AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57675

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57675.t1 MTR_3g101030 80.706 425 65 3 39 446 5 429 0.0 677
MS.gene57675.t1 MTR_3g101050 72.768 448 68 7 1 445 1 397 0.0 605
MS.gene57675.t1 MTR_3g101010 80.418 383 71 2 66 446 9 389 0.0 597
MS.gene57675.t1 MTR_8g027395 66.750 400 122 4 49 446 7 397 0.0 523
MS.gene57675.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene57675.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 9.62e-180 507
MS.gene57675.t1 MTR_8g461160 65.816 392 130 2 57 444 1 392 8.17e-178 503
MS.gene57675.t1 MTR_8g027420 66.234 385 111 5 64 446 8 375 2.96e-174 493
MS.gene57675.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 4.41e-173 491
MS.gene57675.t1 MTR_3g048000 63.402 388 117 5 60 444 25 390 9.88e-169 479
MS.gene57675.t1 MTR_4g088525 66.213 367 116 3 81 445 8 368 1.25e-167 476
MS.gene57675.t1 MTR_7g451890 62.078 385 142 2 66 446 18 402 7.07e-167 475
MS.gene57675.t1 MTR_4g088535 65.285 386 108 6 58 441 5 366 8.39e-166 472
MS.gene57675.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 2.36e-164 469
MS.gene57675.t1 MTR_7g047780 62.338 385 141 2 66 446 18 402 5.51e-164 468
MS.gene57675.t1 MTR_2g046030 63.636 385 127 5 66 444 9 386 1.34e-163 466
MS.gene57675.t1 MTR_2g045980 63.636 385 127 5 66 444 9 386 5.28e-163 465
MS.gene57675.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 8.33e-162 462
MS.gene57675.t1 MTR_3g101130 60.363 386 149 3 62 446 7 389 1.00e-159 456
MS.gene57675.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 1.68e-150 433
MS.gene57675.t1 MTR_3g102920 58.839 379 116 4 70 444 66 408 5.89e-140 407
MS.gene57675.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 4.10e-139 399
MS.gene57675.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 1.43e-126 372
MS.gene57675.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 3.64e-124 363
MS.gene57675.t1 MTR_3g018747 68.846 260 63 3 188 444 9 253 6.85e-121 353
MS.gene57675.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 1.05e-115 343
MS.gene57675.t1 MTR_7g050830 55.340 309 107 2 68 356 22 319 1.61e-111 332
MS.gene57675.t1 MTR_3g015760 58.423 279 102 4 173 444 8 279 7.34e-99 297
MS.gene57675.t1 MTR_3g111160 68.095 210 62 2 240 446 13 220 8.12e-90 272
MS.gene57675.t1 MTR_3g100520 60.360 222 71 3 229 446 1 209 1.50e-85 261
MS.gene57675.t1 MTR_3g101110 59.833 239 64 4 188 420 68 280 2.12e-85 263
MS.gene57675.t1 MTR_3g114310 42.000 400 205 12 64 446 21 410 9.91e-85 266
MS.gene57675.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 6.96e-84 256
MS.gene57675.t1 MTR_2g046410 64.039 203 65 3 248 444 147 347 6.82e-79 249
MS.gene57675.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 2.08e-76 235
MS.gene57675.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 6.61e-62 198
MS.gene57675.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 1.27e-59 192
MS.gene57675.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 2.05e-56 184
MS.gene57675.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.00e-44 162
MS.gene57675.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 1.60e-24 97.4
MS.gene57675.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 5.41e-20 86.3
MS.gene57675.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 2.52e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57675.t1 AT1G47710 51.605 405 187 5 44 444 18 417 4.69e-142 413
MS.gene57675.t1 AT1G47710 52.296 392 179 4 57 444 3 390 1.21e-141 410
MS.gene57675.t1 AT3G45220 47.815 389 185 6 66 443 9 390 2.68e-119 354
MS.gene57675.t1 AT2G25240 47.396 384 186 7 66 443 9 382 2.83e-114 341
MS.gene57675.t1 AT2G26390 46.770 387 188 6 66 443 9 386 9.94e-113 337
MS.gene57675.t1 AT1G62170 42.779 367 183 4 85 445 88 433 8.06e-96 295
MS.gene57675.t1 AT2G14540 44.792 384 183 6 66 443 37 397 1.29e-94 291
MS.gene57675.t1 AT1G64030 42.969 384 192 7 66 443 9 371 2.36e-92 285
MS.gene57675.t1 AT2G35580 41.823 373 188 8 81 443 18 371 6.25e-89 275
MS.gene57675.t1 AT1G62170 39.250 400 183 5 85 445 88 466 6.63e-89 278
MS.gene57675.t1 AT1G64010 46.759 216 93 4 229 443 1 195 1.53e-59 193
MS.gene57675.t1 AT1G64010 46.766 201 85 4 244 443 2 181 1.27e-53 177
MS.gene57675.t1 AT1G62160 40.110 182 86 4 266 445 60 220 1.04e-34 129
MS.gene57675.t1 AT1G63280 53.043 115 50 2 188 300 8 120 1.40e-32 120
MS.gene57675.t1 AT1G51330 53.763 93 43 0 187 279 30 122 1.53e-23 97.8
MS.gene57675.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.15e-12 64.3

Find 102 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69040158 MS.gene57675:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69040259 MS.gene57675:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69039990 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69040739 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69039754 MS.gene57675:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69040862 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69039828 MS.gene57675:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69039519 MS.gene57675:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69040616 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69039829 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69039919 MS.gene57675:CDS
ACTGAAACAATCATCTTTGT+TGG 0.329190 7.2:-69039543 MS.gene57675:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:-69039898 MS.gene57675:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69040256 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69040529 MS.gene57675:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69039854 MS.gene57675:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69039945 MS.gene57675:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69039828 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69040754 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69039659 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69040097 None:intergenic
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69040496 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69040495 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69040732 MS.gene57675:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69040482 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69040212 MS.gene57675:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69040081 MS.gene57675:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69040084 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69039538 MS.gene57675:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69039573 None:intergenic
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69040211 MS.gene57675:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69039871 MS.gene57675:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69040849 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69039684 MS.gene57675:CDS
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69039574 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69040674 MS.gene57675:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69040491 MS.gene57675:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:+69039893 None:intergenic
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69039944 MS.gene57675:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69039918 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69040528 MS.gene57675:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69040548 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69040683 MS.gene57675:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69040650 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69040258 MS.gene57675:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69040621 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69039994 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69040872 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69039518 MS.gene57675:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69040658 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69040649 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:+69040796 None:intergenic
TGCAGTCACTAGCAGTGGCA+TGG 0.521843 7.2:-69039631 MS.gene57675:CDS
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69039603 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69040765 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69040701 None:intergenic
GCAGTCACTAGCAGTGGCAT+GGG 0.532869 7.2:-69039630 MS.gene57675:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69039999 MS.gene57675:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69040675 MS.gene57675:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69040151 MS.gene57675:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69040624 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69040586 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69040592 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69039795 MS.gene57675:CDS
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:+69040946 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69040559 MS.gene57675:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69040563 MS.gene57675:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:+69040792 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69039864 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69040838 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69040536 MS.gene57675:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69039864 MS.gene57675:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69040435 MS.gene57675:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69040575 MS.gene57675:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:+69040793 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69040651 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69039762 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69039507 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69040560 MS.gene57675:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69040579 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69040766 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:+69040952 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69040607 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69039802 MS.gene57675:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69040547 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69040780 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69040207 MS.gene57675:CDS
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:+69040807 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69040930 MS.gene57675:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69040839 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69040525 MS.gene57675:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69040239 MS.gene57675:CDS
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:+69040810 None:intergenic
AGTGACTGCATCAGATGCGG+TGG 0.649976 7.2:+69039644 None:intergenic
TCTGATGCAGTCACTAGCAG+TGG 0.651539 7.2:-69039636 MS.gene57675:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69040760 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69040190 MS.gene57675:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69040610 None:intergenic
GCTAGTGACTGCATCAGATG+CGG 0.677841 7.2:+69039641 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69039790 MS.gene57675:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69040536 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69040197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69040192-69040211 MS.gene57675:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69040131-69040150 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69040666-69040685 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69040201-69040220 MS.gene57675:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69039760-69039779 MS.gene57675:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69040398-69040417 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69040664-69040683 MS.gene57675:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69040667-69040686 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69040921-69040940 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69040922-69040941 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69040808-69040827 MS.gene57675:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69040100-69040119 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69040099-69040118 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69040397-69040416 MS.gene57675:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69040363-69040382 MS.gene57675:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69040780-69040799 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69040475-69040494 MS.gene57675:CDS 25.0%
ACTGAAACAATCATCTTTGT+TGG - chr7.2:69040949-69040968 MS.gene57675:CDS 30.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69039623-69039642 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69040280-69040299 MS.gene57675:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69039756-69039775 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69040234-69040253 MS.gene57675:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69040411-69040430 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69040233-69040252 MS.gene57675:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69040281-69040300 MS.gene57675:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69040505-69040524 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69040411-69040430 MS.gene57675:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69039601-69039620 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69040098-69040117 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69039741-69039760 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69039633-69039652 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69040954-69040973 MS.gene57675:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69040239-69040258 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69040738-69040757 MS.gene57675:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69039999-69040018 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69040548-69040567 MS.gene57675:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69040001-69040020 MS.gene57675:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69040690-69040709 MS.gene57675:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69040000-69040019 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69040547-69040566 MS.gene57675:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69039608-69039627 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69040013-69040032 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69039845-69039864 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69040740-69040759 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69040057-69040076 MS.gene57675:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69040638-69040657 MS.gene57675:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69039656-69039675 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69039794-69039813 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69039964-69039983 MS.gene57675:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69040621-69040640 MS.gene57675:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69040631-69040650 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69040628-69040647 MS.gene57675:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69040501-69040520 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG + chr7.2:69039549-69039568 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69040334-69040353 MS.gene57675:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69039917-69039936 MS.gene57675:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69040602-69040621 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69039963-69039982 MS.gene57675:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69039924-69039943 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69039846-69039865 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69040724-69040743 MS.gene57675:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69039844-69039863 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69040721-69040740 MS.gene57675:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69039730-69039749 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69039729-69039748 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69039959-69039978 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69039956-69039975 MS.gene57675:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69039657-69039676 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69039646-69039665 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69040892-69040911 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69039735-69039754 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69040733-69040752 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG + chr7.2:69039702-69039721 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69040697-69040716 MS.gene57675:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69040253-69040272 MS.gene57675:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69040341-69040360 MS.gene57675:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69040493-69040512 MS.gene57675:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69040552-69040571 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69039874-69039893 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69039916-69039935 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69040285-69040304 MS.gene57675:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69039879-69039898 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69040974-69040993 MS.gene57675:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG + chr7.2:69039703-69039722 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69039562-69039581 MS.gene57675:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG + chr7.2:69039543-69039562 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69040573-69040592 MS.gene57675:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69040577-69040596 None:intergenic 50.0%
GCTAGTGACTGCATCAGATG+CGG + chr7.2:69040854-69040873 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:69040594-69040613 MS.gene57675:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69040302-69040321 MS.gene57675:intron 50.0%
TCTGATGCAGTCACTAGCAG+TGG - chr7.2:69040856-69040875 MS.gene57675:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69039715-69039734 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG + chr7.2:69039688-69039707 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69039967-69039986 MS.gene57675:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69039909-69039928 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69039871-69039890 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69040556-69040575 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69039885-69039904 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69039888-69039907 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69040298-69040317 None:intergenic 55.0%
AGTGACTGCATCAGATGCGG+TGG + chr7.2:69040851-69040870 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69040973-69040992 MS.gene57675:CDS 55.0%
GCAGTCACTAGCAGTGGCAT+GGG - chr7.2:69040862-69040881 MS.gene57675:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG + chr7.2:69039699-69039718 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69039809-69039828 MS.gene57675:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69040702-69040721 MS.gene57675:CDS 55.0%
TGCAGTCACTAGCAGTGGCA+TGG - chr7.2:69040861-69040880 MS.gene57675:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69039837-69039856 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69039948-69039967 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:69039685-69039704 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69039929-69039948 MS.gene57675:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69039903-69039922 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69040836-69040855 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69039818-69039837 MS.gene57675:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69039933-69039952 MS.gene57675:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69039932-69039951 MS.gene57675:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69039947-69039966 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69039817-69039836 MS.gene57675:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69039515 69040999 69039515 ID=MS.gene57675
chr7.2 mRNA 69039515 69040999 69039515 ID=MS.gene57675.t1;Parent=MS.gene57675
chr7.2 exon 69040436 69040999 69040436 ID=MS.gene57675.t1.exon1;Parent=MS.gene57675.t1
chr7.2 CDS 69040436 69040999 69040436 ID=cds.MS.gene57675.t1;Parent=MS.gene57675.t1
chr7.2 exon 69039515 69040291 69039515 ID=MS.gene57675.t1.exon2;Parent=MS.gene57675.t1
chr7.2 CDS 69039515 69040291 69039515 ID=cds.MS.gene57675.t1;Parent=MS.gene57675.t1
Gene Sequence

>MS.gene57675

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTAAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCACTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGAAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene57675.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRKFTMYFFLPNAKDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVTSSGMGFPTRLDFVADHPFLFMIREELTETIIFVGQVLNPLAG