAACTC+AGG | 0.465346 | 8.4:+7308672 | MS.gene57662:CDS |
| ACTCATGTAGGTTGCAAGAA+AGG | 0.468098 | 8.4:-7308996 | None:intergenic |
| CATTTATCCCGAGGCAGCGC+AGG | 0.470354 | 8.4:-7310487 | None:intergenic |
| TTTCTTAAGGACTCGGAAGT+AGG | 0.471772 | 8.4:-7308361 | None:intergenic |
| GGGTGACAGTCAACATCTGC+TGG | 0.473712 | 8.4:+7310548 | MS.gene57662:CDS |
| GGATGGATCAATTATGGAAT+GGG | 0.477988 | 8.4:+7309522 | MS.gene57662:CDS |
| ATAATGGAAGGAAGCTGTCC+TGG | 0.483329 | 8.4:+7308121 | None:intergenic |
| TGTCTTGGCGGACCCTGAGC+AGG | 0.485401 | 8.4:+7310219 | MS.gene57662:CDS |
| CTAATTGCTTGTTCACGTCC+TGG | 0.488943 | 8.4:+7308664 | MS.gene57662:CDS |
| CTATCAAAATCTATTTCATC+GGG | 0.490402 | 8.4:+7308441 | MS.gene57662:CDS |
| AAAACACTTGATTGTCTTGG+CGG | 0.491492 | 8.4:+7310207 | MS.gene57662:CDS |
| GAAATGAGACTACATTATAG+AGG | 0.493386 | 8.4:+7310622 | MS.gene57662:CDS |
| AAGGAAGCTGTCCTGGCAAA+AGG | 0.494436 | 8.4:+7308128 | MS.gene57662:CDS |
| TGGGCAAATGGTTGTGTGAA+AGG | 0.495474 | 8.4:+7310508 | MS.gene57662:CDS |
| GATAAGAAGCTTAGAGTTGA+AGG | 0.495802 | 8.4:+7308256 | MS.gene57662:CDS |
| CCTCGGGATAAATGGGCAAA+TGG | 0.496290 | 8.4:+7310496 | MS.gene57662:CDS |
| GTTACAGGAGATGAAGGTCC+CGG | 0.498255 | 8.4:+7310115 | MS.gene57662:intron |
| CATTATGTTACAGGAGATGA+AGG | 0.498282 | 8.4:+7310109 | MS.gene57662:intron |
| GTCAACATCTGCTGGAAAGA+AGG | 0.503287 | 8.4:+7310556 | MS.gene57662:CDS |
| TTAGGGATTCACTTCGCAAA+GGG | 0.503588 | 8.4:-7310722 | None:intergenic |
| ATGGAGGATGTGCTGTGAAC+AGG | 0.504751 | 8.4:-7310276 | None:intergenic |
| CTTACTTCCTGCGCTGCCTC+GGG | 0.508430 | 8.4:+7310480 | MS.gene57662:CDS |
| TCGTCACTTGAATTCACTTG+TGG | 0.511262 | 8.4:-7308157 | None:intergenic |
| GATAAAACACTTGATTGTCT+TGG | 0.511687 | 8.4:+7310204 | MS.gene57662:CDS |
| AAGGATTAAAAGCACGTGGC+GGG | 0.511813 | 8.4:+7310527 | MS.gene57662:CDS |
| ACTATCAAAATCTATTTCAT+CGG | 0.514434 | 8.4:+7308440 | MS.gene57662:CDS |
| ACTACCATTGACTGACAAAG+AGG | 0.515252 | 8.4:-7309046 | None:intergenic |
| CTCATGTAGGTTGCAAGAAA+GGG | 0.516829 | 8.4:-7308995 | None:intergenic |
| GATTTGATTCTCGATGAAGT+TGG | 0.518466 | 8.4:-7308580 | None:intergenic |
| ATTTGTTTGGCTTGTTTCCG+GGG | 0.520272 | 8.4:+7309747 | MS.gene57662:CDS |
| TTAGAGTTGAAGGTTCAGAT+TGG | 0.523034 | 8.4:+7308266 | MS.gene57662:CDS |
| GAGGAAATGTGATCAAATAG+TGG | 0.526093 | 8.4:-7309027 | None:intergenic |
| TCCAGATCTTTGTAAAGCTG+TGG | 0.528714 | 8.4:+7309793 | MS.gene57662:CDS |
| GACCCTGAGCAGGAAGCTGT+TGG | 0.531476 | 8.4:+7310229 | MS.gene57662:CDS |
| TCGATATTTATTGTGTGCCC+CGG | 0.534754 | 8.4:-7309764 | None:intergenic |
| TCACTTGAATTCACTTGTGG+AGG | 0.535640 | 8.4:-7308154 | None:intergenic |
| GGGATGGATCAATTATGGAA+TGG | 0.536443 | 8.4:+7309521 | MS.gene57662:CDS |
| GAAGGTGATCTGCATGAAGT+TGG | 0.538771 | 8.4:+7310574 | MS.gene57662:CDS |
| TGAAGATTTATGTTCAAGTG+TGG | 0.542997 | 8.4:-7308955 | None:intergenic |
| CTTTGTTCCATATACCCTGT+AGG | 0.553516 | 8.4:-7308702 | None:intergenic |
| AACCAACAGCTTCCTGCTCA+GGG | 0.561258 | 8.4:-7310231 | None:intergenic |
| AATTCAAGTGACGAACCAAA+AGG | 0.564022 | 8.4:+7308166 | MS.gene57662:CDS |
| GTCGTGGCAAATTTATCACC+CGG | 0.566689 | 8.4:+7310652 | MS.gene57662:CDS |
| GATTATAGTCTAATTAAAAG+AGG | 0.572479 | 8.4:+7309815 | MS.gene57662:CDS |
| AAGTTCGCGTCAATTTGGAA+TGG | 0.575095 | 8.4:-7310295 | None:intergenic |
| TTCGCGTCAATTTGGAATGG+AGG | 0.575642 | 8.4:-7310292 | None:intergenic |
| AACAAAAGCTCCACAACGGA+AGG | 0.576567 | 8.4:-7308622 | None:intergenic |
| CACTTGAATTCACTTGTGGA+GGG | 0.580247 | 8.4:-7308153 | None:intergenic |
| TTTCCAAGTTGTTGACCACC+CGG | 0.580247 | 8.4:-7310134 | None:intergenic |
| TGATGTTTATGCTCGTCACT+TGG | 0.581330 | 8.4:+7308414 | MS.gene57662:CDS |
| TTTAGGGATTCACTTCGCAA+AGG | 0.588564 | 8.4:-7310723 | None:intergenic |
| TTATACGAGTAAACTTTCCC+GGG | 0.592154 | 8.4:-7310670 | None:intergenic |
| CAATGGTAGTAAAACTGCAA+AGG | 0.610567 | 8.4:+7309059 | MS.gene57662:CDS |
| CAACTTGGAAAGCTGCATTG+TGG | 0.614081 | 8.4:+7310146 | MS.gene57662:CDS |
| TTACAGGAGATGAAGGTCCC+GGG | 0.615350 | 8.4:+7310116 | MS.gene57662:intron |
| TTATAGAGGGAACAAGGTCG+TGG | 0.620761 | 8.4:+7310636 | MS.gene57662:CDS |
| CATGCCGATGATGTACATCT+GGG | 0.627526 | 8.4:-7309718 | None:intergenic |
| TTCCAAGTTGTTGACCACCC+GGG | 0.628756 | 8.4:-7310133 | None:intergenic |
| TGATGAAGATCCTTCCGTTG+TGG | 0.632061 | 8.4:+7308612 | MS.gene57662:CDS |
| AAATGAGACTACATTATAGA+GGG | 0.633004 | 8.4:+7310623 | MS.gene57662:CDS |
| ACTCAGGTGGCAAACCTACA+GGG | 0.633425 | 8.4:+7308688 | MS.gene57662:CDS |
| AGGACCCAGATGTACATCAT+CGG | 0.638301 | 8.4:+7309714 | MS.gene57662:CDS |
| GTGGCTCTTGACACTCATGT+AGG | 0.641147 | 8.4:-7309008 | None:intergenic |
| TGTAGGTTGCAAGAAAGGGA+CGG | 0.643834 | 8.4:-7308991 | None:intergenic |
| ACTAACATATCTCAATTGAG+AGG | 0.644837 | 8.4:+7308544 | MS.gene57662:CDS |
| TTCACGTCCTGGAACTCAGG+TGG | 0.645681 | 8.4:+7308675 | MS.gene57662:CDS |
| AACATATCTCAATTGAGAGG+TGG | 0.647631 | 8.4:+7308547 | MS.gene57662:CDS |
| CCATTTGCCCATTTATCCCG+AGG | 0.650971 | 8.4:-7310496 | None:intergenic |
| TCGTGGCAAATTTATCACCC+GGG | 0.653543 | 8.4:+7310653 | MS.gene57662:CDS |
| AGGATTAAAAGCACGTGGCG+GGG | 0.657776 | 8.4:+7310528 | MS.gene57662:CDS |
| GCAGCGCAGGAAGTAAGTAG+AGG | 0.661819 | 8.4:-7310474 | None:intergenic |
| ACTACATTATAGAGGGAACA+AGG | 0.668510 | 8.4:+7310630 | MS.gene57662:CDS |
| GCTTGTTCAAAGCACAACGA+AGG | 0.677962 | 8.4:+7310450 | MS.gene57662:CDS |
| AAAGGATTAAAAGCACGTGG+CGG | 0.688457 | 8.4:+7310526 | MS.gene57662:CDS |
| TTGAAACAAAAGCTCCACAA+CGG | 0.707270 | 8.4:-7308626 | None:intergenic |
| GTGAAAGGATTAAAAGCACG+TGG | 0.709520 | 8.4:+7310523 | MS.gene57662:CDS |
| CAGGAGATGAAGGTCCCGGG+TGG | 0.726183 | 8.4:+7310119 | MS.gene57662:intron |
| AAATGGACCATCAAACGACG+AGG | 0.768244 | 8.4:-7308311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTGATAAATAAATATGTAAA+AGG | + | chr8.4:7308778-7308797 | MS.gene57662:intron | 15.0% |
| !! | TAAATCTTCAAATGAATTAT+TGG | + | chr8.4:7308968-7308987 | MS.gene57662:CDS | 15.0% |
| !! | AAGTTTACTCGTATAATAAT+TGG | + | chr8.4:7310677-7310696 | MS.gene57662:CDS | 20.0% |
| !! | ACATATTTATTTATCACTAG+AGG | - | chr8.4:7308775-7308794 | None:intergenic | 20.0% |
| !! | ACTATCAAAATCTATTTCAT+CGG | + | chr8.4:7308440-7308459 | MS.gene57662:CDS | 20.0% |
| !! | ATATTTATTTATCACTAGAG+GGG | - | chr8.4:7308773-7308792 | None:intergenic | 20.0% |
| !! | CATATTTATTTATCACTAGA+GGG | - | chr8.4:7308774-7308793 | None:intergenic | 20.0% |
| !! | GATTATAGTCTAATTAAAAG+AGG | + | chr8.4:7309815-7309834 | MS.gene57662:CDS | 20.0% |
| !! | TTATACTACATTCTCAAATT+AGG | + | chr8.4:7309979-7309998 | MS.gene57662:intron | 20.0% |
| !!! | AAAATTTTGGATTGTAAACT+AGG | + | chr8.4:7309640-7309659 | MS.gene57662:intron | 20.0% |
| !!! | AAATTTTGGATTGTAAACTA+GGG | + | chr8.4:7309641-7309660 | MS.gene57662:intron | 20.0% |
| !!! | ATAAGGTGTTAAATTTAACA+TGG | - | chr8.4:7309670-7309689 | None:intergenic | 20.0% |
| !!! | TAGTTATCCTAATTTTTTCT+TGG | + | chr8.4:7309402-7309421 | MS.gene57662:intron | 20.0% |
| ! | AAATGAGACTACATTATAGA+GGG | + | chr8.4:7310623-7310642 | MS.gene57662:CDS | 25.0% |
| ! | ACACAATTACATTTAATTGG+AGG | - | chr8.4:7309234-7309253 | None:intergenic | 25.0% |
| ! | ACTATATTCATTAAAACCTC+CGG | + | chr8.4:7309931-7309950 | MS.gene57662:intron | 25.0% |
| ! | CACACACAATTACATTTAAT+TGG | - | chr8.4:7309237-7309256 | None:intergenic | 25.0% |
| ! | CTATCAAAATCTATTTCATC+GGG | + | chr8.4:7308441-7308460 | MS.gene57662:CDS | 25.0% |
| ! | GATAAAAAAGATACAACCTT+AGG | - | chr8.4:7310044-7310063 | None:intergenic | 25.0% |
| ! | TATTTATTTATCACTAGAGG+GGG | - | chr8.4:7308772-7308791 | None:intergenic | 25.0% |
| ! | TCTATAATGTAGTCTCATTT+CGG | - | chr8.4:7310623-7310642 | None:intergenic | 25.0% |
| ! | TTAACATACACCTGATTAAT+AGG | - | chr8.4:7309192-7309211 | None:intergenic | 25.0% |
| ! | TTGACATTCTATGTTAGAAA+GGG | + | chr8.4:7309117-7309136 | MS.gene57662:intron | 25.0% |
| !! | AAAAGGAGTTATACATGTTT+TGG | + | chr8.4:7308231-7308250 | MS.gene57662:CDS | 25.0% |
| !! | AAAAGTTCAAAGACTGTTTT+AGG | + | chr8.4:7308481-7308500 | MS.gene57662:CDS | 25.0% |
| !! | AATTTTGGATTGTAAACTAG+GGG | + | chr8.4:7309642-7309661 | MS.gene57662:intron | 25.0% |
| !! | CTGATCTTCAATGAAAATTT+TGG | + | chr8.4:7309627-7309646 | MS.gene57662:intron | 25.0% |
| !! | TAACACCTTATTTATTTGAC+AGG | + | chr8.4:7309679-7309698 | MS.gene57662:intron | 25.0% |
| !!! | CACAAACTTCATTTTTCTTA+AGG | - | chr8.4:7308377-7308396 | None:intergenic | 25.0% |
| !!! | GTTTTAAATACAAGAAGGAT+AGG | + | chr8.4:7309256-7309275 | MS.gene57662:intron | 25.0% |
| !!! | TAGAAACTAGTTTCTAGTAT+TGG | - | chr8.4:7309384-7309403 | None:intergenic | 25.0% |
| !!! | TGTGTGTTTTAAATACAAGA+AGG | + | chr8.4:7309251-7309270 | MS.gene57662:intron | 25.0% |
| !!! | TGTTTTAGGAAAACCTATTT+TGG | + | chr8.4:7308495-7308514 | MS.gene57662:CDS | 25.0% |
| ACTAACATATCTCAATTGAG+AGG | + | chr8.4:7308544-7308563 | MS.gene57662:CDS | 30.0% | |
| ATACAAGAAGGATAGGAATT+AGG | + | chr8.4:7309263-7309282 | MS.gene57662:intron | 30.0% | |
| ATGAAGCTCAGTAATGAAAA+AGG | + | chr8.4:7308214-7308233 | MS.gene57662:CDS | 30.0% | |
| ATTATACGAGTAAACTTTCC+CGG | - | chr8.4:7310674-7310693 | None:intergenic | 30.0% | |
| ATTCTATGTTAGAAAGGGAT+TGG | + | chr8.4:7309122-7309141 | MS.gene57662:intron | 30.0% | |
| ATTTATTTATCACTAGAGGG+GGG | - | chr8.4:7308771-7308790 | None:intergenic | 30.0% | |
| CATTTCTTGCATTATGTTAC+AGG | + | chr8.4:7310100-7310119 | MS.gene57662:intron | 30.0% | |
| CTAAAATAACTACTACGTCA+GGG | - | chr8.4:7309873-7309892 | None:intergenic | 30.0% | |
| CTATATTCATTAAAACCTCC+GGG | + | chr8.4:7309932-7309951 | MS.gene57662:intron | 30.0% | |
| CTTAGAGTTTCTATATGGAT+AGG | + | chr8.4:7308845-7308864 | MS.gene57662:intron | 30.0% | |
| CTTGACATTCTATGTTAGAA+AGG | + | chr8.4:7309116-7309135 | MS.gene57662:intron | 30.0% | |
| GAAATGAGACTACATTATAG+AGG | + | chr8.4:7310622-7310641 | MS.gene57662:CDS | 30.0% | |
| GATAAAACACTTGATTGTCT+TGG | + | chr8.4:7310204-7310223 | MS.gene57662:CDS | 30.0% | |
| TCCTCCTATAAAAATTGCTA+GGG | + | chr8.4:7309501-7309520 | MS.gene57662:CDS | 30.0% | |
| TCTATTGCTTCTAGATTCTA+AGG | + | chr8.4:7308819-7308838 | MS.gene57662:intron | 30.0% | |
| TGAAGATTTATGTTCAAGTG+TGG | - | chr8.4:7308958-7308977 | None:intergenic | 30.0% | |
| TTAATTGGAGGTAATTGCTT+TGG | - | chr8.4:7309222-7309241 | None:intergenic | 30.0% | |
| TTCAGCCTGTCAAATAAATA+AGG | - | chr8.4:7309687-7309706 | None:intergenic | 30.0% | |
| TTCCTCCTATAAAAATTGCT+AGG | + | chr8.4:7309500-7309519 | MS.gene57662:CDS | 30.0% | |
| ! | ATTTTCTCTTCGTCCAAAAT+AGG | - | chr8.4:7308511-7308530 | None:intergenic | 30.0% |
| ! | CCTTGTCAAAAACAGATTTT+GGG | + | chr8.4:7309427-7309446 | MS.gene57662:intron | 30.0% |
| !! | CTCATAATTTTGAGTCACAT+TGG | + | chr8.4:7310375-7310394 | MS.gene57662:intron | 30.0% |
| !! | CTTCATTTTTCTTAAGGACT+CGG | - | chr8.4:7308371-7308390 | None:intergenic | 30.0% |
| !!! | AATTCTGGTTTTTTGACCAA+AGG | - | chr8.4:7310600-7310619 | None:intergenic | 30.0% |
| !!! | CCAAAATCTGTTTTTGACAA+GGG | - | chr8.4:7309429-7309448 | None:intergenic | 30.0% |
| AAAACACTTGATTGTCTTGG+CGG | + | chr8.4:7310207-7310226 | MS.gene57662:CDS | 35.0% | |
| AACATATCTCAATTGAGAGG+TGG | + | chr8.4:7308547-7308566 | MS.gene57662:CDS | 35.0% | |
| AATTCAAGTGACGAACCAAA+AGG | + | chr8.4:7308166-7308185 | MS.gene57662:CDS | 35.0% | |
| ACAAAGATGTTGTGCCTAAA+TGG | + | chr8.4:7308719-7308738 | MS.gene57662:CDS | 35.0% | |
| ACACTTGAAAGATGAAGAGA+AGG | - | chr8.4:7309575-7309594 | None:intergenic | 35.0% | |
| ACATACACCTGATTAATAGG+AGG | - | chr8.4:7309189-7309208 | None:intergenic | 35.0% | |
| ACTACATTATAGAGGGAACA+AGG | + | chr8.4:7310630-7310649 | MS.gene57662:CDS | 35.0% | |
| ATTTCCTCTTTGTCAGTCAA+TGG | + | chr8.4:7309042-7309061 | MS.gene57662:CDS | 35.0% | |
| CAAAGATGTTGTGCCTAAAT+GGG | + | chr8.4:7308720-7308739 | MS.gene57662:CDS | 35.0% | |
| CAAGGGACCAAGAAAAAATT+AGG | - | chr8.4:7309412-7309431 | None:intergenic | 35.0% | |
| CAATGGTAGTAAAACTGCAA+AGG | + | chr8.4:7309059-7309078 | MS.gene57662:CDS | 35.0% | |
| CATTATGTTACAGGAGATGA+AGG | + | chr8.4:7310109-7310128 | MS.gene57662:intron | 35.0% | |
| CCTAAAATAACTACTACGTC+AGG | - | chr8.4:7309874-7309893 | None:intergenic | 35.0% | |
| CCTATAAAAATTGCTAGGGA+TGG | + | chr8.4:7309505-7309524 | MS.gene57662:CDS | 35.0% | |
| CGATTATCTTCTACATTACC+CGG | - | chr8.4:7309953-7309972 | None:intergenic | 35.0% | |
| GAGGAAATGTGATCAAATAG+TGG | - | chr8.4:7309030-7309049 | None:intergenic | 35.0% | |
| GATAAGAAGCTTAGAGTTGA+AGG | + | chr8.4:7308256-7308275 | MS.gene57662:CDS | 35.0% | |
| GATTTGATTCTCGATGAAGT+TGG | - | chr8.4:7308583-7308602 | None:intergenic | 35.0% | |
| GGATGGATCAATTATGGAAT+GGG | + | chr8.4:7309522-7309541 | MS.gene57662:CDS | 35.0% | |
| TACTAGACCTCCTATTAATC+AGG | + | chr8.4:7309179-7309198 | MS.gene57662:intron | 35.0% | |
| TAGAGTTGAAGGTTCAGATT+GGG | + | chr8.4:7308267-7308286 | MS.gene57662:CDS | 35.0% | |
| TTAGAGTTGAAGGTTCAGAT+TGG | + | chr8.4:7308266-7308285 | MS.gene57662:CDS | 35.0% | |
| TTATACGAGTAAACTTTCCC+GGG | - | chr8.4:7310673-7310692 | None:intergenic | 35.0% | |
| TTGAAACAAAAGCTCCACAA+CGG | - | chr8.4:7308629-7308648 | None:intergenic | 35.0% | |
| TTGTACACCAAAATGACCTA+AGG | + | chr8.4:7310025-7310044 | MS.gene57662:intron | 35.0% | |
| ! | ATTGCTTCTAGATTCTAAGG+TGG | + | chr8.4:7308822-7308841 | MS.gene57662:intron | 35.0% |
| ! | CCATCCCTAGCAATTTTTAT+AGG | - | chr8.4:7309508-7309527 | None:intergenic | 35.0% |
| ! | CCCTTGTCAAAAACAGATTT+TGG | + | chr8.4:7309426-7309445 | MS.gene57662:intron | 35.0% |
| ! | GATACAACCTTAGGTCATTT+TGG | - | chr8.4:7310035-7310054 | None:intergenic | 35.0% |
| ! | GCAGAAAACTGAATTCCTTT+TGG | - | chr8.4:7308184-7308203 | None:intergenic | 35.0% |
| ! | GGATCTTTCTTAGAGTTTTC+AGG | - | chr8.4:7308343-7308362 | None:intergenic | 35.0% |
| ! | TCCCTAGCAATTTTTATAGG+AGG | - | chr8.4:7309505-7309524 | None:intergenic | 35.0% |
| ! | TGGGTAAGTCTTGTCTTTAA+CGG | + | chr8.4:7310318-7310337 | MS.gene57662:intron | 35.0% |
| !! | ACATTTGTTTGGCTTGTTTC+CGG | + | chr8.4:7309745-7309764 | MS.gene57662:CDS | 35.0% |
| !! | CCTGACGTAGTAGTTATTTT+AGG | + | chr8.4:7309871-7309890 | MS.gene57662:intron | 35.0% |
| !! | GAGTTTTCAGGATCAGTAAA+TGG | - | chr8.4:7308331-7308350 | None:intergenic | 35.0% |
| !! | GTGGAGCTTTTGTTTCAATA+CGG | + | chr8.4:7308631-7308650 | MS.gene57662:CDS | 35.0% |
| !! | TTAGGTCATTTTGGTGTACA+AGG | - | chr8.4:7310026-7310045 | None:intergenic | 35.0% |
| !!! | CCCAAAATCTGTTTTTGACA+AGG | - | chr8.4:7309430-7309449 | None:intergenic | 35.0% |
| !!! | CTCTTTTTTTGTCATCCAGT+GGG | + | chr8.4:7308929-7308948 | MS.gene57662:intron | 35.0% |
| !!! | TCTCTTTTTTTGTCATCCAG+TGG | + | chr8.4:7308928-7308947 | MS.gene57662:intron | 35.0% |
| !!! | TCTTTTTTTGTCATCCAGTG+GGG | + | chr8.4:7308930-7308949 | MS.gene57662:intron | 35.0% |
| AACTTGGAAAGCTGCATTGT+GGG | + | chr8.4:7310147-7310166 | MS.gene57662:CDS | 40.0% | |
| AAGTTCGCGTCAATTTGGAA+TGG | - | chr8.4:7310298-7310317 | None:intergenic | 40.0% | |
| ACAAGGTTGAACATGAACGA+GGG | - | chr8.4:7310009-7310028 | None:intergenic | 40.0% | |
| ACTCATGTAGGTTGCAAGAA+AGG | - | chr8.4:7308999-7309018 | None:intergenic | 40.0% | |
| CACTTGAATTCACTTGTGGA+GGG | - | chr8.4:7308156-7308175 | None:intergenic | 40.0% | |
| CGGCATGTTTCACATTTGTT+TGG | + | chr8.4:7309734-7309753 | MS.gene57662:CDS | 40.0% | |
| CTCATGTAGGTTGCAAGAAA+GGG | - | chr8.4:7308998-7309017 | None:intergenic | 40.0% | |
| CTTTGTTCCATATACCCTGT+AGG | - | chr8.4:7308705-7308724 | None:intergenic | 40.0% | |
| GGGAAAACATACTCCCATTT+AGG | - | chr8.4:7308736-7308755 | None:intergenic | 40.0% | |
| GGGATGGATCAATTATGGAA+TGG | + | chr8.4:7309521-7309540 | MS.gene57662:CDS | 40.0% | |
| GGTGGCTTAGAGTTTCTATA+TGG | + | chr8.4:7308840-7308859 | MS.gene57662:intron | 40.0% | |
| GTAGTCTCATTTCGGAATTC+TGG | - | chr8.4:7310615-7310634 | None:intergenic | 40.0% | |
| TACAAGGTTGAACATGAACG+AGG | - | chr8.4:7310010-7310029 | None:intergenic | 40.0% | |
| TCACTTGAATTCACTTGTGG+AGG | - | chr8.4:7308157-7308176 | None:intergenic | 40.0% | |
| TCCAAATTGACGCGAACTTT+GGG | + | chr8.4:7310299-7310318 | MS.gene57662:CDS | 40.0% | |
| TCCACAGCTTTACAAAGATC+TGG | - | chr8.4:7309797-7309816 | None:intergenic | 40.0% | |
| TCCAGATCTTTGTAAAGCTG+TGG | + | chr8.4:7309793-7309812 | MS.gene57662:CDS | 40.0% | |
| TCGATATTTATTGTGTGCCC+CGG | - | chr8.4:7309767-7309786 | None:intergenic | 40.0% | |
| TCGTCACTTGAATTCACTTG+TGG | - | chr8.4:7308160-7308179 | None:intergenic | 40.0% | |
| TGATGTTTATGCTCGTCACT+TGG | + | chr8.4:7308414-7308433 | MS.gene57662:CDS | 40.0% | |
| TGCTAGGGATGGATCAATTA+TGG | + | chr8.4:7309516-7309535 | MS.gene57662:CDS | 40.0% | |
| TTAGGGATTCACTTCGCAAA+GGG | - | chr8.4:7310725-7310744 | None:intergenic | 40.0% | |
| TTATCTTCTACATTACCCGG+AGG | - | chr8.4:7309950-7309969 | None:intergenic | 40.0% | |
| TTCCAAATTGACGCGAACTT+TGG | + | chr8.4:7310298-7310317 | MS.gene57662:CDS | 40.0% | |
| TTTCTTAAGGACTCGGAAGT+AGG | - | chr8.4:7308364-7308383 | None:intergenic | 40.0% | |
| ! | AAAGGATTAAAAGCACGTGG+CGG | + | chr8.4:7310526-7310545 | MS.gene57662:CDS | 40.0% |
| ! | ACTACCATTGACTGACAAAG+AGG | - | chr8.4:7309049-7309068 | None:intergenic | 40.0% |
| ! | AGTCACATTGGCTGAGAAAA+TGG | + | chr8.4:7310387-7310406 | MS.gene57662:intron | 40.0% |
| ! | GTGAAAGGATTAAAAGCACG+TGG | + | chr8.4:7310523-7310542 | MS.gene57662:CDS | 40.0% |
| ! | TTGACAGGCTGAAGATTTTC+AGG | + | chr8.4:7309694-7309713 | MS.gene57662:intron | 40.0% |
| !! | ATTTGTTTGGCTTGTTTCCG+GGG | + | chr8.4:7309747-7309766 | MS.gene57662:CDS | 40.0% |
| !! | CATTTGTTTGGCTTGTTTCC+GGG | + | chr8.4:7309746-7309765 | MS.gene57662:CDS | 40.0% |
| AAATGGACCATCAAACGACG+AGG | - | chr8.4:7308314-7308333 | None:intergenic | 45.0% | |
| AACAAAAGCTCCACAACGGA+AGG | - | chr8.4:7308625-7308644 | None:intergenic | 45.0% | |
| ACATGCCGATGATGTACATC+TGG | - | chr8.4:7309722-7309741 | None:intergenic | 45.0% | |
| ACCCAAAGTTCGCGTCAATT+TGG | - | chr8.4:7310303-7310322 | None:intergenic | 45.0% | |
| AGGACCCAGATGTACATCAT+CGG | + | chr8.4:7309714-7309733 | MS.gene57662:CDS | 45.0% | |
| ATCAGTTCACCTCAGCAACA+TGG | - | chr8.4:7309348-7309367 | None:intergenic | 45.0% | |
| ATTTATCACTAGAGGGGGGA+TGG | - | chr8.4:7308767-7308786 | None:intergenic | 45.0% | |
| CAACTTGGAAAGCTGCATTG+TGG | + | chr8.4:7310146-7310165 | MS.gene57662:CDS | 45.0% | |
| CATGCCGATGATGTACATCT+GGG | - | chr8.4:7309721-7309740 | None:intergenic | 45.0% | |
| CTAATTGCTTGTTCACGTCC+TGG | + | chr8.4:7308664-7308683 | MS.gene57662:CDS | 45.0% | |
| GAAGGTGATCTGCATGAAGT+TGG | + | chr8.4:7310574-7310593 | MS.gene57662:CDS | 45.0% | |
| GCTTGTTCAAAGCACAACGA+AGG | + | chr8.4:7310450-7310469 | MS.gene57662:CDS | 45.0% | |
| GTCAACATCTGCTGGAAAGA+AGG | + | chr8.4:7310556-7310575 | MS.gene57662:CDS | 45.0% | |
| GTCGTGGCAAATTTATCACC+CGG | + | chr8.4:7310652-7310671 | MS.gene57662:CDS | 45.0% | |
| TCGTGGCAAATTTATCACCC+GGG | + | chr8.4:7310653-7310672 | MS.gene57662:CDS | 45.0% | |
| TGATGAAGATCCTTCCGTTG+TGG | + | chr8.4:7308612-7308631 | MS.gene57662:CDS | 45.0% | |
| TGGCAAACCTACAGGGTATA+TGG | + | chr8.4:7308695-7308714 | MS.gene57662:CDS | 45.0% | |
| TGGGCAAATGGTTGTGTGAA+AGG | + | chr8.4:7310508-7310527 | MS.gene57662:CDS | 45.0% | |
| TGTAGGTTGCAAGAAAGGGA+CGG | - | chr8.4:7308994-7309013 | None:intergenic | 45.0% | |
| TTATAGAGGGAACAAGGTCG+TGG | + | chr8.4:7310636-7310655 | MS.gene57662:CDS | 45.0% | |
| TTTCCAAGTTGTTGACCACC+CGG | - | chr8.4:7310137-7310156 | None:intergenic | 45.0% | |
| ! | AAGGATTAAAAGCACGTGGC+GGG | + | chr8.4:7310527-7310546 | MS.gene57662:CDS | 45.0% |
| ! | TTCGCGTCAATTTGGAATGG+AGG | - | chr8.4:7310295-7310314 | None:intergenic | 45.0% |
| !! | ATCTGCATGAAGTTGGCCTT+TGG | + | chr8.4:7310581-7310600 | MS.gene57662:CDS | 45.0% |
| !!! | CAGGAAGCTGTTGGTTTTGA+AGG | + | chr8.4:7310238-7310257 | MS.gene57662:CDS | 45.0% |
| !!! | GAAGCTGTTGGTTTTGAAGG+AGG | + | chr8.4:7310241-7310260 | MS.gene57662:CDS | 45.0% |
| AAACCAACAGCTTCCTGCTC+AGG | - | chr8.4:7310235-7310254 | None:intergenic | 50.0% | |
| AACCAACAGCTTCCTGCTCA+GGG | - | chr8.4:7310234-7310253 | None:intergenic | 50.0% | |
| AACTCAGGTGGCAAACCTAC+AGG | + | chr8.4:7308687-7308706 | MS.gene57662:CDS | 50.0% | |
| AAGGAAGCTGTCCTGGCAAA+AGG | + | chr8.4:7308128-7308147 | MS.gene57662:CDS | 50.0% | |
| ACAGCTTCCTCGTCGTTTGA+TGG | + | chr8.4:7308304-7308323 | MS.gene57662:CDS | 50.0% | |
| ACCAATCCACCATGTTGCTG+AGG | + | chr8.4:7309336-7309355 | MS.gene57662:intron | 50.0% | |
| ACTCAGGTGGCAAACCTACA+GGG | + | chr8.4:7308688-7308707 | MS.gene57662:CDS | 50.0% | |
| AGTTCACCTCAGCAACATGG+TGG | - | chr8.4:7309345-7309364 | None:intergenic | 50.0% | |
| ATGGAGGATGTGCTGTGAAC+AGG | - | chr8.4:7310279-7310298 | None:intergenic | 50.0% | |
| CCATTTGCCCATTTATCCCG+AGG | - | chr8.4:7310499-7310518 | None:intergenic | 50.0% | |
| CCTCGGGATAAATGGGCAAA+TGG | + | chr8.4:7310496-7310515 | MS.gene57662:CDS | 50.0% | |
| GTGGCTCTTGACACTCATGT+AGG | - | chr8.4:7309011-7309030 | None:intergenic | 50.0% | |
| GTTACAGGAGATGAAGGTCC+CGG | + | chr8.4:7310115-7310134 | MS.gene57662:intron | 50.0% | |
| TCTTGCATGTTGCTACGCAC+AGG | + | chr8.4:7309304-7309323 | MS.gene57662:intron | 50.0% | |
| TTACAGGAGATGAAGGTCCC+GGG | + | chr8.4:7310116-7310135 | MS.gene57662:intron | 50.0% | |
| TTCCAAGTTGTTGACCACCC+GGG | - | chr8.4:7310136-7310155 | None:intergenic | 50.0% | |
| TTGTTCACGTCCTGGAACTC+AGG | + | chr8.4:7308672-7308691 | MS.gene57662:CDS | 50.0% | |
| ! | AGGATTAAAAGCACGTGGCG+GGG | + | chr8.4:7310528-7310547 | MS.gene57662:CDS | 50.0% |
| !! | ACCTCAGCAACATGGTGGAT+TGG | - | chr8.4:7309340-7309359 | None:intergenic | 50.0% |
| !! | TCAGCAACATGGTGGATTGG+TGG | - | chr8.4:7309337-7309356 | None:intergenic | 50.0% |
| ACTTACTTCCTGCGCTGCCT+CGG | + | chr8.4:7310479-7310498 | MS.gene57662:CDS | 55.0% | |
| AGAGGGGGGATGGAAAGTGA+AGG | - | chr8.4:7308757-7308776 | None:intergenic | 55.0% | |
| AGGTTTGCCACCTGAGTTCC+AGG | - | chr8.4:7308685-7308704 | None:intergenic | 55.0% | |
| GAGGGGGGATGGAAAGTGAA+GGG | - | chr8.4:7308756-7308775 | None:intergenic | 55.0% | |
| GCAGCGCAGGAAGTAAGTAG+AGG | - | chr8.4:7310477-7310496 | None:intergenic | 55.0% | |
| GGGTGACAGTCAACATCTGC+TGG | + | chr8.4:7310548-7310567 | MS.gene57662:CDS | 55.0% | |
| TGCGCTGCCTCGGGATAAAT+GGG | + | chr8.4:7310489-7310508 | MS.gene57662:CDS | 55.0% | |
| TTCACGTCCTGGAACTCAGG+TGG | + | chr8.4:7308675-7308694 | MS.gene57662:CDS | 55.0% | |
| ! | TGTGGAGGGATCCTTTTGCC+AGG | - | chr8.4:7308142-7308161 | None:intergenic | 55.0% |
| CATTTATCCCGAGGCAGCGC+AGG | - | chr8.4:7310490-7310509 | None:intergenic | 60.0% | |
| CTGCGCTGCCTCGGGATAAA+TGG | + | chr8.4:7310488-7310507 | MS.gene57662:CDS | 60.0% | |
| CTTACTTCCTGCGCTGCCTC+GGG | + | chr8.4:7310480-7310499 | MS.gene57662:CDS | 60.0% | |
| GACCCTGAGCAGGAAGCTGT+TGG | + | chr8.4:7310229-7310248 | MS.gene57662:CDS | 60.0% | |
| GTCCCGGGTGGTCAACAACT+TGG | + | chr8.4:7310131-7310150 | MS.gene57662:CDS | 60.0% | |
| GTTCAAGTGTGGAGCCCCAC+TGG | - | chr8.4:7308947-7308966 | None:intergenic | 60.0% | |
| CAGGAGATGAAGGTCCCGGG+TGG | + | chr8.4:7310119-7310138 | MS.gene57662:intron | 65.0% | |
| ! | TGTCTTGGCGGACCCTGAGC+AGG | + | chr8.4:7310219-7310238 | MS.gene57662:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7308124 | 7310744 | 7308124 | ID=MS.gene57662 |
| chr8.4 | mRNA | 7308124 | 7310744 | 7308124 | ID=MS.gene57662.t1;Parent=MS.gene57662 |
| chr8.4 | exon | 7308124 | 7308743 | 7308124 | ID=MS.gene57662.t1.exon1;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7308124 | 7308743 | 7308124 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| chr8.4 | exon | 7308948 | 7309080 | 7308948 | ID=MS.gene57662.t1.exon2;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7308948 | 7309080 | 7308948 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| chr8.4 | exon | 7309442 | 7309543 | 7309442 | ID=MS.gene57662.t1.exon3;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7309442 | 7309543 | 7309442 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| chr8.4 | exon | 7309701 | 7309836 | 7309701 | ID=MS.gene57662.t1.exon4;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7309701 | 7309836 | 7309701 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| chr8.4 | exon | 7310122 | 7310320 | 7310122 | ID=MS.gene57662.t1.exon5;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7310122 | 7310320 | 7310122 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| chr8.4 | exon | 7310426 | 7310744 | 7310426 | ID=MS.gene57662.t1.exon6;Parent=MS.gene57662.t1 |
| chr8.4 | CDS | 7310426 | 7310744 | 7310426 | ID=cds.MS.gene57662.t1;Parent=MS.gene57662.t1 |
| Gene Sequence |
| Protein sequence |
