AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055277


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055277.t1 MTR_7g062140 97.647 255 6 0 1 255 75 329 0.0 513
MS.gene055277.t1 MTR_4g021815 79.608 255 52 0 1 255 1 255 1.40e-155 433
MS.gene055277.t1 MTR_8g010700 30.263 228 121 8 42 248 108 318 4.45e-22 93.6
MS.gene055277.t1 MTR_4g068970 36.458 96 57 2 107 198 183 278 4.36e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055277.t1 AT2G37660 81.855 248 45 0 8 255 78 325 3.75e-155 434
MS.gene055277.t1 AT5G02240 77.823 248 55 0 8 255 6 253 7.01e-143 400
MS.gene055277.t1 AT4G31530 33.051 236 119 8 35 248 100 318 9.58e-23 95.1
MS.gene055277.t1 AT4G31530 32.877 219 109 7 35 232 100 301 1.02e-20 90.1
MS.gene055277.t1 AT2G34460 31.061 264 142 12 2 251 40 277 8.49e-19 84.0
MS.gene055277.t1 AT3G18890 36.458 96 57 2 107 198 183 278 1.96e-12 67.0

Find 61 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCAACAAAGGACTTTA+AGG 0.161530 7.4:+41736539 MS.gene055277:CDS
AAGAGTACTGTGCTTGTTAC+TGG 0.291951 7.4:+41733120 MS.gene055277:CDS
TAACCATCCTTTGAACAGTT+TGG 0.300060 7.4:+41735710 MS.gene055277:CDS
TCAATTCAAGGCATTTGATT+TGG 0.316577 7.4:+41736494 MS.gene055277:CDS
GATTGTGTTAGTAGGGTCTA+TGG 0.317597 7.4:+41735674 MS.gene055277:CDS
GAGCCTAATAGTACCTGTTC+AGG 0.328614 7.4:-41735163 None:intergenic
AACCATCCTTTGAACAGTTT+GGG 0.329707 7.4:+41735711 MS.gene055277:CDS
GAAGAAAGCAAGCAGAAAAT+TGG 0.340025 7.4:+41734968 MS.gene055277:CDS
GCATCTATACCTTGAATTGC+AGG 0.353717 7.4:-41735043 None:intergenic
GTATTCCGTATACGATTATA+AGG 0.357893 7.4:+41735889 MS.gene055277:CDS
AAGAAAGGCTGAACAATATC+TGG 0.358271 7.4:+41735857 MS.gene055277:CDS
TTTGGGTGATGGGAATATAT+TGG 0.358986 7.4:+41735728 MS.gene055277:CDS
GTAAAGCAGATTGTGTTAGT+AGG 0.387562 7.4:+41735666 MS.gene055277:CDS
CTTTGAACAGTTTGGGTGAT+GGG 0.397272 7.4:+41735718 MS.gene055277:CDS
GGTATCCGAGAACTCGTCAT+AGG 0.398344 7.4:+41736063 MS.gene055277:CDS
CCTTCCCTATGACGAGTTCT+CGG 0.402259 7.4:-41736068 None:intergenic
GTGTACCTTATAATCGTATA+CGG 0.404154 7.4:-41735894 None:intergenic
AAAGCCTTAAAGTCCTTTGT+TGG 0.407444 7.4:-41736543 None:intergenic
AGTCTTGTTCCTGCAATTCA+AGG 0.415414 7.4:+41735034 MS.gene055277:CDS
GTTGGTGAACCTGTTCCCTC+AGG 0.424555 7.4:-41736525 None:intergenic
CCTCTTGCGACATATTCGTT+TGG 0.424788 7.4:-41734932 None:intergenic
CCTTGAGTTGGATCGAATCC+AGG 0.431455 7.4:-41735103 None:intergenic
ATTGTAGGTTTGGAAAAGAA+AGG 0.432611 7.4:+41735842 MS.gene055277:intron
TGTTGCAGAAGTCTGTATTC+AGG 0.433542 7.4:+41736137 MS.gene055277:CDS
AATTGCAGGAACAAGACTTT+CGG 0.441069 7.4:-41735029 None:intergenic
GCATCAAAACCTGAGGGAAC+AGG 0.441936 7.4:+41736516 MS.gene055277:CDS
ACTGGTGCTGCTGGTCGTAC+AGG 0.446496 7.4:+41733138 MS.gene055277:CDS
ACATGAACAGCTAAGGCTGC+TGG 0.491366 7.4:+41735642 MS.gene055277:intron
CCTTTGAACAGTTTGGGTGA+TGG 0.492670 7.4:+41735717 MS.gene055277:CDS
GTGCTTGTTACTGGTGCTGC+TGG 0.493811 7.4:+41733129 MS.gene055277:CDS
AGATGGTGCATACCCTGAAC+AGG 0.502612 7.4:+41735150 MS.gene055277:CDS
CTAAATTGAGTCAGGGCTGG+TGG 0.503589 7.4:+41736021 MS.gene055277:intron
AACTGTTCAAAGGATGGTTA+AGG 0.503693 7.4:-41735707 None:intergenic
TCTAGCTATGGTTCTGATGT+CGG 0.517693 7.4:-41736109 None:intergenic
TCAGTGGTACTCCACTAGTA+AGG 0.519176 7.4:-41735075 None:intergenic
ATTGTGTTAGTAGGGTCTAT+GGG 0.532454 7.4:+41735675 MS.gene055277:CDS
ATACAGACTTCTGCAACATC+AGG 0.535402 7.4:-41736132 None:intergenic
GTTTACTAGGTTGACTGGAT+CGG 0.535946 7.4:+41735512 MS.gene055277:intron
GAACAATATCTGGCTGACTC+TGG 0.541428 7.4:+41735867 MS.gene055277:CDS
TAAAGCAGATTGTGTTAGTA+GGG 0.541706 7.4:+41735667 MS.gene055277:CDS
CCAAACGAATATGTCGCAAG+AGG 0.555610 7.4:+41734932 MS.gene055277:CDS
AGCCTAATAGTACCTGTTCA+GGG 0.567506 7.4:-41735162 None:intergenic
ACCATCTTCAAAATAGAACT+CGG 0.567981 7.4:-41735134 None:intergenic
CACCCAAACTGTTCAAAGGA+TGG 0.577560 7.4:-41735713 None:intergenic
TGCAACATCAGGTCTAGCTA+TGG 0.582809 7.4:-41736121 None:intergenic
CCTGGATTCGATCCAACTCA+AGG 0.593139 7.4:+41735103 MS.gene055277:CDS
GTATCCGAGAACTCGTCATA+GGG 0.593785 7.4:+41736064 MS.gene055277:CDS
CCATCACCCAAACTGTTCAA+AGG 0.597247 7.4:-41735717 None:intergenic
GCTCTCATAATCCTTACTAG+TGG 0.601737 7.4:+41735064 MS.gene055277:CDS
TGATTTGGCATCAAAACCTG+AGG 0.602928 7.4:+41736509 MS.gene055277:CDS
GGGAACAGGTTCACCAACAA+AGG 0.603238 7.4:+41736530 MS.gene055277:CDS
GGAGTACCACTGATGAAACC+TGG 0.607060 7.4:+41735085 MS.gene055277:CDS
CCATCTTCAAAATAGAACTC+GGG 0.615847 7.4:-41735133 None:intergenic
TGGTGGTTTGCAAGACAAAG+AGG 0.615970 7.4:+41736038 MS.gene055277:CDS
CAAACGAATATGTCGCAAGA+GGG 0.618843 7.4:+41734933 MS.gene055277:CDS
CCGAGAACTCGTCATAGGGA+AGG 0.618903 7.4:+41736068 MS.gene055277:CDS
GATTTGGCATCAAAACCTGA+GGG 0.627143 7.4:+41736510 MS.gene055277:CDS
GGTGGTTTGCAAGACAAAGA+GGG 0.640822 7.4:+41736039 MS.gene055277:CDS
GTGTTAGTAGGGTCTATGGG+TGG 0.647322 7.4:+41735678 MS.gene055277:CDS
TCGAATCCAGGTTTCATCAG+TGG 0.648497 7.4:-41735091 None:intergenic
GGTTTGCAAGACAAAGAGGG+AGG 0.721811 7.4:+41736042 MS.gene055277:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAATATGAATAAAAA+AGG - chr7.4:41735487-41735506 None:intergenic 10.0%
!! TTTATAAAAAATTAAAAGAG+AGG + chr7.4:41734909-41734928 MS.gene055277:CDS 10.0%
!!! TACATTACATTTTAAAATTT+GGG - chr7.4:41734099-41734118 None:intergenic 10.0%
!! AACATATTCAATATAATGTT+GGG - chr7.4:41733516-41733535 None:intergenic 15.0%
!! ATGATACTATCTTAAAATTT+AGG - chr7.4:41733890-41733909 None:intergenic 15.0%
!! TAACATATTCAATATAATGT+TGG - chr7.4:41733517-41733536 None:intergenic 15.0%
!! TATTGAATATGTTAAAATTG+AGG + chr7.4:41733523-41733542 MS.gene055277:intron 15.0%
!! TTAGAAAATGAGTTTATAAT+GGG + chr7.4:41734023-41734042 MS.gene055277:intron 15.0%
!!! AGTAATATGAGTTTTAATTA+AGG + chr7.4:41733315-41733334 MS.gene055277:intron 15.0%
!!! ATTATGATATTTCTATTTCA+AGG + chr7.4:41734739-41734758 MS.gene055277:intron 15.0%
!!! CAAATTTTAAAATGTAATGT+AGG + chr7.4:41734098-41734117 MS.gene055277:intron 15.0%
!!! CTACATTACATTTTAAAATT+TGG - chr7.4:41734100-41734119 None:intergenic 15.0%
!!! TTAAAATTGAGGTTTAATTT+AGG + chr7.4:41733534-41733553 MS.gene055277:intron 15.0%
!!! TTTTAGTAATTTTGTTTACT+AGG + chr7.4:41735499-41735518 MS.gene055277:intron 15.0%
!! AAATATAGGAATATAAATGC+AGG + chr7.4:41733273-41733292 MS.gene055277:intron 20.0%
!! AATATAGGAATATAAATGCA+GGG + chr7.4:41733274-41733293 MS.gene055277:intron 20.0%
!! CTTCAACTTTATAATATAGA+TGG - chr7.4:41734787-41734806 None:intergenic 20.0%
!! GTTAGAAAATGAGTTTATAA+TGG + chr7.4:41734022-41734041 MS.gene055277:intron 20.0%
!! TAAAATTAAGATTTCTGACT+GGG + chr7.4:41733577-41733596 MS.gene055277:intron 20.0%
!! TAAGCAACAATATAAGAAAA+TGG - chr7.4:41736412-41736431 None:intergenic 20.0%
!! TACTATCTTAAAATTTAGGT+TGG - chr7.4:41733886-41733905 None:intergenic 20.0%
!! TGTTAAACAAATTGAATCAA+GGG - chr7.4:41736453-41736472 None:intergenic 20.0%
!! TTAAAATTAAGATTTCTGAC+TGG + chr7.4:41733576-41733595 MS.gene055277:intron 20.0%
!! TTAGAATTATTTATGAAGCA+CGG + chr7.4:41733349-41733368 MS.gene055277:intron 20.0%
!!! AAAATTTCTGATTTTTGGTA+TGG + chr7.4:41733628-41733647 MS.gene055277:intron 20.0%
!!! AAATTTCTGATTTTTGGTAT+GGG + chr7.4:41733629-41733648 MS.gene055277:intron 20.0%
!!! AACTGAAAATTTCTGATTTT+TGG + chr7.4:41733623-41733642 MS.gene055277:intron 20.0%
!!! TAACCTATTTCTATATCAAA+AGG + chr7.4:41735237-41735256 MS.gene055277:intron 20.0%
!!! TTACCTTTTGATATAGAAAT+AGG - chr7.4:41735243-41735262 None:intergenic 20.0%
!!! TTTAATTTAGGTTTAGTGAA+TGG + chr7.4:41733546-41733565 MS.gene055277:intron 20.0%
! AAAATTAAGATTTCTGACCT+GGG + chr7.4:41733673-41733692 MS.gene055277:intron 25.0%
! AAAATTAAGATTTCTGACTG+GGG + chr7.4:41733578-41733597 MS.gene055277:intron 25.0%
! AAAGATTGGATCATATAATC+GGG + chr7.4:41734609-41734628 MS.gene055277:intron 25.0%
! ACTGAAATGTGTGAAAATAT+AGG + chr7.4:41733259-41733278 MS.gene055277:intron 25.0%
! ATGAATCATAATCTACCTTT+CGG - chr7.4:41734659-41734678 None:intergenic 25.0%
! ATTCGATGTAATTATATGTG+TGG + chr7.4:41733432-41733451 MS.gene055277:intron 25.0%
! CAAAGATTGGATCATATAAT+CGG + chr7.4:41734608-41734627 MS.gene055277:intron 25.0%
! CTGACTCAATTTAGAAAAAT+GGG - chr7.4:41736015-41736034 None:intergenic 25.0%
! CTGTTAAACAAATTGAATCA+AGG - chr7.4:41736454-41736473 None:intergenic 25.0%
! GAAATCAGAAAGTGATAAAA+AGG - chr7.4:41734849-41734868 None:intergenic 25.0%
! GATCTATGATTATGTAGAAA+AGG - chr7.4:41735574-41735593 None:intergenic 25.0%
! GTCTGATATTAGATAAAATC+AGG + chr7.4:41734000-41734019 MS.gene055277:intron 25.0%
! TAAAATTAAGATTTCTGACC+TGG + chr7.4:41733672-41733691 MS.gene055277:intron 25.0%
! TGATGAAAAATTGTTCAAAC+CGG - chr7.4:41734565-41734584 None:intergenic 25.0%
! TTATGAGAAAAATGCATGTT+TGG + chr7.4:41735796-41735815 MS.gene055277:intron 25.0%
! TTCGATGTAATTATATGTGT+GGG + chr7.4:41733433-41733452 MS.gene055277:intron 25.0%
! TTTGGTATAGATAAAAAGTC+AGG - chr7.4:41736378-41736397 None:intergenic 25.0%
!! AATGTTTTCATAAGTTATCC+TGG + chr7.4:41735274-41735293 MS.gene055277:intron 25.0%
!! CATTTTTCTAAATTGAGTCA+GGG + chr7.4:41736014-41736033 MS.gene055277:intron 25.0%
!! CTTGATTCAATTTGTTTAAC+AGG + chr7.4:41736452-41736471 MS.gene055277:intron 25.0%
!! TGTTTCGTTCTACAAAATTT+TGG + chr7.4:41735765-41735784 MS.gene055277:intron 25.0%
!!! ACATTTTAAAATTTGGGTTG+AGG - chr7.4:41734093-41734112 None:intergenic 25.0%
!!! GTATGATTCCTACTTTTATT+TGG + chr7.4:41735944-41735963 MS.gene055277:intron 25.0%
!!! TACGAAGTTTTGTCAAATAA+TGG - chr7.4:41736264-41736283 None:intergenic 25.0%
AAATTAAGATTTCTGACCTG+GGG + chr7.4:41733674-41733693 MS.gene055277:intron 30.0%
AAATTAAGATTTCTGACTGG+GGG + chr7.4:41733579-41733598 MS.gene055277:intron 30.0%
ACCATCTTCAAAATAGAACT+CGG - chr7.4:41735137-41735156 None:intergenic 30.0%
ATCTGTGTAGTTTCAAAGAT+TGG + chr7.4:41734595-41734614 MS.gene055277:intron 30.0%
ATTGTAGGTTTGGAAAAGAA+AGG + chr7.4:41735842-41735861 MS.gene055277:intron 30.0%
CACTTTCTGATTTCTTAATC+TGG + chr7.4:41734855-41734874 MS.gene055277:intron 30.0%
CAGAAAAATCAAATAGATGC+TGG + chr7.4:41735536-41735555 MS.gene055277:CDS 30.0%
CATGGAAATGAGTTTATAGT+GGG + chr7.4:41733807-41733826 MS.gene055277:intron 30.0%
CCTGACTCAATTTAGAAAAA+TGG - chr7.4:41736016-41736035 None:intergenic 30.0%
CTATAGCAATGTTATATTGC+TGG - chr7.4:41736340-41736359 None:intergenic 30.0%
CTTATTGAATCCTACAAAAC+CGG - chr7.4:41733861-41733880 None:intergenic 30.0%
GCAACAATATAAGAAAATGG+TGG - chr7.4:41736409-41736428 None:intergenic 30.0%
GCTTCCTAAAACAAAAACAT+AGG + chr7.4:41734145-41734164 MS.gene055277:intron 30.0%
GTAATTATATGTGTGGGTTT+CGG + chr7.4:41733439-41733458 MS.gene055277:intron 30.0%
GTATTCCGTATACGATTATA+AGG + chr7.4:41735889-41735908 MS.gene055277:CDS 30.0%
GTGTACCTTATAATCGTATA+CGG - chr7.4:41735897-41735916 None:intergenic 30.0%
GTTAGATGCCAAATAAAAGT+AGG - chr7.4:41735955-41735974 None:intergenic 30.0%
TAAAGCAGATTGTGTTAGTA+GGG + chr7.4:41735667-41735686 MS.gene055277:CDS 30.0%
TAAGATTCTCACATGAGATT+AGG + chr7.4:41733784-41733803 MS.gene055277:intron 30.0%
TAGTAGCATACATTTCCAAT+TGG - chr7.4:41734453-41734472 None:intergenic 30.0%
TATACGATTATAAGGTACAC+CGG + chr7.4:41735897-41735916 MS.gene055277:intron 30.0%
TCAAATAAGTCAAACCAAAC+AGG + chr7.4:41735415-41735434 MS.gene055277:intron 30.0%
TCATTAACAACAAATGCAGT+CGG - chr7.4:41734350-41734369 None:intergenic 30.0%
TGAATCATAATCTACCTTTC+GGG - chr7.4:41734658-41734677 None:intergenic 30.0%
TTGTTCAGTGTAATAGAAAC+CGG - chr7.4:41735919-41735938 None:intergenic 30.0%
TTTATCTACATGAACAGCTA+AGG + chr7.4:41735635-41735654 MS.gene055277:intron 30.0%
TTTGGTATACGTTTAGTGAA+TGG + chr7.4:41733641-41733660 MS.gene055277:intron 30.0%
! AATTTAGGTTTAGTGAATGG+TGG + chr7.4:41733549-41733568 MS.gene055277:intron 30.0%
! CAAGGTATTTGATATCTTTG+TGG + chr7.4:41734241-41734260 MS.gene055277:intron 30.0%
! CGCATAATACATTTTCCATA+TGG + chr7.4:41735438-41735457 MS.gene055277:intron 30.0%
! TCAATTCAAGGCATTTGATT+TGG + chr7.4:41736494-41736513 MS.gene055277:CDS 30.0%
! TGTTGCTTAACTATGTGATT+TGG + chr7.4:41736423-41736442 MS.gene055277:intron 30.0%
! TTAACAGGCACTAAATTTTG+AGG + chr7.4:41736467-41736486 MS.gene055277:intron 30.0%
!! AAAATGGTGGAATTGTGTTT+TGG - chr7.4:41736396-41736415 None:intergenic 30.0%
!! ACTTTTATTTGGCATCTAAC+TGG + chr7.4:41735955-41735974 MS.gene055277:intron 30.0%
!! ATTTTGTTTACTAGGTTGAC+TGG + chr7.4:41735507-41735526 MS.gene055277:intron 30.0%
!! CCATTTTTCTAAATTGAGTC+AGG + chr7.4:41736013-41736032 MS.gene055277:intron 30.0%
!! GAGATTTTGAAAACAGCTTA+TGG - chr7.4:41735340-41735359 None:intergenic 30.0%
!! TTTCGTATTGATTGTAGGTT+TGG + chr7.4:41735832-41735851 MS.gene055277:intron 30.0%
!!! GGTTTTAAAAAAACAGTCTC+AGG + chr7.4:41734198-41734217 MS.gene055277:intron 30.0%
!!! GTTGTTTTCGTATTGATTGT+AGG + chr7.4:41735827-41735846 MS.gene055277:intron 30.0%
!!! GTTTTTGGTTGCAATAAAGA+AGG + chr7.4:41734497-41734516 MS.gene055277:intron 30.0%
!!! TACGCCTATGTTTTTGTTTT+AGG - chr7.4:41734152-41734171 None:intergenic 30.0%
!!! TTTTTAAGTACCATTCAGAC+CGG + chr7.4:41734543-41734562 MS.gene055277:intron 30.0%
AAAGCCTTAAAGTCCTTTGT+TGG - chr7.4:41736546-41736565 None:intergenic 35.0%
AAATGTATTATGCGCCTGTT+TGG - chr7.4:41735432-41735451 None:intergenic 35.0%
AACCATCCTTTGAACAGTTT+GGG + chr7.4:41735711-41735730 MS.gene055277:CDS 35.0%
AACTGTTCAAAGGATGGTTA+AGG - chr7.4:41735710-41735729 None:intergenic 35.0%
AAGAAAGGCTGAACAATATC+TGG + chr7.4:41735857-41735876 MS.gene055277:CDS 35.0%
AATGTTATATTGCTGGAGCA+TGG - chr7.4:41736333-41736352 None:intergenic 35.0%
AATTAAGATTTCTGACCTGG+GGG + chr7.4:41733675-41733694 MS.gene055277:intron 35.0%
AATTAAGATTTCTGACTGGG+GGG + chr7.4:41733580-41733599 MS.gene055277:intron 35.0%
AATTGCAGGAACAAGACTTT+CGG - chr7.4:41735032-41735051 None:intergenic 35.0%
ACTTATTTGAGCTCATCTAG+TGG - chr7.4:41735405-41735424 None:intergenic 35.0%
ATATCAAATACCTTGACGTC+TGG - chr7.4:41734236-41734255 None:intergenic 35.0%
ATTGTGTTAGTAGGGTCTAT+GGG + chr7.4:41735675-41735694 MS.gene055277:CDS 35.0%
CCATCTTCAAAATAGAACTC+GGG - chr7.4:41735136-41735155 None:intergenic 35.0%
GAAGAAAGCAAGCAGAAAAT+TGG + chr7.4:41734968-41734987 MS.gene055277:CDS 35.0%
GAAGACAGATTCATAGATTG+TGG - chr7.4:41734689-41734708 None:intergenic 35.0%
GAATGATCTCTTACTATGCA+AGG + chr7.4:41734045-41734064 MS.gene055277:intron 35.0%
GCATGGAAATGAGTTTATAG+TGG + chr7.4:41733806-41733825 MS.gene055277:intron 35.0%
GTAAAGCAGATTGTGTTAGT+AGG + chr7.4:41735666-41735685 MS.gene055277:CDS 35.0%
GTGTTAGACACCACAAAAAT+CGG - chr7.4:41733468-41733487 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG + chr7.4:41735710-41735729 MS.gene055277:CDS 35.0%
TCAAAAACGAGTAGTGATCT+GGG - chr7.4:41736574-41736593 None:intergenic 35.0%
TTCACCAACAAAGGACTTTA+AGG + chr7.4:41736539-41736558 MS.gene055277:CDS 35.0%
TTCTTACTAACTTACCCGAA+AGG + chr7.4:41734641-41734660 MS.gene055277:intron 35.0%
TTTGAAAACAGCTTATGGCA+TGG - chr7.4:41735335-41735354 None:intergenic 35.0%
! ACTATGCAAGGTGATTTTGT+TGG + chr7.4:41734057-41734076 MS.gene055277:intron 35.0%
! AGAGAGAGAGAGAGAATTTT+TGG + chr7.4:41733189-41733208 MS.gene055277:intron 35.0%
! ATTTTTGTGGTGTCTAACAC+AGG + chr7.4:41733468-41733487 MS.gene055277:intron 35.0%
! CTATGCAAGGTGATTTTGTT+GGG + chr7.4:41734058-41734077 MS.gene055277:intron 35.0%
! TTTAATTGCTGTTACTTCGC+AGG + chr7.4:41734878-41734897 MS.gene055277:intron 35.0%
!! CAGGGTTTTGTAGATTTCAT+TGG + chr7.4:41733292-41733311 MS.gene055277:intron 35.0%
!! GCTGCAGATGATGTTTTTAT+TGG + chr7.4:41734992-41735011 MS.gene055277:CDS 35.0%
!! TTTGGGTGATGGGAATATAT+TGG + chr7.4:41735728-41735747 MS.gene055277:CDS 35.0%
AGAAGAACGATGTGAATGCA+GGG + chr7.4:41734177-41734196 MS.gene055277:intron 40.0%
AGCCTAATAGTACCTGTTCA+GGG - chr7.4:41735165-41735184 None:intergenic 40.0%
AGGTACTATTAGGCTCTGTT+TGG + chr7.4:41735170-41735189 MS.gene055277:intron 40.0%
ATACAGACTTCTGCAACATC+AGG - chr7.4:41736135-41736154 None:intergenic 40.0%
ATTAAGATTTCTGACCTGGG+GGG + chr7.4:41733676-41733695 MS.gene055277:intron 40.0%
ATTAAGATTTCTGACTGGGG+GGG + chr7.4:41733581-41733600 MS.gene055277:intron 40.0%
ATTGTTCAAACCGGTCTGAA+TGG - chr7.4:41734556-41734575 None:intergenic 40.0%
CAAACGAATATGTCGCAAGA+GGG + chr7.4:41734933-41734952 MS.gene055277:CDS 40.0%
CAACCAAAAACCTCTGTAAG+TGG - chr7.4:41734488-41734507 None:intergenic 40.0%
CTAAGAATCTCCACTTACAG+AGG + chr7.4:41734475-41734494 MS.gene055277:intron 40.0%
CTCTGTAAGTGGAGATTCTT+AGG - chr7.4:41734477-41734496 None:intergenic 40.0%
CTGTATAGTGTCTCAGCTTT+CGG + chr7.4:41734424-41734443 MS.gene055277:intron 40.0%
CTTTGAACAGTTTGGGTGAT+GGG + chr7.4:41735718-41735737 MS.gene055277:CDS 40.0%
GATTGTGTTAGTAGGGTCTA+TGG + chr7.4:41735674-41735693 MS.gene055277:CDS 40.0%
GATTTGGCATCAAAACCTGA+GGG + chr7.4:41736510-41736529 MS.gene055277:CDS 40.0%
GCAATTTAAACCAGACGTCA+AGG + chr7.4:41734223-41734242 MS.gene055277:intron 40.0%
GCATCTATACCTTGAATTGC+AGG - chr7.4:41735046-41735065 None:intergenic 40.0%
GCTCTCATAATCCTTACTAG+TGG + chr7.4:41735064-41735083 MS.gene055277:CDS 40.0%
GGCTCAAAAAATTCTACGTC+TGG + chr7.4:41734760-41734779 MS.gene055277:intron 40.0%
GTCAACTTAAGCATGCCATA+TGG - chr7.4:41735456-41735475 None:intergenic 40.0%
TAACCTATCCTAGATCCATC+AGG + chr7.4:41733909-41733928 MS.gene055277:intron 40.0%
TACCCTGAACAGGTACTATT+AGG + chr7.4:41735160-41735179 MS.gene055277:intron 40.0%
TATAATGTTGGGACACTCCT+CGG - chr7.4:41733505-41733524 None:intergenic 40.0%
TATGGGTTCTGTTAGTGACT+TGG + chr7.4:41733745-41733764 MS.gene055277:intron 40.0%
TGTTGCAGAAGTCTGTATTC+AGG + chr7.4:41736137-41736156 MS.gene055277:CDS 40.0%
TTCTCACATGAGATTAGGCA+TGG + chr7.4:41733789-41733808 MS.gene055277:intron 40.0%
TTTCTAAATTGAGTCAGGGC+TGG + chr7.4:41736018-41736037 MS.gene055277:intron 40.0%
! AATGAGTTTATAGTGGGAGC+CGG + chr7.4:41733813-41733832 MS.gene055277:intron 40.0%
! CATGCTCTAGATGTTGTCTT+GGG + chr7.4:41733957-41733976 MS.gene055277:intron 40.0%
! GGTAATTAGCGGTTTGTTCA+AGG + chr7.4:41736228-41736247 MS.gene055277:intron 40.0%
! GTTTACTAGGTTGACTGGAT+CGG + chr7.4:41735512-41735531 MS.gene055277:intron 40.0%
! TCATGCTCTAGATGTTGTCT+TGG + chr7.4:41733956-41733975 MS.gene055277:intron 40.0%
! TCTCCACTTACAGAGGTTTT+TGG + chr7.4:41734482-41734501 MS.gene055277:intron 40.0%
! TGATTTGGCATCAAAACCTG+AGG + chr7.4:41736509-41736528 MS.gene055277:CDS 40.0%
!! AAGAGTACTGTGCTTGTTAC+TGG + chr7.4:41733120-41733139 MS.gene055277:CDS 40.0%
!! ACAGGCACTAAATTTTGAGG+AGG + chr7.4:41736470-41736489 MS.gene055277:intron 40.0%
!! AGTCTTGTTCCTGCAATTCA+AGG + chr7.4:41735034-41735053 MS.gene055277:CDS 40.0%
!! CCCGAGTTCTATTTTGAAGA+TGG + chr7.4:41735133-41735152 MS.gene055277:CDS 40.0%
!! TCTAGCTATGGTTCTGATGT+CGG - chr7.4:41736112-41736131 None:intergenic 40.0%
!! TTTTGAGGAGGCTCAATTCA+AGG + chr7.4:41736482-41736501 MS.gene055277:CDS 40.0%
AACAGTCGCAAGTGCTTATG+CGG + chr7.4:41735365-41735384 MS.gene055277:intron 45.0%
AAGTTATCCTGGAGAGCTCA+TGG + chr7.4:41735285-41735304 MS.gene055277:intron 45.0%
AGATGTTGTCTTGGGCTTGA+AGG + chr7.4:41733965-41733984 MS.gene055277:intron 45.0%
AGTAAGCTCTCTCCAGTCAA+TGG + chr7.4:41736197-41736216 MS.gene055277:intron 45.0%
CACCCAAACTGTTCAAAGGA+TGG - chr7.4:41735716-41735735 None:intergenic 45.0%
CAGAAGAACGATGTGAATGC+AGG + chr7.4:41734176-41734195 MS.gene055277:intron 45.0%
CCAAACGAATATGTCGCAAG+AGG + chr7.4:41734932-41734951 MS.gene055277:CDS 45.0%
CCATCACCCAAACTGTTCAA+AGG - chr7.4:41735720-41735739 None:intergenic 45.0%
CCTCTTGCGACATATTCGTT+TGG - chr7.4:41734935-41734954 None:intergenic 45.0%
CCTTTGAACAGTTTGGGTGA+TGG + chr7.4:41735717-41735736 MS.gene055277:CDS 45.0%
CTTATTTCCATGAGCTCTCC+AGG - chr7.4:41735295-41735314 None:intergenic 45.0%
GACTAATGTGACCTCAATCG+CGG - chr7.4:41734285-41734304 None:intergenic 45.0%
GAGCCTAATAGTACCTGTTC+AGG - chr7.4:41735166-41735185 None:intergenic 45.0%
GTATCCGAGAACTCGTCATA+GGG + chr7.4:41736064-41736083 MS.gene055277:CDS 45.0%
TCAGTGGTACTCCACTAGTA+AGG - chr7.4:41735078-41735097 None:intergenic 45.0%
TCGAATCCAGGTTTCATCAG+TGG - chr7.4:41735094-41735113 None:intergenic 45.0%
TGCAACATCAGGTCTAGCTA+TGG - chr7.4:41736124-41736143 None:intergenic 45.0%
TGGTAGATCGCGGTAATTAG+CGG + chr7.4:41736217-41736236 MS.gene055277:intron 45.0%
TTAAGATTTCTGACCTGGGG+GGG + chr7.4:41733677-41733696 MS.gene055277:intron 45.0%
TTAGATACATTAACCCCCCC+AGG - chr7.4:41733693-41733712 None:intergenic 45.0%
TTGAATCCTACAAAACCGGC+TGG - chr7.4:41733857-41733876 None:intergenic 45.0%
! ATGAGTTTATAGTGGGAGCC+GGG + chr7.4:41733814-41733833 MS.gene055277:intron 45.0%
! GAACAATATCTGGCTGACTC+TGG + chr7.4:41735867-41735886 MS.gene055277:CDS 45.0%
! GGTGGTTTGCAAGACAAAGA+GGG + chr7.4:41736039-41736058 MS.gene055277:CDS 45.0%
! TCGGGTCTTTTTCCTTGAGT+TGG - chr7.4:41735118-41735137 None:intergenic 45.0%
! TGACCTGATGGATCTAGGAT+AGG - chr7.4:41733915-41733934 None:intergenic 45.0%
! TGGTGGTTTGCAAGACAAAG+AGG + chr7.4:41736038-41736057 MS.gene055277:CDS 45.0%
!!! GTTTCGGACACCGATTTTTG+TGG + chr7.4:41733455-41733474 MS.gene055277:intron 45.0%
ACATGAACAGCTAAGGCTGC+TGG + chr7.4:41735642-41735661 MS.gene055277:intron 50.0%
AGATGGTGCATACCCTGAAC+AGG + chr7.4:41735150-41735169 MS.gene055277:CDS 50.0%
ATCAGTGTCTGTGTCGTGTC+TGG - chr7.4:41733390-41733409 None:intergenic 50.0%
CACCTGCTATCGAGTCATTC+AGG + chr7.4:41733933-41733952 MS.gene055277:intron 50.0%
CCTGGATTCGATCCAACTCA+AGG + chr7.4:41735103-41735122 MS.gene055277:CDS 50.0%
CCTTCCCTATGACGAGTTCT+CGG - chr7.4:41736071-41736090 None:intergenic 50.0%
CTAAATTGAGTCAGGGCTGG+TGG + chr7.4:41736021-41736040 MS.gene055277:intron 50.0%
CTCAGCTTTCGGTCTCCAAT+TGG + chr7.4:41734435-41734454 MS.gene055277:intron 50.0%
CTCCAGTCAATGGTAGATCG+CGG + chr7.4:41736207-41736226 MS.gene055277:intron 50.0%
GACCTGAATGACTCGATAGC+AGG - chr7.4:41733938-41733957 None:intergenic 50.0%
GCATCAAAACCTGAGGGAAC+AGG + chr7.4:41736516-41736535 MS.gene055277:CDS 50.0%
GGGAACAGGTTCACCAACAA+AGG + chr7.4:41736530-41736549 MS.gene055277:CDS 50.0%
GGTATCCGAGAACTCGTCAT+AGG + chr7.4:41736063-41736082 MS.gene055277:CDS 50.0%
GGTTTGCAAGACAAAGAGGG+AGG + chr7.4:41736042-41736061 MS.gene055277:CDS 50.0%
GTGTTAGTAGGGTCTATGGG+TGG + chr7.4:41735678-41735697 MS.gene055277:CDS 50.0%
TACCGCGATCTACCATTGAC+TGG - chr7.4:41736212-41736231 None:intergenic 50.0%
! AAAACCGGCTGGTAGTGTGA+GGG - chr7.4:41733846-41733865 None:intergenic 50.0%
! GGAGTACCACTGATGAAACC+TGG + chr7.4:41735085-41735104 MS.gene055277:CDS 50.0%
!! ACACTACCAGCCGGTTTTGT+AGG + chr7.4:41733848-41733867 MS.gene055277:intron 50.0%
!! CCTTGAGTTGGATCGAATCC+AGG - chr7.4:41735106-41735125 None:intergenic 50.0%
ACCTCAATCGCGGTTAGTGG+TGG - chr7.4:41734275-41734294 None:intergenic 55.0%
ATTTCTGACTGGGGGGGTTG+TGG + chr7.4:41733587-41733606 MS.gene055277:intron 55.0%
CCGAGAACTCGTCATAGGGA+AGG + chr7.4:41736068-41736087 MS.gene055277:CDS 55.0%
CCTCAATCGCGGTTAGTGGT+GGG - chr7.4:41734274-41734293 None:intergenic 55.0%
CTCGATAGCAGGTGACCTGA+TGG - chr7.4:41733927-41733946 None:intergenic 55.0%
GAATCCCTCACACTACCAGC+CGG + chr7.4:41733839-41733858 MS.gene055277:intron 55.0%
GTAGTGTGAGGGATTCCTCC+CGG - chr7.4:41733835-41733854 None:intergenic 55.0%
GTGACCTCAATCGCGGTTAG+TGG - chr7.4:41734278-41734297 None:intergenic 55.0%
GTTGGGACACTCCTCGGATT+AGG - chr7.4:41733499-41733518 None:intergenic 55.0%
TGCTGCTGGTCGTACAGGTT+TGG + chr7.4:41733143-41733162 MS.gene055277:intron 55.0%
TTTCTGACTGGGGGGGTTGT+GGG + chr7.4:41733588-41733607 MS.gene055277:intron 55.0%
! AGTTTATAGTGGGAGCCGGG+AGG + chr7.4:41733817-41733836 MS.gene055277:intron 55.0%
! CAAAACCGGCTGGTAGTGTG+AGG - chr7.4:41733847-41733866 None:intergenic 55.0%
! GCAGGTGACCTGATGGATCT+AGG - chr7.4:41733920-41733939 None:intergenic 55.0%
! GTTGGTGAACCTGTTCCCTC+AGG - chr7.4:41736528-41736547 None:intergenic 55.0%
!! GTGCTTGTTACTGGTGCTGC+TGG + chr7.4:41733129-41733148 MS.gene055277:CDS 55.0%
CACAGGACACGCCTAATCCG+AGG + chr7.4:41733485-41733504 MS.gene055277:intron 60.0%
CCCACCACTAACCGCGATTG+AGG + chr7.4:41734271-41734290 MS.gene055277:intron 60.0%
!! ACTGGTGCTGCTGGTCGTAC+AGG + chr7.4:41733138-41733157 MS.gene055277:CDS 60.0%
!! CGCGGTTAGTGGTGGGTTTG+TGG - chr7.4:41734267-41734286 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41733105 41736593 41733105 ID=MS.gene055277
chr7.4 mRNA 41733105 41736593 41733105 ID=MS.gene055277.t1;Parent=MS.gene055277
chr7.4 exon 41733105 41733159 41733105 ID=MS.gene055277.t1.exon1;Parent=MS.gene055277.t1
chr7.4 CDS 41733105 41733159 41733105 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41734900 41735171 41734900 ID=MS.gene055277.t1.exon2;Parent=MS.gene055277.t1
chr7.4 CDS 41734900 41735171 41734900 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41735521 41735557 41735521 ID=MS.gene055277.t1.exon3;Parent=MS.gene055277.t1
chr7.4 CDS 41735521 41735557 41735521 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41735652 41735749 41735652 ID=MS.gene055277.t1.exon4;Parent=MS.gene055277.t1
chr7.4 CDS 41735652 41735749 41735652 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41735849 41735910 41735849 ID=MS.gene055277.t1.exon5;Parent=MS.gene055277.t1
chr7.4 CDS 41735849 41735910 41735849 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41736035 41736158 41736035 ID=MS.gene055277.t1.exon6;Parent=MS.gene055277.t1
chr7.4 CDS 41736035 41736158 41736035 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
chr7.4 exon 41736474 41736593 41736474 ID=MS.gene055277.t1.exon7;Parent=MS.gene055277.t1
chr7.4 CDS 41736474 41736593 41736474 ID=cds.MS.gene055277.t1;Parent=MS.gene055277.t1
Gene Sequence

>MS.gene055277

ATGGCTGAGAATTCAAAGAGTACTGTGCTTGTTACTGGTGCTGCTGGTCGTACAGGTTTGGATTTTTTGTTGTTTGCTTTAGAGAGAGAGAGAGAGAGAATTTTTGGACTAGAAAATGACATTTCATGTTGTGTTTTTGTTTCTTGATTTTGTTACTGAAATGTGTGAAAATATAGGAATATAAATGCAGGGTTTTGTAGATTTCATTGGAGTAATATGAGTTTTAATTAAGGTTTAGTGAATGTTAGAATTATTTATGAAGCACGGATAGAGACATGAACACCAGACACGACACAGACACTGATAATGATTTGAAAAAATGACATAATTCGATGTAATTATATGTGTGGGTTTCGGACACCGATTTTTGTGGTGTCTAACACAGGACACGCCTAATCCGAGGAGTGTCCCAACATTATATTGAATATGTTAAAATTGAGGTTTAATTTAGGTTTAGTGAATGGTGGTATGTTAAAATTAAGATTTCTGACTGGGGGGGTTGTGGGTTAATGTGCATAAACTGAAAATTTCTGATTTTTGGTATACGTTTAGTGAATGGTAGATTGTTAAAATTAAGATTTCTGACCTGGGGGGGTTAATGTATCTAACTTCACATAAACTGAAAATTTCTGATTTTTGGTATGGGTTCTGTTAGTGACTTGGTGATGCAAATATAATTTAAGATTCTCACATGAGATTAGGCATGGAAATGAGTTTATAGTGGGAGCCGGGAGGAATCCCTCACACTACCAGCCGGTTTTGTAGGATTCAATAAGCTCCAACCTAAATTTTAAGATAGTATCATAACCTATCCTAGATCCATCAGGTCACCTGCTATCGAGTCATTCAGGTCATGCTCTAGATGTTGTCTTGGGCTTGAAGGAGTGTGTTAAGAGTCTGATATTAGATAAAATCAGGTTAGAAAATGAGTTTATAATGGGAATGATCTCTTACTATGCAAGGTGATTTTGTTGGGTAGAGTTAGCCTCAACCCAAATTTTAAAATGTAATGTAGGAATTTGTTTATGCTTTATAGTGTTGCTTCCTAAAACAAAAACATAGGCGTATAAACAGAAGAACGATGTGAATGCAGGGTTTTAAAAAAACAGTCTCAGGATGCAATTTAAACCAGACGTCAAGGTATTTGATATCTTTGTGGCCACAAACCCACCACTAACCGCGATTGAGGTCACATTAGTCTCACTTGACTGCGATTCTTTGTGAAATATTGAGAATTTTGATCCGACTGCATTTGTTGTTAATGACACAATGTCAAAAACGTTTGTGTGTTGCATTAGTTAGCATTAAATTTACAAAAGCTGTATAGTGTCTCAGCTTTCGGTCTCCAATTGGAAATGTATGCTACTATCCTAAGAATCTCCACTTACAGAGGTTTTTGGTTGCAATAAAGAAGGCGATTATAGTTATTTGAATTTAGTTTTTAAGTACCATTCAGACCGGTTTGAACAATTTTTCATCACATTGTTAAGATCTGTGTAGTTTCAAAGATTGGATCATATAATCGGGACTCGACTTTTCTTACTAACTTACCCGAAAGGTAGATTATGATTCATACTCTAACCACAATCTATGAATCTGTCTTCAAAAGTACAAATAGAAAAGACAAGTATAGCATTATGATATTTCTATTTCAAGGCTCAAAAAATTCTACGTCTGGTCCATCTATATTATAAAGTTGAAGTAAATTACGCTGACGACTACATGTATTAGTTGATACTATCCTTTTTATCACTTTCTGATTTCTTAATCTGGTTTAATTGCTGTTACTTCGCAGGACAAATAGTTTATAAAAAATTAAAAGAGAGGCCAAACGAATATGTCGCAAGAGGGCTAGTTAGAACAGAAGAAAGCAAGCAGAAAATTGGTGCTGCAGATGATGTTTTTATTGGTGATATAAGAGATACCGAAAGTCTTGTTCCTGCAATTCAAGGTATAGATGCTCTCATAATCCTTACTAGTGGAGTACCACTGATGAAACCTGGATTCGATCCAACTCAAGGAAAAAGACCCGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTACTATTAGGCTCTGTTTGGATAAACAACTTAAATTAAGTATTTATAGTACACATGTTTGTTTATAACCTATTTCTATATCAAAAGGTAAAATAAAGTCAAAATGTTTTCATAAGTTATCCTGGAGAGCTCATGGAAATAAGCTGAAAACAACATATGACCATGCCATAAGCTGTTTTCAAAATCTCTCTCAAACAGTCGCAAGTGCTTATGCGGCATGTTAAAACATGCCACTAGATGAGCTCAAATAAGTCAAACCAAACAGGCGCATAATACATTTTCCATATGGCATGCTTAAGTTGACAATATTATCCTTTTTTATTCATATTTTAGTAATTTTGTTTACTAGGTTGACTGGATCGGACAGAAAAATCAAATAGATGCTGGTGAGAATCTATGCCTTTTCTACATAATCATAGATCAGAATATAAACTTAAAAATGCTTGTTGTATTGAAATTAATTTTTATCTACATGAACAGCTAAGGCTGCTGGAGTAAAGCAGATTGTGTTAGTAGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGTTTGGGTGATGGGAATATATTGGTATGTAAATTGTAATGTTTCGTTCTACAAAATTTTGGCACAACGTTTATGAGAAAAATGCATGTTTGGTAACGAATGTTGTTTTCGTATTGATTGTAGGTTTGGAAAAGAAAGGCTGAACAATATCTGGCTGACTCTGGTATTCCGTATACGATTATAAGGTACACCGGTTTCTATTACACTGAACAATATCTGTATGATTCCTACTTTTATTTGGCATCTAACTGGAAACTAATTGAATTGTATATATAACGAAAATTTTCCCATTTTTCTAAATTGAGTCAGGGCTGGTGGTTTGCAAGACAAAGAGGGAGGTATCCGAGAACTCGTCATAGGGAAGGATGATGAGCTTCTAAAGACCGACATCAGAACCATAGCTAGACCTGATGTTGCAGAAGTCTGTATTCAGGTATCTTATTTGATTATTATCAGCTGTATGTGCAAGCAAGTAAGCTCTCTCCAGTCAATGGTAGATCGCGGTAATTAGCGGTTTGTTCAAGGTCTGCTATAGCCATTATTTGACAAAACTTCGTACTAAATAGTATGTTGCAGAACAATAGTGTGATTTGTTCAGATTCTGCCATGCTCCAGCAATATAACATTGCTATAGATGCTATTTGACAAACCTGACTTTTTATCTATACCAAAACACAATTCCACCATTTTCTTATATTGTTGCTTAACTATGTGATTTGGATGTCCCTTGATTCAATTTGTTTAACAGGCACTAAATTTTGAGGAGGCTCAATTCAAGGCATTTGATTTGGCATCAAAACCTGAGGGAACAGGTTCACCAACAAAGGACTTTAAGGCTTTATTTTCCCAGATCACTACTCGTTTTTGA

Protein sequence

>MS.gene055277.t1

MAENSKSTVLVTGAAGRTGQIVYKKLKERPNEYVARGLVRTEESKQKIGAADDVFIGDIRDTESLVPAIQGIDALIILTSGVPLMKPGFDPTQGKRPEFYFEDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTDLNHPLNSLGDGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELVIGKDDELLKTDIRTIARPDVAEVCIQALNFEEAQFKAFDLASKPEGTGSPTKDFKALFSQITTRF